!------------------------------------------------------------------------------- ! aed_phyto_pars !------------------------------------------------------------------------------- ! p_name [string]: Name of phytoplankton group ! p_initial [real]: Initial concentration of phytoplankton (mmol C/m3) ! p0 [real]: ! w_p [real]: sedimentation rate (m/d) ! Ycc [real]: carbon to chlorophyll ratio (mg C/mg chla) !-- GROWTH parameters ! R_growth [real]: Phyto max growth rate @20C (/day) ! fT_Method [int]: Specifies temperature limitation function of growth (-); 0 = no temperature limitation 1= CAEDYM style ! theta_growth [real]: Arrenhius temperature scaling for growth function (-) ! T_std [real]: Standard temperature (deg C) ! T_opt [real]: Optimum temperature (deg C) ! T_max [real]: Maximum temperature (deg C) !-- LIGHT parameters ! lightModel [int]: Type of light response function [0 = no photoinhibition; 1 = photoinhibition] ! I_K [real]: Half saturation constant for light limitation of growth (microE/m^2/s) used if lightModel=0 ! I_S [real]: saturating light intensity (microE/m^2/s) used if lightModel=1 ! KePHY [real]: Specific attenuation coefficient ((mmol C m^3^-1)^1 m^-1) !-- RESPIRATION parameters ! f_pr [real]: Fraction of primary production lost to exudation (-) ! R_resp [real]: Phytoplankton respiration/metabolic loss rate @ 20 (degC) ! theta_resp [real]: Arrhenius temperature scaling factor for respiration (-) ! k_fres [real]: Fraction of metabolic loss that is true respiration (-) ! k_fdom [real]: Fraction of metabolic loss that is DOM (-) !-- SALINITY parameters ! salTol [int]: Type of salinity limitation function (-) ! S_bep [real]: Salinity limitation value at maximum salinity S_maxsp (-) ! S_maxsp [real]: Maximum salinity (g/kg) ! S_opt [real]: Optimal salinity (g/kg) !-- NITROGEN parameters ! simDINUptake [int]: Simulate DIN uptake (0 = false, 1 = true) ! simDONUptake [int]: Simulate DON uptake (0 = false, 1 = true) - currently not functioning ! simNFixation [int]: Simulate N fixation (0 = false, 1 = true) ! simINDynamics [int]: Simulate internal N (0 = assumed fixed C:N, 2 = dynamic C:N) ! N_o [real]: Nitrogen concentraion below which uptake is 0 (mmol N/m^3) ! K_N [real]: Half-saturation concentration of nitrogen (mmol N/m^3) ! X_ncon [real]: Constant internal nitrogen concentration (mmol N/ mmol C) used if simINDynamics = 0 or 1 ! X_nmin [real]: minimum internal nitrogen concentration (mmol N/ mmol C) used if simINDynamics = 2 ! X_nmax [real]: maximum internal nitrogen concentration (mmol N/ mmol C) used if simINDynamics = 2 ! R_nuptake [real]: maximum nitrogen uptake rate(mmol N/m^3/d) used if simINDynamics = 2 ! k_nfix [real]: growth rate reduction under maximum nitrogen fixation (/day) used if simNFixation >0 ! R_nfix [real]: nitrogen fixation rate (mmol N/mmol C/day) !-- PHOSPHORUS parameters ! simDIPUptake [real]: Simulate DIP uptake (0 = false, 1 = true) ! simIPDynamics [real]: Simulate internal phosphorus dynamics (0 = assumed fixed C:P, 2 = dynamic C:P) ! P_0 [real]: Phosphorus concentraion below which uptake is 0 (mmol P/m^3) ! K_P [real]: Half-saturation concentration of phosphorus (mmol P/m^3) ! X_pcon [real]: Constant internal phosphorus concentration (mmol P/ mmol C) used if simIPDynamics = 0 or 1 ! X_pmin [real]: Minimum internal phosphorus concentration (mmol P/mmol C) used if simIPDynamics = 2 ! X_pmax [real]: Maximum internal phosphorus concentration (mmol P/mmol C) used if simIPDynamics = 2 ! R_puptake [real]: Maximum phosphorus uptake rate(mmol P/m^3/d) used if simIPDynamics = 2 !-- SILICA parameters ! simSiUptake [int]: Simulate Si uptake (0 = false, 1 = true) ! Si_0 [real]: Silica concentraion below which uptake is 0 (mmol Si/m^3) ! K_Si [real]: Half-saturation concentration of silica (mmol Si /m3) ! X_sicon [real]: Constant interal silica concentration (mmol Si/mmol C) !------------------------------------------------------------------------------- !p_name,p_initial,p0,w_p,Ycc,Pmax,fT_Method,vT,Tstd,Topt,Tmax,lightModel,IK,ISt,KePHY,krp,kr,vr,fres,fdom,salTol,Bep,maxSP,Sop,simDINUptake,simDONUptake,simNFixation,simINDynamics,No,KN,INcon,INmin,INmax,UNmax,gthRedNFix,NFixationRate,simDIPUptake,simIPDynamics,Po,KP,IPcon,IPmin,IPmax,UPmax,simSiUptake,Sio,KSi,Sicon &phyto_data pd = CYANOPCH1,1,1,1,50,1.2,1,1.09,20,30,37,1,15,250,0.0012,0.003,0.04,1.08,0.75,0.25,0,2,35,0.01,1,0,0,2,0,1,0.035,0.06,0.206,0.068,1,0,1,2,0,0.05,0.0015,0.00077,0.0089,0.0039,0,0,0,0,CYANONPCH2,15,1,1,50,1.2,1,1.05,20,28.5,37,1,15,250,0.0012,0.005,0.04,1.08,0.75,0.25,0,2,35,0.01,1,0,1,2,0,1,0.035,0.06,0.137,0.1,0.67,0.13,1,2,0,0.05,0.0015,0.0019,0.0089,0.0039,0,0,0,0,CHLOROPCH3,10,0.03,-0.01,40,2,1,1.08,20,28,33,1,50,170,0.0012,0.005,0.078,1.05,0.75,0.25,0,2,35,0.01,1,0,0,2,0,2.7,0.035,0.077,0.12,0.051,1,0,1,2,0,0.07,0.0015,0.0023,0.023,0.0027,0,0,0,0,DIATOMPCH4,60,0.03,-0.85,40,2.25,1,1.06,11,13,20,1,10,150,0.0012,0.002,0.055,1.08,0.75,0.25,0,2,35,0.01,1,0,0,2,0,3.5,0.035,0.077,0.129,0.13,1,0,1,2,0,0.15,0.0015,0.0081,0.033,0.007,1,0,2.5,0.4 /