The data herein are associated with the manuscript "3D sorghum reconstructions from depth images enable identification of quantitative trait loci regulating shoot architecture". There are 4 directories containing data corresponding to four timepoints. For each timepoint, each RIL is represented by three biological replicates (i.e. three plants). For each plant, a single RGB image and 12 depth images are present, as well as the segmented mesh for that plant. Please note that the files are split into a set of 7 files (aa-af) corresponding to a compressed archive (.tar.gz) that has been split (using split). These files will need to be concatenated (using cat) to restore the original archive (see http://wiki.datadryad.org/Large_File_Transfer). In the archive, each directory represents a timepoint, and each timepoint contains directories with images and a mesh corresponding to RIL lines from the BTx623 x IS3620C population. Each RIL has three replicates, and the suffix indicates the replicate number. The code base used to process the images to the segmented mesh can be found at https://github.com/MulletLab/SorghumReconstructionAndPhenotyping If you have further questions, please see the manuscript or contact Ryan McCormick at ryanabashbash@tamu.edu.