Blainville’s beaked whale (Mesoplodon densirostris) echolocation clicks from autonomous passive acoustic recordings
Data files
Dec 23, 2022 version files 11.41 GB
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BM_A_01_Md.mat
55.69 MB
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BM_A_02_Md.mat
17.98 MB
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BM_A_03_Md.mat
69.27 MB
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Equa_A_01_Md.mat
451.34 MB
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GOM_DT_10_Md.mat
650.98 KB
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GOM_GC_01_Md.mat
5.52 MB
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GOM_GC_03_Md.mat
1.54 MB
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GOM_GC_05_Md.mat
30.88 MB
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GOM_GC_06_Md.mat
5.69 MB
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GOM_GC_07_Md.mat
14.77 MB
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GOM_GC_08_Md.mat
11.98 MB
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GOM_GC_09_Md.mat
7.51 MB
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GOM_HH_04_Md.mat
146.76 KB
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GOM_MC_12_Md.mat
2.06 MB
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HAT_A_02_Md.mat
2.13 MB
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HAT_A_03_Md.mat
1.56 MB
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HAT_A_04_Md.mat
182.70 KB
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HAT_A_05_Md.mat
4.10 MB
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Hawaii_K_01_Md.mat
2.25 MB
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Hawaii_K_02_Md.mat
43.24 MB
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Hawaii_K_03_Md.mat
17.78 MB
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Hawaii_K_05_Md.mat
3.10 MB
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Hawaii_K_06_Md.mat
29.31 MB
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Hawaii_K_07_Md.mat
2.46 MB
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Hawaii_K_10_Md.mat
42.90 MB
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Hawaii_K_13_Md.mat
16.01 MB
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Hawaii_K_14_Md.mat
11.55 MB
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Hawaii_K_15_Md.mat
11.99 MB
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Hawaii_K_16_Md.mat
6.59 MB
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Hawaii_K_17_Md.mat
175.32 MB
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Hawaii_K_22_Md.mat
64.52 MB
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Hawaii_K_23_Md.mat
447.67 MB
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Hawaii_K_26_Md.mat
511.56 MB
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JAX_D_11_Md.mat
1.84 MB
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Kauai_A_01_Md.mat
12.02 MB
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Kauai_A_02_Md.mat
774.83 KB
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King_A_01_Md.mat
16.58 MB
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LSM_D_01_Md.mat
1.05 GB
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NFC_A_02_Md.mat
770.16 KB
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NFC_A_03_Md.mat
463.27 KB
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ONB_E_06_Md.mat
17.67 MB
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ONB_E_07_Md.mat
5.98 MB
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ONB_E_08_Md.mat
14.79 MB
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Pagan_A_01_Md.mat
143.31 MB
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PAL_NS_10_Md.mat
144.09 KB
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PHR_A_01_Md.mat
135.44 MB
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PHR_A_02_Md.mat
352.69 MB
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PHR_A_04_Md.mat
417.35 MB
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PHR_A_05_Md.mat
413.87 MB
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PHR_A_08_Md.mat
1.36 GB
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PHR_A_09_Md.mat
1.01 GB
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PHR_A_10_Md.mat
652.78 MB
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README.rtf
56.73 KB
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Saipan_A_01_Md.mat
9.76 MB
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Saipan_A_02_Md.mat
16.75 MB
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Saipan_A_03_Md.mat
71.86 MB
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Saipan_A_04_Md.mat
48.09 MB
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Saipan_A_05_Md.mat
105.51 MB
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Saipan_A_06_Md.mat
90.48 MB
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Saipan_A_07_Md.mat
116.36 MB
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SOCAL_Q_38_Md.mat
776.14 KB
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SOCAL_R_41_Md.mat
255.05 KB
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Tinian_A_02_Md.mat
92.74 MB
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Tinian_A_03_Md.mat
215.07 MB
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Tinian_A_04_Md.mat
438.70 MB
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Tinian_A_05_Md.mat
187.96 MB
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Tinian_A_06_Md.mat
271.52 MB
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Tinian_A_07_Md.mat
118.65 MB
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Wake_S_04_Md.mat
2.16 MB
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Wake_S_07_Md.mat
527.16 KB
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WAT_BS_01_Md.mat
1.95 GB
Abstract
Understanding the distribution of cetacean species and their populations over space and time is relevant to conservation, management, and mitigation goals. Geographic differences in acoustic signals may provide a line of evidence for population-level discrimination in some cetacean species. This data set of acoustic recordings collected over broad spatial and temporal scales was used to investigate whether global variability in echolocation click peak frequency could elucidate population structure in Blainville’s beaked whale (Mesoplodon densirostris). It consists of ~4.1M event detections from over 70 instrument deployments at 23 sites.
Methods
Passive acoustic data was collected with High-frequency Acoustic Recordig Packages (HARPs, Scripps Institution of Oceanography, University of California, San Diego, La Jolla, CA, USA), sampling at 200 kHz, 16 bit. They were analyzed to extract Blainville's beaked whale echolocation clicks.
Files are named according to the acoustic dataset from which they were derived with the following file name structure:<Project>_<Site>_<DeploymentNumber>_<SpeciesAbbreviation>.mat
These files contain impulsive event detections from 70 deployments of HARPs. Only detections with signal-to-noise levels >10 dB were retained. Each file includes false detections which are subsequently cleaned out through clustering as described in the associated manuscript.
Variables in all files include MTT, MPP, MSN, MSP; each row represents 1 event:
- MTT: Start time of event as ISO-8601 date (format YYYY-MM-DDThh:mm:ss.sssZ; e.g., 2013-06-16T13:05:55.577Z).
- MPP: Peak to peak amplitude of event in dB re 1µPa.
- MSN: Event waveforms, sampled at 200 kHz, padded with zeros as needed to reach 202 samples, with maximum energy located around the 100th sample.
- MSP: Spectra of each event, in 1 kHz frequency bins.
- f: Frequency vector in kHz associated with the spectra in MSP.
Usage notes
Data files are saved as –v7.3 in Matlab 2021a. This file type can be opened via NetCDF routines.
Matlab-based software used with the dataset and associated manuscript can be found at: https://github.com/MarineBioAcousticsRC/Triton, including plugins:
Click Detector:
https://github.com/MarineBioAcousticsRC/Triton/tree/master/Remoras/Detector
Cluster Tool:
https://github.com/MarineBioAcousticsRC/Triton/tree/master/Remoras/ClusterTool