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Simulation input and out and data analysis for calculating partition coefficients of small molecules in octanol/water and cyclohexane/water

Data files

Jun 28, 2016 version files 430.30 MB

Abstract

Below are summaries for each archived file. There are READMEs in each sub-directory detailing the contents.
RunFiles.tar These are a set of GROMACS molecular dynamics parameter files and an example run script
Data.tar.gz This directory contains all data produced by the project including input files created by Solvation Toolkit, output files from the GROMACS simulations, Alchemical Analysis, average density convergence plots, and dictionaries and text files with all calculated and experimental data.
pythonScripts.tar These are python scripts that were used for the project as a whole.
ErythromycinConformations.tar This directory contains all the python scripts and analysis related to repeated erythromycin calculations with different initial conformations.
Density_followup.tar This directory includes python scripts and data analysis for the example density convergence plots that are referenced in the text.