Freshwater connectivity transforms spatially integrated signals of biodiversity
Data files
Sep 19, 2023 version files 39.35 GB
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12Sall_lengthfilter_zotus_8.fasta
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ASV_pipeline.sh
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COIallzotus_8_2.fasta
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MI.M00833_0667.001.N701---N502.663-5S_R1.fastq.gz
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MI.M00833_0667.001.N701---N502.663-5S_R2.fastq.gz
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MI.M00833_0667.001.N701---N503.663-SH1_R1.fastq.gz
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MI.M00833_0667.001.N701---N503.663-SH1_R2.fastq.gz
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MI.M00833_0667.001.N701---N504.664-2S_R1.fastq.gz
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MI.M00833_0667.001.N701---N504.664-2S_R2.fastq.gz
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MI.M00833_0667.001.N701---N505.664-IN2-1_R1.fastq.gz
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MI.M00833_0667.001.N701---N505.664-IN2-1_R2.fastq.gz
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MI.M00833_0667.001.N701---N506.240-3M_R1.fastq.gz
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MI.M00833_0667.001.N701---N506.240-3M_R2.fastq.gz
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MI.M00833_0667.001.N701---N507.303-5M_R1.fastq.gz
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MI.M00833_0667.001.N701---N507.303-5M_R2.fastq.gz
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MI.M00833_0667.001.N701---N508.303-SH2_R1.fastq.gz
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MI.M00833_0667.001.N701---N508.303-SH2_R2.fastq.gz
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MI.M00833_0667.001.N702---N502.663-5M_R1.fastq.gz
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MI.M00833_0667.001.N702---N502.663-5M_R2.fastq.gz
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MI.M00833_0667.001.N702---N503.663-SH2_R1.fastq.gz
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MI.M00833_0667.001.N702---N503.663-SH2_R2.fastq.gz
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MI.M00833_0667.001.N702---N504.664-2M_R1.fastq.gz
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MI.M00833_0667.001.N702---N504.664-2M_R2.fastq.gz
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MI.M00833_0667.001.N702---N505.664-IN2-2_R1.fastq.gz
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MI.M00833_0667.001.N702---N505.664-IN2-2_R2.fastq.gz
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MI.M00833_0667.001.N702---N506.240-3H_R1.fastq.gz
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MI.M00833_0667.001.N702---N506.240-3H_R2.fastq.gz
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MI.M00833_0667.001.N702---N507.303-1S_R1.fastq.gz
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MI.M00833_0667.001.N702---N507.303-1S_R2.fastq.gz
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MI.M00833_0667.001.N702---N508.303-OT1_R1.fastq.gz
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MI.M00833_0667.001.N702---N508.303-OT1_R2.fastq.gz
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MI.M00833_0667.001.N703---N502.663-1S_R1.fastq.gz
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MI.M00833_0667.001.N703---N502.663-1S_R2.fastq.gz
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MI.M00833_0667.001.N703---N503.663-IN1-1_R1.fastq.gz
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MI.M00833_0667.001.N703---N503.663-IN1-1_R2.fastq.gz
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MI.M00833_0667.001.N703---N504.664-3S_R1.fastq.gz
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MI.M00833_0667.001.N703---N504.664-3S_R2.fastq.gz
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MI.M00833_0667.001.N703---N505.664-OT1_R1.fastq.gz
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MI.M00833_0667.001.N703---N505.664-OT1_R2.fastq.gz
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MI.M00833_0667.001.N703---N506.240-4S_R1.fastq.gz
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MI.M00833_0667.001.N703---N506.240-4S_R2.fastq.gz
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MI.M00833_0667.001.N703---N507.303-1M_R1.fastq.gz
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MI.M00833_0667.001.N703---N507.303-1M_R2.fastq.gz
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MI.M00833_0667.001.N703---N508.303-OT2_R1.fastq.gz
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MI.M00833_0667.001.N703---N508.303-OT2_R2.fastq.gz
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MI.M00833_0667.001.N704---N502.663-1M_R1.fastq.gz
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MI.M00833_0667.001.N704---N502.663-1M_R2.fastq.gz
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MI.M00833_0667.001.N704---N503.663-IN1-2_R1.fastq.gz
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MI.M00833_0667.001.N704---N503.663-IN1-2_R2.fastq.gz
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MI.M00833_0667.001.N704---N504.664-3M_R1.fastq.gz
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MI.M00833_0667.001.N704---N504.664-3M_R2.fastq.gz
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MI.M00833_0667.001.N704---N505.664-OT2_R1.fastq.gz
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MI.M00833_0667.001.N704---N505.664-OT2_R2.fastq.gz
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MI.M00833_0667.001.N704---N506.240-4M_R1.fastq.gz
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MI.M00833_0667.001.N704---N506.240-4M_R2.fastq.gz
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MI.M00833_0667.001.N704---N507.303-2S_R1.fastq.gz
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MI.M00833_0667.001.N704---N507.303-2S_R2.fastq.gz
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MI.M00833_0667.001.N704---N508.303-STREAM1_R1.fastq.gz
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MI.M00833_0667.001.N704---N508.303-STREAM1_R2.fastq.gz
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MI.M00833_0667.001.N705---N502.663-2S_R1.fastq.gz
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MI.M00833_0667.001.N705---N502.663-2S_R2.fastq.gz
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MI.M00833_0667.001.N705---N503.663-IN2-1_R1.fastq.gz
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MI.M00833_0667.001.N705---N503.663-IN2-1_R2.fastq.gz
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MI.M00833_0667.001.N705---N504.664-3H_R1.fastq.gz
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MI.M00833_0667.001.N705---N504.664-3H_R2.fastq.gz
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MI.M00833_0667.001.N705---N505.664-CAVE1_R1.fastq.gz
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MI.M00833_0667.001.N705---N505.664-CAVE1_R2.fastq.gz
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MI.M00833_0667.001.N705---N506.240-4H_R1.fastq.gz
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MI.M00833_0667.001.N705---N506.240-4H_R2.fastq.gz
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MI.M00833_0667.001.N705---N507.303-2M_R1.fastq.gz
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MI.M00833_0667.001.N705---N507.303-2M_R2.fastq.gz
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MI.M00833_0667.001.N705---N508.303-STREAM2_R1.fastq.gz
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MI.M00833_0667.001.N705---N508.303-STREAM2_R2.fastq.gz
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MI.M00833_0667.001.N706---N502.663-2M_R1.fastq.gz
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MI.M00833_0667.001.N706---N502.663-2M_R2.fastq.gz
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MI.M00833_0667.001.N706---N503.663-IN2-2_R1.fastq.gz
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MI.M00833_0667.001.N706---N503.663-IN2-2_R2.fastq.gz
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MI.M00833_0667.001.N706---N504.664-4S_R1.fastq.gz
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MI.M00833_0667.001.N706---N504.664-4S_R2.fastq.gz
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MI.M00833_0667.001.N706---N505.240-5S_R1.fastq.gz
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MI.M00833_0667.001.N706---N505.240-5S_R2.fastq.gz
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MI.M00833_0667.001.N706---N506.240-SH1_R1.fastq.gz
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MI.M00833_0667.001.N706---N506.240-SH1_R2.fastq.gz
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MI.M00833_0667.001.N706---N507.303-3S_R1.fastq.gz
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MI.M00833_0667.001.N706---N507.303-3S_R2.fastq.gz
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MI.M00833_0667.001.N706---N508.304-5S_R1.fastq.gz
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MI.M00833_0667.001.N706---N508.304-5S_R2.fastq.gz
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MI.M00833_0667.001.N707---N502.663-3S_R1.fastq.gz
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MI.M00833_0667.001.N707---N502.663-3S_R2.fastq.gz
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MI.M00833_0667.001.N707---N503.663-OT1_R1.fastq.gz
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MI.M00833_0667.001.N707---N503.663-OT1_R2.fastq.gz
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MI.M00833_0667.001.N707---N504.664-4M_R1.fastq.gz
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MI.M00833_0667.001.N707---N504.664-4M_R2.fastq.gz
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MI.M00833_0667.001.N707---N505.240-5M_R1.fastq.gz
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MI.M00833_0667.001.N707---N505.240-5M_R2.fastq.gz
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MI.M00833_0667.001.N707---N506.240-SH2_R1.fastq.gz
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MI.M00833_0667.001.N707---N506.240-SH2_R2.fastq.gz
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MI.M00833_0667.001.N707---N507.303-3M_R1.fastq.gz
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MI.M00833_0667.001.N707---N507.303-3M_R2.fastq.gz
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MI.M00833_0667.001.N707---N508.303-5M_R1.fastq.gz
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MI.M00833_0667.001.N707---N508.303-5M_R2.fastq.gz
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MI.M00833_0667.001.N708---N502.663-3M_R1.fastq.gz
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MI.M00833_0667.001.N708---N502.663-3M_R2.fastq.gz
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MI.M00833_0667.001.N708---N503.663-OT2_R1.fastq.gz
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MI.M00833_0667.001.N708---N503.663-OT2_R2.fastq.gz
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MI.M00833_0667.001.N708---N504.664-4H_R1.fastq.gz
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MI.M00833_0667.001.N708---N504.664-4H_R2.fastq.gz
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MI.M00833_0667.001.N708---N505.240-1S_R1.fastq.gz
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MI.M00833_0667.001.N708---N505.240-1S_R2.fastq.gz
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MI.M00833_0667.001.N708---N506.240-OT1_R1.fastq.gz
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MI.M00833_0667.001.N708---N506.240-OT1_R2.fastq.gz
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MI.M00833_0667.001.N708---N507.303-3H_R1.fastq.gz
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MI.M00833_0667.001.N708---N507.303-3H_R2.fastq.gz
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MI.M00833_0667.001.N708---N508.304-1S_R1.fastq.gz
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MI.M00833_0667.001.N708---N508.304-1S_R2.fastq.gz
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MI.M00833_0667.001.N709---N502.663-3H_R1.fastq.gz
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MI.M00833_0667.001.N709---N502.663-3H_R2.fastq.gz
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MI.M00833_0667.001.N709---N503.664-5S_R1.fastq.gz
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MI.M00833_0667.001.N709---N503.664-5S_R2.fastq.gz
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MI.M00833_0667.001.N709---N504.664-SH1_R1.fastq.gz
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MI.M00833_0667.001.N709---N504.664-SH1_R2.fastq.gz
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MI.M00833_0667.001.N709---N505.240-1M_R1.fastq.gz
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MI.M00833_0667.001.N709---N505.240-1M_R2.fastq.gz
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MI.M00833_0667.001.N709---N506.240-OT2_R1.fastq.gz
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MI.M00833_0667.001.N709---N506.240-OT2_R2.fastq.gz
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MI.M00833_0667.001.N709---N507.303-4S_R1.fastq.gz
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MI.M00833_0667.001.N709---N507.303-4S_R2.fastq.gz
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MI.M00833_0667.001.N709---N508.304-1M_R1.fastq.gz
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MI.M00833_0667.001.N709---N508.304-1M_R2.fastq.gz
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MI.M00833_0667.001.N710---N502.663-4S_R1.fastq.gz
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MI.M00833_0667.001.N710---N502.663-4S_R2.fastq.gz
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MI.M00833_0667.001.N710---N503.664-5M_R1.fastq.gz
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MI.M00833_0667.001.N710---N503.664-5M_R2.fastq.gz
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MI.M00833_0667.001.N710---N504.664-SH2_R1.fastq.gz
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MI.M00833_0667.001.N710---N504.664-SH2_R2.fastq.gz
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MI.M00833_0667.001.N710---N505.240-2S_R1.fastq.gz
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MI.M00833_0667.001.N710---N505.240-2S_R2.fastq.gz
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MI.M00833_0667.001.N710---N506.240470-1_R1.fastq.gz
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MI.M00833_0667.001.N710---N506.240470-1_R2.fastq.gz
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MI.M00833_0667.001.N710---N507.303-4M_R1.fastq.gz
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MI.M00833_0667.001.N710---N507.303-4M_R2.fastq.gz
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MI.M00833_0667.001.N710---N508.304-2S_R1.fastq.gz
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MI.M00833_0667.001.N710---N508.304-2S_R2.fastq.gz
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MI.M00833_0667.001.N711---N502.663-4M_R1.fastq.gz
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MI.M00833_0667.001.N711---N502.663-4M_R2.fastq.gz
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MI.M00833_0667.001.N711---N503.664-1S_R1.fastq.gz
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MI.M00833_0667.001.N711---N503.664-1S_R2.fastq.gz
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MI.M00833_0667.001.N711---N504.664-IN1-1_R1.fastq.gz
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MI.M00833_0667.001.N711---N504.664-IN1-1_R2.fastq.gz
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MI.M00833_0667.001.N711---N505.240-2M_R1.fastq.gz
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MI.M00833_0667.001.N711---N505.240-2M_R2.fastq.gz
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MI.M00833_0667.001.N711---N506.240470-2_R1.fastq.gz
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MI.M00833_0667.001.N711---N506.240470-2_R2.fastq.gz
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MI.M00833_0667.001.N711---N507.303-4H_R1.fastq.gz
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MI.M00833_0667.001.N711---N507.303-4H_R2.fastq.gz
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MI.M00833_0667.001.N711---N508.304-2M_R1.fastq.gz
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MI.M00833_0667.001.N711---N508.304-2M_R2.fastq.gz
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MI.M00833_0667.001.N712---N502.663-4H_R1.fastq.gz
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MI.M00833_0667.001.N712---N502.663-4H_R2.fastq.gz
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MI.M00833_0667.001.N712---N503.664-1M_R1.fastq.gz
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MI.M00833_0667.001.N712---N503.664-1M_R2.fastq.gz
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MI.M00833_0667.001.N712---N504.664-IN1-2_R1.fastq.gz
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MI.M00833_0667.001.N712---N504.664-IN1-2_R2.fastq.gz
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MI.M00833_0667.001.N712---N505.240-3S_R1.fastq.gz
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MI.M00833_0667.001.N712---N505.240-3S_R2.fastq.gz
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MI.M00833_0667.001.N712---N506.303-5S_R1.fastq.gz
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MI.M00833_0667.001.N712---N506.303-5S_R2.fastq.gz
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MI.M00833_0667.001.N712---N507.303-SH1_R1.fastq.gz
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MI.M00833_0667.001.N712---N507.303-SH1_R2.fastq.gz
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MI.M00833_0667.001.N712---N508.304-3S_R1.fastq.gz
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MI.M00833_0667.001.N712---N508.304-3S_R2.fastq.gz
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MI.M00833_0669.001.N701---N502.165-1M_R1.fastq.gz
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MI.M00833_0669.001.N701---N503.165-IN1-2_R1.fastq.gz
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MI.M00833_0669.001.N701---N503.165-IN1-2_R2.fastq.gz
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MI.M00833_0669.001.N701---N504.164-3M_R1.fastq.gz
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MI.M00833_0669.001.N701---N507.628-3M_R1.fastq.gz
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MI.M00833_0669.001.N701---N508.626-5M_R1.fastq.gz
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MI.M00833_0669.001.N701---N508.626-5M_R2.fastq.gz
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MI.M00833_0669.001.N701---N517.626-SH2_R1.fastq.gz
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MI.M00833_0669.001.N701---N517.626-SH2_R2.fastq.gz
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MI.M00833_0669.001.N702---N502.165-2S_R1.fastq.gz
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MI.M00833_0669.001.N702---N503.165-IN2-1_R1.fastq.gz
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MI.M00833_0669.001.N702---N504.164-3H_R1.fastq.gz
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MI.M00833_0669.001.N702---N507.626-3H_R1.fastq.gz
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README.md
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README.txt
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Statistical_analysis.zip
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vs12S_lengthfilter_zotus_ELA.hits
Abstract
Aquatic ecosystems offer a continuum of water flow from headwater streams to inland lakes and coastal marine systems. This spatial connectivity influences the structure, function and dynamics of aquatic communities, which are among the most threatened and degraded on earth. Here, we determine the spatial resolution of eDNA in dendritic freshwater networks, which we use as a model for connected metacommunities. Our intensive sampling campaign comprised over 430 eDNA samples across 21 connected lakes, allowing us to analyse detections at a variety of scales, from different habitats within a lake to entire lake networks. We found strong signals of within-lake variation in eDNA distribution reflective of typical habitat use by both fish and zooplankton. Most importantly, we also found that connecting channels between lakes resulted in an accumulation of downstream eDNA detections in lakes with a higher number of inflows, and as networks increased in length. Environmental DNA achieves biodiversity surveys in these habitats in a high-throughput, spatially integrated way. These findings have profound implications for the interpretation of eDNA detections in aquatic ecosystems in global-scale biodiversity monitoring observations.
README
23/08/2022 Dr Joanne Littlefair, Queen Mary University of London
Further edits to describe statistical analysis on 12/09/2023
This README file relates to the manuscript "Freshwater connectivity transforms spatially integrated signals of biodiversity"
by. Joanne E. Littlefair, José S. Hleap, Vince Palace, Michael D. Rennie, Michael J. Paterson, Melania E. Cristescu
See README.txt file.
Usage notes
Raw sequence files are .gz format; can be opened with WinZip or similar.
R and R studio for opening statistical analysis scripts