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Dryad

Data for: Prescribed versus wildfire impacts on exotic plants and soil microbes in California grasslands

Cite this dataset

Larios, Loralee et al. (2023). Data for: Prescribed versus wildfire impacts on exotic plants and soil microbes in California grasslands [Dataset]. Dryad. https://doi.org/10.6086/D1VQ36

Abstract

Prescribed burns are often used as a management tool to decrease exotic plant cover and increase native plant cover in grasslands. These changes may also be mediated by fire impacts on soil microbial communities, which drive plant productivity and function. Yet, the ecological effects of prescribed burns compared to wildfires on either plant or soil microbial composition remain unclear.

Grassland fires account for roughly 80% of global annual fires, but only roughly 12% of research on belowground impacts of fires occurs in grasslands, limiting our understanding of aboveground belowground connections in these important habitats.

Here, we took advantage of the serendipitous opportunity of a wildfire burning through the same reserve where we had previously sampled a prescribed burn. This enabled us to investigate the impacts of a spring prescribed burn versus a fall wildfire on plant cover and community composition and bacterial and fungal richness, abundance, and composition. Our California grassland sites were thus within the same reserve, limiting environmental, vegetation, or climate variation between the sites.

We used qPCR of 16S and 18S to assess impacts on bacterial and fungal abundance and Illumina MiSeq of 16S and ITS2 to assess impacts on bacterial and fungal richness and composition.

Wildfire had stronger impacts than prescribed burns on microbial communities and both fires had similar impacts on plants with both prescribed and wildfire reducing exotic plant cover but neither reducing exotic plant richness. Fungal richness declined after the wildfire but not prescribed burn, but bacterial richness was unaffected by either. Yet, fire exposure in both fire types resulted in reduced bacterial and fungal abundance and altered bacterial and fungal composition.

Plant diversity differentially impacted soil microbial diversity, with exotic plant diversity positively impacting bacterial richness and having no effect on arbuscular mycorrhizal richness. However, the remainder of the soil microbial communities were more related to aspects of soil chemistry including cation exchange capacity, organic matter, pH and phosphorous.

Our coupled plant and soil community sampling allowed us to capture the sensitivity to fire of the fungal community and highlights the importance of potentially incorporating management actions such as soil or fungal amendments to promote this critical community that mediates native plant performance.

Usage notes

APSoil_file column header metadata.txt

This is a central file that has column header descriptions for the Dryad data files.

APSoil_SpringPlantdata.csv

Plant species composition data for grassland plots in prescribed and wildfire study sites. It includes plots that were exposed to fire (i.e. burned) and those not (i.e. unburned). Data were collected in the first spring after the respective fire. Six letter species codes are used for column headers.  Full species names for species codes can be found in APSoil_Plant Species List.csv Columns for species diversity response variables are also included in that are stratified across the entire community or based on species provenance (i.e. native or exotic).

APSoil_Plant Species List.csv

Provides full species names for any plant species observed during the study. A "NA" value was given for any species that had no field observation notes.

APSoil_Bacterial-Metadata-withsoilPCA_final.csv

Bacterial richness, diversity and abundance response variables for grassland plots sampled in prescribed and wildfire study sites that were either exposed to fire or not. Data are reported for multiple time points and file includes soil chemistry data and soil PCA axis scores that were used for data analysis. Soil samples were only collected for first time point after fire; thus the soil variables for other timepoints are listed as NA. 

APSoil_otu_Bacteria_16S_rarefied data.csv

Bacterial OTU table after rarefication adjustments. The first column is a sample ID key that can be connected to plot treatment information found in APSoil_Bacterial-Metadata-withsoilPCA_final.csv

APSoil_Fungal-Metadata-withsoilPCA_final.csv

Fungal richness, diversity and abundance response variables for grassland plots sampled in prescribed and wildfire study sites that were either exposed to fire or not. Data are reported for multiple time points and file includes soil chemistry data and soil PCA axis scores that were used for data analysis. Soil samples were only collected for first time point after fire; thus the soil variables for other timepoints are listed as NA.

APSoil_otu_Fungal_ITS_rarefied data.csv

Fungal OTU table after rarefication adjustments. The first column is a sample ID key that can be connected to plot treatment information found in APSoil_Fungal-Metadata-withsoilPCA_final.csv

APSoil_AMF data.csv

Compiled data file that has summary spring plant richness and diversity metrics and richness, diversity metrics for arbuscular fungal mycorrhizae

Funding

United States Department of the Interior, Award: L19AC00280