Propinquity output documentation. The top-level docs are here.
The labelled_supertree directory holds the final solution trees, generated by reattaching the parts of the taxonomy which were not covered by any input tree (from ../cleaned_ott/index.html) to the grafted solution (see ../grafted_solution/index.html).
Next step: Annotate the tree; see ../annotated_supertree/index.html
Results
The input grafted solution had 1607 leaves and 1560 forking nodes (and 0 monotypic nodes).
The input cleaned taxonomy had 38420 leaves and 4015 forking nodes (and 1925 monotypic nodes).
36813 leaves were added to create the solution. 127 taxa were rejected.
The files of interest in this directory are (for large files, the link will download the file):
Non-monophyletic taxa: There were 0 non-monophyletic taxa