#NEXUS begin taxa; dimensions ntax=39; taxlabels Brandisia_hancei Buchnera_americana Bungea_trifida Epifagus_virginiana Euphrasia_frigida Euphrasia_sinuata Melampyrum_sylvaticum Rhinanthus_alectorolophus Lathraea_squamaria Lindenbergia_philippensis Macrosyringion_longiflorum Nothobartsia_asperrima Parentucellia_latifolia Odontites_bolligeri Odontites_luteus Odontites_vernus Odontitilla_virgata Phelipanche_aegyptiaca Orobanche_flava Pedicularis_aspleniifolia Pedicularis_decora Pedicularis_densispica Pedicularis_elwesii Pedicularis_lachnoglossa Pedicularis_rostratospicata Pedicularis_verticillata Pterygiella_cylindrica Pterygiella_duclouxii Radamaea_montana Rehmannia_piasezkii Mimulus_guttatus Schwalbea_americana Striga_hermonthica Striga_bilabiata Striga_gesnerioides Triaenophora_shennongjiaensis Triphysaria_pusilla Triphysaria_versicolor Paulownia_fargesii ; end; begin characters; dimensions nchar=289; format datatype=dna missing=? gap=-; matrix Brandisia_hancei AATAGATGTGGCTCTTACCGGTTCGCAGAAAGCTCTTTCTCTTCCCACTGGAATGGGAATTGTGTGCGCAAGCCCTAAGGCTCTTGAAGCCACTAAGACTGCCAAATCAGTCCGAG---TTTTCTTCGACTGGAGCGATTACTTGAAGTTCTATAAATTGGGAACAATGTGGCCTTACACCCCTTCCATTCAGCTTCTGTATGGGCTAAGAGCAGCTTTGGATCTTATTTTCGAGGAAGGGCTCGACAATGTTATCGCGAGGCACGGTCGCCTTGCTAAAGCAACGAGG Buchnera_americana AGTAGACGTGGCCCTCACGGGCTCCCAGAAGGCCCTTTCCCTCCCAACCGGTATAGGTATCGTGTGCGCAAGCCCAAAGGCTCTTGAGGCCGCCAAGACTGCAAAATCAGTCCGTG---TGTTCTTTGACTGGGCCGACTACTTGAAGTTCTATAAGATGGGGACTTATTGGCCCTACACACCCTCCATTCAGCTTCTGTACGGGCTGAGGGCCGCTCTCGACCTTATCTTTGAGGAGGGGCTCGATAATGTTATCGCCAGGCATGGCCGCCTTGCTAAGGCCACAAGG Bungea_trifida CATAGATGTGGCTCTCACCGGTTCACAGAAAGCTCTTTCTCTTCCCACTGGAATGGGAATTGTGTGCGCGAGCCCTAAGGCTCTTGAAGCCACCAAGACTGCAAAATCAGTCAGGG---TGTTCTTCGACTGGAGCGATTACTTGAAGTTCTATAAAATGGGAACGTATTGGCCTTACACGCCTTCCATTCAGCTTCTGTATGGGCTAAGAGCAGCTTTGGACCTTCTTTTCGAGGAAGGGCTCGACAATGTTATTGCGAGGCATGGTCGCCTTGCCAAGGCGACAAGG Epifagus_virginiana AATAGATGTAGCACTTACTGGTTCACAGAAAGCTCTCTCTCTTCCCACTGGAATGGGAATTGTGTGTGCAAGCCGTAAAGCCCTTGAAGCCACTAAGACTTCAAAATCAGTCCGAG---TTTTCTTCGATTGGAACGATTACTTGAAGTTCTATAAATTGGGAACATATTGGCCTTACACCCCTTCCATTCAGCTTCTGTATGGGCTAAGAGCAGCTTTGGATCTTATTTTCGAGGAAGGACTTGACAATGTTATTGCAAGGCACGCTCGTCTTGCTAAGGCAACAAGG Euphrasia_frigida --------------------------AGAAAGCTCTCTCTCTCCCAACTGGAATGGGAATTGTGTGTGCAAGTCCYAAGGCTCTYGAAGCCTCTAAGACTGCAAAATCGGTCCGAG---TCTTCTTCGATTGGAGTGATTACCTGAAGTTCTATAAGATGGGGACATATTGGCCTTACACRCCTTCCATTCAGCTTCTGTATGGGCTGAGGGCTGCRCTRGATCTTCTTTTCGAGGAAGGTCTTGACAATGTTATCGCGAGGCATGGTCGACTTGCTAAGGCAACTAGG Euphrasia_sinuata AGTCGATGTGGCACTTACTGGTTCACAGAAAGCTCTCTCTCTCCCAACTGGAATGGGAATTGTGTGTGCAAGTCCCAAGGCTCTCGAAGCCTCTAAGACTGCAAAATCGGTCCGAG---TCTTCTTCGATTGGAGCGATTACCTCAAGTTCTATAAGATGGGGACATATTGGCCTTACACACCTTCAATTCAGCTTCTGTATGGGCTGAGGGCGGCGCTGGATCTTCTTTTCGAGGAAGGTCTTGACAATGTTATCGCGAGGCATGGTCGACTTGCTAAGGCAACTAGG Melampyrum_sylvaticum ----------------------------??????????????????????????????????????????????????????CTTGAAGCCTCTAAGACTGCGAAATCAGTCAGAG---TCTTCTTCGATTGGAACGACTACTTGAAGTTCTACAAGATGGGAACGTATTGGCCTTACACACCTTCCATTCAGCTTCTGTATGGGCTGAGGGCGGCTCTGGATCTTCTTTTTGAGGAAGGACTTGACAATGTTATCGCGAGGCACACTCGACTTGCTAAGGCAACAAGG Rhinanthus_alectorolophus ----------------------------??????????????????????????????????????????????????????CTTGAAGCCACTAAGACTGCAAAATCAGTCCGAG---TCTTCTTCGATTGGAATGATTACTTGAAGTTCTACAAGATGGGAACATATTGGCCTTACACTCCTTCCATTCAGCTTCTGTATGGGCTAAGGGCGGCTTTGGATCTTCTTTTTGAGGAAGGACTTGACAATGTTATCGCGAGGCATGGTCGACTTGCTAAGGCAACAAGG Lathraea_squamaria ----------------------------??????????????????????????????????????????????????????CTTGAAGCCACTAAGACTGCCAAATCTGTCCGAG---TCTTCTTCGATTGGAATGATTACTTGAAGTTCTACAAGATGGGAACATATTGGCCTTACACTCCTTCCATTCAGCTTCTGTATGGGCTAAGGGCGGCTTTGGATCTTCTTTTTGAGGAAGGACTTGACAATGTTATCGCAAGGCATGGTCGACTTGCTAAGGCAACAAGG Lindenbergia_philippensis ----------------------------?????TCTTTCTCTTCCAACTGGAATGGGAATTGTTTGTGCTAGCCCTAAGGCTCTTGAAGCCACCAAGACTGCGAAATCGGTCCGAG---TCTTCTTCGACTGGAATGATTACTTGAAGTTTTACAAATTGGGAACATATTGGCCTTACACTCCTTCCATTCAGCTTCTGTATGGGCTGAGAGCAGCTTTGGATCTTCTTTTTGAGGAAGGGCTTGACAATGTTATTGCAAGGCATGCTCGCCTTGCTAAGGCAACAAGG Macrosyringion_longiflorum CATAGACGTGGCACTTACCGGTTCACAAAAAGCTCTCTCTCTTCCAACTGGACTGGGAATCGTGTGTGCAAGCCCCAAGGCTCTTGAAGCTTCAAAGACTGCCAAATCTGTCCGAGTCTTCTTCTTCGATTGGAATGATTACTTGAAGTTCTATAAGATGGGAACATACTGGCCTTACACACCTTCCATTCAGCTTCTGTATGGGTTAAGAGCAGCTTTGGATCTTCTTTTTGAGGAAGGACTTGACAATGTTATCGCCAGGCACAATCGACTTGCTACGGTGACAAGG Nothobartsia_asperrima ----------------------------?????????????????????????????????GTGTGCGCAAGYCCCAAGGCTCTYGAAGCCRCTAAGACTGCAAAATCWGTCCGAG---TCTTCTTCGATTGGAATGATTACTTGAAGTCCTATAAGATGGGAACATATTGGCCTTACACACCTTCCATTCAGCTTCTGTATGGGCTAAGGGCGGCTTTGGATCTTCTTTTCGAGGAAGGWCTYGACAATGTTATYGCGAGGCACAGTCGACTTGCTACGGCRACAAGG Parentucellia_latifolia AGTAGACGTGGCACTTACTGGTTCACAAAAAGTTCTCTCTCTCCCAACTGGAATGGGAATTGTGTGTGCAAGTCCCAAGGCTCTTGAAGCCAGTAAGACTGCAAAGTCGGTCCGAG---TCTTCTTCGATTGGAATGATTACTTGAAGTTCTATAAGATGGGAACATATTGGCCTTACACACCTTCCATTCAGCTTCTGTATGGGCTAAGGGCAGCTTTGGATCTTCTTTTCGAGGAAGGTCTTGACAATGTTATTGCGAGGCACGGTCGACTTGCTAAGGCAACAAGG Odontites_bolligeri GATAGACGTGGCACTTACTGGTTCACAAAAAGCTCTCTCTCTTCCAACTGGAATGGGAATCGTGTGCGCAAGCCCCAAGGCTCTTGAAGCCACTAAGACTGCAAAATCTGTCAGAG---TCTTCTTCGATTGGAATGATTACTTGAAGTTCTATAAGATGGGAACATACTGGCCTTACACACCTTCCATTCAACTTCTGTATGGGTTAAGAGCAGCTTTGGATCTTCTTTTTGAGGAAGGACTCGACAATGTTATCGCGAGGCACAATCGCCTTGCTACGGCAACAAGG Odontites_luteus GATAGACGTGGCACTTACTGGTTCACAAAAAGCTCTCTCTCTTCCAACTGGAATGGGAATCGTCTGCGCAAGCCCCAAGGCTCTTGAAGCCACTAAGACTGCAAAATCTGTCCGAG---TTTTCTTCGATTGGAATGATTACTTGAAGTTCTATAAGATGGGAACATACTGGCCTTACACACCTTCCATTCAGCTTCTGTATGGGCTAAGAGCAGCTTTGGATCTTCTTTTTGAGGAAGGACTCGACAATGTTATCGCGAGGCACAATCGACTTGCTACGGCAACAAGG Odontites_vernus ----------------------------???GCTCTCTCTCTTCCAACTGGAATGGGAATMGTGTGCGCAAGCCCCAAGGCTCTTGAAGCCACTAAGACTGCAAAATCTGTCCGAG---TTTTCTTCGATTGGAATGATTACTTGAAGTTCTATAAGATGGGAACATACTGGCCTTACACACCTTCCATWCAGCTTCTGTATGGTCTAARAGCAGCTTTGGATCTTCTTTTTGAGGAAGGACTCGACAATGTTATCGCGAGGCACAATCGACTTGCTACGGCAACMAGG Odontitilla_virgata AGTAGACGTGGCACTTACTGGTTCACAAAAAGCTCTCTCTCTCCCAACTGGAATGGGAATTGTGTGTGCAAGTCCCAAGGCTCTTGAAGCCACTAAGACTGCAAAATCAGTCCGAG---TCTTCTTTGATTGGAATGATTACTTGAAGTTCTATAAGATGGGAACATATTGGCCTTACACACCTTCCATTCAGCTTCTGTATGGGCTAAGGGCGGCTTTGGATCTTCTTTTCGAGGAAGGTCTTGACAATGTTATCGCGAGGCACAGTCGACTTGCTAAGGCAACAAGG Phelipanche_aegyptiaca -ATAGATGTGGCACTTACAGGTTCACAGAAAGCTCTTTCTCTTCCAACTGGAATGGGAATTGTGTGTGCAAGCCCTAAGGCTCTTGAAGCCACTAAAACTGCAGAATCAATCAGGG---TTTTCTTCGACTGGAACGACTACTTGAAGTGCTATAAGTTGGGAACTTATTGGCCTTACACCCCTTCCATTCAACTTCTTTATGGCCTAAGAGCAGCTTTGGATCTTATTTTTGAGGAAGGACTTGACAATGTGATTGAAAGGCACGCTCGCCTTGGTAAAGCAACGAGG Orobanche_flava ----------------------------AAAGCTCTCTCTCTTCCGAGCGGAATGGGAATTGTGTGTGCAAGCCCAAAGGCTCTTGAAGCCACAAAAACTGCAAAATCAGTCAGAG---TTTTCTTCGATTGGAATGATTACTTGAAGTTCTATAAATTGGGAACCTATTGGCCTTACACCCCTTCCATTCAGCTTCTTTACGGGCTAAGAGCAGCTTTGGATCTTATTTTTGAAGAAGGACTTGACAATGTTATTGCAAGGCACGCTCGCCTTGCTAAGGCTACGAGG Pedicularis_aspleniifolia AATAGATGTTGCTCTTACCGGTTCCCAGAAAGCTCTCTCTCTCCCCACTGGTATGGGCATTGTGTGTGCGAGCCCAAAGGCTCTTGAAGCCACTAAGACTGCAAAATCAGTCAGAG---TGTTCTTCGACTGGAACGATTACTTGAAGTTCTATAAACTGGGGACGTATTGGCCTTACACCCCTTCCATTCAGCTTCTGTATGGCCTTAGAGCCGCTTTGGATCTTCTTTTCGAGGAAGGGCTCGACAATGTTATCGCYAGGCAYGGTCGCCTTGCTAAGGCAACGAGG Pedicularis_decora ----------------------------????????CTCTCTCCCCACTGGTATGGGCATTGTGTGCGCGAGCCCAAAGGCTCTTGAAGCCACTAAGACTGCAAAATCAGTCAGAG---TGTTCTTCGACTGGAACGATTACTTGAAGTTCTATAAACTGGGGACGTATTGGCCTTACACCCCTTCCATTCAGCTTCTGTATGGCCTTAGAGCCGCTTTGGATCTTCTTTTCGAGGAAGGGCTCGACAATGTTATCGCCAGGCACGGTCGCCTTGCAAAGGCAACGAGG Pedicularis_densispica ----------------------------????????CTCTCTCCCCACTGGTATGGGCATTGTGTGTGCGAGCCCAAAGGCTCTTGAAGCCACTAAGACTGCAAAATCAGTCAGAG---TGTTCTTCGACTGGAAYGATTACTTGAAGTTCTATAAACTGGGGACGTATTGGCCTTACACACCTTCCATTCAGCTTCTTTATGGCCTCAAAGCGGCTTTGGATCTTCTTTTCGAGGAAGGGCTCGACAATGTTATCGCCAGGCACGGTCGCCTTGCAAAGGCAACGAGG Pedicularis_elwesii ----------------------------???????????????????CTGGTATGGGCATTGTGTGTGCGAGCCCAAAGGCTCTTGAAGCCACTAAGACTGCAAAATCAGTCAGAG---TGTTCTTCGACTGGAGCGATTACTTGAAGTTCTATAAACTGGGGACGTATTGGCCTTACACCCCTTCCATCCAGCTTCTGTATGGCCTTAGGGCGGCTTTGGATCTTCTTTTCGAGGAAGGGCTCGACAATGTTATCGCCAGGCACGGTCGCCTTGCTAAGGCAACGAGG Pedicularis_lachnoglossa AGTAGATGTTGCTCTTACCGGTTCCCAGAAAGCTCTCTCTCTCCCCACTGGTATGGGCATTGTGTGTGCGAGCCCAAAGGCTCTTGAAGCCACTAAGACTGCAAAATCAGTCAGAG---TGTTCTTCGACTGGAACGATTACTTGAAGTTCTATAAACTGGGGACGTATTGGCCTTACACACCTTCCATTCAGCTTCTGTATGGCCTTAGAGCGGCTTTGGATCTTCTTTTCGAGGAAGGGCTCGACAATGTTATCGCCAGGCACGGTCGCCTTGCAAAGGCAACGAGG Pedicularis_rostratospicata ----------------------------???GCTCTCTCTCTCCCCACTGGTATGGGCATTGTGTGTGCGAGCCCAAAGGCTCTTGAAGCCACTAAGACTGCAAAATCAGTCAGAG---TGTTCTTCGACTGGAATGATTACTTGAAGTTCTATAAACTGGGGACGTATTGGCCTTACACCCCTTCCATTCAGCTTCTGTATGGCCTTAGAGCCGCTTTGGATCTTCTTTTCGAGGAAGGGCTCGACAATGTTATCGCCAGGCACGGTCGCCTTGCTAAGGCAACGAGG Pedicularis_verticillata ----------------------------????????????TCTCCCACTGGTATGGGCATTGTGTGTGCGAGCCCAAAGGCTCTTGAAGCAACTAAGACTGCAAAATCAGTCAGAG---TGTTCTTCGACTGGAGTGATTACTTGAAGTTCTATAAAATGGGGACGTATTGGCCTTACACCCCTTCCATTCAGCTTCTGTATGGCCTTAGAGCCGCTTTGGATCTTCTTTTCGAGGAAGGGCTCGACAATGTTATCGCCAGGCACGGTCGCCTTGCAAAGGCAACGAGG Pterygiella_cylindrica ----------------------------?????TCTCTCGCTTCCTACTGGCATGGGAATTGTGTGTGCAAGCCCTAAGGCTCTTGAAGCTACTAAGACTGCGAAATCAGTCCGAG---TCTTCTTCGATTGGAGCGACTACTTGAAGTTCTACAAATTGGGAACATATTGGCCTTACACCCCTTCCATTCAGCTTCTGTATGGGCTACGTGCAGCTTTGGATCTTCTTTTTGAGGAAGGACTTGACAATGTTATCGCGAGGCACGGTCGTCTTGCTAAGGCAACAAGG Pterygiella_duclouxii CATAGACGTGGCGCTAACTGGTTCACAGAAAGCTCTCTCCCTTCCTACTGGTATGGGAATTGTGTGTGCCAGCCCTAAGGCTCTTGAAGCTACTAAGACTGCGAAATCAGTCCGAG---TCTTCTTCGATTGGAGCGACTACTTGAAGTTCTACAAATTGGGAACATATTGGCCTTACACCCCTTCCATTCAGCTTCTGTATGGGCTACGTGCAGCTTTGGATCTTCTTTTTGAGGAAGGACTTGACAATGTTATCGCGAGGCACGGTCGTCTTGCTAAGGCAACAAGG Radamaea_montana -------------------------------------TCTCTCCCGACCGGGATGGGTATCGTGTGTGCAAGCCCGAAGGCTCTCGAGGCTGCCAAGACTGCAAAATCAGTCCGTG---TGTTCTTTGACTGGGCCGACTACTTGAAGTTCTATAAGATGGGGACTTATTGGCCCTACACACCTTCCATTCAGCTTCTGTATGGACTGAGGGCGGCTCTCGACCTTATCTTTGAGGAGGGGCTCGAAAATGTTTTCGCCAGGCATGCCCGCCTTGCTAGGGCCACAAGG Rehmannia_piasezkii ----------------------------AAAGCTCTTTCTCTTCCTACTGGAATGGGAATTGTGTGCGCTAGCCCAAAGGTTCTTGAAGCCACTAAGACTGCAAAATCAGTCCGAG---TTTTCTTCGACTGGAAYGATTACTTGAAGTTCTATAAATTGGGAACATATTGGCCTTACACCCCTTCCATTCAGCTTCTCTATGGSCTAAGAGCAGCTCTGGATCTCCTTTTTGAGGAAGGACTTGACAACGTTATCGCAAGGCACGGTCGACTTGCTAAGGCAACACGG Mimulus_guttatus --TAGATGTGGCTCTTACCGGTTCGCAGAAGGCACTTTCTCTTCCCACCGGAATGGGGATTGTGTGCGCGAGCCCCAAGGCTCTCGAGGCCTCCAAGACTGCAACATCGGTTCGAG---TTTTCTTCGATTGGAACGATTACTTGAAGTTCTACAAATTGGGCAGTTATTGGCCATACACACCTTCCATTCAGCTTCTCTACGGTCTTAGAGCCGCTTTGGATCTCCTCTTCGAGGAAGGCCTCGATAATGTCATCGCAAGGCACACTCGCCTCGCCAAAGCAACAAGG Schwalbea_americana AATAGACGTGGCTCTTACCGGTTCACAGAAAGCTCTCTCTCTTCCCACTGGGATGGGAATTGTGTGCGCGAGCCCTAAGGCTCTTGAGGCCACCAAGACTGCAAAATCGGTCAGAG---TGTTCTTCGACTGGGGCGATTACTTGAAGTTCTATAAATTGGGGACGTATTGGCCTTACACCCCTTCCATTCAGCTTCTGTATGGGCTAAGAGCAGCTTTGGATCTCCTCTTTGAGGAAGGTCTTGACAATGTTATCGCGAGGCACGGTCGCCTTGCCAAGGCGACAAGG Striga_hermonthica ----GACGTGGCCCTCACTGGCTCCCAGAAGGCACTTTCCCTGCCGACTGGGATGGGCATAGTGTGTGCGAGCCCCAAGGCGCTCGAGGCCGCCAAGACTGCGAAATCAGTGCGTG---TGTTCTTCGACTGGGCCGACTACTTGAAGTTCTATAAGATGGGGACTTATTGGCCATACACACCTTCCATTCAGCTTCTCTATGGGCTGAGGGCCGCTCTCGACCTTCTCTTTGAGGAGGGGCTCGAGAATGTTTTTGCCAGGCATTCCCGCCTTGCTAAGGCTACCAGG Striga_bilabiata ----------------------------?????????????TCCCGACTGGGATGGGCATAGTGTGTGCGAGCCCCAAGGCGCTCGAGGCCGCCAAGACTGCGAAATCAGTGCGTG---TGTTCTTCGACTGGGCCGACTACTTGAAGTTCTATAAGATGGGGACTTATTGGCCCTACACACCTTCCATTCAGCTTCTCTATGGGCTGAGGGCGGCTCTCGACCTTCTMTTTGAGGAGGGGCTYGASAATGTTTTTGCCAGGCATGCCCGCCTTGCTAAGGCTACCAGG Striga_gesnerioides ----------------------------AAGGCACTTTCCCTGCCGACTGGGATGGGCATAGTGTGTGCGAGCCCCAAGGCGCTCGAGGCTGCCAAGACTGCAAAATCAGTGCGTG---TGTTCTTCGACTGGGCCGACTACTTGAAGTTCTATAAGATGGGGACTTATTGGCCATACACACCTTCCATTCAGCTTCTCTATGGGCTGAGGGCCGCTCTCGACCTTCTCTTTGAGGAGGGGCTCGAGAATGTTTTTGCCAGGCATGCCCGCCTTGCTAAGGCTACCAGG Triaenophora_shennongjiaensis AGTAGATGTGGCTCTTACTGGTTCACAAAAAGCTCTTTCTCTTCCTACTGGAATGGGAATTGTTTGCGCAAGCCCAAAGGCTCTTGAAGCCTCCAAGACTGCAAAATCAGTCAGAG---TTTTCTTCGACTGGAATGATTACTTGAAGTTCTATAAATTGGGGACATATTGGCCATACACCCCTTCCATTCAGCTTCTTTATGGTCTGAGAGCAGCTTTGGATCTTATTTTTGAGGAGGGACTGGACAATGTTATTGCAAGGCACGGTCGACTTGCCAAGGCGACAAGG Triphysaria_pusilla AGTAGATGTTGCTCTTACCGGTTCCCAGAAAGCTCTTTCTCTCCCGACTGGACTGGGGATTGTGTGTGCCAGCCCAAAGGCTCTTGAAGYAGCTAAGACTTCAAAGTCGGTCCGAG---TTTTCTTCGACTGGAGTGATTACTTGAGGTTCTATAAAATAGGGACGTATTGGCCTTACACCCCTTCCATTCAGCTTCTGTATGGGCTAAGAGCCGCTTTGGACCTTCTTTTCGAGGAAGGGCTTGATAATGTTATTGCTAGGCATGGTCGTCTTGCTARGGCTACAAGA Triphysaria_versicolor AGTAGATGTTGCTCTTACCGGTTCCCAGAAAGCTCTTTCTCTCCCGACTGGACTGGGGATTGTGTGTGCCAGCCCAAAGGCTCTTGAAGCAGCTAAGACTTCAAAGTCGGTCCGAG---TTTTCTTCGACTGGAGTGATTACTTGAGGTTCTATAAAATAGGGACGTATTGGCCTTACACCCCTTCCATTCAGCTTCTGTATGGGCTAAGAGCCGCTTTGGACCTTCTTTTCGAGGAAGGGCTTGATAATGTTATTGCTAGGCATGGTCGCCTTGCAAAGGCTACAAGA Paulownia_fargesii AATAGACGTGGCTCTTACTGGTTCACAGAAAGCTCTTTCTCTTCCCACTGGAATGGGAATTGTGTGTGCAAGCCCTAAGGCTCTTGAAGCCACTAAGACTGCAAAATCAGTCAGAG---TTTTCTTCGACTGGAATGATTACTTGAAGTTCTATAAATTGGGAACGTATTGGCCATACACACCTTCCATTCAGCTTCTGTATGGGCTAAGAGCAGCATTGGATCTCATTTTTGAGGAAGGACTTGACAATGTTATTGCAAGGCACGGTCGCCTTGCCAAGGCAACAAGG ; end; begin mrbayes; charset Subset1 = 1-289\3; charset Subset2 = 2-289\3; charset Subset3 = 3-289\3; partition PartitionFinder = 3:Subset1, Subset2, Subset3; set partition=PartitionFinder; lset applyto=(1) nst=2 rates=gamma ngammacat=4; lset applyto=(2) nst=6 rates=invgamma ngammacat=4; prset applyto=(2) statefreqpr=fixed(equal); lset applyto=(3) nst=6 rates=invgamma ngammacat=4; prset applyto=(3) statefreqpr=fixed(equal); prset applyto=(all) ratepr=variable; unlink statefreq=(all) revmat=(all) shape=(all); link topology=(all) brlens=(all); mcmcp nruns=4 nchains=1 ngen=4000000 samplefreq=1000 printfreq=5000 diagnfreq=20000 filename=scg_agt1_out2gplus_PRIMERFREE; end; begin trees; tree ML = [&R] ((Triaenophora_shennongjiaensis:0.06654,(Paulownia_fargesii:0.0241,((Rehmannia_piasezkii:0.05557,(((Pterygiella_cylindrica:0.0052,Pterygiella_duclouxii:0.00923)[&label=100]:0.06609,(Lindenbergia_philippensis:0.06367,(Lathraea_squamaria:0.01287,((Melampyrum_sylvaticum:0.05875,((Odontitilla_virgata:0.00388,((Euphrasia_sinuata:0.01526,Euphrasia_frigida:0.00463)[&label=100]:0.05749,Parentucellia_latifolia:0.02097)[&label=63]:0.00728)[&label=57]:0.01657,(Nothobartsia_asperrima:0.00658,((Odontites_luteus:0.00385,Odontites_vernus:0.00444)[&label=80]:0.00348,(Macrosyringion_longiflorum:0.05084,Odontites_bolligeri:0.01156)[&label=69]:0.00433)[&label=97]:0.03317)[&label=55]:0.01173)[&label=32]:0.00739)[&label=44]:0.01765,Rhinanthus_alectorolophus:0.0)[&label=16]:0.00444)[&label=76]:0.03548)[&label=13]:0.01201)[&label=20]:0.01556,(Epifagus_virginiana:0.03279,(Orobanche_flava:0.04672,Phelipanche_aegyptiaca:0.07959)[&label=76]:0.02771)[&label=28]:0.00864)[&label=18]:0.01489)[&label=9]:0.0,(Brandisia_hancei:0.03634,((Schwalbea_americana:0.05266,Bungea_trifida:0.03894)[&label=19]:0.00942,((((Pedicularis_rostratospicata:0.00421,Pedicularis_aspleniifolia:0.0)[&label=27]:0.0,((Pedicularis_lachnoglossa:0.0,Pedicularis_densispica:0.0136)[&label=76]:0.01032,(Pedicularis_verticillata:0.03258,Pedicularis_decora:0.00418)[&label=7]:0.0)[&label=17]:0.00502)[&label=18]:0.00537,Pedicularis_elwesii:0.01346)[&label=60]:0.02957,((Triphysaria_versicolor:0.00534,Triphysaria_pusilla:0.0026)[&label=100]:0.09493,(Buchnera_americana:0.02495,(Radamaea_montana:0.01753,(Striga_bilabiata:0.0,(Striga_gesnerioides:0.00883,Striga_hermonthica:0.00429)[&label=85]:0.01442)[&label=100]:0.08453)[&label=81]:0.04068)[&label=100]:0.22647)[&label=26]:0.03269)[&label=41]:0.04221)[&!rotate=true,label=45]:0.02112)[&!rotate=true,label=39]:0.02681)[&!rotate=true,label=23]:0.01819)[&!rotate=true,label=13]:0.01763)[&!rotate=true]:0.105895,Mimulus_guttatus:0.105895); tree BI = [&R] 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end;