Temperature influences the outcomes of an environmentally-acquired symbiosis
Data files
Oct 17, 2024 version files 329.85 KB
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README.md
6.45 KB
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Stillson2023_Adult_weight_data.csv
24.27 KB
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Stillson2023_Development_time_data.csv
226.44 KB
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Stillson2023_Host_titer_data.csv
35.30 KB
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Stillson2023_Mortality_data.csv
10.66 KB
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Stillson2023_Strain_growth_curves_data.csv
20.26 KB
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Stillson2023_Strain_phylogeny_meta_data.csv
2.80 KB
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Stillson2023_Strain_phylogeny.newick
3.67 KB
Abstract
Pentatomomorphan bugs can form symbiotic associations with bacteria belonging to the supergenus Burkholderia sensu lato. This relationship has become a model for understanding environmental symbiont acquisition. Host insects can utilize various symbiont strains from across Burkholderia sensu lato, however, host colonization success and benefits conferred vary by bacterial clade. Therefore, we conducted a meta-analysis aimed at identifying candidate genes that underpin beneficial symbioses within this system. We scanned the entire Burkholderiaceae family for the presence of 17 colonization-associated genes, as well as 88 candidate genes that are differentially expressed during symbiosis. There was no difference in the distribution of the 17 colonization-associated genes between symbiotic (Caballeronia and iPBE) and non-symbiotic lineages; however, there was a higher prevalence of the 88 candidate genes in the insect symbiont lineages. We subsequently analyzed the genomes of nine symbiotic Caballeronia strains that confer varying fitness benefits to their insect hosts. One symbiont strain was significantly worse, one was significantly better, and the remaining seven were intermediate in terms of conferred host fitness benefits. We found that strains possessing a higher number of the candidate genes conferred faster host development time. Furthermore, we identified two candidate genes that were missing in the least beneficial strain but present in the other eight, suggesting that these genes may be important in modulating symbiont quality. Our study suggests that the mechanisms required for host colonization are broadly distributed across Burkholderiaceae, but the genes that determine symbiont quality are more prevalent in insect-associated species. This work helps to identify genes that influence this highly specialized yet diverse symbiosis between Pentatomomorphan insects and Burkholderiaceae bacteria.
README: Temperature influences the outcomes of an environmentally-acquired symbiosis
https://doi.org/10.5061/dryad.zs7h44jjj
Description of the data and file structure
This README file describes the data packages and code accompanying the above publication.
Files and variables
File: Stillson2023_Adult_weight_data.csv
Description: Fresh weights at adulthood of L. phyllopus subjected to six temperature treatments and colonized by one of six different Caballeronia isolates. Every row represents one insect.
Variables
- BoxID: The cage in which an insect was reared.
- BugID: Unique identification letter for each insect in a box. Letter was provided upon collection at adulthood.
- Date: The date the insect was collected from its rearing cage.
- Strains: Identity of the isolate a host was infected with.
- Temp: The temperature in Celsius at which the insects were reared.
- weight: Fresh weight in mg upon eclosion to adulthood.
- sex: male (M) or female (F)
- notes: Any notes about the individual. NA if there were no notes.
File: Stillson2023_Strain_growth_curves_data.csv
Description: Bacterial thermal growth curves subjected to six temperature treatments. Every row represents the maximum growth slope for one replicate per strain.
Variables
- sid: Identity of the Caballeronia isolate.
- rep: replicate number for the specified strain.
- temp: The temperature in Celsius at which the strain was grown.
- well: The plate well the culture was grown in.
- slope: Maximum growth slope.
- slope_lwr: Lower limit of the growth slope.
- slope_upr: Upper limit of the growth slope.
- intercept: Intercept of the growth curve region.
- rsq: R-squared value of the growth curve region.
- ln_od: Natural log of the optical density of the maximum growth curve region.
File: Stillson2023_Host_titer_data.csv
Description: Symbiont titers of L. phyllopus subjected to six temperature treatments and colonized by one of six different Caballeronia isolates. Every row represents one insect.
Variables
- Box ID: The cage in which an insect was reared.
- Bug ID: Unique identification letter for each insect in a box. Letter was provided upon collection.
- Date: The date the insect was collected from its rearing cage.
- Age: The developmental staged of the host. 3 = third, 4 = fourth, 5 = fifth, Adult = Adult.
- Strain: Identity of the isolate a host was infected with.
- Temp: The temperature in Celsius at which the insects were reared.
- titerCT1: Cycle threshold for first sample well.
- titerCT2: Cycle threshold for second sample well.
- meanCT: Mean cycle threshold for sample wells.
- Intercept: Intercept generated from the standard curve.
- Slope: Slope generated from the standard curve.
- copy number: Calculated as 10^((meanCT – intercept)/slope)
File: Stillson2023_Strain_phylogeny_meta_data.csv
Description: Metadata for the tips of the Caballeronia 16S phylogeny in Figure S1. Isolates were Sanger-sequenced for this study.
Variables
- Name: Name of the strain listed in the corresponding Newick phylogeny file.
- new_name: The tip labels used on the phylogeny. These include the specific strain names and any named species used int eh phylogeny, followed by their strain names if applicable.
- num: Used to apply colors to the tip labels. 1 = strains not used in generating growth curves, 2 = strains used to generate growth curves only, 3 = strains used to generate growth curves and used in the rearing experiment
File: Stillson2023_Strain_phylogeny.newick
Description: Phylogeny used to generate Figure S1.
File: Stillson2023_Mortality_data.csv
Description: Host survival of L. phyllopus subjected to six temperature treatments and colonized by one of six different Caballeronia isolates. Every row represents survival for each cage.
Variables
- boxid: The cage in which an insect was reared.
- strain: Identity of the isolate a host was infected with.
- temp: The temperature in Celsius at which the insects were reared.
- live3: The number of live third instars.
- live4: The number of live fourth instars.
- live5: The number of live fifth instars.
- live6 : The number of live adults. Insects were collected and removed from the cages at this point.
- dead3: The number of dead third instars.
- dead4: The number of dead fourth instars.
- dead5: The number of dead fifth instars.
- totallive: Total number of insects alive in the cage. Includes adult insects that were removed during observations.
- totaldead: Total number of insects that died in the cage. Includes all insects that died over the course of all observations.
- totalbugs: Total number of insects in the cage. Includes adults and dead insects that were removed when found during daily observations.
- sac3: The number of sacrificed third instars.
- sac4: The number of sacrificed fourth instars.
- sac5: The number of sacrificed fifth instars.
- totalsac: Total number of sacrificed insects.
File: Stillson2023_Development_time_data.csv
Description: Development times of L. phyllopus subjected to six temperature treatments and colonized by one of six different Caballeronia isolates. Every row represents one daily data collection for each cage.
Variables
- boxid: The cage in which an insect was reared.
- date: The date of data collection
- strain: Identity of the isolate a host was infected with.
- temp: The temperature in Celsius at which the insects were reared.
- live3: The number of live third instars.
- live4: The number of live fourth instars.
- live5: The number of live fifth instars.
- live6 : The number of live adults. Insects were collected and removed from the cages at this point.
- dead3: The number of dead third instars.
- dead4: The number of dead fourth instars.
- dead5: The number of dead fifth instars.
- totallive: Total number of insects alive in the cage. Includes adult insects that were removed during observations.
- totaldead: Total number of insects that died in the cage. Includes all insects that died over the course of all observations.
- totalbugs: Total number of insects in the cage. Includes adults and dead insects that were removed when found during daily observations.
- Notes: Any notes about the cage. Start indicates initial observation for cage, retire indicates final observation, NA if there were no notes.