Muntiacus muntjak and Muntiacus reevesi supporting files
Data files
May 15, 2019 version files 185.80 MB
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Mmuntjak.cds.fasta.gz
11.61 MB
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Mmuntjak.gff.gz
65.81 MB
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Mmuntjak.interproscan.gz
7.70 MB
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Mmuntjak.pep.fasta.gz
7.37 MB
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Mmuntjak.repeat_lib.fasta.gz
337.74 KB
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Mreevesi.cds.fasta.gz
11.77 MB
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Mreevesi.gff.gz
65.64 MB
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Mreevesi.interproscan.gz
7.79 MB
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Mreevesi.pep.fasta.gz
7.45 MB
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Mreevesi.repeat_lib.fasta.gz
332.18 KB
Dec 16, 2019 version files 48.13 MB
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Mmuntjak.cds.fasta.gz
11.59 MB
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Mmuntjak.gff.gz
4.64 MB
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Mmuntjak.pep.fasta.gz
7.36 MB
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Mmuntjak.repeat_lib.fasta.gz
337.74 KB
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Mreevesi.cds.fasta.gz
11.76 MB
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Mreevesi.gff.gz
4.66 MB
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Mreevesi.pep.fasta.gz
7.45 MB
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Mreevesi.repeat_lib.fasta.gz
332.18 KB
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Muntjac.timetree.nexus
1.45 KB
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Muntjac.tree.newick
213 B
Abstract
Available Files:
Mmuntjak.cds.fasta.gz - Nucleotide sequences of the coding regions from M. muntjak gene annotations.
Mmuntjak.gff.gz - Gene annotations for M. muntjak from Gene Model Mapper (v1.5.3).
Mmuntjak.pep.fasta.gz - Peptide sequences of the coding regions from M. muntjak gene annotations.
Mmuntjak.repeat_lib.fasta.gz - De novo repeats from RepeatModeler (v1.0.11) for M. muntjak as well as ancestral Cetartiodactyla repeats from RepBase (downloaded November 8, 2018).
Mreevesi.cds.fasta.gz - Nucleotide sequences of the coding regions from M. reevesi gene annotations.
Mreevesi.gff.gz - Gene annotations for M. reevesi from Gene Model Mapper (v1.5.3).
Mreevesi.pep.fasta.gz - Peptide sequences of the coding regions from M. reevesi gene annotations.
Mreevesi.repeat_lib.fasta.gz - De novo repeats from RepeatModeler (v1.0.11) for M. reevesi as well as ancestral Cetartiodactyla repeats from RepBase (downloaded November 8, 2018).
Muntjac.timetree.nexus - Nexus format phylogenetic tree derived from phylogenetic tree Muntjac.tree.newick. Divergence time confidence intervals from TimeTree were input into MEGA7 (v7.0.26), using the Reltime method and the GTR+Gamma model to create a time tree.
Muntjac.tree.newick - Newick format phylogenetic tree based on fourfold degenerate sites and constructed with RAxML (v8.2.11) using the GTR+Gamma model of substitution with outgroup B. taurus.