Sample Status Data Type Quality One copy gain Two or more copy gain One copy loss Two copy loss Total CN aberrations LOH % LOH Discarded % % Genome Changed Sample type lymph node true BICR10 Processed Illumina 4.64e-02 314 1 92 15 422 104 2.20e+01 6.41e-03 2.41e+01 Immortal carcinoma 0 true BICR16 Processed Illumina 9.74e-02 233 8 617 29 887 118 4.85e+01 3.21e-03 4.28e+01 Immortal carcinoma 0 true BICR18 Processed Illumina 6.64e-02 446 52 761 12 1271 152 4.28e+01 5.88e-03 4.31e+01 Immortal carcinoma 1 true BICR22 Processed Illumina 4.66e-02 126 46 102 8 282 103 2.97e+01 2.14e-03 2.43e+01 Immortal carcinoma 1 true BICR3 Processed Illumina 4.02e-02 208 63 37 3 311 123 1.55e+01 3.03e-03 1.87e+01 Immortal carcinoma 0 true BICR31 Processed Illumina 4.62e-02 192 81 127 11 411 102 5.84e+01 3.03e-03 3.02e+01 Immortal carcinoma 1 true BICR56 Processed Illumina 4.17e-02 68 0 139 3 210 89 1.93e+01 3.74e-03 1.72e+01 Immortal carcinoma 1 true BICR6 Processed Illumina 5.08e-02 507 11 252 18 788 101 4.16e+01 4.10e-03 4.17e+01 Immortal carcinoma 1 true BICR63 Processed Illumina 5.77e-02 594 15 347 2 958 140 2.09e+01 5.70e-03 2.88e+01 Immortal carcinoma 1 true BICR68 Processed Illumina 8.83e-02 61 0 517 4 582 67 1.15e+01 4.27e-03 1.53e+01 Immortal carcinoma 0 true BICR78 Processed Illumina 6.80e-02 571 19 176 8 774 106 3.85e+01 3.38e-03 3.14e+01 Immortal carcinoma 1 true BICR82 Processed Illumina 4.14e-02 338 16 145 61 560 136 2.93e+01 7.30e-03 3.10e+01 Immortal carcinoma true Cal27_4900_S01_CGH-v4_10_Apr08 Processed Agilent FE 1.24e-01 319 17 111 86 533 0 0.00e+00 4.12e-02 3.00e+01 Astra head and neck carcinoma true Detroit562_4651_S01_CGH-v4_10_Apr08 Processed Agilent FE 6.07e-02 241 19 145 11 416 0 0.00e+00 4.46e-02 5.83e+01 Astra head and neck carcinoma true FaDu_2908_S01_CGH-v4_10_Apr08 Processed Agilent FE 5.50e-02 149 29 125 43 346 0 0.00e+00 4.04e-02 4.96e+01 Astra head and neck carcinoma true H314K Processed Illumina 1.51e-01 141 2 118 3 264 98 3.69e+01 5.88e-03 2.61e+01 Immortal carcinoma true H413K Processed Illumina 9.72e-02 238 50 48 5 341 133 2.83e+01 7.48e-03 3.20e+01 Immortal carcinoma 0 true HN5_4396_S01_CGH-v4_10_Apr08 Processed Agilent FE 4.21e-02 268 1 280 6 555 0 0.00e+00 8.45e-02 3.26e+01 Astra head and neck carcinoma 0 true KYSE30_4805_S01_CGH-v4_10_Apr08 Processed Agilent FE 4.77e-02 223 16 271 33 543 0 0.00e+00 7.65e-02 5.44e+01 Astra head and neck carcinoma true OE21_4961_S01_CGH-v4_10_Apr08 Processed Agilent FE 7.08e-02 238 11 131 20 400 0 0.00e+00 3.35e-01 5.64e+01 Astra head and neck carcinoma true PECa-PJ15_4962_S01_CGH-v4_10_Apr08 Processed Agilent FE 6.29e-02 341 15 269 19 644 0 0.00e+00 2.06e-01 5.08e+01 Astra head and neck carcinoma 1 true PECa-PJ49_2956_S01_CGH-v4_10_Apr08 Processed Agilent FE 3.61e-02 181 6 179 11 377 0 0.00e+00 8.55e-01 4.26e+01 Astra head and neck carcinoma true PECa_PJ34_4964_S01_CGH-v4_10_Apr08 Processed Agilent FE 8.10e-02 261 13 195 101 570 0 0.00e+00 1.03e-01 4.60e+01 Astra head and neck carcinoma true PECAPJ41_4784_S01_CGH-v4_10_Apr08 Processed Agilent FE 8.94e-02 152 23 231 72 478 0 0.00e+00 2.69e-02 3.38e+01 Astra head and neck carcinoma 1 true RPMI2650_4785_S01_CGH-v4_10_Apr08 Processed Agilent FE 3.67e-02 27 0 14 3 44 0 0.00e+00 6.01e-02 3.58e-01 Astra head and neck carcinoma true SW579_4899_S01_CGH-v4_10_Apr08 Processed Agilent FE 5.71e-02 305 16 303 10 634 0 0.00e+00 7.19e-02 5.18e+01 Astra head and neck carcinoma true T4 Processed Illumina 4.59e-02 24 7 63 4 98 102 1.98e+01 2.67e-03 1.93e+01 Immortal carcinoma 0 true T5 Processed Illumina 5.33e-02 307 1 61 5 374 136 1.57e+01 8.91e-03 3.37e+01 Immortal carcinoma 1 true D19 Processed Illumina 3.93e-02 209 9 495 19 732 117 1.37e+01 8.10e-02 3.01e+01 immortal dysplasia 3 true D20 Processed Illumina 4.41e-02 32 2 73 0 107 115 1.76e+01 6.77e-03 1.68e+01 immortal dysplasia 3 true D34 Processed Illumina 4.34e-02 112 60 11 2 185 117 1.17e+01 7.48e-03 8.11e+00 immortal dysplasia 3 true D35 Processed Illumina 5.13e-02 443 1 208 11 663 91 3.25e+01 8.91e-04 3.94e+01 immortal dysplasia 3 true D38 Processed Illumina 4.00e-02 170 0 50 2 222 112 5.79e+00 6.23e-03 1.34e+01 immortal dysplasia 3 true D4 Processed Illumina 4.88e-02 234 1 343 11 589 95 1.57e+01 1.60e-03 1.87e+01 immortal dysplasia 3 true D9 Processed Illumina 3.75e-02 215 0 327 0 542 113 1.97e+01 1.25e-03 1.09e+01 immortal dysplasia 3 true D17 Processed Illumina 3.63e-02 37 0 36 3 76 99 1.56e+01 5.88e-03 1.93e+01 Mortal dysplasia true D25 Processed Illumina 8.78e-02 44 2 381 0 427 95 8.49e+00 2.49e-03 6.70e+00 Mortal dysplasia true D30 Processed Illumina 5.54e-02 662 0 2049 1 2712 88 8.18e+00 1.60e-03 2.11e+01 Mortal dysplasia true D47 Processed Illumina 3.32e-02 101 0 5 1 107 108 4.20e+00 5.70e-03 3.81e+00 Mortal dysplasia true D48 Processed Illumina 3.57e-02 118 0 8 3 129 114 4.89e+00 4.63e-03 3.27e+00 Mortal dysplasia true D6 Processed Illumina 6.06e-02 16 0 37 1 54 95 8.87e+00 3.56e-03 4.73e+00 Mortal dysplasia true D8 Processed Illumina 4.12e-02 12 0 56 1 69 92 8.66e+00 4.81e-03 4.01e+00 Mortal dysplasia true E1 Processed Illumina 1.91e-01 491 2 279 2 774 72 7.43e+00 3.83e-02 2.32e+01 Mortal dysplasia true E2 Processed Illumina 3.64e-02 5 0 25 0 30 105 9.25e+00 8.91e-03 4.77e+00 Mortal dysplasia true E4 Processed Illumina 4.16e-02 91 0 6 2 99 109 4.27e+00 3.74e-03 3.85e+00 Mortal dysplasia true E5 Processed Illumina 4.90e-02 1 0 14 0 15 99 8.85e+00 1.19e-02 4.85e+00 Mortal dysplasia true 18N Processed Illumina 1.56e-01 188 0 711 0 899 90 8.59e+00 4.63e-03 1.39e+01 Matching normal true 22N Processed Illumina 2.92e-02 6 0 82 0 88 95 8.78e+00 4.99e-03 4.15e+00 Matching normal true 31N Processed Illumina 1.28e-01 17 0 109 2 128 102 8.79e+00 1.78e-03 4.47e+00 Matching normal true 3N Processed Illumina 4.49e-02 56 2 7 2 67 118 4.84e+00 8.55e-03 4.14e+00 Matching normal true 63N Processed Illumina 4.71e-02 4 0 69 1 74 97 9.78e+00 4.27e-03 4.17e+00 Matching normal true 68N Processed Illumina 5.83e-02 89 0 95 1 185 70 2.78e+00 4.27e-03 4.16e+00 Matching normal true 78N Processed Illumina 1.39e-01 37 0 495 1 533 91 8.29e+00 3.38e-03 9.03e+00 Matching normal true 82N Processed Illumina 7.43e-02 582 0 1073 0 1655 90 8.55e+00 3.21e-03 2.65e+01 Matching normal true BD19 Processed Illumina 9.39e-02 10 0 31 0 41 80 8.26e+00 5.34e-03 7.25e-01 Matching normal true E2F Processed Illumina 8.85e-02 27 0 60 0 87 98 8.98e+00 7.30e-03 2.52e+00 Matching normal true E5N Processed Illumina 4.36e-02 4 0 209 0 213 92 8.66e+00 1.25e-03 4.75e+00 Matching normal