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Muntiacus muntjak and Muntiacus reevesi supporting files

Citation

Mudd, Austin et al. (2019), Muntiacus muntjak and Muntiacus reevesi supporting files, Dryad, Dataset, https://doi.org/10.6078/D1KT16

Abstract

Available Files:

Mmuntjak.cds.fasta.gz - Nucleotide sequences of the coding regions from M. muntjak gene annotations.

Mmuntjak.gff.gz - Gene annotations for M. muntjak from Gene Model Mapper (v1.5.3).

Mmuntjak.pep.fasta.gz - Peptide sequences of the coding regions from M. muntjak gene annotations.

Mmuntjak.repeat_lib.fasta.gz - De novo repeats from RepeatModeler (v1.0.11) for M. muntjak as well as ancestral Cetartiodactyla repeats from RepBase (downloaded November 8, 2018).

Mreevesi.cds.fasta.gz - Nucleotide sequences of the coding regions from M. reevesi gene annotations.

Mreevesi.gff.gz - Gene annotations for M. reevesi from Gene Model Mapper (v1.5.3).

Mreevesi.pep.fasta.gz - Peptide sequences of the coding regions from M. reevesi gene annotations.

Mreevesi.repeat_lib.fasta.gz - De novo repeats from RepeatModeler (v1.0.11) for M. reevesi as well as ancestral Cetartiodactyla repeats from RepBase (downloaded November 8, 2018).

Muntjac.timetree.nexus - Nexus format phylogenetic tree derived from phylogenetic tree Muntjac.tree.newick. Divergence time confidence intervals from TimeTree were input into MEGA7 (v7.0.26), using the Reltime method and the GTR+Gamma model to create a time tree.

Muntjac.tree.newick - Newick format phylogenetic tree based on fourfold degenerate sites and constructed with RAxML (v8.2.11) using the GTR+Gamma model of substitution with outgroup B. taurus.

Funding

National Institute of General Medical Sciences, Award: R01GM086321

Eunice Kennedy Shriver National Institute of Child Health and Human Development, Award: R01HD080708

National Cancer Institute, Award: R01CA196884