Why and how we should join the shift from significance testing to estimation
Berner, Daniel; Amrhein, Valentin (2022), Why and how we should join the shift from significance testing to estimation, Dryad, Dataset, https://doi.org/10.5061/dryad.zkh1893c8
A paradigm shift away from null hypothesis significance testing seems in progress. Based on simulations, we illustrate some of the underlying motivations. First, p-values vary strongly from study to study, hence dichotomous inference using significance thresholds is usually unjustified. Second, ‘statistically significant’ results have overestimated effect sizes, a bias declining with increasing statistical power. Third, ‘statistically non-significant’ results have underestimated effect sizes, and this bias gets stronger with higher statistical power. Fourth, the tested statistical hypotheses usually lack biological justification and are often uninformative. Despite these problems, a screen of 48 papers from the 2020 volume of the Journal of Evolutionary Biology exemplifies that significance testing is still used almost universally in evolutionary biology. All screened studies tested default null hypotheses of zero effect with the default significance threshold of p = 0.05, none presented a pre-specified alternative hypothesis, pre-study power calculation and the probability of ‘false negatives’ (beta error rate). The results sections of the papers presented 49 significance tests on average (median 23, range 0–390). Of 41 studies that contained verbal descriptions of a ‘statistically non-significant’ result, 26 (63%) falsely claimed the absence of an effect. We conclude that studies in ecology and evolutionary biology are mostly exploratory and descriptive. We should thus shift from claiming to ‘test’ specific hypotheses statistically to describing and discussing many hypotheses (possible true effect sizes) that are most compatible with our data, given our statistical model. We already have the means for doing so, because we routinely present compatibility (‘confidence’) intervals covering these hypotheses.
The code used for simulations and graphing is provided as plain txt file and is explained in the paper and in Appendix S1. The screening data set is provided as xlsx file and was generated by following the methods described in detail in the paper and in Appendix S1.