Data for: Colonization dynamics explain the decoupling of species richness and morphological disparity in syngnatharian fishes across oceans
Data files
Nov 07, 2024 version files 2.52 GB
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Appendix_1.csv
35.30 KB
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Appendix_2.csv
9.21 KB
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Biogeographic_analyses.zip
1.04 MB
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Lineage_diversification_rate_analyses.zip
2.68 MB
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Morphological_analyses.zip
2.51 GB
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Phylogenomics.zip
1.46 MB
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README.md
80.81 KB
Abstract
A clear longitudinal gradient in species richness across oceans is observed in extant marine fishes, with the Indo-Pacific exhibiting the greatest diversity. Three non-mutually exclusive evolutionary hypotheses have been proposed to explain this diversity gradient: time-for-speciation, center-of-accumulation, and in situ diversification rates. Using the morphologically disparate syngnatharians (seahorses, dragonets, goatfishes, and relatives) as a study system, we tested these hypotheses and additionally assessed whether patterns of morphological diversity are congruent with species richness patterns. We used well-sampled phylogenies and a suite of phylogenetic comparative methods (including a novel phylogenetically-corrected Kruskal-Wallis test) that account for various sources of uncertainty to estimate rates of lineage diversification and morphological disparity within all three major oceanic realms (Indo-Pacific, Atlantic, and eastern Pacific), as well as within the Indo-Pacific region. We find similar lineage diversification rates across regions, indicating that increased syngnatharian diversity in the Indo-Pacific is due to earlier colonizations from the Tethys Sea followed by in situ speciation and more frequent colonization during the Miocene coinciding with the formation of coral reefs. These results support both time-for-speciation and center-of-accumulation hypotheses. Unlike species richness unevenness, shape disparity and evolutionary rates are similar across oceans due to the early origin of major body plans and their subsequent spread via colonization rather than in situ evolution. Our results illustrate how species richness patterns became decoupled from morphological disparity patterns during the formation of a major biodiversity hotspot.
README: Data for: Colonization dynamics explain the decoupling of species richness and morphological disparity in syngnatharian fishes across oceans
https://doi.org/10.5061/dryad.zkh1893gd
Corresponding authors: Aintzane Santaquiteria (aintzanesantaquiteria@gmail.com) Ricardo Betancur-R. (rbetancur@ucsd.edu)
General information
When files are numbered on the README or in the file itself, please follow the specified order when using the scripts, as the output files from one step will be used as input files for the next.
Description of the data and file structure
File: Appendix_1.csv
Description: List of specimens examined and GenBank sequences.
Variables
- Source- study or source that provided the data
- Type of molecular marker- molecular marker used for analysis (i.e., COI or ultraconserved elements)
- Family- taxonomic family to which each fish species belongs
- Species name- scientific name of the species included in the study
- Study Code- museum or previous study code assigned for each sample
- NCBI Accession Number- associated with each species’ data entry in the NCBI (National Center for Biotechnology Information) database, useful for retrieving molecular data associated with the species
File: Appendix_2.csv
Description: Hypervolume statistics results across regions for syngnatharian (all species or by suborder) for head-only and full-body datasets. This CSV file contains four different tables. The missing values (indicated by "NA") are due to instances where calculations of overlap are not possible due to a lack of intersecting species between the areas being compared.
Variables
- Jaccard- Jaccard similarity (volume of intersection of 1 and 2 divided by volume of union of 1 and 2)
- Sorensen- Sorensen similarity (twice the volume of intersection of 1 and 2 divided by volume of 1 plus volume of 2)
- Frac_unique_1- Unique fraction 1 (volume of unique component of 1 divided by volume of 1)
- Frac_unique_2- Unique fraction 2 (volume of unique component of 2 divided by volume of 2)
File: Phylogenomics.zip
Description: COI alignment, backbone, and expanded phylogenetic trees. Phylograms (RAxML and ASTRAL-III) and chronograms (backbones calibrated in RelTime and MCMCTree, and expanded trees in TreePL).
->Curated_Final_alignment_COI_Backbone_RENAMED.phy- COI alignments for 324 species in phylip format
->"Backbone_trees" folder:
-"Phylograms" folder: trees inferred in RAxML and ASTRAL-III for the entire matrix and each subset with 164 species (Newick format):
backbone_Raxml_besttree_matrix75.tre
backbone_Raxml_besttree_matrix90.tre
backbone_Raxml_besttree_S01.tre
backbone_Raxml_besttree_S02.tre
backbone_Raxml_besttree_S03.tre
backbone_Raxml_besttree_S04.tre
backbone_Raxml_besttree_S05.tre
backbone_Raxml_besttree_S06.tre
backbone_Raxml_besttree_S07.tre
backbone_Raxml_besttree_S08.tre
backbone_Raxml_besttree_S09.tre
backbone_Raxml_besttree_S10.tre
backbone_Raxml_besttree_S11.tre
backbone_Raxml_besttree_S12.tre
backbone_346_ASTRAL3.tre
backbone_all932_ASTRAL3.tre
backbone_Subset01_ASTRAL3.tre
backbone_Subset02_ASTRAL3.tre
backbone_Subset03_ASTRAL3.tre
backbone_Subset04_ASTRAL3.tre
backbone_Subset05_ASTRAL3.tre
backbone_Subset06_ASTRAL3.tre
backbone_Subset07_ASTRAL3.tre
backbone_Subset08_ASTRAL3.tre
backbone_Subset09_ASTRAL3.tre
backbone_Subset10_ASTRAL3.tre
backbone_Subset11_ASTRAL3.tre
backbone_Subset12_ASTRAL3.tre
-"Chronograms" folder: trees calibrated in RelTime and MCMCTree for the entire matrix and each subset using phylograms as inputs with 164 species (Newick format):
CalibratedTree_backbone_MCMCTree_matrix75_ASTRAL.tre
CalibratedTree_backbone_MCMCTree_matrix75_RAXML.tre
CalibratedTree_backbone_MCMCTree_matrix90_ASTRAL.tre
CalibratedTree_backbone_MCMCTree_matrix90_RAXML.tre
CalibratedTree_backbone_MCMCTree_S01_ASTRAL.tre
CalibratedTree_backbone_MCMCTree_S01_RAXML.tre
CalibratedTree_backbone_MCMCTree_S02_ASTRAL.tre
CalibratedTree_backbone_MCMCTree_S02_RAXML.tre
CalibratedTree_backbone_MCMCTree_S03_ASTRAL.tre
CalibratedTree_backbone_MCMCTree_S03_RAXML.tre
CalibratedTree_backbone_MCMCTree_S04_ASTRAL.tre
CalibratedTree_backbone_MCMCTree_S04_RAXML.tre
CalibratedTree_backbone_MCMCTree_S05_ASTRAL.tre
CalibratedTree_backbone_MCMCTree_S05_RAXML.tre
CalibratedTree_backbone_MCMCTree_S06_ASTRAL.tre
CalibratedTree_backbone_MCMCTree_S06_RAXML.tre
CalibratedTree_backbone_MCMCTree_S07_ASTRAL.tre
CalibratedTree_backbone_MCMCTree_S07_RAXML.tre
CalibratedTree_backbone_MCMCTree_S08_ASTRAL.tre
CalibratedTree_backbone_MCMCTree_S08_RAXML.tre
CalibratedTree_backbone_MCMCTree_S09_ASTRAL.tre
CalibratedTree_backbone_MCMCTree_S09_RAXML.tre
CalibratedTree_backbone_MCMCTree_S10_ASTRAL.tre
CalibratedTree_backbone_MCMCTree_S10_RAXML.tre
CalibratedTree_backbone_MCMCTree_S11_ASTRAL.tre
CalibratedTree_backbone_MCMCTree_S11_RAXML.tre
CalibratedTree_backbone_MCMCTree_S12_ASTRAL.tre
CalibratedTree_backbone_MCMCTree_S12_RAXML.tre
CalibratedTree_backbone_RelTime_matrix75_ASTRAL.tre
CalibratedTree_backbone_RelTime_matrix75_RAXML.tre
CalibratedTree_backbone_RelTime_matrix90_ASTRAL.tre
CalibratedTree_backbone_RelTime_matrix90_RAXML.tre
CalibratedTree_backbone_RelTime_DNA_S01_ASTRAL.tre
CalibratedTree_backbone_RelTime_DNA_S02_ASTRAL.tre
CalibratedTree_backbone_RelTime_DNA_S03_ASTRAL.tre
CalibratedTree_backbone_RelTime_DNA_S04_ASTRAL.tre
CalibratedTree_backbone_RelTime_DNA_S05_ASTRAL.tre
CalibratedTree_backbone_RelTime_DNA_S06_ASTRAL.tre
CalibratedTree_backbone_RelTime_DNA_S07_ASTRAL.tre
CalibratedTree_backbone_RelTime_DNA_S08_ASTRAL.tre
CalibratedTree_backbone_RelTime_DNA_S09_ASTRAL.tre
CalibratedTree_backbone_RelTime_DNA_S10_ASTRAL.tre
CalibratedTree_backbone_RelTime_DNA_S11_ASTRAL.tre
CalibratedTree_backbone_RelTime_DNA_S12_ASTRAL.tre
CalibratedTree_backbone_RelTime_S01_RAXML.tre
CalibratedTree_backbone_RelTime_S02_RAXML.tre
CalibratedTree_backbone_RelTime_S03_RAXML.tre
CalibratedTree_backbone_RelTime_S04_RAXML.tre
CalibratedTree_backbone_RelTime_S05_RAXML.tre
CalibratedTree_backbone_RelTime_S06_RAXML.tre
CalibratedTree_backbone_RelTime_S07_RAXML.tre
CalibratedTree_backbone_RelTime_S08_RAXML.tre
CalibratedTree_backbone_RelTime_S09_RAXML.tre
CalibratedTree_backbone_RelTime_S10_RAXML.tre
CalibratedTree_backbone_RelTime_S11_RAXML.tre
CalibratedTree_backbone_RelTime_S12_RAXML.tre
->"expanded_trees" folder:
-"Phylograms" folder: trees inferred in RAxML and ASTRAL-III for the entire matrix and each subset with 164 species (Newick format):
Expanded_matrix75_RAXML_bestTree.tre
Expanded_matrix90_RAXML_bestTree.tre
Expanded_S01_RAXML_bestTree.tre
Expanded_S02_RAXML_bestTree.tre
Expanded_S03_RAXML_bestTree.tre
Expanded_S04_RAXML_bestTree.tre
Expanded_S05_RAXML_bestTree.tre
Expanded_S06_RAXML_bestTree.tre
Expanded_S07_RAXML_bestTree.tre
Expanded_S08_RAXML_bestTree.tre
Expanded_S09_RAXML_bestTree.tre
Expanded_S10_RAXML_bestTree.tre
Expanded_S11_RAXML_bestTree.tre
Expanded_S12_RAXML_bestTree.tre
Expanded_matrix75_ASTRAL_bestTree.tre
Expanded_matrix90_ASTRAL_bestTree.tre
Expanded_S01_ASTRAL_bestTree.tre
Expanded_S02_ASTRAL_bestTree.tre
Expanded_S03_ASTRAL_bestTree.tre
Expanded_S04_ASTRAL_bestTree.tre
Expanded_S05_ASTRAL_bestTree.tre
Expanded_S06_ASTRAL_bestTree.tre
Expanded_S07_ASTRAL_bestTree.tre
Expanded_S08_ASTRAL_bestTree.tre
Expanded_S09_ASTRAL_bestTree.tre
Expanded_S10_ASTRAL_bestTree.tre
Expanded_S11_ASTRAL_bestTree.tre
Expanded_S12_ASTRAL_bestTree.tre
-"Chronograms" folder: trees calibrated in RelTime and MCMCTree for the entire matrix and each subset using phylograms as inputs with 164 species (Newick format):
CalibratedTree_Expanded_MCMCTree_S01_ASTRAL.tre
CalibratedTree_Expanded_MCMCTree_S01_RAXML.tre
CalibratedTree_Expanded_MCMCTree_S02_ASTRAL.tre
CalibratedTree_Expanded_MCMCTree_S02_RAXML.tre
CalibratedTree_Expanded_MCMCTree_S03_ASTRAL.tre
CalibratedTree_Expanded_MCMCTree_S03_RAXML.tre
CalibratedTree_Expanded_MCMCTree_S04_ASTRAL.tre
CalibratedTree_Expanded_MCMCTree_S04_RAXML.tre
CalibratedTree_Expanded_MCMCTree_S05_ASTRAL.tre
CalibratedTree_Expanded_MCMCTree_S05_RAXML.tre
CalibratedTree_Expanded_MCMCTree_S06_ASTRAL.tre
CalibratedTree_Expanded_MCMCTree_S06_RAXML.tre
CalibratedTree_Expanded_MCMCTree_S07_ASTRAL.tre
CalibratedTree_Expanded_MCMCTree_S07_RAXML.tre
CalibratedTree_Expanded_MCMCTree_S08_ASTRAL.tre
CalibratedTree_Expanded_MCMCTree_S08_RAXML.tre
CalibratedTree_Expanded_MCMCTree_S09_ASTRAL.tre
CalibratedTree_Expanded_MCMCTree_S09_RAXML.tre
CalibratedTree_Expanded_MCMCTree_S10_ASTRAL.tre
CalibratedTree_Expanded_MCMCTree_S10_RAXML.tre
CalibratedTree_Expanded_MCMCTree_S11_ASTRAL.tre
CalibratedTree_Expanded_MCMCTree_S11_RAXML.tre
CalibratedTree_Expanded_MCMCTree_S12_ASTRAL.tre
CalibratedTree_Expanded_MCMCTree_S12_RAXML.tre
CalibratedTree_Expanded_MCMCTree_matrix75_ASTRAL.tre
CalibratedTree_Expanded_MCMCTree_matrix75_RAXML.tre
CalibratedTree_Expanded_MCMCTree_matrix90_ASTRAL.tre
CalibratedTree_Expanded_MCMCTree_matrix90_RAXML.tre
CalibratedTree_Expanded_RelTime_DNA_S01_ASTRAL.tre
CalibratedTree_Expanded_RelTime_DNA_S02_ASTRAL.tre
CalibratedTree_Expanded_RelTime_DNA_S03_ASTRAL.tre
CalibratedTree_Expanded_RelTime_DNA_S04_ASTRAL.tre
CalibratedTree_Expanded_RelTime_DNA_S05_ASTRAL.tre
CalibratedTree_Expanded_RelTime_DNA_S06_ASTRAL.tre
CalibratedTree_Expanded_RelTime_DNA_S07_ASTRAL.tre
CalibratedTree_Expanded_RelTime_DNA_S08_ASTRAL.tre
CalibratedTree_Expanded_RelTime_DNA_S09_ASTRAL.tre
CalibratedTree_Expanded_RelTime_DNA_S10_ASTRAL.tre
CalibratedTree_Expanded_RelTime_DNA_S11_ASTRAL.tre
CalibratedTree_Expanded_RelTime_DNA_S12_ASTRAL.tre
CalibratedTree_Expanded_RelTime_DNA_matrix75_ASTRAL.tre
CalibratedTree_Expanded_RelTime_DNA_matrix90_ASTRAL.tre
CalibratedTree_Expanded_RelTime_S01_RAXML.tre
CalibratedTree_Expanded_RelTime_S02_RAXML.tre
CalibratedTree_Expanded_RelTime_S03_RAXML.tre
CalibratedTree_Expanded_RelTime_S04_RAXML.tre
CalibratedTree_Expanded_RelTime_S05_RAXML.tre
CalibratedTree_Expanded_RelTime_S06_RAXML.tre
CalibratedTree_Expanded_RelTime_S07_RAXML.tre
CalibratedTree_Expanded_RelTime_S08_RAXML.tre
CalibratedTree_Expanded_RelTime_S09_RAXML.tre
CalibratedTree_Expanded_RelTime_S10_RAXML.tre
CalibratedTree_Expanded_RelTime_S11_RAXML.tre
CalibratedTree_Expanded_RelTime_S12_RAXML.tre
CalibratedTree_Expanded_RelTime_matrix75_RAXML.tre
CalibratedTree_Expanded_RelTime_matrix90_RAXML.tre
File: Biogeographic_analyses.zip
Description: R scripts, input files (trees and geographic data) for BioGeoBEARS.
-> R scripts to run biogeographic analyses (run them in the following order):
1-Biogeography_script_7areasPlusTethys.R- test different biogeographic models using one tree in BioGeoBEARS
2-Multiple_Trees_7areasPlusTethys.R- fit the best-fit biogeographic models into multiple tree
3-stochastic_mapping_v2.R- Conduct biogeographic stochastic mappings (BSM) based on the best-fit biogeographic model from BioGeoBEARS
4-get_all_states_general.R- gett all states at every node and tip based on BioGeoBEARS BSM results
5-get_individual_cols_general.R- identify individual colonizations, their descendants, and their date
6-count_events_by_bin_general_v2.R- get the lineages per bin for a given region, group, and bin length
7-count_total_colonization_events.R- obtain the total number of colonization events
8-get_mean_col_event_counts.R- combine colonization counts across stochastic maps to make chord plots
9-get_branch_lengths_by_region.R- count the branch lengths reconstructed in a given region across maps to calculate rates
10-plot_chorddiagrams_col_events.R- chord plots: illustration of the colonization counts and rates from the focal area to the rest of the areas
->Input files:
-dispersal_multipliers_7areasPlusTethys.csv- dispersal multiplier matrix for BioGeoBEARS
-dispersal_multipliers_7areasPlusTethys_forBSM.csv- dispersal multiplier matrix for BSM
-Geo_data.csv- distribution data for BioGeoBEARS
-Geo_data_forBSM.csv- distribution data for BSM
-geoglist.csv- list of input distribution files
-outputnames.csv- list of output file names
-families.csv- list of the families to which each species belongs
-timeperiods.csv- time periods
-treelist.csv- list of input tree files
-biogeonames.csv- Distribution data with names, instead of binary (1,0)
-"TREES" folder: contains all the input trees in Newick format:
CalibratedTree_Expanded_RelTime_matrix75_RAXML_BIOGEOBEARS.tre
CalibratedTree_Expanded_RelTime_matrix75_RAXML_BSM.tre
Tree1.Newick
Tree2.Newick
Tree3.Newick
Tree4.Newick
Tree6.Newick
Tree7.Newick
Tree8.Newick
Tree11.Newick
Tree12.Newick
Tree13.Newick
Tree14.Newick
Tree16.Newick
Tree17.Newick
Tree18.Newick
Tree19.Newick
Tree20.Newick
Tree21.Newick
Tree22.Newick
Tree23.Newick
Tree24.Newick
Tree25.Newick
Tree26.Newick
Tree27.Newick
Tree28.Newick
File: Lineage_diversification_rate_analyses.zip
Description: R scripts, input files (trees and geographic data) for BAMM, DR, and GeoHiSSE.
->BAMM analyses (Bayesian Analysis of Macroevolutionary Mixtures):
1. BAMM.R- calculate bamm priors
2. bamm.sh- run BAMM to calculate tip-associated speciation, extinction, and diversification rates. Return to BAMM.R to check if the results converged
-Input files:
-divcontrol- configuration file
-alltrees_notpruned.tre
-alltrees_pruned.tre
-Distribution_Syngnatharia.csv- presence/absence distribution data
->DR statistics analyses:
-DR.R- calculate tip-associated speciation, extinction, and diversification rates
-Input files:
-alltrees_notpruned.tre
-alltrees_pruned.tre
->GeoHiSSE analyses:
-R scripts to run state-dependent diversification analyses (run them in the following order):
1. parallelGeoHiSSE_IP.R- calculate speciation, extinction, and diversification rates between the Indo-Pacific and the Atlantic and eastern Pacific
2. parallelGeoHiSSE_IP+j.R- calculate speciation, extinction, and diversification rates between the Indo-Pacific and the Atlantic and eastern Pacific incorporating the jump-dispersal parameter in the models
3. parallelGeoHiSSE_A.R- calculate speciation, extinction, and diversification rates between the Atlantic and the Indo Pacific and eastern Pacific
4. parallelGeoHiSSE_A+j.R- calculate speciation, extinction, and diversification rates between the Atlantic and the Indo Pacific and eastern Pacific incorporating the jump-dispersal parameter in the models
5. parallelGeoHiSSE_EP.R- calculate speciation, extinction, and diversification rates between the eastern Pacific and the Atlantic and Indo-Pacific
6. parallelGeoHiSSE_EP+j.R- calculate speciation, extinction, and diversification rates between the eastern Pacific and the Atlantic and Indo Pacific incorporating the jump-dispersal parameter in the models
-Input files:
function_parallel_GeoHiSSE.R- parallel function to run GeoHiSSE
function_parallel_GeoHiSSE+j.R- parallel function to run GeoHiSSE incorporation the jump-dispersal parameter in the models
Distribution_Syngnatharia_BetweenRealms.csv- distribution data
alltrees_notpruned.tre
alltrees_pruned.tre
->Once all the analyses (method: BAMM, DR, and GeoHiSSE) are done use the following script (in order) to summarize all results:
1. div_rates_plots_statistics.R- calculate average diversification rates for each tip across all the trees for each method, plot them, and perform statistical analyses (Phylogenetically-corrected non-parametric Kruskal-Wallis test)
-Input files:
-Rates_DRBAMMGeoHiSSE_RelTime.csv- tip-diversification rates for each tree across all the methods
-CalibratedTree_Expanded_RelTime_matrix75_RAXML.tre
2. Correlations.R- correlate mean lineage diversification rates between phylogenies using all 323 taxa (denoted as “not pruned”) and after excluding potential instances of taxonomic over-splitting (denoted as “pruned”; 311 taxa) and dated with two calibration methods, RelTime and MCMCTree
-Input files:
-Divrates_means_all3methods_RelTime.csv- mean lineage diversification rates results for each tip across the different methods based on RelTime trees
-Divrates_means_all3methods_MCMCTree.csv- mean lineage diversification rates results for each tip across the different methods based on MCMCTree trees
File: Morphological_analyses.zip
Description: Body shape and head shape 2D geometric morphometric data (photos and shape files) as well as R scripts and input files for model fitting, morphological evolutionary rates analyses (BAMM), morphological disparity analyses (dispRity), and morphospace occupancy (hypervolumes). For each scheme (Head and Body shape) first run geometric-morphometrics.R script and then BAMM.R script.
->"Head-shape" folder:
1. Headshape_geometric-morphometrics.R- geometric-morphometric analyses: Place landmarks, Procrustes analyses, Morphospaces, morphological disparity with PC and pPC data, quantifying disparity using hypervolumes and pPCA scores, morphological disparity through time analyses (model fitting)
2. Headshape_BAMM.R- calculate priors and run bamm on the terminal bamm.sh (same as for lineage diversification analyses), plot tip-associated morphological evolutionary rates, perform statistical analyses (Phylogenetically-corrected non-parametric Kruskal-Wallis test)
3. bamm.sh.- runs BAMM to calculate tip-associated morphological evolutionary rates. Return to Headshape_BAMM.R to check if the results converged
-Input files:
-Species_by_area_InputpPCA.csv- species divided by areas
-pPCScores_Head_Mastertree_Byfamily.csv- pPC scores for head dataset
-PCScores_Head_Byfamily_InputpPCA.csv- PC scores for head dataset
-PCScores_Head_Byfamily.csv- PC scores for head dataset organized by family
-PCScores_Head_BetweenAreas.csv- PC scores for the head dataset with distribution information
-Distribution_Syngnatharia.csv- distribution data
-landmarks.txt- homologous landmarks
-curves.txt- curves used
-CalibratedTree_Expanded_RelTime_matrix75_RAXML.tre
-CalibratedTree_Expanded_RelTime_matrix75_RAXML_modified.tre
-alltrees_RelT.tre
-"Photos" folder containing photos for 474 specimens:
Aeoliscus_strigatus_01.jpeg
Aeoliscus_strigatus_02.jpeg
Aeoliscus_strigatus_03.jpeg
Aeoliscus_strigatus_04.jpg
Aeoliscus_strigatus_05.jpg
Anaora_tentaculata_01.jpg
Anaora_tentaculata_02.jpg
Anaora_tentaculata_03.jpg
Aulostomus_chinensis_01.jpeg
Aulostomus_chinensis_02.jpeg
Aulostomus_chinensis_03.jpeg
Aulostomus_chinensis_04.jpeg
Aulostomus_chinensis_05.jpeg
Aulostomus_maculatus_01.JPG
Aulostomus_maculatus_02.jpg
Aulostomus_maculatus_04.jpeg
Bryx_randalli_01.jpg
Callionymidae_sp_01.jpg
Callionymus_australis_01.jpg
Callionymus_bairdi_01.png
Callionymus_bairdi_03.jpg
Callionymus_bairdi_04.jpg
Callionymus_bairdi_05.jpg
Callionymus_belcheri_01.jpg
Callionymus_belcheri_02.jpg
Callionymus_belcheri_03.jpeg
Callionymus_calcaratus_01.jpeg
Callionymus_curvicornis_01.jpg
Callionymus_curvicornis_02.jpg
Callionymus_curvicornis_03.jpg
Callionymus_curvicornis_04.jpg
Callionymus_delicatulus_02.jpg
Callionymus_grossi_01.jpg
Callionymus_limiceps_01.jpeg
Callionymus_lunatus_01.jpg
Callionymus_lunatus_02.jpg
Callionymus_lunatus_03.jpg
Callionymus_lunatus_04.jpg
Callionymus_marquesensis_01.jpg
Callionymus_marquesensis_02.jpeg
Callionymus_marquesensis_03.jpeg
Callionymus_marquesensis_04.jpg
Callionymus_marquesensis_05.jpeg
Callionymus_moretonensis_01.jpg
Callionymus_moretonensis_02.jpg
Callionymus_ogilbyi_01.jpg
Callionymus_russelli_01.jpg
Callionymus_russelli_02.jpg
Callionymus_russelli_03.jpg
Callionymus_scaber_01.jpg
Callionymus_scaber_02.jpg
Callionymus_scaber_03.jpeg
Callionymus_sereti_01.jpg
Callionymus_sp1_01.jpg
Callionymus_sp2_01.JPG
Centriscops_humerosus_01.jpg
Centriscops_humerosus_02.jpg
Centriscops_humerosus_03.jpg
Centriscops_humerosus_04.jpg
Centriscus_cristatus_01.jpg
Centriscus_cristatus_02.jpg
Centriscus_scutatus_01.jpeg
Centriscus_scutatus_02.jpg
Centriscus_scutatus_03.jpg
Centriscus_scutatus_04.jpg
Centriscus_scutatus_05.jpeg
Choeroichthys_sculptus_01.jpg
Choeroichthys_sculptus_02.jpg
Corythoichthys_amplexus_02.jpg
Corythoichthys_amplexus_03.jpg
Corythoichthys_amplexus_04.jpg
Corythoichthys_amplexus_05.jpg
Corythoichthys_flavofasciatus_01.jpg
Corythoichthys_flavofasciatus_02.jpg
Corythoichthys_haematopterus_01.jpg
Corythoichthys_haematopterus_02.jpg
Corythoichthys_haematopterus_03.jpg
Corythoichthys_intestinalis_02.jpg
Corythoichthys_intestinalis_03.jpg
Corythoichthys_intestinalis_04.jpg
Corythoichthys_schultzi_02.jpg
Corythoichthys_schultzi_03.jpg
Corythoichthys_schultzi_04.jpg
Cosmocampus_albirostris_01.JPG
Cosmocampus_albirostris_02.JPG
Cosmocampus_albirostris_03.jpg
Cosmocampus_albirostris_04.JPG
Cosmocampus_arctus_01.jpg
Cosmocampus_elucens_01.JPG
Cosmocampus_elucens_02.JPG
Cosmocampus_elucens_03.JPG
Cosmocampus_elucens_04.JPG
Dactyloptena_orientalis_01.jpeg
Dactyloptena_orientalis_02.jpg
Dactyloptena_orientalis_03.jpg
Dactyloptena_orientalis_04.jpg
Dactyloptena_orientalis_05.JPG
Dactyloptena_papilio_01.jpeg
Dactyloptena_papilio_02.jpg
Dactyloptena_peterseni_01.jpeg
Dactyloptena_peterseni_03.jpeg
Dactylopterus_volitans_01.jpg
Dactylopterus_volitans_02.JPG
Dactylopterus_volitans_03.jpg
Dactylopterus_volitans_04.JPG
Dactylopus_dactylopus_01.jpeg
Dactylopus_dactylopus_02.jpeg
Dactylopus_dactylopus_03.jpeg
Dactylopus_dactylopus_04.jpeg
Dactylopus_dactylopus_05.jpeg
Diplogrammus_goramensis_01.jpg
Diplogrammus_goramensis_02.jpg
Diplogrammus_goramensis_03.jpeg
Diplogrammus_pauciradiatus_01.jpg
Diplogrammus_pauciradiatus_02.jpg
Diplogrammus_pauciradiatus_03.jpg
Diplogrammus_pauciradiatus_04.jpg
Doryichthys_boaja_01.jpg
Doryichthys_boaja_02.jpg
Doryichthys_boaja_03.jpg
Doryichthys_boaja_04.jpg
Doryichthys_martensii_01.jpg
Doryichthys_martensii_02.jpg
Doryichthys_martensii_03.jpg
Doryrhamphus_excisus_01.jpg
Doryrhamphus_excisus_02.jpg
Doryrhamphus_excisus_04.jpg
Doryrhamphus_janssi_01.jpg
Doryrhamphus_janssi_02.jpg
Doryrhamphus_janssi_03.jpg
Doryrhamphus_melanopleura_01.jpg
Doryrhamphus_melanopleura_02.jpg
Doryrhamphus_melanopleura_03.jpg
Draconetta_xenica_01.jpeg
Draconetta_xenica_02.jpeg
Draculo_mirabilis_01.jpg
Draculo_mirabilis_02.jpg
Dunckerocampus_dactyliophorus_01.jpg
Dunckerocampus_pessuliferus_01.jpg
Enneacampus_ansorgii_01.jpg
Entelurus_aequoreus_01.jpg
Eurypegasus_draconis_01.jpg
Eurypegasus_draconis_02.jpg
Eurypegasus_draconis_03.jpg
Eurypegasus_draconis_04.jpg
Festucalex_wassi_01.jpg
Filicampus_tigris_01.jpg
Fistularia_commersonii_01.JPG
Fistularia_commersonii_02.jpeg
Fistularia_corneta_01.jpg
Fistularia_corneta_02.JPG
Fistularia_corneta_03.JPG
Fistularia_petimba_01.jpg
Fistularia_petimba_02.JPG
Fistularia_petimba_03.JPG
Fistularia_tabacaria_01.jpg
Fistularia_tabacaria_02.JPG
Fistularia_tabacaria_03.JPG
Fistularia_tabacaria_04.JPG
Halicampus_crinitus_01.png
Halicampus_dunckeri_01.jpg
Halicampus_dunckeri_02.jpg
Haliichthys_taeniophorus_01.jpg
Hippichthys_penicillus_01.jpg
Hippichthys_penicillus_02.jpg
Hippichthys_penicillus_03.jpg
Hippocampus_abdominalis_01.jpg
Hippocampus_abdominalis_02.jpg
Hippocampus_abdominalis_03.jpg
Hippocampus_abdominalis_04.jpg
Hippocampus_barbouri_01.jpg
Hippocampus_comes_01.jpg
Hippocampus_erectus_01.jpg
Hippocampus_erectus_02.jpg
Hippocampus_erectus_03.jpg
Hippocampus_erectus_04.jpg
Hippocampus_histrix_01.jpg
Hippocampus_histrix_02.jpg
Hippocampus_ingens_01.jpg
Hippocampus_ingens_02.JPG
Hippocampus_ingens_03.JPG
Hippocampus_ingens_04.jpg
Hippocampus_ingens_05.JPG
Hippocampus_kelloggi_01.jpg
Hippocampus_kuda_01.jpg
Hippocampus_kuda_02.jpg
Hippocampus_kuda_03.jpg
Hippocampus_kuda_04.jpg
Hippocampus_reidi_01.jpg
Hippocampus_reidi_02.JPG
Hippocampus_subelongatus_01.jpg
Hippocampus_zosterae_01.jpg
Hippocampus_zosterae_02.jpg
Hippocampus_zosterae_03.jpg
Hypselognathus_rostratus_01.jpg
Idiotropiscis_lumnitzeri_01.jpg
Idiotropiscis_lumnitzeri_02.png
Macroramphosus_gracilis_01.jpg
Macroramphosus_gracilis_02.jpg
Macroramphosus_gracilis_03.jpg
Macroramphosus_gracilis_04.jpg
Macroramphosus_scolopax_01.jpg
Macroramphosus_scolopax_02.jpg
Macroramphosus_scolopax_03.png
Macroramphosus_scolopax_04.jpg
Macroramphosus_scolopax_05.jpeg
Micrognathus_andersonii_01.jpg
Micrognathus_andersonii_02.jpg
Micrognathus_andersonii_03.jpg
Microphis_brachyurus_01.jpg
Microphis_brachyurus_02.jpg
Microphis_brachyurus_03.jpg
Microphis_brachyurus_04.jpg
Microphis_lineatus_01.jpg
Mulloidichthys_dentatus_01.JPG
Mulloidichthys_dentatus_02.JPG
Mulloidichthys_dentatus_03.jpg
Mulloidichthys_dentatus_04.JPG
Mulloidichthys_flavolineatus_01.jpeg
Mulloidichthys_flavolineatus_02.jpeg
Mulloidichthys_flavolineatus_03.jpeg
Mulloidichthys_flavolineatus_04.jpeg
Mulloidichthys_martinicus_01.JPG
Mulloidichthys_martinicus_02.JPG
Mulloidichthys_martinicus_03.JPG
Mulloidichthys_martinicus_04.JPG
Mulloidichthys_martinicus_05.jpeg
Mulloidichthys_vanicolensis_01.jpeg
Mulloidichthys_vanicolensis_02.jpeg
Mulloidichthys_vanicolensis_03.jpg
Mulloidichthys_vanicolensis_04.jpg
Mulloidichthys_vanicolensis_05.jpg
Mullus_argentinae_01.jpg
Mullus_argentinae_02.jpg
Mullus_auratus_01.jpg
Mullus_auratus_02.jpg
Mullus_auratus_03.jpg
Mullus_auratus_04.jpg
Nerophis_ophidion_01.jpg
Nerophis_ophidion_02.jpg
Nerophis_ophidion_03.jpg
Notopogon_fernandezianus_01.jpg
Notopogon_fernandezianus_02.jpg
Notopogon_fernandezianus_03.jpg
Notopogon_lilliei_01.jpg
Notopogon_lilliei_02.jpg
Notopogon_lilliei_03.jpg
Notopogon_xenosoma_01.jpg
Notopogon_xenosoma_02.jpg
Notopogon_xenosoma_03.jpg
Parupeneus_barberinoides_01.jpeg
Parupeneus_barberinoides_02.jpeg
Parupeneus_barberinoides_03.jpeg
Parupeneus_barberinoides_04.jpeg
Parupeneus_barberinoides_05.jpeg
Parupeneus_barberinus_01.jpeg
Parupeneus_barberinus_02.jpeg
Parupeneus_barberinus_03.jpeg
Parupeneus_barberinus_04.jpeg
Parupeneus_barberinus_05.jpeg
Parupeneus_crassilabris_01.jpeg
Parupeneus_crassilabris_02.jpeg
Parupeneus_crassilabris_03.jpeg
Parupeneus_crassilabris_04.jpeg
Parupeneus_cyclostomus_01.jpeg
Parupeneus_cyclostomus_02.jpeg
Parupeneus_cyclostomus_03.jpeg
Parupeneus_cyclostomus_04.jpeg
Parupeneus_cyclostomus_05.jpeg
Parupeneus_forsskali_01.jpeg
Parupeneus_forsskali_02.jpg
Parupeneus_forsskali_03.jpg
Parupeneus_forsskali_04.jpg
Parupeneus_forsskali_05.jpg
Parupeneus_inayatae_01.jpg
Parupeneus_indicus_01.jpeg
Parupeneus_indicus_02.jpeg
Parupeneus_indicus_03.jpeg
Parupeneus_indicus_04.jpeg
Parupeneus_indicus_05.jpeg
Parupeneus_insularis_01.jpeg
Parupeneus_insularis_02.jpeg
Parupeneus_insularis_03.jpeg
Parupeneus_insularis_04.jpeg
Parupeneus_insularis_05.jpeg
Parupeneus_jansenii_01.png
Parupeneus_jansenii_02.png
Parupeneus_jansenii_03.jpg
Parupeneus_multifasciatus_01.JPG
Parupeneus_multifasciatus_02.jpeg
Parupeneus_multifasciatus_03.JPG
Parupeneus_multifasciatus_04.jpeg
Parupeneus_multifasciatus_05.jpeg
Parupeneus_pleurostigma_01.jpeg
Parupeneus_procerigena_01.png
Parupeneus_procerigena_02.jpg
Parupeneus_rubescens_01.jpg
Parupeneus_rubescens_02.JPG
Parupeneus_rubescens_03.jpg
Parupeneus_rubescens_04.jpg
Parupeneus_rubescens_05.jpg
Parupeneus_trifasciatus_01.jpg
Parupeneus_trifasciatus_02.jpg
Parupeneus_trifasciatus_03.jpg
Pegasus_tetrabelos_01.jpg
Pegasus_volitans_01.png
Pegasus_volitans_02.jpg
Pegasus_volitans_03.jpg
Pegasus_volitans_04.jpg
Pegasus_volitans_05.jpg
Phycodurus_eques_01.jpg
Phyllopteryx_taeniolatus_01.jpg
Pseudophallus_starksii_01.jpg
Pseudophallus_starksii_02.jpg
Pseudophallus_starksii_03.jpg
Pseudupeneus_grandisquamis_01.jpg
Pseudupeneus_grandisquamis_02.jpg
Pseudupeneus_grandisquamis_03.jpg
Pseudupeneus_grandisquamis_04.jpg
Pseudupeneus_grandisquamis_05.jpg
Pseudupeneus_maculatus_01.JPG
Pseudupeneus_maculatus_02.JPG
Pseudupeneus_maculatus_03.jpg
Pseudupeneus_maculatus_04.jpg
Pseudupeneus_maculatus_05.jpg
Pseudupeneus_prayensis_01.jpg
Pseudupeneus_prayensis_02.jpg
Pseudupeneus_prayensis_03.jpg
Pseudupeneus_prayensis_04.jpg
Pseudupeneus_prayensis_05.jpg
Siokunichthys_nigrolineatus_01.jpg
Siokunichthys_nigrolineatus_02.jpg
Solegnathus_guentheri_01.jpg
Solegnathus_hardwickii_01.jpg
Solegnathus_hardwickii_02.jpg
Solegnathus_robustus_01.jpg
Solegnathus_spinosissimus_01.JPG
Solegnathus_spinosissimus_02.jpg
Solenostomus_cyanopterus_01.jpg
Solenostomus_cyanopterus_02.jpg
Solenostomus_paradoxus_01.jpg
Solenostomus_paradoxus_02.jpg
Solenostomus_paradoxus_03.jpg
Synchiropus_agassizii_01.jpg
Synchiropus_agassizii_02.jpg
Synchiropus_agassizii_03.jpg
Synchiropus_agassizii_04.jpg
Synchiropus_agassizii_05.jpg
Synchiropus_altivelis_01.jpg
Synchiropus_altivelis_02.jpg
Synchiropus_altivelis_03.jpg
Synchiropus_altivelis_04.jpg
Synchiropus_altivelis_05.jpg
Synchiropus_apricus_01.jpg
Synchiropus_atrilabiatus_01.jpg
Synchiropus_atrilabiatus_02.jpg
Synchiropus_atrilabiatus_03.jpg
Synchiropus_atrilabiatus_04.jpg
Synchiropus_atrilabiatus_05.jpg
Synchiropus_calauropomus_01.jpeg
Synchiropus_goodenbeani_01.jpg
Synchiropus_goodenbeani_02.png
Synchiropus_goodenbeani_03.jpg
Synchiropus_goodenbeani_04.jpg
Synchiropus_goodenbeani_05.jpg
Synchiropus_masudai_01.jpg
Synchiropus_morrisoni_01.jpeg
Synchiropus_morrisoni_02.jpeg
Synchiropus_morrisoni_03.jpeg
Synchiropus_morrisoni_04.jpeg
Synchiropus_morrisoni_05.jpg
Synchiropus_moyeri_01.jpg
Synchiropus_moyeri_02.jpg
Synchiropus_moyeri_03.jpg
Synchiropus_ocellatus_01.jpeg
Synchiropus_ocellatus_02.jpg
Synchiropus_ocellatus_03.jpg
Synchiropus_ocellatus_04.jpg
Synchiropus_ocellatus_05.jpeg
Synchiropus_phaeton_01.JPG
Synchiropus_phaeton_02.jpg
Synchiropus_phaeton_03.jpg
Synchiropus_phaeton_04.jpg
Synchiropus_picturatus_01.jpg
Synchiropus_picturatus_02.jpg
Synchiropus_rameus_01.jpeg
Synchiropus_rameus_02.jpg
Synchiropus_rameus_03.jpg
Synchiropus_sp_01.jpeg
Synchiropus_splendidus_01.jpeg
Synchiropus_splendidus_02.jpeg
Synchiropus_splendidus_03.jpg
Synchiropus_splendidus_04.jpg
Synchiropus_splendidus_05.jpg
Synchiropus_stellatus_01.jpeg
Synchiropus_stellatus_02.jpg
Synchiropus_stellatus_03.jpg
Synchiropus_stellatus_04.jpg
Syngnathoides_biaculeatus_02.jpg
Syngnathoides_biaculeatus_03.jpg
Syngnathoides_biaculeatus_04.jpg
Syngnathus_abaster_01.jpg
Syngnathus_abaster_02.jpg
Syngnathus_abaster_03.jpg
Syngnathus_acus_01.jpg
Syngnathus_acus_02.jpg
Syngnathus_auliscus_01.jpg
Syngnathus_auliscus_02.jpg
Syngnathus_auliscus_03.jpg
Syngnathus_californiensis_01.jpg
Syngnathus_californiensis_02.jpg
Syngnathus_californiensis_03.jpg
Syngnathus_californiensis_04.jpg
Syngnathus_exilis_01.jpg
Syngnathus_floridae_01.jpg
Syngnathus_floridae_02.jpg
Syngnathus_floridae_03.jpg
Syngnathus_fuscus_02.png
Syngnathus_fuscus_03.jpg
Syngnathus_leptorhynchus_01.jpg
Syngnathus_leptorhynchus_02.jpg
Syngnathus_leptorhynchus_03.jpg
Syngnathus_louisianae_01.jpg
Syngnathus_louisianae_02.jpg
Syngnathus_pelagicus_01.jpg
Syngnathus_pelagicus_02.jpg
Syngnathus_pelagicus_03.jpg
Syngnathus_pelagicus_04.jpg
Syngnathus_rostellatus_01.jpg
Syngnathus_rostellatus_02.jpg
Syngnathus_rostellatus_03.jpg
Syngnathus_scovelli_01.jpg
Syngnathus_scovelli_02.jpg
Syngnathus_scovelli_03.jpg
Syngnathus_springeri_01.jpg
Syngnathus_springeri_02.jpg
Syngnathus_taenionotus_01.jpg
Syngnathus_typhle_01.jpg
Trachyrhamphus_bicoarctatus_01.jpg
Trachyrhamphus_bicoarctatus_02.jpg
Upeneichthys_lineatus_01.jpg
Upeneichthys_lineatus_02.jpg
Upeneichthys_lineatus_03.jpg
Upeneichthys_stotti_01.jpeg
Upeneichthys_vlamingii_01.jpeg
Upeneus_asymmetricus_01.jpeg
Upeneus_asymmetricus_02.jpg
Upeneus_australiae_01.jpeg
Upeneus_australiae_02.jpg
Upeneus_filifer_01.jpg
Upeneus_guttatus_01.jpg
Upeneus_guttatus_02.jpg
Upeneus_guttatus_03.jpg
Upeneus_guttatus_04.jpg
Upeneus_guttatus_05.jpg
Upeneus_japonicus_01.jpg
Upeneus_japonicus_02.jpg
Upeneus_japonicus_03.jpg
Upeneus_japonicus_04.jpg
Upeneus_moluccensis_01.jpg
Upeneus_moluccensis_02.jpg
Upeneus_moluccensis_03.jpg
Upeneus_nigromarginatus_01.jpg
Upeneus_quadrilineatus_01.jpg
Upeneus_quadrilineatus_02.jpg
Upeneus_quadrilineatus_03.jpg
Upeneus_sulphureus_01.jpeg
Upeneus_sundaicus_01.jpeg
Upeneus_torres_01.jpeg
Upeneus_tragula_01.jpeg
Vanacampus_phillipi_01.jpg
Vanacampus_phillipi_02.jpg
Vanacampus_phillipi_04.jpg
Vanacampus_poecilolaemus_01.jpg
-"Shapes" folder containing digitalized data for 474 specimens after placing landmarks and curves on the photos:
Aeoliscus_strigatus_01.txt
Aeoliscus_strigatus_02.txt
Aeoliscus_strigatus_03.txt
Aeoliscus_strigatus_04.txt
Aeoliscus_strigatus_05.txt
Anaora_tentaculata_01.txt
Anaora_tentaculata_02.txt
Anaora_tentaculata_03.txt
Aulostomus_chinensis_01.txt
Aulostomus_chinensis_02.txt
Aulostomus_chinensis_03.txt
Aulostomus_chinensis_04.txt
Aulostomus_chinensis_05.txt
Aulostomus_maculatus_01.txt
Aulostomus_maculatus_02.txt
Aulostomus_maculatus_04.txt
Bryx_randalli_01.txt
Callionymidae_sp_01.txt
Callionymus_australis_01.txt
Callionymus_bairdi_01.txt
Callionymus_bairdi_03.txt
Callionymus_bairdi_04.txt
Callionymus_bairdi_05.txt
Callionymus_belcheri_01.txt
Callionymus_belcheri_02.txt
Callionymus_belcheri_03.txt
Callionymus_calcaratus_01.txt
Callionymus_curvicornis_01.txt
Callionymus_curvicornis_02.txt
Callionymus_curvicornis_03.txt
Callionymus_curvicornis_04.txt
Callionymus_delicatulus_02.txt
Callionymus_grossi_01.txt
Callionymus_limiceps_01.txt
Callionymus_lunatus_01.txt
Callionymus_lunatus_02.txt
Callionymus_lunatus_03.txt
Callionymus_lunatus_04.txt
Callionymus_marquesensis_01.txt
Callionymus_marquesensis_02.txt
Callionymus_marquesensis_03.txt
Callionymus_marquesensis_04.txt
Callionymus_marquesensis_05.txt
Callionymus_moretonensis_01.txt
Callionymus_moretonensis_02.txt
Callionymus_ogilbyi_01.txt
Callionymus_russelli_01.txt
Callionymus_russelli_02.txt
Callionymus_russelli_03.txt
Callionymus_scaber_01.txt
Callionymus_scaber_02.txt
Callionymus_scaber_03.txt
Callionymus_sereti_01.txt
Callionymus_sp1_01.txt
Callionymus_sp2_01.txt
Centriscops_humerosus_01.txt
Centriscops_humerosus_02.txt
Centriscops_humerosus_03.txt
Centriscops_humerosus_04.txt
Centriscus_cristatus_01.txt
Centriscus_cristatus_02.txt
Centriscus_scutatus_01.txt
Centriscus_scutatus_02.txt
Centriscus_scutatus_03.txt
Centriscus_scutatus_04.txt
Centriscus_scutatus_05.txt
Choeroichthys_sculptus_01.txt
Choeroichthys_sculptus_02.txt
Corythoichthys_amplexus_02.txt
Corythoichthys_amplexus_03.txt
Corythoichthys_amplexus_04.txt
Corythoichthys_amplexus_05.txt
Corythoichthys_flavofasciatus_01.txt
Corythoichthys_flavofasciatus_02.txt
Corythoichthys_haematopterus_01.txt
Corythoichthys_haematopterus_02.txt
Corythoichthys_haematopterus_03.txt
Corythoichthys_intestinalis_02.txt
Corythoichthys_intestinalis_03.txt
Corythoichthys_intestinalis_04.txt
Corythoichthys_schultzi_02.txt
Corythoichthys_schultzi_03.txt
Corythoichthys_schultzi_04.txt
Cosmocampus_albirostris_01.txt
Cosmocampus_albirostris_02.txt
Cosmocampus_albirostris_03.txt
Cosmocampus_albirostris_04.txt
Cosmocampus_arctus_01.txt
Cosmocampus_elucens_01.txt
Cosmocampus_elucens_02.txt
Cosmocampus_elucens_03.txt
Cosmocampus_elucens_04.txt
Dactyloptena_orientalis_01.txt
Dactyloptena_orientalis_02.txt
Dactyloptena_orientalis_03.txt
Dactyloptena_orientalis_04.txt
Dactyloptena_orientalis_05.txt
Dactyloptena_papilio_01.txt
Dactyloptena_papilio_02.txt
Dactyloptena_peterseni_01.txt
Dactyloptena_peterseni_03.txt
Dactylopterus_volitans_01.txt
Dactylopterus_volitans_02.txt
Dactylopterus_volitans_03.txt
Dactylopterus_volitans_04.txt
Dactylopus_dactylopus_01.txt
Dactylopus_dactylopus_02.txt
Dactylopus_dactylopus_03.txt
Dactylopus_dactylopus_04.txt
Dactylopus_dactylopus_05.txt
Diplogrammus_goramensis_01.txt
Diplogrammus_goramensis_02.txt
Diplogrammus_goramensis_03.txt
Diplogrammus_pauciradiatus_01.txt
Diplogrammus_pauciradiatus_02.txt
Diplogrammus_pauciradiatus_03.txt
Diplogrammus_pauciradiatus_04.txt
Doryichthys_boaja_01.txt
Doryichthys_boaja_02.txt
Doryichthys_boaja_03.txt
Doryichthys_boaja_04.txt
Doryichthys_martensii_01.txt
Doryichthys_martensii_02.txt
Doryichthys_martensii_03.txt
Doryrhamphus_excisus_01.txt
Doryrhamphus_excisus_02.txt
Doryrhamphus_excisus_04.txt
Doryrhamphus_janssi_01.txt
Doryrhamphus_janssi_02.txt
Doryrhamphus_janssi_03.txt
Doryrhamphus_melanopleura_01.txt
Doryrhamphus_melanopleura_02.txt
Doryrhamphus_melanopleura_03.txt
Draconetta_xenica_01.txt
Draconetta_xenica_02.txt
Draculo_mirabilis_01.txt
Draculo_mirabilis_02.txt
Dunckerocampus_dactyliophorus_01.txt
Dunckerocampus_pessuliferus_01.txt
Enneacampus_ansorgii_01.txt
Entelurus_aequoreus_01.txt
Eurypegasus_draconis_01.txt
Eurypegasus_draconis_02.txt
Eurypegasus_draconis_03.txt
Eurypegasus_draconis_04.txt
Festucalex_wassi_01.txt
Filicampus_tigris_01.txt
Fistularia_commersonii_01.txt
Fistularia_commersonii_02.txt
Fistularia_corneta_01.txt
Fistularia_corneta_02.txt
Fistularia_corneta_03.txt
Fistularia_petimba_01.txt
Fistularia_petimba_02.txt
Fistularia_petimba_03.txt
Fistularia_tabacaria_01.txt
Fistularia_tabacaria_02.txt
Fistularia_tabacaria_03.txt
Fistularia_tabacaria_04.txt
Halicampus_crinitus_01.txt
Halicampus_dunckeri_01.txt
Halicampus_dunckeri_02.txt
Haliichthys_taeniophorus_01.txt
Hippichthys_penicillus_01.txt
Hippichthys_penicillus_02.txt
Hippichthys_penicillus_03.txt
Hippocampus_abdominalis_01.txt
Hippocampus_abdominalis_02.txt
Hippocampus_abdominalis_03.txt
Hippocampus_abdominalis_04.txt
Hippocampus_barbouri_01.txt
Hippocampus_comes_01.txt
Hippocampus_erectus_01.txt
Hippocampus_erectus_02.txt
Hippocampus_erectus_03.txt
Hippocampus_erectus_04.txt
Hippocampus_histrix_01.txt
Hippocampus_histrix_02.txt
Hippocampus_ingens_01.txt
Hippocampus_ingens_02.txt
Hippocampus_ingens_03.txt
Hippocampus_ingens_04.txt
Hippocampus_ingens_05.txt
Hippocampus_kelloggi_01.txt
Hippocampus_kuda_01.txt
Hippocampus_kuda_02.txt
Hippocampus_kuda_03.txt
Hippocampus_kuda_04.txt
Hippocampus_reidi_01.txt
Hippocampus_reidi_02.txt
Hippocampus_subelongatus_01.txt
Hippocampus_zosterae_01.txt
Hippocampus_zosterae_02.txt
Hippocampus_zosterae_03.txt
Hypselognathus_rostratus_01.txt
Idiotropiscis_lumnitzeri_01.txt
Idiotropiscis_lumnitzeri_02.txt
Macroramphosus_gracilis_01.txt
Macroramphosus_gracilis_02.txt
Macroramphosus_gracilis_03.txt
Macroramphosus_gracilis_04.txt
Macroramphosus_scolopax_01.txt
Macroramphosus_scolopax_02.txt
Macroramphosus_scolopax_03.txt
Macroramphosus_scolopax_04.txt
Macroramphosus_scolopax_05.txt
Micrognathus_andersonii_01.txt
Micrognathus_andersonii_02.txt
Micrognathus_andersonii_03.txt
Microphis_brachyurus_01.txt
Microphis_brachyurus_02.txt
Microphis_brachyurus_03.txt
Microphis_brachyurus_04.txt
Microphis_lineatus_01.txt
Mulloidichthys_dentatus_01.txt
Mulloidichthys_dentatus_02.txt
Mulloidichthys_dentatus_03.txt
Mulloidichthys_dentatus_04.txt
Mulloidichthys_flavolineatus_01.txt
Mulloidichthys_flavolineatus_02.txt
Mulloidichthys_flavolineatus_03.txt
Mulloidichthys_flavolineatus_04.txt
Mulloidichthys_martinicus_01.txt
Mulloidichthys_martinicus_02.txt
Mulloidichthys_martinicus_03.txt
Mulloidichthys_martinicus_04.txt
Mulloidichthys_martinicus_05.txt
Mulloidichthys_vanicolensis_01.txt
Mulloidichthys_vanicolensis_02.txt
Mulloidichthys_vanicolensis_03.txt
Mulloidichthys_vanicolensis_04.txt
Mulloidichthys_vanicolensis_05.txt
Mullus_argentinae_01.txt
Mullus_argentinae_02.txt
Mullus_auratus_01.txt
Mullus_auratus_02.txt
Mullus_auratus_03.txt
Mullus_auratus_04.txt
Nerophis_ophidion_01.txt
Nerophis_ophidion_02.txt
Nerophis_ophidion_03.txt
Notopogon_fernandezianus_01.txt
Notopogon_fernandezianus_02.txt
Notopogon_fernandezianus_03.txt
Notopogon_lilliei_01.txt
Notopogon_lilliei_02.txt
Notopogon_lilliei_03.txt
Notopogon_xenosoma_01.txt
Notopogon_xenosoma_02.txt
Notopogon_xenosoma_03.txt
Parupeneus_barberinoides_01.txt
Parupeneus_barberinoides_02.txt
Parupeneus_barberinoides_03.txt
Parupeneus_barberinoides_04.txt
Parupeneus_barberinoides_05.txt
Parupeneus_barberinus_01.txt
Parupeneus_barberinus_02.txt
Parupeneus_barberinus_03.txt
Parupeneus_barberinus_04.txt
Parupeneus_barberinus_05.txt
Parupeneus_crassilabris_01.txt
Parupeneus_crassilabris_02.txt
Parupeneus_crassilabris_03.txt
Parupeneus_crassilabris_04.txt
Parupeneus_cyclostomus_01.txt
Parupeneus_cyclostomus_02.txt
Parupeneus_cyclostomus_03.txt
Parupeneus_cyclostomus_04.txt
Parupeneus_cyclostomus_05.txt
Parupeneus_forsskali_01.txt
Parupeneus_forsskali_02.txt
Parupeneus_forsskali_03.txt
Parupeneus_forsskali_04.txt
Parupeneus_forsskali_05.txt
Parupeneus_inayatae_01.txt
Parupeneus_indicus_01.txt
Parupeneus_indicus_02.txt
Parupeneus_indicus_03.txt
Parupeneus_indicus_04.txt
Parupeneus_indicus_05.txt
Parupeneus_insularis_01.txt
Parupeneus_insularis_02.txt
Parupeneus_insularis_03.txt
Parupeneus_insularis_04.txt
Parupeneus_insularis_05.txt
Parupeneus_jansenii_01.txt
Parupeneus_jansenii_02.txt
Parupeneus_jansenii_03.txt
Parupeneus_multifasciatus_01.txt
Parupeneus_multifasciatus_02.txt
Parupeneus_multifasciatus_03.txt
Parupeneus_multifasciatus_04.txt
Parupeneus_multifasciatus_05.txt
Parupeneus_pleurostigma_01.txt
Parupeneus_procerigena_01.txt
Parupeneus_procerigena_02.txt
Parupeneus_rubescens_01.txt
Parupeneus_rubescens_02.txt
Parupeneus_rubescens_03.txt
Parupeneus_rubescens_04.txt
Parupeneus_rubescens_05.txt
Parupeneus_trifasciatus_01.txt
Parupeneus_trifasciatus_02.txt
Parupeneus_trifasciatus_03.txt
Pegasus_tetrabelos_01.txt
Pegasus_volitans_01.txt
Pegasus_volitans_02.txt
Pegasus_volitans_03.txt
Pegasus_volitans_04.txt
Pegasus_volitans_05.txt
Phycodurus_eques_01.txt
Phyllopteryx_taeniolatus_01.txt
Pseudophallus_starksii_01.txt
Pseudophallus_starksii_02.txt
Pseudophallus_starksii_03.txt
Pseudupeneus_grandisquamis_01.txt
Pseudupeneus_grandisquamis_02.txt
Pseudupeneus_grandisquamis_03.txt
Pseudupeneus_grandisquamis_04.txt
Pseudupeneus_grandisquamis_05.txt
Pseudupeneus_maculatus_01.txt
Pseudupeneus_maculatus_02.txt
Pseudupeneus_maculatus_03.txt
Pseudupeneus_maculatus_04.txt
Pseudupeneus_maculatus_05.txt
Pseudupeneus_prayensis_01.txt
Pseudupeneus_prayensis_02.txt
Pseudupeneus_prayensis_03.txt
Pseudupeneus_prayensis_04.txt
Pseudupeneus_prayensis_05.txt
Siokunichthys_nigrolineatus_01.txt
Siokunichthys_nigrolineatus_02.txt
Solegnathus_guentheri_01.txt
Solegnathus_hardwickii_01.txt
Solegnathus_hardwickii_02.txt
Solegnathus_robustus_01.txt
Solegnathus_spinosissimus_01.txt
Solegnathus_spinosissimus_02.txt
Solenostomus_cyanopterus_01.txt
Solenostomus_cyanopterus_02.txt
Solenostomus_paradoxus_01.txt
Solenostomus_paradoxus_02.txt
Solenostomus_paradoxus_03.txt
Synchiropus_agassizii_01.txt
Synchiropus_agassizii_02.txt
Synchiropus_agassizii_03.txt
Synchiropus_agassizii_04.txt
Synchiropus_agassizii_05.txt
Synchiropus_altivelis_01.txt
Synchiropus_altivelis_02.txt
Synchiropus_altivelis_03.txt
Synchiropus_altivelis_04.txt
Synchiropus_altivelis_05.txt
Synchiropus_apricus_01.txt
Synchiropus_atrilabiatus_01.txt
Synchiropus_atrilabiatus_02.txt
Synchiropus_atrilabiatus_03.txt
Synchiropus_atrilabiatus_04.txt
Synchiropus_atrilabiatus_05.txt
Synchiropus_calauropomus_01.txt
Synchiropus_goodenbeani_01.txt
Synchiropus_goodenbeani_02.txt
Synchiropus_goodenbeani_03.txt
Synchiropus_goodenbeani_04.txt
Synchiropus_goodenbeani_05.txt
Synchiropus_masudai_01.txt
Synchiropus_morrisoni_01.txt
Synchiropus_morrisoni_02.txt
Synchiropus_morrisoni_03.txt
Synchiropus_morrisoni_04.txt
Synchiropus_morrisoni_05.txt
Synchiropus_moyeri_01.txt
Synchiropus_moyeri_02.txt
Synchiropus_moyeri_03.txt
Synchiropus_ocellatus_01.txt
Synchiropus_ocellatus_02.txt
Synchiropus_ocellatus_03.txt
Synchiropus_ocellatus_04.txt
Synchiropus_ocellatus_05.txt
Synchiropus_phaeton_01.txt
Synchiropus_phaeton_02.txt
Synchiropus_phaeton_03.txt
Synchiropus_phaeton_04.txt
Synchiropus_picturatus_01.txt
Synchiropus_picturatus_02.txt
Synchiropus_rameus_01.txt
Synchiropus_rameus_02.txt
Synchiropus_rameus_03.txt
Synchiropus_sp_01.txt
Synchiropus_splendidus_01.txt
Synchiropus_splendidus_02.txt
Synchiropus_splendidus_03.txt
Synchiropus_splendidus_04.txt
Synchiropus_splendidus_05.txt
Synchiropus_stellatus_01.txt
Synchiropus_stellatus_02.txt
Synchiropus_stellatus_03.txt
Synchiropus_stellatus_04.txt
Syngnathoides_biaculeatus_02.txt
Syngnathoides_biaculeatus_03.txt
Syngnathoides_biaculeatus_04.txt
Syngnathus_abaster_01.txt
Syngnathus_abaster_02.txt
Syngnathus_abaster_03.txt
Syngnathus_acus_01.txt
Syngnathus_acus_02.txt
Syngnathus_auliscus_01.txt
Syngnathus_auliscus_02.txt
Syngnathus_auliscus_03.txt
Syngnathus_californiensis_01.txt
Syngnathus_californiensis_02.txt
Syngnathus_californiensis_03.txt
Syngnathus_californiensis_04.txt
Syngnathus_exilis_01.txt
Syngnathus_floridae_01.txt
Syngnathus_floridae_02.txt
Syngnathus_floridae_03.txt
Syngnathus_fuscus_02.txt
Syngnathus_fuscus_03.txt
Syngnathus_leptorhynchus_01.txt
Syngnathus_leptorhynchus_02.txt
Syngnathus_leptorhynchus_03.txt
Syngnathus_louisianae_01.txt
Syngnathus_louisianae_02.txt
Syngnathus_pelagicus_01.txt
Syngnathus_pelagicus_02.txt
Syngnathus_pelagicus_03.txt
Syngnathus_pelagicus_04.txt
Syngnathus_rostellatus_01.txt
Syngnathus_rostellatus_02.txt
Syngnathus_rostellatus_03.txt
Syngnathus_scovelli_01.txt
Syngnathus_scovelli_02.txt
Syngnathus_scovelli_03.txt
Syngnathus_springeri_01.txt
Syngnathus_springeri_02.txt
Syngnathus_taenionotus_01.txt
Syngnathus_typhle_01.txt
Trachyrhamphus_bicoarctatus_01.txt
Trachyrhamphus_bicoarctatus_02.txt
Upeneichthys_lineatus_01.txt
Upeneichthys_lineatus_02.txt
Upeneichthys_lineatus_03.txt
Upeneichthys_stotti_01.txt
Upeneichthys_vlamingii_01.txt
Upeneus_asymmetricus_01.txt
Upeneus_asymmetricus_02.txt
Upeneus_australiae_01.txt
Upeneus_australiae_02.txt
Upeneus_filifer_01.txt
Upeneus_guttatus_01.txt
Upeneus_guttatus_02.txt
Upeneus_guttatus_03.txt
Upeneus_guttatus_04.txt
Upeneus_guttatus_05.txt
Upeneus_japonicus_01.txt
Upeneus_japonicus_02.txt
Upeneus_japonicus_03.txt
Upeneus_japonicus_04.txt
Upeneus_moluccensis_01.txt
Upeneus_moluccensis_02.txt
Upeneus_moluccensis_03.txt
Upeneus_nigromarginatus_01.txt
Upeneus_quadrilineatus_01.txt
Upeneus_quadrilineatus_02.txt
Upeneus_quadrilineatus_03.txt
Upeneus_sulphureus_01.txt
Upeneus_sundaicus_01.txt
Upeneus_torres_01.txt
Upeneus_tragula_01.txt
Vanacampus_phillipi_01.txt
Vanacampus_phillipi_02.txt
Vanacampus_phillipi_04.txt
Vanacampus_poecilolaemus_01.txt
->"Body-shape" folder:
1. Bodyshape_geometric-morphometrics.R- geometric-morphometric analyses: Place landmarks and curves, Procrustes analyses, Morphospaces, morphological disparity with PC and pPC data, quantifying disparity using hypervolumes and pPCA scores, morphological disparity through time analyses (model fitting)
2. Bodyshape_BAMM.R- calculate priors and run bamm on the terminal bamm.sh (same as for lineage diversification analyses), plot tip-associated morphological evolutionary rates, perform statistical analyses (Phylogenetically-corrected non-parametric Kruskal-Wallis test)
3. bamm.sh- run BAMM to calculate tip-associated morphological evolutionary rates. Return to Bodyshape_BAMM.R to check if the results converged
-Input files:
-Species_by_area_InputpPCA.csv- species divided by areas
-pPCScores_Bodyshape_Mastertree_Byfamily.csv- pPC scores for full-body dataset
-PCScores_BODY_SHAPE_lm_cv_Byfamily_InputpPCA.csv- PC scores for full-body dataset
-PCScores_BodyShape_lm_cv_Byfamily.csv- PC scores for full-body dataset organized by family
-PCScores_BodyShape_lm_cv_BetweenAreas.csv- PC scores for a full-body dataset with distribution information
-Distribution_Syngnatharia.csv- distribution data
-landmarks.txt- homologous landmarks
-curves.txt- curves used
-CalibratedTree_Expanded_RelTime_matrix75_RAXML.tre
-CalibratedTree_Expanded_RelTime_matrix75_RAXML_modified.tre
-alltrees_RelT.tre
-"Photos" folder containing photos for 442 specimens:
Aeoliscus_strigatus_01.jpeg
Aeoliscus_strigatus_02.jpeg
Aeoliscus_strigatus_03.jpeg
Aeoliscus_strigatus_04.jpg
Aeoliscus_strigatus_05.jpg
Anaora_tentaculata_01.jpg
Anaora_tentaculata_02.jpg
Anaora_tentaculata_03.jpg
Aulostomus_chinensis_01.jpeg
Aulostomus_chinensis_02.jpeg
Aulostomus_chinensis_03.jpeg
Aulostomus_chinensis_04.jpeg
Aulostomus_chinensis_05.jpeg
Aulostomus_maculatus_01.JPG
Aulostomus_maculatus_02.jpg
Aulostomus_maculatus_04.jpeg
Bryx_randalli_01.jpg
Callionymidae_sp_01.jpg
Callionymus_australis_01.jpg
Callionymus_bairdi_01.png
Callionymus_bairdi_03.jpg
Callionymus_bairdi_04.jpg
Callionymus_bairdi_05.jpg
Callionymus_belcheri_01.jpg
Callionymus_belcheri_02.jpg
Callionymus_belcheri_03.jpeg
Callionymus_calcaratus_01.jpeg
Callionymus_curvicornis_01.jpg
Callionymus_curvicornis_02.jpg
Callionymus_curvicornis_03.jpg
Callionymus_curvicornis_04.jpg
Callionymus_delicatulus_02.jpg
Callionymus_grossi_01.jpg
Callionymus_limiceps_01.jpeg
Callionymus_lunatus_01.jpg
Callionymus_lunatus_02.jpg
Callionymus_lunatus_03.jpg
Callionymus_lunatus_04.jpg
Callionymus_marquesensis_01.jpg
Callionymus_marquesensis_02.jpeg
Callionymus_marquesensis_03.jpeg
Callionymus_marquesensis_04.jpg
Callionymus_marquesensis_05.jpeg
Callionymus_moretonensis_01.jpg
Callionymus_moretonensis_02.jpg
Callionymus_ogilbyi_01.jpg
Callionymus_russelli_01.jpg
Callionymus_russelli_02.jpg
Callionymus_russelli_03.jpg
Callionymus_scaber_01.jpg
Callionymus_scaber_02.jpg
Callionymus_scaber_03.jpeg
Callionymus_sereti_01.jpg
Callionymus_sp1_01.jpg
Callionymus_sp2_01.JPG
Centriscops_humerosus_01.jpg
Centriscops_humerosus_02.jpg
Centriscops_humerosus_03.jpg
Centriscops_humerosus_04.jpg
Centriscus_cristatus_01.jpg
Centriscus_cristatus_02.jpg
Centriscus_scutatus_01.jpeg
Centriscus_scutatus_02.jpg
Centriscus_scutatus_03.jpg
Centriscus_scutatus_04.jpg
Centriscus_scutatus_05.jpeg
Choeroichthys_sculptus_01.jpg
Choeroichthys_sculptus_02.jpg
Corythoichthys_amplexus_02.jpg
Corythoichthys_amplexus_03.jpg
Corythoichthys_amplexus_04.jpg
Corythoichthys_amplexus_05.jpg
Corythoichthys_flavofasciatus_01.jpg
Corythoichthys_flavofasciatus_02.jpg
Corythoichthys_haematopterus_01.jpg
Corythoichthys_haematopterus_02.jpg
Corythoichthys_haematopterus_03.jpg
Corythoichthys_intestinalis_02.jpg
Corythoichthys_intestinalis_03.jpg
Corythoichthys_intestinalis_04.jpg
Corythoichthys_schultzi_02.jpg
Corythoichthys_schultzi_03.jpg
Corythoichthys_schultzi_04.jpg
Cosmocampus_albirostris_01.JPG
Cosmocampus_albirostris_02.JPG
Cosmocampus_albirostris_03.jpg
Cosmocampus_albirostris_04.JPG
Cosmocampus_arctus_01.jpg
Cosmocampus_elucens_01.JPG
Cosmocampus_elucens_02.JPG
Cosmocampus_elucens_03.JPG
Cosmocampus_elucens_04.JPG
Dactyloptena_orientalis_01.jpeg
Dactyloptena_orientalis_02.jpg
Dactyloptena_orientalis_03.jpg
Dactyloptena_orientalis_04.jpg
Dactyloptena_orientalis_05.JPG
Dactyloptena_papilio_01.jpeg
Dactyloptena_papilio_02.jpg
Dactyloptena_peterseni_01.jpeg
Dactyloptena_peterseni_03.jpeg
Dactylopterus_volitans_01.jpg
Dactylopterus_volitans_02.JPG
Dactylopterus_volitans_03.jpg
Dactylopterus_volitans_04.JPG
Dactylopus_dactylopus_01.jpeg
Dactylopus_dactylopus_02.jpeg
Dactylopus_dactylopus_03.jpeg
Dactylopus_dactylopus_04.jpeg
Dactylopus_dactylopus_05.jpeg
Diplogrammus_goramensis_01.jpg
Diplogrammus_goramensis_02.jpg
Diplogrammus_goramensis_03.jpeg
Diplogrammus_pauciradiatus_01.jpg
Diplogrammus_pauciradiatus_02.jpg
Diplogrammus_pauciradiatus_03.jpg
Diplogrammus_pauciradiatus_04.jpg
Doryichthys_boaja_01.jpg
Doryichthys_boaja_02.jpg
Doryichthys_boaja_03.jpg
Doryichthys_boaja_04.jpg
Doryichthys_martensii_01.jpg
Doryichthys_martensii_02.jpg
Doryichthys_martensii_03.jpg
Doryrhamphus_excisus_01.jpg
Doryrhamphus_excisus_02.jpg
Doryrhamphus_excisus_04.jpg
Doryrhamphus_janssi_01.jpg
Doryrhamphus_janssi_02.jpg
Doryrhamphus_janssi_03.jpg
Doryrhamphus_melanopleura_01.jpg
Doryrhamphus_melanopleura_02.jpg
Doryrhamphus_melanopleura_03.jpg
Draconetta_xenica_01.jpeg
Draconetta_xenica_02.jpeg
Draculo_mirabilis_01.jpg
Draculo_mirabilis_02.jpg
Dunckerocampus_dactyliophorus_01.jpg
Dunckerocampus_pessuliferus_01.jpg
Enneacampus_ansorgii_01.jpg
Entelurus_aequoreus_01.jpg
Eurypegasus_draconis_01.jpg
Eurypegasus_draconis_02.jpg
Eurypegasus_draconis_03.jpg
Eurypegasus_draconis_04.jpg
Festucalex_wassi_01.jpg
Filicampus_tigris_01.jpg
Fistularia_commersonii_01.JPG
Fistularia_commersonii_02.jpeg
Fistularia_corneta_01.jpg
Fistularia_corneta_02.JPG
Fistularia_corneta_03.JPG
Fistularia_petimba_01.jpg
Fistularia_petimba_02.JPG
Fistularia_petimba_03.JPG
Fistularia_tabacaria_01.jpg
Fistularia_tabacaria_02.JPG
Fistularia_tabacaria_03.JPG
Fistularia_tabacaria_04.JPG
Halicampus_crinitus_01.png
Halicampus_dunckeri_01.jpg
Halicampus_dunckeri_02.jpg
Haliichthys_taeniophorus_01.jpg
Hippichthys_penicillus_01.jpg
Hippichthys_penicillus_02.jpg
Hippichthys_penicillus_03.jpg
Hypselognathus_rostratus_01.jpg
Macroramphosus_gracilis_01.jpg
Macroramphosus_gracilis_02.jpg
Macroramphosus_gracilis_03.jpg
Macroramphosus_gracilis_04.jpg
Macroramphosus_scolopax_01.jpg
Macroramphosus_scolopax_02.jpg
Macroramphosus_scolopax_03.png
Macroramphosus_scolopax_04.jpg
Macroramphosus_scolopax_05.jpeg
Micrognathus_andersonii_01.jpg
Micrognathus_andersonii_02.jpg
Micrognathus_andersonii_03.jpg
Microphis_brachyurus_01.jpg
Microphis_brachyurus_02.jpg
Microphis_brachyurus_03.jpg
Microphis_brachyurus_04.jpg
Microphis_lineatus_01.jpg
Mulloidichthys_dentatus_01.JPG
Mulloidichthys_dentatus_02.JPG
Mulloidichthys_dentatus_03.jpg
Mulloidichthys_dentatus_04.JPG
Mulloidichthys_flavolineatus_01.jpeg
Mulloidichthys_flavolineatus_02.jpeg
Mulloidichthys_flavolineatus_03.jpeg
Mulloidichthys_flavolineatus_04.jpeg
Mulloidichthys_martinicus_01.JPG
Mulloidichthys_martinicus_02.JPG
Mulloidichthys_martinicus_03.JPG
Mulloidichthys_martinicus_04.JPG
Mulloidichthys_martinicus_05.jpeg
Mulloidichthys_vanicolensis_01.jpeg
Mulloidichthys_vanicolensis_02.jpeg
Mulloidichthys_vanicolensis_03.jpg
Mulloidichthys_vanicolensis_04.jpg
Mulloidichthys_vanicolensis_05.jpg
Mullus_argentinae_01.jpg
Mullus_argentinae_02.jpg
Mullus_auratus_01.jpg
Mullus_auratus_02.jpg
Mullus_auratus_03.jpg
Mullus_auratus_04.jpg
Nerophis_ophidion_01.jpg
Nerophis_ophidion_02.jpg
Nerophis_ophidion_03.jpg
Notopogon_fernandezianus_01.jpg
Notopogon_fernandezianus_02.jpg
Notopogon_fernandezianus_03.jpg
Notopogon_lilliei_01.jpg
Notopogon_lilliei_02.jpg
Notopogon_lilliei_03.jpg
Notopogon_xenosoma_01.jpg
Notopogon_xenosoma_02.jpg
Notopogon_xenosoma_03.jpg
Parupeneus_barberinoides_01.jpeg
Parupeneus_barberinoides_02.jpeg
Parupeneus_barberinoides_03.jpeg
Parupeneus_barberinoides_04.jpeg
Parupeneus_barberinoides_05.jpeg
Parupeneus_barberinus_01.jpeg
Parupeneus_barberinus_02.jpeg
Parupeneus_barberinus_03.jpeg
Parupeneus_barberinus_04.jpeg
Parupeneus_barberinus_05.jpeg
Parupeneus_crassilabris_01.jpeg
Parupeneus_crassilabris_02.jpeg
Parupeneus_crassilabris_03.jpeg
Parupeneus_crassilabris_04.jpeg
Parupeneus_cyclostomus_01.jpeg
Parupeneus_cyclostomus_02.jpeg
Parupeneus_cyclostomus_03.jpeg
Parupeneus_cyclostomus_04.jpeg
Parupeneus_cyclostomus_05.jpeg
Parupeneus_forsskali_01.jpeg
Parupeneus_forsskali_02.jpg
Parupeneus_forsskali_03.jpg
Parupeneus_forsskali_04.jpg
Parupeneus_forsskali_05.jpg
Parupeneus_inayatae_01.jpg
Parupeneus_indicus_01.jpeg
Parupeneus_indicus_02.jpeg
Parupeneus_indicus_03.jpeg
Parupeneus_indicus_04.jpeg
Parupeneus_indicus_05.jpeg
Parupeneus_insularis_01.jpeg
Parupeneus_insularis_02.jpeg
Parupeneus_insularis_03.jpeg
Parupeneus_insularis_04.jpeg
Parupeneus_insularis_05.jpeg
Parupeneus_jansenii_01.png
Parupeneus_jansenii_02.png
Parupeneus_jansenii_03.jpg
Parupeneus_multifasciatus_01.JPG
Parupeneus_multifasciatus_02.jpeg
Parupeneus_multifasciatus_03.JPG
Parupeneus_multifasciatus_04.jpeg
Parupeneus_multifasciatus_05.jpeg
Parupeneus_pleurostigma_01.jpeg
Parupeneus_procerigena_01.png
Parupeneus_procerigena_02.jpg
Parupeneus_rubescens_01.jpg
Parupeneus_rubescens_02.JPG
Parupeneus_rubescens_03.jpg
Parupeneus_rubescens_04.jpg
Parupeneus_rubescens_05.jpg
Parupeneus_trifasciatus_01.jpg
Parupeneus_trifasciatus_02.jpg
Parupeneus_trifasciatus_03.jpg
Pegasus_tetrabelos_01.jpg
Pegasus_volitans_01.png
Pegasus_volitans_02.jpg
Pegasus_volitans_03.jpg
Pegasus_volitans_04.jpg
Pegasus_volitans_05.jpg
Pseudophallus_starksii_01.jpg
Pseudophallus_starksii_02.jpg
Pseudophallus_starksii_03.jpg
Pseudupeneus_grandisquamis_01.jpg
Pseudupeneus_grandisquamis_02.jpg
Pseudupeneus_grandisquamis_03.jpg
Pseudupeneus_grandisquamis_04.jpg
Pseudupeneus_grandisquamis_05.jpg
Pseudupeneus_maculatus_01.JPG
Pseudupeneus_maculatus_02.JPG
Pseudupeneus_maculatus_03.jpg
Pseudupeneus_maculatus_04.jpg
Pseudupeneus_maculatus_05.jpg
Pseudupeneus_prayensis_01.jpg
Pseudupeneus_prayensis_02.jpg
Pseudupeneus_prayensis_03.jpg
Pseudupeneus_prayensis_04.jpg
Pseudupeneus_prayensis_05.jpg
Siokunichthys_nigrolineatus_01.jpg
Siokunichthys_nigrolineatus_02.jpg
Solegnathus_guentheri_01.jpg
Solegnathus_hardwickii_01.jpg
Solegnathus_hardwickii_02.jpg
Solegnathus_robustus_01.jpg
Solegnathus_spinosissimus_01.JPG
Solegnathus_spinosissimus_02.jpg
Solenostomus_cyanopterus_01.jpg
Solenostomus_cyanopterus_02.jpg
Solenostomus_paradoxus_01.jpg
Solenostomus_paradoxus_02.jpg
Solenostomus_paradoxus_03.jpg
Synchiropus_agassizii_01.jpg
Synchiropus_agassizii_02.jpg
Synchiropus_agassizii_03.jpg
Synchiropus_agassizii_04.jpg
Synchiropus_agassizii_05.jpg
Synchiropus_altivelis_01.jpg
Synchiropus_altivelis_02.jpg
Synchiropus_altivelis_03.jpg
Synchiropus_altivelis_04.jpg
Synchiropus_altivelis_05.jpg
Synchiropus_apricus_01.jpg
Synchiropus_atrilabiatus_01.jpg
Synchiropus_atrilabiatus_02.jpg
Synchiropus_atrilabiatus_03.jpg
Synchiropus_atrilabiatus_04.jpg
Synchiropus_atrilabiatus_05.jpg
Synchiropus_calauropomus_01.jpeg
Synchiropus_goodenbeani_01.jpg
Synchiropus_goodenbeani_02.png
Synchiropus_goodenbeani_03.jpg
Synchiropus_goodenbeani_04.jpg
Synchiropus_goodenbeani_05.jpg
Synchiropus_masudai_01.jpg
Synchiropus_morrisoni_01.jpeg
Synchiropus_morrisoni_02.jpeg
Synchiropus_morrisoni_03.jpeg
Synchiropus_morrisoni_04.jpeg
Synchiropus_morrisoni_05.jpg
Synchiropus_moyeri_01.jpg
Synchiropus_moyeri_02.jpg
Synchiropus_moyeri_03.jpg
Synchiropus_ocellatus_01.jpeg
Synchiropus_ocellatus_02.jpg
Synchiropus_ocellatus_03.jpg
Synchiropus_ocellatus_04.jpg
Synchiropus_ocellatus_05.jpeg
Synchiropus_phaeton_01.JPG
Synchiropus_phaeton_02.jpg
Synchiropus_phaeton_03.jpg
Synchiropus_phaeton_04.jpg
Synchiropus_picturatus_01.jpg
Synchiropus_picturatus_02.jpg
Synchiropus_rameus_01.jpeg
Synchiropus_rameus_02.jpg
Synchiropus_rameus_03.jpg
Synchiropus_sp_01.jpeg
Synchiropus_splendidus_01.jpeg
Synchiropus_splendidus_02.jpeg
Synchiropus_splendidus_03.jpg
Synchiropus_splendidus_04.jpg
Synchiropus_splendidus_05.jpg
Synchiropus_stellatus_01.jpeg
Synchiropus_stellatus_02.jpg
Synchiropus_stellatus_03.jpg
Synchiropus_stellatus_04.jpg
Syngnathoides_biaculeatus_02.jpg
Syngnathoides_biaculeatus_03.jpg
Syngnathoides_biaculeatus_04.jpg
Syngnathus_abaster_01.jpg
Syngnathus_abaster_02.jpg
Syngnathus_abaster_03.jpg
Syngnathus_acus_01.jpg
Syngnathus_acus_02.jpg
Syngnathus_auliscus_01.jpg
Syngnathus_auliscus_02.jpg
Syngnathus_auliscus_03.jpg
Syngnathus_californiensis_01.jpg
Syngnathus_californiensis_02.jpg
Syngnathus_californiensis_03.jpg
Syngnathus_californiensis_04.jpg
Syngnathus_exilis_01.jpg
Syngnathus_floridae_01.jpg
Syngnathus_floridae_02.jpg
Syngnathus_floridae_03.jpg
Syngnathus_fuscus_02.png
Syngnathus_fuscus_03.jpg
Syngnathus_leptorhynchus_01.jpg
Syngnathus_leptorhynchus_02.jpg
Syngnathus_leptorhynchus_03.jpg
Syngnathus_louisianae_01.jpg
Syngnathus_louisianae_02.jpg
Syngnathus_pelagicus_01.jpg
Syngnathus_pelagicus_02.jpg
Syngnathus_pelagicus_03.jpg
Syngnathus_pelagicus_04.jpg
Syngnathus_rostellatus_01.jpg
Syngnathus_rostellatus_02.jpg
Syngnathus_rostellatus_03.jpg
Syngnathus_scovelli_01.jpg
Syngnathus_scovelli_02.jpg
Syngnathus_scovelli_03.jpg
Syngnathus_springeri_01.jpg
Syngnathus_springeri_02.jpg
Syngnathus_taenionotus_01.jpg
Syngnathus_typhle_01.jpg
Trachyrhamphus_bicoarctatus_01.jpg
Trachyrhamphus_bicoarctatus_02.jpg
Upeneichthys_lineatus_01.jpg
Upeneichthys_lineatus_02.jpg
Upeneichthys_lineatus_03.jpg
Upeneichthys_stotti_01.jpeg
Upeneichthys_vlamingii_01.jpeg
Upeneus_asymmetricus_01.jpeg
Upeneus_asymmetricus_02.jpg
Upeneus_australiae_01.jpeg
Upeneus_australiae_02.jpg
Upeneus_filifer_01.jpg
Upeneus_guttatus_01.jpg
Upeneus_guttatus_02.jpg
Upeneus_guttatus_03.jpg
Upeneus_guttatus_04.jpg
Upeneus_guttatus_05.jpg
Upeneus_japonicus_01.jpg
Upeneus_japonicus_02.jpg
Upeneus_japonicus_03.jpg
Upeneus_japonicus_04.jpg
Upeneus_moluccensis_01.jpg
Upeneus_moluccensis_02.jpg
Upeneus_moluccensis_03.jpg
Upeneus_nigromarginatus_01.jpg
Upeneus_quadrilineatus_01.jpg
Upeneus_quadrilineatus_02.jpg
Upeneus_quadrilineatus_03.jpg
Upeneus_sulphureus_01.jpeg
Upeneus_sundaicus_01.jpeg
Upeneus_torres_01.jpeg
Upeneus_tragula_01.jpeg
Vanacampus_phillipi_01.jpg
Vanacampus_phillipi_02.jpg
Vanacampus_phillipi_04.jpg
Vanacampus_poecilolaemus_01.jpg
-"Shapes" folder containing digitalized data for 442 specimens after placing landmarks and curves on the photos:
Aeoliscus_strigatus_01.jpeg
Aeoliscus_strigatus_02.txt
Aeoliscus_strigatus_03.txt
Aeoliscus_strigatus_04.txt
Aeoliscus_strigatus_05.txt
Anaora_tentaculata_01.txt
Anaora_tentaculata_02.txt
Anaora_tentaculata_03.txt
Aulostomus_chinensis_01.txt
Aulostomus_chinensis_02.txt
Aulostomus_chinensis_03.txt
Aulostomus_chinensis_04.txt
Aulostomus_chinensis_05.txt
Aulostomus_maculatus_01.txt
Aulostomus_maculatus_02.txt
Aulostomus_maculatus_04.txt
Bryx_randalli_01.txt
Callionymidae_sp_01.txt
Callionymus_australis_01.txt
Callionymus_bairdi_01.txt
Callionymus_bairdi_03.txt
Callionymus_bairdi_04.txt
Callionymus_bairdi_05.txt
Callionymus_belcheri_01.txt
Callionymus_belcheri_02.txt
Callionymus_belcheri_03.txt
Callionymus_calcaratus_01.txt
Callionymus_curvicornis_01.txt
Callionymus_curvicornis_02.txt
Callionymus_curvicornis_03.txt
Callionymus_curvicornis_04.txt
Callionymus_delicatulus_02.txt
Callionymus_grossi_01.txt
Callionymus_limiceps_01.txt
Callionymus_lunatus_01.txt
Callionymus_lunatus_02.txt
Callionymus_lunatus_03.txt
Callionymus_lunatus_04.txt
Callionymus_marquesensis_01.txt
Callionymus_marquesensis_02.txt
Callionymus_marquesensis_03.txt
Callionymus_marquesensis_04.txt
Callionymus_marquesensis_05.txt
Callionymus_moretonensis_01.txt
Callionymus_moretonensis_02.txt
Callionymus_ogilbyi_01.txt
Callionymus_russelli_01.txt
Callionymus_russelli_02.txt
Callionymus_russelli_03.txt
Callionymus_scaber_01.txt
Callionymus_scaber_02.txt
Callionymus_scaber_03.txt
Callionymus_sereti_01.txt
Callionymus_sp1_01.txt
Callionymus_sp2_01.txt
Centriscops_humerosus_01.txt
Centriscops_humerosus_02.txt
Centriscops_humerosus_03.txt
Centriscops_humerosus_04.txt
Centriscus_cristatus_01.txt
Centriscus_cristatus_02.txt
Centriscus_scutatus_01.txt
Centriscus_scutatus_02.txt
Centriscus_scutatus_03.txt
Centriscus_scutatus_04.txt
Centriscus_scutatus_05.txt
Choeroichthys_sculptus_01.txt
Choeroichthys_sculptus_02.txt
Corythoichthys_amplexus_02.txt
Corythoichthys_amplexus_03.txt
Corythoichthys_amplexus_04.txt
Corythoichthys_amplexus_05.txt
Corythoichthys_flavofasciatus_01.txt
Corythoichthys_flavofasciatus_02.txt
Corythoichthys_haematopterus_01.txt
Corythoichthys_haematopterus_02.txt
Corythoichthys_haematopterus_03.txt
Corythoichthys_intestinalis_02.txt
Corythoichthys_intestinalis_03.txt
Corythoichthys_intestinalis_04.txt
Corythoichthys_schultzi_02.txt
Corythoichthys_schultzi_03.txt
Corythoichthys_schultzi_04.txt
Cosmocampus_albirostris_01.txt
Cosmocampus_albirostris_02.txt
Cosmocampus_albirostris_03.txt
Cosmocampus_albirostris_04.txt
Cosmocampus_arctus_01.txt
Cosmocampus_elucens_01.txt
Cosmocampus_elucens_02.txt
Cosmocampus_elucens_03.txt
Cosmocampus_elucens_04.txt
Dactyloptena_orientalis_01.txt
Dactyloptena_orientalis_02.txt
Dactyloptena_orientalis_03.txt
Dactyloptena_orientalis_04.txt
Dactyloptena_orientalis_05.txt
Dactyloptena_papilio_01.txt
Dactyloptena_papilio_02.txt
Dactyloptena_peterseni_01.txt
Dactyloptena_peterseni_03.txt
Dactylopterus_volitans_01.txt
Dactylopterus_volitans_02.txt
Dactylopterus_volitans_03.txt
Dactylopterus_volitans_04.txt
Dactylopus_dactylopus_01.txt
Dactylopus_dactylopus_02.txt
Dactylopus_dactylopus_03.txt
Dactylopus_dactylopus_04.txt
Dactylopus_dactylopus_05.txt
Diplogrammus_goramensis_01.txt
Diplogrammus_goramensis_02.txt
Diplogrammus_goramensis_03.txt
Diplogrammus_pauciradiatus_01.txt
Diplogrammus_pauciradiatus_02.txt
Diplogrammus_pauciradiatus_03.txt
Diplogrammus_pauciradiatus_04.txt
Doryichthys_boaja_01.txt
Doryichthys_boaja_02.txt
Doryichthys_boaja_03.txt
Doryichthys_boaja_04.txt
Doryichthys_martensii_01.txt
Doryichthys_martensii_02.txt
Doryichthys_martensii_03.txt
Doryrhamphus_excisus_01.txt
Doryrhamphus_excisus_02.txt
Doryrhamphus_excisus_04.txt
Doryrhamphus_janssi_01.txt
Doryrhamphus_janssi_02.txt
Doryrhamphus_janssi_03.txt
Doryrhamphus_melanopleura_01.txt
Doryrhamphus_melanopleura_02.txt
Doryrhamphus_melanopleura_03.txt
Draconetta_xenica_01.txt
Draconetta_xenica_02.txt
Draculo_mirabilis_01.txt
Draculo_mirabilis_02.txt
Dunckerocampus_dactyliophorus_01.txt
Dunckerocampus_pessuliferus_01.txt
Enneacampus_ansorgii_01.txt
Entelurus_aequoreus_01.txt
Eurypegasus_draconis_01.txt
Eurypegasus_draconis_02.txt
Eurypegasus_draconis_03.txt
Eurypegasus_draconis_04.txt
Festucalex_wassi_01.txt
Filicampus_tigris_01.txt
Fistularia_commersonii_01.txt
Fistularia_commersonii_02.txt
Fistularia_corneta_01.txt
Fistularia_corneta_02.txt
Fistularia_corneta_03.txt
Fistularia_petimba_01.txt
Fistularia_petimba_02.txt
Fistularia_petimba_03.txt
Fistularia_tabacaria_01.txt
Fistularia_tabacaria_02.txt
Fistularia_tabacaria_03.txt
Fistularia_tabacaria_04.txt
Halicampus_crinitus_01.txt
Halicampus_dunckeri_01.txt
Halicampus_dunckeri_02.txt
Haliichthys_taeniophorus_01.txt
Hippichthys_penicillus_01.txt
Hippichthys_penicillus_02.txt
Hippichthys_penicillus_03.txt
Hypselognathus_rostratus_01.txt
Macroramphosus_gracilis_01.txt
Macroramphosus_gracilis_02.txt
Macroramphosus_gracilis_03.txt
Macroramphosus_gracilis_04.txt
Macroramphosus_scolopax_01.txt
Macroramphosus_scolopax_02.txt
Macroramphosus_scolopax_03.txt
Macroramphosus_scolopax_04.txt
Macroramphosus_scolopax_05.txt
Micrognathus_andersonii_01.txt
Micrognathus_andersonii_02.txt
Micrognathus_andersonii_03.txt
Microphis_brachyurus_01.txt
Microphis_brachyurus_02.txt
Microphis_brachyurus_03.txt
Microphis_brachyurus_04.txt
Microphis_lineatus_01.txt
Mulloidichthys_dentatus_01.txt
Mulloidichthys_dentatus_02.txt
Mulloidichthys_dentatus_03.txt
Mulloidichthys_dentatus_04.txt
Mulloidichthys_flavolineatus_01.txt
Mulloidichthys_flavolineatus_02.txt
Mulloidichthys_flavolineatus_03.txt
Mulloidichthys_flavolineatus_04.txt
Mulloidichthys_martinicus_01.txt
Mulloidichthys_martinicus_02.txt
Mulloidichthys_martinicus_03.txt
Mulloidichthys_martinicus_04.txt
Mulloidichthys_martinicus_05.txt
Mulloidichthys_vanicolensis_01.txt
Mulloidichthys_vanicolensis_02.txt
Mulloidichthys_vanicolensis_03.txt
Mulloidichthys_vanicolensis_04.txt
Mulloidichthys_vanicolensis_05.txt
Mullus_argentinae_01.txt
Mullus_argentinae_02.txt
Mullus_auratus_01.txt
Mullus_auratus_02.txt
Mullus_auratus_03.txt
Mullus_auratus_04.txt
Nerophis_ophidion_01.txt
Nerophis_ophidion_02.txt
Nerophis_ophidion_03.txt
Notopogon_fernandezianus_01.txt
Notopogon_fernandezianus_02.txt
Notopogon_fernandezianus_03.txt
Notopogon_lilliei_01.txt
Notopogon_lilliei_02.txt
Notopogon_lilliei_03.txt
Notopogon_xenosoma_01.txt
Notopogon_xenosoma_02.txt
Notopogon_xenosoma_03.txt
Parupeneus_barberinoides_01.txt
Parupeneus_barberinoides_02.txt
Parupeneus_barberinoides_03.txt
Parupeneus_barberinoides_04.txt
Parupeneus_barberinoides_05.txt
Parupeneus_barberinus_01.txt
Parupeneus_barberinus_02.txt
Parupeneus_barberinus_03.txt
Parupeneus_barberinus_04.txt
Parupeneus_barberinus_05.txt
Parupeneus_crassilabris_01.txt
Parupeneus_crassilabris_02.txt
Parupeneus_crassilabris_03.txt
Parupeneus_crassilabris_04.txt
Parupeneus_cyclostomus_01.txt
Parupeneus_cyclostomus_02.txt
Parupeneus_cyclostomus_03.txt
Parupeneus_cyclostomus_04.txt
Parupeneus_cyclostomus_05.txt
Parupeneus_forsskali_01.txt
Parupeneus_forsskali_02.txt
Parupeneus_forsskali_03.txt
Parupeneus_forsskali_04.txt
Parupeneus_forsskali_05.txt
Parupeneus_inayatae_01.txt
Parupeneus_indicus_01.txt
Parupeneus_indicus_02.txt
Parupeneus_indicus_03.txt
Parupeneus_indicus_04.txt
Parupeneus_indicus_05.txt
Parupeneus_insularis_01.txt
Parupeneus_insularis_02.txt
Parupeneus_insularis_03.txt
Parupeneus_insularis_04.txt
Parupeneus_insularis_05.txt
Parupeneus_jansenii_01.txt
Parupeneus_jansenii_02.txt
Parupeneus_jansenii_03.txt
Parupeneus_multifasciatus_01.txt
Parupeneus_multifasciatus_02.txt
Parupeneus_multifasciatus_03.txt
Parupeneus_multifasciatus_04.txt
Parupeneus_multifasciatus_05.txt
Parupeneus_pleurostigma_01.txt
Parupeneus_procerigena_01.txt
Parupeneus_procerigena_02.txt
Parupeneus_rubescens_01.txt
Parupeneus_rubescens_02.txt
Parupeneus_rubescens_03.txt
Parupeneus_rubescens_04.txt
Parupeneus_rubescens_05.txt
Parupeneus_trifasciatus_01.txt
Parupeneus_trifasciatus_02.txt
Parupeneus_trifasciatus_03.txt
Pegasus_tetrabelos_01.txt
Pegasus_volitans_01.txt
Pegasus_volitans_02.txt
Pegasus_volitans_03.txt
Pegasus_volitans_04.txt
Pegasus_volitans_05.txt
Pseudophallus_starksii_01.txt
Pseudophallus_starksii_02.txt
Pseudophallus_starksii_03.txt
Pseudupeneus_grandisquamis_01.txt
Pseudupeneus_grandisquamis_02.txt
Pseudupeneus_grandisquamis_03.txt
Pseudupeneus_grandisquamis_04.txt
Pseudupeneus_grandisquamis_05.txt
Pseudupeneus_maculatus_01.txt
Pseudupeneus_maculatus_02.txt
Pseudupeneus_maculatus_03.txt
Pseudupeneus_maculatus_04.txt
Pseudupeneus_maculatus_05.txt
Pseudupeneus_prayensis_01.txt
Pseudupeneus_prayensis_02.txt
Pseudupeneus_prayensis_03.txt
Pseudupeneus_prayensis_04.txt
Pseudupeneus_prayensis_05.txt
Siokunichthys_nigrolineatus_01.txt
Siokunichthys_nigrolineatus_02.txt
Solegnathus_guentheri_01.txt
Solegnathus_hardwickii_01.txt
Solegnathus_hardwickii_02.txt
Solegnathus_robustus_01.txt
Solegnathus_spinosissimus_01.txt
Solegnathus_spinosissimus_02.txt
Solenostomus_cyanopterus_01.txt
Solenostomus_cyanopterus_02.txt
Solenostomus_paradoxus_01.txt
Solenostomus_paradoxus_02.txt
Solenostomus_paradoxus_03.txt
Synchiropus_agassizii_01.txt
Synchiropus_agassizii_02.txt
Synchiropus_agassizii_03.txt
Synchiropus_agassizii_04.txt
Synchiropus_agassizii_05.txt
Synchiropus_altivelis_01.txt
Synchiropus_altivelis_02.txt
Synchiropus_altivelis_03.txt
Synchiropus_altivelis_04.txt
Synchiropus_altivelis_05.txt
Synchiropus_apricus_01.txt
Synchiropus_atrilabiatus_01.txt
Synchiropus_atrilabiatus_02.txt
Synchiropus_atrilabiatus_03.txt
Synchiropus_atrilabiatus_04.txt
Synchiropus_atrilabiatus_05.txt
Synchiropus_calauropomus_01.txt
Synchiropus_goodenbeani_01.txt
Synchiropus_goodenbeani_02.txt
Synchiropus_goodenbeani_03.txt
Synchiropus_goodenbeani_04.txt
Synchiropus_goodenbeani_05.txt
Synchiropus_masudai_01.txt
Synchiropus_morrisoni_01.txt
Synchiropus_morrisoni_02.txt
Synchiropus_morrisoni_03.txt
Synchiropus_morrisoni_04.txt
Synchiropus_morrisoni_05.txt
Synchiropus_moyeri_01.txt
Synchiropus_moyeri_02.txt
Synchiropus_moyeri_03.txt
Synchiropus_ocellatus_01.txt
Synchiropus_ocellatus_02.txt
Synchiropus_ocellatus_03.txt
Synchiropus_ocellatus_04.txt
Synchiropus_ocellatus_05.txt
Synchiropus_phaeton_01.txt
Synchiropus_phaeton_02.txt
Synchiropus_phaeton_03.txt
Synchiropus_phaeton_04.txt
Synchiropus_picturatus_01.txt
Synchiropus_picturatus_02.txt
Synchiropus_rameus_01.txt
Synchiropus_rameus_02.txt
Synchiropus_rameus_03.txt
Synchiropus_sp_01.txt
Synchiropus_splendidus_01.txt
Synchiropus_splendidus_02.txt
Synchiropus_splendidus_03.txt
Synchiropus_splendidus_04.txt
Synchiropus_splendidus_05.txt
Synchiropus_stellatus_01.txt
Synchiropus_stellatus_02.txt
Synchiropus_stellatus_03.txt
Synchiropus_stellatus_04.txt
Syngnathoides_biaculeatus_02.txt
Syngnathoides_biaculeatus_03.txt
Syngnathoides_biaculeatus_04.txt
Syngnathus_abaster_01.txt
Syngnathus_abaster_02.txt
Syngnathus_abaster_03.txt
Syngnathus_acus_01.txt
Syngnathus_acus_02.txt
Syngnathus_auliscus_01.txt
Syngnathus_auliscus_02.txt
Syngnathus_auliscus_03.txt
Syngnathus_californiensis_01.txt
Syngnathus_californiensis_02.txt
Syngnathus_californiensis_03.txt
Syngnathus_californiensis_04.txt
Syngnathus_exilis_01.txt
Syngnathus_floridae_01.txt
Syngnathus_floridae_02.txt
Syngnathus_floridae_03.txt
Syngnathus_fuscus_02.txt
Syngnathus_fuscus_03.txt
Syngnathus_leptorhynchus_01.txt
Syngnathus_leptorhynchus_02.txt
Syngnathus_leptorhynchus_03.txt
Syngnathus_louisianae_01.txt
Syngnathus_louisianae_02.txt
Syngnathus_pelagicus_01.txt
Syngnathus_pelagicus_02.txt
Syngnathus_pelagicus_03.txt
Syngnathus_pelagicus_04.txt
Syngnathus_rostellatus_01.txt
Syngnathus_rostellatus_02.txt
Syngnathus_rostellatus_03.txt
Syngnathus_scovelli_01.txt
Syngnathus_scovelli_02.txt
Syngnathus_scovelli_03.txt
Syngnathus_springeri_01.txt
Syngnathus_springeri_02.txt
Syngnathus_taenionotus_01.txt
Syngnathus_typhle_01.txt
Trachyrhamphus_bicoarctatus_01.txt
Trachyrhamphus_bicoarctatus_02.txt
Upeneichthys_lineatus_01.txt
Upeneichthys_lineatus_02.txt
Upeneichthys_lineatus_03.txt
Upeneichthys_stotti_01.txt
Upeneichthys_vlamingii_01.txt
Upeneus_asymmetricus_01.txt
Upeneus_asymmetricus_02.txt
Upeneus_australiae_01.txt
Upeneus_australiae_02.txt
Upeneus_filifer_01.txt
Upeneus_guttatus_01.txt
Upeneus_guttatus_02.txt
Upeneus_guttatus_03.txt
Upeneus_guttatus_04.txt
Upeneus_guttatus_05.txt
Upeneus_japonicus_01.txt
Upeneus_japonicus_02.txt
Upeneus_japonicus_03.txt
Upeneus_japonicus_04.txt
Upeneus_moluccensis_01.txt
Upeneus_moluccensis_02.txt
Upeneus_moluccensis_03.txt
Upeneus_nigromarginatus_01.txt
Upeneus_quadrilineatus_01.txt
Upeneus_quadrilineatus_02.txt
Upeneus_quadrilineatus_03.txt
Upeneus_sulphureus_01.txt
Upeneus_sundaicus_01.txt
Upeneus_torres_01.txt
Upeneus_tragula_01.txt
Vanacampus_phillipi_01.txt
Vanacampus_phillipi_02.txt
Vanacampus_phillipi_04.txt
Vanacampus_poecilolaemus_01.txt
Code/software
Software:
ASTRAL-III v5.6.3
bamm v2.5.0
MACSE v2.03
MCMCTree (PAML v4.9)
RAxML v8.2.4
RelTime
treePL
R packages:
ade4
alphahull
ape
BAMMtools
BioGeoBEARS
circlize
cladoRcpp
coda
congruification
data.table
DensiTree
devtools
dispRity
FD
geiger
geomorph
ggplot2
ggpubr
grid
gridExtra
hisse
hrbrthemes
hypervolume
lattice
mvMORPH
optimx
parallel
phangorn
PhylogeneticEM
phytools
PMCMRplus
qpcR
RColorBrewer
reshape2
rexpokit
roxygen2
snow
StereoMorph
tidyverse
treeio
viridis
wesanderson