##fileformat=VCFv4.2 ##fileDate=20201019 ##source=freeBayes v1.3.1-dirty ##reference=reference.fasta ##contig= ##phasing=none ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT RumaceF011_P RumaceF111_P RumaceF211_P dDocent_Contig_1 13 . C A 11138.3 . 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T G 24929.5 . AB=0.665835;ABP=290.376;AC=3;AF=0.5;AN=6;AO=801;CIGAR=1X;DP=1203;DPB=1203;DPRA=0;EPP=1690.63;EPPR=780.847;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.8639;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.965044;PAIREDR=0.945137;PAO=0;PQA=0;PQR=0;PRO=0;QA=31812;QR=15874;RO=401;RPL=0;RPP=1742.36;RPPR=873.771;RPR=801;RUN=1;SAF=795;SAP=1690.63;SAR=6;SRF=390;SRP=780.847;SRR=11;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:300:93,207:93:3609:207:8174:-644.582,0,-234.545 0/1:352:114,238:114:4517:238:9384:-737.967,0,-300.511 0/1:551:194,356:194:7748:356:14254:-1115.92,0,-531.054 dDocent_Contig_3 12 . G A 1026.33 . 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AB=0.149837;ABP=329.969;AC=3;AF=0.5;AN=6;AO=46;CIGAR=1X;DP=307;DPB=307;DPRA=0;EPP=94.401;EPPR=407.238;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.978261;PAIREDR=0.919231;PAO=0;PQA=0;PQR=0;PRO=0;QA=1799;QR=10213;RO=260;RPL=0;RPP=102.898;RPPR=567.593;RPR=46;RUN=1;SAF=45;SAP=94.401;SAR=1;SRF=240;SRP=407.238;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:94:72,22:72:2798:22:862:-49.5908,0,-223.659 0/1:75:66,9:66:2590:9:346:-8.91643,0,-210.668 0/1:138:122,15:122:4825:15:591:-11.9029,0,-392.541 dDocent_Contig_6 24 . C G 801.445 . AB=0.302752;ABP=39.8456;AC=2;AF=0.333333;AN=6;AO=33;CIGAR=1X;DP=148;DPB=148;DPRA=1.39744;EPP=74.6689;EPPR=252.73;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1287;QR=4444;RO=115;RPL=0;RPP=74.6689;RPPR=252.73;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=115;SRP=252.73;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:39,0:39:1469:0:0:0,-11.7402,-132.462 0/1:59:42,17:42:1623:17:671:-42.9598,0,-128.556 0/1:50:34,16:34:1352:16:616:-40.7076,0,-106.893 dDocent_Contig_7 9 . A T 1097.2 . AB=0.58209;ABP=6.93191;AC=3;AF=0.5;AN=6;AO=39;CIGAR=1X;DP=67;DPB=67;DPRA=0;EPP=87.6977;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1493;QR=1058;RO=28;RPL=0;RPP=87.6977;RPPR=63.8115;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:5,21:5:195:21:804:-64.8585,0,-10.0974 0/1:24:15,9:15:564:9:345:-24.184,0,-43.8729 0/1:17:8,9:8:299:9:344:-26.2002,0,-22.1458 dDocent_Contig_9 10 . C T 54831.1 . AB=0.185676;ABP=1620.64;AC=3;AF=0.5;AN=6;AO=350;CIGAR=1X3M1X;DP=1885;DPB=1885;DPRA=0;EPP=763.026;EPPR=131.127;GTI=0;LEN=1;MEANALT=6.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=13649;QR=2288;RO=59;RPL=0;RPP=763.026;RPPR=131.127;RPR=350;RUN=1;SAF=350;SAP=763.026;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:752:21,159,549:21:814:159,549:6147,21315:-2179.67,-1681.14,-1700.15,-437.994,0,-339.604 1|0:402:16,57,323:16:624:57,323:2250,12492:-1154.34,-974.019,-1008.15,-133.854,0,-87.9136 1|0:731:22,134,561:22:850:134,561:5252,21890:-2154.63,-1729.38,-1758.84,-362.095,0,-263.023 dDocent_Contig_11 47 . C T 2474.58 . AB=0.502994;ABP=3.0233;AC=3;AF=0.5;AN=6;AO=84;CIGAR=1X;DP=167;DPB=167;DPRA=0;EPP=185.414;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3360;QR=3252;RO=83;RPL=0;RPP=185.414;RPPR=183.243;RPR=84;RUN=1;SAF=84;SAP=185.414;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:23,30:23:920:30:1203:-92.5913,0,-67.1529 0/1:53:29,24:29:1089:24:951:-69.9395,0,-82.3285 0/1:61:31,30:31:1243:30:1206:-90.4496,0,-93.7752 dDocent_Contig_13 7 . T G 2366.2 . AB=0.442553;ABP=9.74648;AC=3;AF=0.5;AN=6;AO=104;CIGAR=1X;DP=235;DPB=235;DPRA=0;EPP=228.843;EPPR=287.473;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3467;QR=4903;RO=131;RPL=0;RPP=228.843;RPPR=287.473;RPR=104;RUN=1;SAF=104;SAP=228.843;SAR=0;SRF=131;SRP=287.473;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:68:38,30:38:1440:30:1011:-70.8098,0,-109.412 0/1:85:63,22:63:2376:22:792:-46.0111,0,-188.472 0/1:82:30,52:30:1087:52:1664:-125.322,0,-73.4345 dDocent_Contig_14 12 . A T 138.259 . AB=0.151515;ABP=72.629;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=101;DPB=101;DPRA=0;EPP=29.068;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=473;QR=3587;RO=89;RPL=0;RPP=29.068;RPPR=196.271;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:23,6:23:920:6:244:-13.609,0,-74.3756 0/0:35:33,2:33:1333:2:68:0,-4.08142,-113.776 0/1:37:33,4:33:1334:4:161:-3.73716,0,-109.179 dDocent_Contig_15 46 . G A 94.7692 . 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AB=0.156627;ABP=88.0117;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=132;DPB=132;DPRA=0.846939;EPP=31.2394;EPPR=261.416;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=516;QR=4661;RO=119;RPL=0;RPP=31.2394;RPPR=261.416;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=119;SRP=261.416;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:34,6:34:1323:6:243:-10.207,0,-107.287 0/1:43:36,7:36:1384:7:273:-11.9912,0,-111.872 0/0:49:49,0:49:1954:0:0:0,-14.7505,-176.06 dDocent_Contig_19 7 . A T 8581.91 . 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AB=0.294118;ABP=9.26925;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=56;DPB=56;DPRA=0.871795;EPP=13.8677;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=53.9804;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.882353;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=2033;RO=51;RPL=0;RPP=13.8677;RPPR=113.755;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:474:0:0:0,-3.61236,-40.0146 0/0:27:27,0:27:1088:0:0:0,-8.12781,-86.5654 0/1:17:12,5:12:471:5:204:-13.6265,0,-35.1653 dDocent_Contig_27 14 . C T 204.47 . AB=0.217391;ABP=34.9215;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1X;DP=153;DPB=153;DPRA=0;EPP=35.5824;EPPR=302.673;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=589;QR=5468;RO=138;RPL=0;RPP=35.5824;RPPR=302.673;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=138;SRP=302.673;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:36,10:36:1412:10:394:-21.9694,0,-113.492 0/0:49:45,4:45:1793:4:154:0,-0.518467,-147.356 0/0:58:57,1:57:2263:1:41:0,-13.3652,-199.733 dDocent_Contig_28 45 . A G 679.14 . AB=0.244094;ABP=75.2502;AC=2;AF=0.333333;AN=6;AO=34;CIGAR=2X;DP=172;DPB=172;DPRA=0;EPP=76.8404;EPPR=302.673;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1329;QR=5432;RO=138;RPL=0;RPP=76.8404;RPPR=302.673;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=138;SRP=302.673;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:45:42,3:42:1661:3:118:0,-2.54363,-138.73 0|1:60:45,15:45:1750:15:582:-34.6601,0,-139.664 0|1:67:51,16:51:2021:16:629:-36.7768,0,-161.921 dDocent_Contig_29 20 . C T 125.619 . AB=0.25;ABP=16.0391;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=109;DPB=109;DPRA=0.738636;EPP=20.3821;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=317;QR=4044;RO=101;RPL=0;RPP=20.3821;RPPR=222.329;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:39,2:39:1558:2:81:0,-4.6565,-132.776 0/1:24:18,6:18:708:6:236:-14.3858,0,-56.8205 0/0:44:44,0:44:1778:0:0:0,-13.2453,-160.229 dDocent_Contig_30 98 . N A 139.439 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=145;QR=0;RO=0;RPL=5;RPP=13.8677;RPPR=0;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:77:-7.18411,-0.90309,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:68:-6.45793,-0.60206,0 dDocent_Contig_31 49 . G A 96.8465 . AB=0.11828;ABP=120.713;AC=1;AF=0.166667;AN=6;AO=31;CIGAR=1X;DP=432;DPB=432;DPRA=0;EPP=46.79;EPPR=716.558;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.977556;PAO=0;PQA=0;PQR=0;PRO=0;QA=1210;QR=15731;RO=401;RPL=3;RPP=46.79;RPPR=716.558;RPR=28;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=401;SRP=873.771;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:198:190,8:190:7406:8:314:0,-30.9808,-637.595 0/0:141:129,12:129:5070:12:461:0,-0.61138,-414.38 0/1:93:82,11:82:3255:11:435:-11.5082,0,-265.018 dDocent_Contig_32 158 . G T 389.445 . AB=0.258824;ABP=45.9544;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1X;DP=85;DPB=85;DPRA=0;EPP=34.9902;EPPR=131.265;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=767;QR=2150;RO=63;RPL=20;RPP=34.9902;RPPR=131.265;RPR=2;RUN=1;SAF=0;SAP=50.7827;SAR=22;SRF=0;SRP=139.813;SRR=63;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:18,8:18:600:8:275:-17.2552,0,-46.4808 0/1:38:27,11:27:930:11:380:-23.0864,0,-72.5661 0/1:21:18,3:18:620:3:112:-4.12467,0,-49.7936 dDocent_Contig_34 38 . A G 1148.62 . AB=0.335821;ABP=34.3832;AC=3;AF=0.5;AN=6;AO=45;CIGAR=1X3M1X;DP=134;DPB=134;DPRA=0;EPP=100.727;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1771;QR=3473;RO=89;RPL=0;RPP=100.727;RPPR=196.271;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:39:22,17:22:870:17:664:-48.3515,0,-66.8753 0|1:31:28,3:28:1069:3:119:-1.76346,0,-87.1762 0|1:64:39,25:39:1534:25:988:-69.9564,0,-119.051 dDocent_Contig_36 117 . C G 1770.59 . AB=0.465409;ABP=4.6628;AC=3;AF=0.5;AN=6;AO=74;CIGAR=1X;DP=159;DPB=159;DPRA=0;EPP=163.699;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2550;QR=2983;RO=85;RPL=0;RPP=163.699;RPPR=187.585;RPR=74;RUN=1;SAF=0;SAP=163.699;SAR=74;SRF=0;SRP=187.585;SRR=85;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:68:30,38:30:1053:38:1309:-97.6389,0,-74.6116 0/1:45:26,19:26:909:19:647:-45.0023,0,-68.5796 0/1:46:29,17:29:1021:17:594:-39.9403,0,-78.3554 dDocent_Contig_37 39 . T A 835.258 . AB=0.508197;ABP=3.0459;AC=2;AF=0.333333;AN=6;AO=34;CIGAR=1X;DP=99;DPB=99;DPRA=0;EPP=76.8404;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1285;QR=2591;RO=65;RPL=0;RPP=76.8404;RPPR=144.156;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:21,16:21:828:16:580:-41.3788,0,-63.699 0/1:24:9,15:9:348:15:584:-45.6689,0,-24.4491 0/0:38:35,3:35:1415:3:121:0,-0.158943,-116.32 dDocent_Contig_38 133 . A T 396.314 . AB=0.223404;ABP=65.4748;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X;DP=94;DPB=94;DPRA=0;EPP=48.6112;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=804;QR=2760;RO=73;RPL=0;RPP=48.6112;RPPR=161.528;RPR=21;RUN=1;SAF=0;SAP=48.6112;SAR=21;SRF=0;SRP=161.528;SRR=73;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:27,8:27:1028:8:304:-17.1834,0,-82.2912 0/1:29:23,6:23:851:6:234:-12.7012,0,-68.1708 0/1:30:23,7:23:881:7:266:-15.2696,0,-70.5775 dDocent_Contig_39 9 . G C 157.077 . AB=0.28;ABP=13.5202;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=56;DPB=56;DPRA=1.6129;EPP=18.2106;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=271;QR=1864;RO=49;RPL=0;RPP=18.2106;RPPR=109.412;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:18,7:18:698:7:271:-17.2306,0,-55.6286 0/0:18:18,0:18:685:0:0:0,-5.41854,-61.9831 0/0:13:13,0:13:481:0:0:0,-3.91339,-43.6256 dDocent_Contig_40 76 . C A 427.952 . AB=0.387755;ABP=8.37251;AC=2;AF=0.333333;AN=6;AO=19;CIGAR=1X;DP=60;DPB=60;DPRA=2.22727;EPP=44.2683;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=659;QR=1396;RO=41;RPL=19;RPP=44.2683;RPPR=92.0407;RPR=0;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:13,17:13:445:17:589:-44.306,0,-31.3472 0/0:11:11,0:11:380:0:0:0,-3.31133,-34.5329 0/1:19:17,2:17:571:2:70:-0.927826,0,-45.9893 dDocent_Contig_41 18 . C A 195.412 . AB=0.16;ABP=78.317;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1X;DP=250;DPB=250;DPRA=1.39394;EPP=35.5824;EPPR=513.306;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.995745;PAO=0;PQA=0;PQR=0;PRO=0;QA=604;QR=9385;RO=235;RPL=0;RPP=35.5824;RPPR=513.306;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=235;SRP=513.306;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:75:63,12:63:2528:12:481:-21.0641,0,-205.083 0/0:66:66,0:66:2656:0:0:0,-19.868,-239.159 0/0:109:106,3:106:4201:3:123:0,-21.3475,-366.58 dDocent_Contig_42 10 . G C 45.6146 . AB=0.0831721;ABP=783.233;AC=1;AF=0.166667;AN=6;AO=120;CIGAR=1X;DP=1871;DPB=1871;DPRA=0;EPP=263.587;EPPR=3573.1;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=59.9832;NS=3;NUMALT=1;ODDS=0;PAIRED=0.975;PAIREDR=0.969424;PAO=0;PQA=0;PQR=0;PRO=0;QA=4795;QR=65452;RO=1668;RPL=0;RPP=263.587;RPPR=3625.03;RPR=120;RUN=1;SAF=120;SAP=263.587;SAR=0;SRF=1662;SRP=3573.1;SRR=6;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:614:558,32:558:21860:32:1253:0,-64.9525,-1852.5 0/0:740:657,45:657:25650:45:1810:0,-48.6081,-2143.41 0/1:517:453,43:453:17942:43:1732:-6.38536,0,-1463.67 dDocent_Contig_43 106 . N T 101.596 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=2X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=102;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:68:-6.45793,-0.60206,0 .:.:.:.:.:.:.:. 1|1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 dDocent_Contig_44 31 . G C 58.7122 . 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G A 324.051 . AB=0.16;ABP=28.1125;AC=2;AF=0.333334;AN=6;AO=4;CIGAR=1M5I1M1X;DP=87;DPB=110.333;DPRA=0.595238;EPP=11.6962;EPPR=159.356;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=2849;RO=72;RPL=0;RPP=11.6962;RPPR=159.356;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:42:42,0,0:42:1657:0,0:0,0:0,-12.6433,-149.371,-12.6433,-149.371,-149.371 0|1:25:20,0,4:20:795:0,4:0,157:-7.12566,-13.1463,-78.6485,0,-65.7345,-64.5304 0|1:20:10,10,0:10:397:10,0:383,0:-28.8023,0,-30.0668,-31.8126,-33.0771,-64.5001 dDocent_Contig_47 21 . G A 658.094 . AB=0.114022;ABP=842.828;AC=3;AF=0.5;AN=6;AO=74;CIGAR=1X;DP=649;DPB=649;DPRA=0;EPP=163.699;EPPR=1251.61;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.756757;PAIREDR=0.827826;PAO=0;PQA=0;PQR=0;PRO=0;QA=2952;QR=22605;RO=575;RPL=0;RPP=163.699;RPPR=1251.61;RPR=74;RUN=1;SAF=74;SAP=163.699;SAR=0;SRF=575;SRP=1251.61;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:256:234,22:234:9147:22:875:-1.99568,0,-745.693 0/1:247:221,26:221:8710:26:1033:-18.9073,0,-709.096 0/1:146:120,26:120:4748:26:1044:-50.3011,0,-383.285 dDocent_Contig_49 131 . C G 743.499 . AB=0.255034;ABP=80.6732;AC=3;AF=0.5;AN=6;AO=38;CIGAR=1X;DP=149;DPB=149;DPRA=0;EPP=85.5263;EPPR=241.872;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1373;QR=4086;RO=110;RPL=0;RPP=85.5263;RPPR=241.872;RPR=38;RUN=1;SAF=0;SAP=85.5263;SAR=38;SRF=0;SRP=241.872;SRR=110;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:73:60,13:60:2256:13:470:-20.6583,0,-181.288 0/1:27:24,3:24:873:3:108:-1.94712,0,-70.748 0/1:49:26,22:26:957:22:795:-57.1021,0,-71.6671 dDocent_Contig_50 62 . A G 64.2078 . AB=0.172414;ABP=30.0414;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=37;DPB=37;DPRA=1.8125;EPP=13.8677;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=1241;RO=31;RPL=5;RPP=13.8677;RPPR=70.3259;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:12,2:12:479:2:76:-3.00039,0,-39.2479 0/1:15:11,3:11:439:3:122:-6.92903,0,-35.4601 0/0:8:8,0:8:323:0:0:0,-2.40824,-29.4392 dDocent_Contig_51 39 . C A 110.223 . AB=0.318182;ABP=9.32731;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=38;DPB=38;DPRA=0.6875;EPP=18.2106;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=228;QR=1065;RO=31;RPL=0;RPP=18.2106;RPPR=70.3259;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:543:0:0:0,-4.81648,-49.1933 0/1:11:8,3:8:278:3:101:-6.11244,0,-22.0466 0/1:11:7,4:7:244:4:127:-8.43273,0,-18.9887 dDocent_Contig_52 109 . G T 218.322 . AB=0.642857;ABP=5.49198;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=47;DPB=47;DPRA=0.848485;EPP=22.5536;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=306;QR=1271;RO=38;RPL=0;RPP=22.5536;RPPR=85.5263;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=85.5263;SRR=38;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:501:0:0:0,-4.51545,-45.4084 0/0:18:18,0:18:597:0:0:0,-5.41854,-54.045 0/1:14:5,9:5:173:9:306:-23.6561,0,-11.6958 dDocent_Contig_53 98 . N T 1007.77 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=38;CIGAR=1X;DP=38;DPB=38;DPRA=0;EPP=85.5263;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1105;QR=0;RO=0;RPL=38;RPP=85.5263;RPPR=0;RPR=0;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:13:0,13:0:0:13:349:-31.6744,-3.91339,0 1/1:10:0,10:0:0:10:288:-26.2023,-3.0103,0 1/1:15:0,15:0:0:15:468:-42.4227,-4.51545,0 dDocent_Contig_55 107 . N C 96.7539 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=97;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0 1/1:2:0,2:0:0:2:65:-6.17329,-0.60206,0 dDocent_Contig_57 114 . G A 259.07 . AB=0.271186;ABP=29.8409;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=59;DPB=59;DPRA=0;EPP=37.7539;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=532;QR=1472;RO=43;RPL=0;RPP=37.7539;RPPR=96.3836;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=96.3836;SRR=43;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:12,5:12:419:5:150:-8.67744,0,-32.9264 0/1:16:14,2:14:475:2:69:-1.73618,0,-38.2583 0/1:26:17,9:17:578:9:313:-20.68,0,-44.513 dDocent_Contig_58 127 . A C 524.597 . AB=0.46;ABP=3.70517;AC=2;AF=0.333333;AN=6;AO=23;CIGAR=1X;DP=82;DPB=82;DPRA=0.78125;EPP=52.9542;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=782;QR=1974;RO=59;RPL=0;RPP=52.9542;RPPR=131.127;RPR=23;RUN=1;SAF=0;SAP=52.9542;SAR=23;SRF=0;SRP=131.127;SRR=59;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:32,0:32:1083:0:0:0,-9.63296,-97.7707 0/1:19:10,9:10:319:9:302:-21.7866,0,-23.2988 0/1:31:17,14:17:572:14:480:-34.1959,0,-42.4638 dDocent_Contig_59 30 . C T 1164.18 . AB=0.179775;ABP=82.2812;AC=0;AF=0;AN=6;AO=16;CIGAR=1X1M1D4M1X1M;DP=89;DPB=87.2222;DPRA=0;EPP=37.7539;EPPR=70.3259;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=625;QR=1176;RO=31;RPL=0;RPP=37.7539;RPPR=70.3259;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:47:12,7,27:12:465:7,27:276,1075:-84.9074,-65.8129,-101.904,0,-15.4894,-30.072 0|0:24:10,5,8:10:370:5,8:191,325:-23.8081,-11.1553,-39.8973,0,-14.5826,-27.8486 0|0:18:9,4,5:9:341:4,5:158,194:-13.2248,-2.92926,-29.6726,0,-14.9355,-26.437 dDocent_Contig_63 99 . N A 22454.5 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=752;CIGAR=1X;DP=753;DPB=753;DPRA=0;EPP=1635.96;EPPR=0;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.9854;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.985372;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=24945;QR=0;RO=0;RPL=752;RPP=1635.96;RPPR=0;RPR=0;RUN=1;SAF=752;SAP=1635.96;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:240:0,240:0:0:240:7984:-718.652,-72.2472,0 1/1:257:0,256:0:0:256:8427:-758.178,-77.0637,0 1/1:256:0,256:0:0:256:8534:-768.139,-77.0637,0 dDocent_Contig_67 10 . C T 323.611 . AB=0.428571;ABP=4.25114;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=51;DPB=51;DPRA=0.608696;EPP=29.068;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=484;QR=1551;RO=39;RPL=0;RPP=29.068;RPPR=87.6977;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:10,8:10:401:8:324:-24.1109,0,-31.031 0/1:10:6,4:6:228:4:160:-11.7731,0,-17.8698 0/0:23:23,0:23:922:0:0:0,-6.92369,-83.2845 dDocent_Contig_69 68 . G A 50.8041 . AB=0.230769;ABP=11.1951;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=39;DPB=39;DPRA=1;EPP=9.52472;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=1354;RO=36;RPL=3;RPP=9.52472;RPPR=81.1833;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:594:0:0:0,-4.81648,-53.7951 0/0:10:10,0:10:387:0:0:0,-3.0103,-35.1875 0/1:13:10,3:10:373:3:116:-6.90431,0,-30.0054 dDocent_Contig_70 1 . N G 112.807 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:121:-11.2802,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_71 16 . T C 257.364 . AB=0.266667;ABP=24.2907;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=45;DPB=45;DPRA=0;EPP=29.068;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=485;QR=1319;RO=33;RPL=0;RPP=29.068;RPPR=74.6689;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:10,2:10:400:2:79:-3.88488,0,-32.7468 0/1:18:11,7:11:443:7:284:-20.5155,0,-34.8075 0/1:15:12,3:12:476:3:122:-6.85704,0,-38.6722 dDocent_Contig_72 37 . A G 3239.38 . AB=0.112903;ABP=83.705;AC=5;AF=0.833334;AN=6;AO=7;CIGAR=2X4M;DP=127;DPB=127;DPRA=1.58974;EPP=18.2106;EPPR=33.4109;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=260;QR=542;RO=14;RPL=0;RPP=18.2106;RPPR=33.4109;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:62:5,50,7:5:189:50,7:1904,260:-160.458,-5.77983,-6.22256,-140.686,0,-154.07 0|1:26:6,19,0:6:235:19,0:720,0:-57.2069,0,-13.5975,-59.0131,-19.3171,-78.3399 1|1:39:3,35,0:3:118:35,0:1339,0:-109.796,-0.819288,0,-110.699,-10.5361,-120.407 dDocent_Contig_73 98 . N G 441.555 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=19;CIGAR=1X;DP=19;DPB=19;DPRA=0;EPP=44.2683;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=477;QR=0;RO=0;RPL=19;RPP=44.2683;RPPR=0;RPR=0;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:96:-8.87836,-1.20412,0 1/1:10:0,10:0:0:10:245:-22.291,-3.0103,0 1/1:5:0,5:0:0:5:136:-12.5089,-1.50515,0 dDocent_Contig_74 14 . T C 2471.39 . AB=0.59854;ABP=14.5651;AC=3;AF=0.5;AN=6;AO=82;CIGAR=1X;DP=137;DPB=137;DPRA=0;EPP=181.071;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3256;QR=2196;RO=55;RPL=0;RPP=181.071;RPPR=122.441;RPR=82;RUN=1;SAF=82;SAP=181.071;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:63:31,32:31:1228:32:1262:-94.8821,0,-91.8221 0/1:23:7,16:7:283:16:636:-50.6518,0,-18.9197 0/1:51:17,34:17:685:34:1358:-107.128,0,-46.6266 dDocent_Contig_77 32 . C T 246.118 . AB=0.203125;ABP=52.0041;AC=1;AF=0.166667;AN=6;AO=18;CIGAR=1X;DP=217;DPB=217;DPRA=0;EPP=10.7311;EPPR=285.858;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8794;NS=3;NUMALT=1;ODDS=0;PAIRED=0.111111;PAIREDR=0.854271;PAO=0;PQA=0;PQR=0;PRO=0;QA=704;QR=7763;RO=199;RPL=4;RPP=15.074;RPPR=435.133;RPR=14;RUN=1;SAF=13;SAP=10.7311;SAR=5;SRF=180;SRP=285.858;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:68:65,3:65:2508:3:121:0,-9.19005,-214.556 0/1:64:51,13:51:2008:13:504:-26.4357,0,-161.654 0/0:85:83,2:83:3247:2:79:0,-18.0899,-284.806 dDocent_Contig_78 39 . C T 368.562 . AB=0.205882;ABP=79.6505;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X;DP=102;DPB=102;DPRA=0;EPP=48.6112;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=800;QR=3058;RO=81;RPL=0;RPP=48.6112;RPPR=178.9;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:52,7:52:1934:7:273:-7.17691,0,-156.545 0/1:21:12,9:12:467:9:339:-24.5428,0,-36.0592 0/1:22:17,5:17:657:5:188:-10.6594,0,-52.8422 dDocent_Contig_79 46 . A G 200.727 . AB=0.588235;ABP=4.1599;AC=4;AF=0.666667;AN=6;AO=12;CIGAR=3M1X1M2X;DP=20;DPB=16.5714;DPRA=0;EPP=29.068;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=18;MQMR=0;NS=3;NUMALT=2;ODDS=8.67362e-19;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=472;QR=0;RO=0;RPL=0;RPP=29.068;RPPR=0;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:10:0,7,3:0:0:7,3:274,42:-11.4576,-2.19848,-0.0912656,-9.39059,0,-8.4875 1|1:3:0,2,1:0:0:2,1:78,8:-3.31803,-0.60206,0,-3.17978,-0.368264,-2.87875 1|0:7:0,3,4:0:0:3,4:120,44:-5.82591,-1.83456,-0.931466,-4.12925,0,-2.92513 dDocent_Contig_80 6 . C G 143.029 . AB=0.129213;ABP=215.571;AC=2;AF=0.333333;AN=6;AO=28;CIGAR=1X;DP=268;DPB=268;DPRA=0;EPP=63.8115;EPPR=234.634;GTI=0;LEN=1;MEANALT=1;MQM=40.3929;MQMR=37.2292;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.608333;PAO=0;PQA=0;PQR=0;PRO=0;QA=1016;QR=9170;RO=240;RPL=0;RPP=63.8115;RPPR=524.164;RPR=28;RUN=1;SAF=0;SAP=63.8115;SAR=28;SRF=200;SRP=234.634;SRR=40;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:90:85,5:85:3254:5:184:0,-10.5955,-200.463 0/1:85:72,13:72:2705:13:481:-15.6283,0,-144.736 0/1:93:83,10:83:3211:10:351:-2.09436,0,-190.012 dDocent_Contig_81 17 . C T 1241.74 . AB=0.0591716;ABP=573.529;AC=0;AF=0;AN=6;AO=20;CIGAR=1X3M1X;DP=338;DPB=338;DPRA=0;EPP=46.4397;EPPR=548.05;GTI=0;LEN=1;MEANALT=3.33333;MQM=17.25;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.992032;PAO=0;PQA=0;PQR=0;PRO=0;QA=786;QR=9876;RO=251;RPL=0;RPP=46.4397;RPPR=548.05;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=251;SRP=548.05;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:73:37,11,24:37:1437:11,24:425,970:-68.9901,-68.6924,-183.443,0,-106.778,-111.013 0|0:153:126,1,25:126:4940:1,25:40,989:-43.4502,-78.0848,-484.013,0,-402.925,-398.694 0|0:112:88,8,13:88:3499:8,13:321,529:-17.2563,-35.4463,-321.118,0,-279.887,-284.337 dDocent_Contig_83 18 . T G 39869.6 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=1158;CIGAR=1M1I2M1X3M;DP=1361;DPB=1557.57;DPRA=0;EPP=2517.58;EPPR=57.2971;GTI=0;LEN=1;MEANALT=11;MQM=59.1339;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.988774;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=45397;QR=982;RO=25;RPL=0;RPP=2517.58;RPPR=57.2971;RPR=1158;RUN=1;SAF=1158;SAP=2517.58;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:491:5,23,427:5:192:23,427:913,16690:-1478.52,-1404.87,-1413.7,-112.779,-53.3742,0 1|1:335:7,20,281:7:270:20,281:793,11014:-965.516,-905.817,-921.966,-62.4193,-22.7873,0 1|1:535:13,36,450:13:520:36,450:1424,17693:-1542.45,-1429.21,-1461.21,-92.6266,-18.3075,0 dDocent_Contig_84 7 . T C 15101.2 . AB=0.611684;ABP=97.5925;AC=3;AF=0.5;AN=6;AO=534;CIGAR=2X;DP=873;DPB=882;DPRA=0;EPP=1162.58;EPPR=702.224;GTI=0;LEN=1;MEANALT=2.66667;MQM=55.4925;MQMR=59.795;NS=3;NUMALT=1;ODDS=0;PAIRED=0.945693;PAIREDR=0.925466;PAO=0;PQA=0;PQR=0;PRO=0;QA=20381;QR=12210;RO=322;RPL=0;RPP=1162.58;RPPR=702.224;RPR=534;RUN=1;SAF=534;SAP=1162.58;SAR=0;SRF=322;SRP=702.224;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:307:104,197:104:3916:197:7472:-565.056,0,-260.884 0|1:325:133,182:133:5039:182:6926:-514.426,0,-358.344 0|1:241:85,155:85:3255:155:5983:-436.159,0,-220.528 dDocent_Contig_85 6 . C A 122.911 . AB=0.141176;ABP=98.0697;AC=1;AF=0.166667;AN=6;AO=21;CIGAR=2X;DP=285;DPB=285;DPRA=0;EPP=48.6112;EPPR=567.593;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.996154;PAO=0;PQA=0;PQR=0;PRO=0;QA=762;QR=9907;RO=260;RPL=0;RPP=48.6112;RPPR=567.593;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=260;SRP=567.593;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:85:73,12:73:2783:12:434:-13.814,0,-225.072 0|0:97:91,2:91:3479:2:74:0,-21.3447,-306.215 0|0:103:96,7:96:3645:7:254:0,-7.79517,-304.96 dDocent_Contig_86 17 . A G 2106.13 . AB=0.426966;ABP=11.257;AC=3;AF=0.5;AN=6;AO=76;CIGAR=1X;DP=178;DPB=178;DPRA=0;EPP=168.042;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.970588;PAO=0;PQA=0;PQR=0;PRO=0;QA=2987;QR=4052;RO=102;RPL=0;RPP=168.042;RPPR=224.5;RPR=76;RUN=1;SAF=76;SAP=168.042;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:28,17:28:1124:17:656:-45.8216,0,-87.8982 0/1:52:31,21:31:1218:21:830:-59.3591,0,-94.2393 0/1:81:43,38:43:1710:38:1501:-110.955,0,-129.736 dDocent_Contig_87 18 . C T 57.0536 . AB=0.122807;ABP=73.4498;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=128;DPB=128;DPRA=2.40909;EPP=20.3821;EPPR=263.587;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=308;QR=4736;RO=120;RPL=0;RPP=20.3821;RPPR=263.587;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:50,7:50:1976:7:267:-7.22824,0,-160.875 0/0:22:22,0:22:853:0:0:0,-6.62266,-77.0814 0/0:49:48,1:48:1907:1:41:0,-10.6559,-167.741 dDocent_Contig_88 56 . A G 57.0877 . 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T A 1359.72 . AB=0.484848;ABP=3.20771;AC=3;AF=0.5;AN=6;AO=48;CIGAR=1X;DP=99;DPB=99;DPRA=0;EPP=107.241;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1892;QR=2018;RO=51;RPL=0;RPP=107.241;RPPR=113.755;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:60:23,37:23:916:37:1453:-112.97,0,-64.6823 0/1:23:19,4:19:752:4:160:-7.85974,0,-61.0768 0/1:16:9,7:9:350:7:279:-20.6647,0,-27.0347 dDocent_Contig_96 14 . G A 189.927 . AB=0.186441;ABP=53.3958;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=117;DPB=117;DPRA=0.508621;EPP=26.8965;EPPR=231.015;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=439;QR=4132;RO=105;RPL=0;RPP=26.8965;RPPR=231.015;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:58:57,0:57:2241:0:0:0,-17.1587,-201.465 0/1:27:24,3:24:942:3:121:-3.15218,0,-76.9596 0/1:32:24,8:24:949:8:318:-19.3534,0,-76.0772 dDocent_Contig_97 1 . N A 464.302 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=14;CIGAR=1X;DP=14;DPB=14;DPRA=0;EPP=8.59409;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=59.4286;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.642857;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=499;QR=0;RO=0;RPL=0;RPP=33.4109;RPPR=0;RPR=14;RUN=1;SAF=10;SAP=8.59409;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:177:-16.2722,-1.50515,0 1/1:6:0,6:0:0:6:215:-19.6985,-1.80618,0 1/1:3:0,3:0:0:3:107:-9.98208,-0.90309,0 dDocent_Contig_98 122 . A C 575.952 . AB=0.322222;ABP=27.7168;AC=2;AF=0.333333;AN=6;AO=30;CIGAR=1X;DP=150;DPB=150;DPRA=0;EPP=68.1545;EPPR=263.587;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1008;QR=4140;RO=120;RPL=0;RPP=68.1545;RPPR=263.587;RPR=30;RUN=1;SAF=0;SAP=68.1545;SAR=30;SRF=0;SRP=263.587;SRR=120;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:40,14:40:1387:14:479:-27.181,0,-108.874 0/1:36:21,15:21:719:15:494:-33.937,0,-54.1914 0/0:60:59,1:59:2034:1:35:0,-14.5632,-179.836 dDocent_Contig_99 31 . T C 49.3328 . AB=0.166667;ABP=26.1727;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=70;DPB=70;DPRA=1.04348;EPP=11.6962;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=148;QR=2647;RO=66;RPL=0;RPP=11.6962;RPPR=146.327;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:20,4:20:794:4:148:-6.45615,0,-64.5519 0/0:27:27,0:27:1090:0:0:0,-8.12781,-98.3869 0/0:19:19,0:19:763:0:0:0,-5.71957,-68.9868 dDocent_Contig_100 20 . G C 782.183 . AB=0.319588;ABP=30.4335;AC=3;AF=0.5;AN=6;AO=31;CIGAR=1X;DP=97;DPB=97;DPRA=0;EPP=70.3259;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1243;QR=2638;RO=66;RPL=0;RPP=70.3259;RPPR=146.327;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:13,8:13:514:8:320:-22.8452,0,-40.2789 0/1:21:18,3:18:718:3:120:-4.86606,0,-58.624 0/1:55:35,20:35:1406:20:803:-56.0297,0,-110.235 dDocent_Contig_101 95 . C A 5030.98 . AB=0.801527;ABP=106.462;AC=4;AF=0.666667;AN=6;AO=177;CIGAR=1X;DP=204;DPB=204;DPRA=0;EPP=387.361;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6097;QR=914;RO=27;RPL=177;RPP=387.361;RPPR=61.6401;RPR=0;RUN=1;SAF=177;SAP=387.361;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:13,37:13:450:37:1235:-96.3926,0,-25.7796 0/1:81:13,68:13:429:68:2359:-188.195,0,-14.5438 1/1:73:1,72:1:35:72:2503:-222.034,-18.4766,0 dDocent_Contig_105 107 . N C 61.7453 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=65;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:65:-6.17345,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_106 37 . A T 58.4984 . AB=0.2;ABP=22.5536;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=113;DPB=113;DPRA=0.568182;EPP=13.8677;EPPR=237.529;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.990741;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=4218;RO=108;RPL=0;RPP=13.8677;RPPR=237.529;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:20,5:20:797:5:162:-7.37272,0,-64.5226 0/0:25:25,0:25:972:0:0:0,-7.52575,-87.78 0/0:63:63,0:63:2449:0:0:0,-18.9649,-220.558 dDocent_Contig_107 7 . T C 14262.9 . AB=0.103169;ABP=3715.25;AC=0;AF=0;AN=6;AO=280;CIGAR=1X3M;DP=2714;DPB=2714;DPRA=0;EPP=611.023;EPPR=2910.84;GTI=0;LEN=1;MEANALT=10.3333;MQM=59.7321;MQMR=59.0492;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.969186;PAO=0;PQA=0;PQR=0;PRO=0;QA=10670;QR=51804;RO=1363;RPL=0;RPP=611.023;RPPR=2962.73;RPR=280;RUN=1;SAF=280;SAP=611.023;SAR=0;SRF=1357;SRP=2910.84;SRR=6;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:708:292,93,100,166:292:11068:93,100,166:3493,3812,6562:-432.713,-246.822,-1113.06,-207.947,-828.39,-1072.08,0,-620.445,-581.572,-844.268 0|0:893:447,136,68,211:447:16953:136,68,211:5172,2571,8358:-538.127,-267.713,-1596.18,-462.003,-1426.44,-1810.95,0,-964.442,-1158.74,-1305.9 0|0:1113:624,128,112,210:624:23783:128,112,210:4912,4287,8332:-460.975,-258.837,-2166.39,-297.064,-1853.17,-2209.43,0,-1556.1,-1594.33,-1882.87 dDocent_Contig_108 58 . G A 68.6084 . AB=0.222222;ABP=15.074;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=51;DPB=51;DPRA=1.09091;EPP=11.6962;EPPR=102.898;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=148;QR=1790;RO=46;RPL=4;RPP=11.6962;RPPR=102.898;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:13,4:13:523:4:148:-8.38372,0,-42.1512 0/0:19:19,0:19:697:0:0:0,-5.71957,-63.0289 0/0:14:14,0:14:570:0:0:0,-4.21442,-51.6422 dDocent_Contig_109 123 . T A 1703.17 . AB=0.75;ABP=48.6112;AC=3;AF=0.5;AN=6;AO=63;CIGAR=1X;DP=84;DPB=84;DPRA=0;EPP=139.813;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2214;QR=699;RO=21;RPL=0;RPP=139.813;RPPR=48.6112;RPR=63;RUN=1;SAF=0;SAP=139.813;SAR=63;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:7,8:7:237:8:276:-20.6587,0,-17.1458 0/1:34:10,24:10:336:24:851:-66.6762,0,-20.3307 0/1:35:4,31:4:126:31:1087:-87.602,0,-1.11578 dDocent_Contig_110 98 . N G 1975.83 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=91;CIGAR=1X;DP=91;DPB=91;DPRA=0;EPP=200.614;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=58.8791;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2183;QR=0;RO=0;RPL=91;RPP=200.614;RPPR=0;RPR=0;RUN=1;SAF=91;SAP=200.614;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:31:0,31:0:0:31:794:-71.6855,-9.33193,0 1/1:44:0,44:0:0:44:1065:-96.0631,-13.2453,0 1/1:16:0,16:0:0:16:324:-29.3578,-4.81648,0 dDocent_Contig_111 29 . A G 560.461 . AB=0.324675;ABP=23.5688;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=77;DPB=77;DPRA=0;EPP=57.2971;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=59.8;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=930;QR=1951;RO=52;RPL=0;RPP=57.2971;RPPR=115.927;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:11,11:11:410:11:421:-31.6197,0,-30.6235 0/1:23:15,8:15:563:8:288:-19.3408,0,-44.0864 0/1:32:26,6:26:978:6:221:-10.6084,0,-78.6934 dDocent_Contig_112 84 . A T 107.959 . AB=0.272727;ABP=12.8806;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=69;DPB=69;DPRA=0.689655;EPP=18.2106;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=2128;RO=62;RPL=7;RPP=18.2106;RPPR=137.642;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:29,0:29:1001:0:0:0,-8.72987,-90.402 0/1:22:16,6:16:542:6:210:-12.6198,0,-42.479 0/0:18:17,1:17:585:1:35:0,-1.91991,-49.4765 dDocent_Contig_113 20 . A G 6266.68 . AB=0.0761421;ABP=310.422;AC=0;AF=0;AN=6;AO=15;CIGAR=1M1X2M1X;DP=277;DPB=440.6;DPRA=0;EPP=35.5824;EPPR=46.4397;GTI=0;LEN=1;MEANALT=4.5;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=590;QR=797;RO=20;RPL=0;RPP=35.5824;RPPR=46.4397;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:104:1,6,11,29,57:1:40:6,11,29,57:227,432,1119,2272:-275.386,-257.08,-258.568,-240.156,-224.843,-240.14,-183.8,-168.488,-151.564,-178.365,-88.5935,-73.2814,-56.3555,0,-74.7301 0|0:80:10,7,0,16,46:10:397:7,0,16,46:274,0,610,1830:-165.015,-145.496,-176.071,-168.026,-178.178,-200.708,-117.989,-128.141,-150.671,-145.854,-17.349,-27.5033,-50.0341,0,-36.1867 0|0:93:9,11,4,33,35:9:360:11,4,33,35:422,158,1302,1419:-191.789,-159.864,-186.208,-181.496,-176.518,-209.947,-87.3691,-82.3921,-104.023,-107.09,-77.4761,-72.499,-94.1304,0,-96.5964 dDocent_Contig_115 4 . T A 87.7381 . AB=0.157895;ABP=60.9543;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=170;DPB=170;DPRA=1.00885;EPP=22.5536;EPPR=352.617;GTI=0;LEN=1;MEANALT=1;MQM=52;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.987578;PAO=0;PQA=0;PQR=0;PRO=0;QA=307;QR=5883;RO=161;RPL=0;RPP=22.5536;RPPR=352.617;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=161;SRP=352.617;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:86:86,0:86:3144:0:0:0,-25.8886,-283.17 0/0:27:27,0:27:982:0:0:0,-8.12781,-88.6967 0/1:57:48,9:48:1757:9:307:-10.5977,0,-141.25 dDocent_Contig_116 19 . T A 110.506 . AB=0.112903;ABP=83.705;AC=0;AF=0;AN=6;AO=7;CIGAR=1X6M;DP=62;DPB=62;DPRA=0;EPP=3.32051;EPPR=6.8707;GTI=0;LEN=1;MEANALT=3;MQM=14.4286;MQMR=55.1389;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0.611111;PAO=0;PQA=0;PQR=0;PRO=0;QA=101;QR=1298;RO=36;RPL=0;RPP=18.2106;RPPR=81.1833;RPR=7;RUN=1;SAF=3;SAP=3.32051;SAR=4;SRF=22;SRP=6.8707;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:11:5,0,2,0,4:5:161:0,2,0,4:0,71,0,55:-4.32461,-5.82976,-18.8671,0,-13.0956,-12.4935,-5.82976,-18.8671,-13.0956,-18.8671,-3.24336,-16.199,-10.4414,-16.199,-14.9949 0|0:21:11,4,2,2,2:11:383:4,2,2,2:74,75,68,23:-2.86959,-1.84172,-31.8301,0,-26.884,-30.6328,-0.635544,-27.5155,-25.7118,-31.2633,-5.2588,-32.1092,-30.3015,-30.9324,-35.8499 0|0:30:20,4,5,0,1:20:754:4,5,0,1:28,186,0,23:-9.32671,-15.0701,-70.5221,0,-56.521,-55.3648,-15.3473,-71.7263,-56.87,-72.0824,-13.8509,-70.2331,-55.3749,-70.5871,-70.286 dDocent_Contig_117 62 . A C 238.232 . AB=0.261905;ABP=23.691;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=81;DPB=81;DPRA=0.538462;EPP=26.8965;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=436;QR=2758;RO=70;RPL=11;RPP=26.8965;RPPR=155.013;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:39,0:39:1529:0:0:0,-11.7402,-137.863 0/1:25:18,7:18:719:7:278:-17.8639,0,-57.5112 0/1:17:13,4:13:510:4:158:-9.48225,0,-41.1265 dDocent_Contig_118 55 . G T 250.296 . AB=0.275;ABP=20.5992;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=105;DPB=105;DPRA=1.23077;EPP=26.8965;EPPR=207.129;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=425;QR=3758;RO=94;RPL=11;RPP=26.8965;RPPR=207.129;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:29,11:29:1142:11:425:-26.5525,0,-91.0235 0/0:28:28,0:28:1116:0:0:0,-8.42884,-100.727 0/0:37:37,0:37:1500:0:0:0,-11.1381,-135.24 dDocent_Contig_121 153 . G A 84.0031 . AB=0.178571;ABP=28.1373;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=131;DPB=131;DPRA=0.836735;EPP=16.0391;EPPR=274.444;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=209;QR=4643;RO=125;RPL=0;RPP=16.0391;RPPR=274.444;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=274.444;SRR=125;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:54:53,1:53:1944:1:6:0,-15.6556,-174.603 0/1:28:23,5:23:868:5:203:-10.2242,0,-70.0106 0/0:49:49,0:49:1831:0:0:0,-14.7505,-165.03 dDocent_Contig_122 12 . G C 45.8105 . AB=0.112676;ABP=95.5273;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=85;DPB=85;DPRA=2.53571;EPP=20.3821;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=317;QR=2984;RO=77;RPL=0;RPP=20.3821;RPPR=170.214;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:39,4:39:1506:4:157:-1.56339,0,-122.852 0/0:14:14,0:14:534:0:0:0,-4.21442,-48.3859 0/1:28:24,4:24:944:4:160:-6.35496,0,-76.8358 dDocent_Contig_123 98 . N A 63.6413 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=67;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:67:-6.36304,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_124 73 . T C 359.224 . AB=0.167742;ABP=151.637;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X;DP=155;DPB=155;DPRA=0;EPP=59.4686;EPPR=283.13;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=967;QR=4929;RO=129;RPL=26;RPP=59.4686;RPPR=283.13;RPR=0;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=129;SRP=283.13;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:68:54,14:54:2069:14:511:-25.8526,0,-165.97 0/1:25:22,3:22:835:3:111:-2.82703,0,-67.9441 0/1:62:53,9:53:2025:9:345:-12.7447,0,-163.824 dDocent_Contig_125 63 . T G 1288.48 . AB=0.68254;ABP=21.2438;AC=3;AF=0.5;AN=6;AO=43;CIGAR=1X;DP=63;DPB=63;DPRA=0;EPP=96.3836;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1691;QR=695;RO=18;RPL=43;RPP=96.3836;RPPR=42.0968;RPR=0;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:7,8:7:269:8:318:-24.0807,0,-19.6691 0/1:24:5,18:5:192:18:717:-57.8369,0,-10.5944 0/1:23:6,17:6:234:17:656:-52.4533,0,-14.5074 dDocent_Contig_126 16 . C A 209.315 . AB=0.363636;ABP=6.56362;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=55;DPB=55;DPRA=1.33333;EPP=20.3821;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=319;QR=1882;RO=47;RPL=0;RPP=20.3821;RPPR=105.07;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:14,8:14:553:8:319:-22.4544,0,-43.4898 0/0:17:17,0:17:679:0:0:0,-5.11751,-61.4407 0/0:16:16,0:16:650:0:0:0,-4.81648,-58.8333 dDocent_Contig_127 39 . A G 143.277 . AB=0.222222;ABP=27.1378;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=121;DPB=121;DPRA=1.13514;EPP=22.5536;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=336;QR=4370;RO=112;RPL=0;RPP=22.5536;RPPR=246.215;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:37,0:37:1426:0:0:0,-11.1381,-128.604 0/1:36:28,8:28:1078:8:296:-16.1516,0,-86.4767 0/0:48:47,1:47:1866:1:40:0,-10.4538,-164.161 dDocent_Contig_128 149 . G A 81.0822 . AB=0.121212;ABP=85.263;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=239;DPB=239;DPRA=0.763006;EPP=20.3821;EPPR=504.62;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.852814;PAO=0;PQA=0;PQR=0;PRO=0;QA=327;QR=9002;RO=231;RPL=0;RPP=20.3821;RPPR=504.62;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=504.62;SRR=231;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:85:85,0:85:3317:0:0:0,-25.5875,-298.605 0/0:88:88,0:88:3363:0:0:0,-26.4906,-302.738 0/1:66:58,8:58:2322:8:327:-9.93213,0,-189.266 dDocent_Contig_129 48 . G A 409.754 . AB=0.354167;ABP=11.8771;AC=2;AF=0.333333;AN=6;AO=21;CIGAR=1X;DP=113;DPB=113;DPRA=0;EPP=48.6112;EPPR=202.786;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=799;QR=3555;RO=92;RPL=0;RPP=48.6112;RPPR=202.786;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:5,13:5:201:13:488:-38.8368,0,-13.0524 0/1:30:26,4:26:1011:4:159:-5.66143,0,-82.2542 0/0:65:61,4:61:2343:4:152:0,-5.51979,-196.988 dDocent_Contig_130 31 . C T 53.5827 . AB=0.230769;ABP=11.1951;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=36;DPB=36;DPRA=1.75;EPP=11.6962;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=1263;RO=32;RPL=0;RPP=11.6962;RPPR=72.4974;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:14,1:14:555:1:41:0,-0.420883,-46.1986 0/0:8:8,0:8:310:0:0:0,-2.40824,-28.2612 0/1:13:10,3:10:398:3:119:-7.18162,0,-32.2651 dDocent_Contig_131 12 . G A 164.49 . AB=0.0791367;ABP=216.861;AC=0;AF=0;AN=6;AO=13;CIGAR=2X1M;DP=222;DPB=222;DPRA=0;EPP=31.2394;EPPR=357.012;GTI=0;LEN=1;MEANALT=4;MQM=21.7692;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=0.479042;PAO=0;PQA=0;PQR=0;PRO=0;QA=283;QR=6420;RO=167;RPL=0;RPP=31.2394;RPPR=365.646;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=166;SRP=357.012;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:83:76,0,2,4,1,0:76:2903:0,2,4,1,0:0,46,126,37,0:0,-22.8783,-261.152,-19.9094,-258.159,-257.556,-13.5674,-251.87,-248.877,-250.666,-20.0658,-258.352,-255.358,-249.07,-258.051,-22.8783,-261.152,-258.159,-251.87,-258.352,-261.152 0|0:55:37,3,2,7,3,3:37:1413:3,2,7,3,3:120,26,241,93,66:-6.57296,-8.37211,-123.479,-16.517,-123.176,-131.894,0,-106.7,-114.816,-113.913,-10.8539,-117.531,-125.645,-109.17,-125.948,-13.5004,-120.164,-128.278,-111.804,-122.633,-128.581 0|0:84:54,3,9,12,6,0:54:2104:3,9,12,6,0:121,211,403,182,0:-13.3989,-20.6053,-192.703,-15.8348,-179.773,-186.103,0,-163.98,-159.19,-169.407,-16.7049,-180.662,-175.87,-160.076,-187.895,-29.6545,-193.606,-188.812,-173.019,-189.701,-202.646 dDocent_Contig_132 99 . N T 64.5896 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=8X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:68:-6.45788,-0.60206,0 .:.:.:.:.:.:.:. dDocent_Contig_135 4 . T A 561.272 . AB=0.647059;ABP=6.20364;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X13I2M1X1M;DP=21;DPB=76.8;DPRA=2.125;EPP=26.8965;EPPR=0;GTI=0;LEN=1;MEANALT=2.5;MQM=51.6364;MQMR=0;NS=3;NUMALT=2;ODDS=0;PAIRED=0.636364;PAIREDR=0;PAO=2;PQA=74;PQR=0;PRO=0;QA=401;QR=0;RO=0;RPL=0;RPP=26.8965;RPPR=0;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:8:0,4,3:0:0:4,3:144,103:-19.1817,-8.35022,-7.1461,-10.8226,0,-9.91951 1|0:9:0,7,2:0:0:7,2:257,71:-27.1589,-6.13958,-4.03237,-21.3769,0,-20.7748 0|0:4:0,0,4:0:0:0,4:0,148:-13.3079,-13.3079,-13.3079,-1.20412,-1.20412,0 dDocent_Contig_145 36 . G A 58.3926 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=2X3M2D3M1I2M;DP=5;DPB=4.58333;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=19;MQMR=0;NS=1;NUMALT=2;ODDS=6.4591;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:5:0,4,1:0:0:4,1:76,7:-5.8383,-1.20412,0,-5.52737,-0.805152,-5.22634 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_152 9 . G A 2143.37 . AB=0.0540541;ABP=66.922;AC=0;AF=0;AN=6;AO=2;CIGAR=2X1M1X2M1X;DP=120;DPB=120;DPRA=0;EPP=7.35324;EPPR=98.5551;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=1691;RO=44;RPL=0;RPP=7.35324;RPPR=98.5551;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:37:5,29,2:5:194:29,2:1137,80:-92.0035,0,-7.21307,-86.9179,-9.34823,-102.255 0|0:34:21,12,0:21:807:12,0:470,0:-32.5274,0,-62.8404,-38.849,-66.4528,-105.104 0|0:49:18,31,0:18:690:31,0:1220,0:-95.3293,0,-47.6816,-100.748,-57.0136,-157.375 dDocent_Contig_153 38 . G C 91.3798 . AB=0.307692;ABP=7.18621;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=55;DPB=55;DPRA=0.619048;EPP=11.6962;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=2028;RO=51;RPL=0;RPP=11.6962;RPPR=113.755;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:29,0:29:1153:0:0:0,-8.72987,-104.056 0/0:13:13,0:13:509:0:0:0,-3.91339,-46.1542 0/1:13:9,4:9:366:4:161:-10.9619,0,-29.3912 dDocent_Contig_154 24 . C T 95.2762 . AB=0.263158;ABP=12.2676;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X3M1X;DP=31;DPB=31;DPRA=0.791667;EPP=13.8677;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.6;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=980;RO=25;RPL=0;RPP=13.8677;RPPR=57.2971;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:12:12,0:12:456:0:0:0,-3.61236,-41.3824 0|1:10:6,3:6:241:3:119:-7.97997,0,-18.9493 0|1:9:7,2:7:283:2:82:-5.07041,0,-23.1343 dDocent_Contig_155 10 . G A 610.657 . AB=0.147799;ABP=345.639;AC=3;AF=0.5;AN=6;AO=47;CIGAR=1X;DP=318;DPB=318;DPRA=0;EPP=105.07;EPPR=346.351;GTI=0;LEN=1;MEANALT=1;MQM=57.7021;MQMR=58.5498;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.811808;PAO=0;PQA=0;PQR=0;PRO=0;QA=1842;QR=10415;RO=271;RPL=0;RPP=105.07;RPPR=591.479;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=239;SRP=346.351;SRR=32;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:166:144,22:144:5491:22:835:-25.4895,0,-443.416 0/1:64:49,15:49:1896:15:603:-35.3426,0,-143.336 0/1:88:78,10:78:3028:10:404:-5.75649,0,-244.524 dDocent_Contig_156 17 . C T 441.116 . AB=0.116776;ABP=2930.55;AC=3;AF=0.5;AN=6;AO=268;CIGAR=1X;DP=2295;DPB=2295;DPRA=0;EPP=559.199;EPPR=4120.26;GTI=0;LEN=1;MEANALT=3;MQM=35.7276;MQMR=30.7021;NS=3;NUMALT=1;ODDS=0;PAIRED=0.343284;PAIREDR=0.606945;PAO=0;PQA=0;PQR=0;PRO=0;QA=10596;QR=79386;RO=1987;RPL=0;RPP=584.965;RPPR=4317.73;RPR=268;RUN=1;SAF=265;SAP=559.199;SAR=3;SRF=1964;SRP=4120.26;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:798:692,92:692:27634:92:3615:-28.3539,0,-1423.89 0/1:704:599,91:599:23805:91:3598:-19.0752,0,-1233.35 0/1:793:696,85:696:27947:85:3383:-2.10427,0,-1523.33 dDocent_Contig_157 77 . A G 11294.1 . AB=0.176538;ABP=1598.84;AC=6;AF=1;AN=6;AO=310;CIGAR=1X6M;DP=1756;DPB=2002;DPRA=0;EPP=658.907;EPPR=146.327;GTI=0;LEN=1;MEANALT=44;MQM=34.2806;MQMR=50.3485;NS=3;NUMALT=6;ODDS=4.44089e-16;PAIRED=0.345161;PAIREDR=0.545455;PAO=34.25;PQA=1178.25;PQR=2622.33;PRO=77.1667;QA=8055;QR=2205;RO=66;RPL=310;RPP=676.167;RPPR=146.327;RPR=0;RUN=1;SAF=308;SAP=658.907;SAR=2;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:623:33,46,58,137,55,104,40:33:1082:46,58,137,55,104,40:1550,1122,3585,1486,2668,1334:-356.477,-284.766,-358.275,-295.228,-300.94,-365.125,-106.053,-111.766,-122.23,-152.169,-256.225,-261.937,-272.399,-83.2238,-327.025,-172.999,-178.712,-189.175,0,-150.17,-229.049,-283.681,-289.393,-299.855,-110.68,-260.851,-177.626,-358.996 1|1:550:18,10,78,117,35,82,39:18:609:10,78,117,35,82,39:312,1761,3293,898,1984,1337:-337.647,-326.826,-364.303,-220.444,-244.691,-237.451,-98.5631,-122.811,-16.43,-103.83,-277.158,-301.405,-195.024,-73.1427,-307.109,-204.015,-228.262,-121.882,0,-178.594,-219.817,-260.929,-285.176,-178.794,-56.913,-235.508,-162.365,-289.676 1|1:583:15,27,61,112,51,124,20:15:514:27,61,112,51,124,20:936,1194,3082,1406,3403,677:-440.804,-381.479,-409.179,-372.872,-344.86,-390.336,-216.168,-188.156,-179.551,-218.28,-338.48,-310.468,-301.862,-145.157,-358.955,-193.322,-165.31,-156.706,0,-122.312,-191.822,-398.203,-370.191,-361.584,-204.88,-327.192,-182.034,-428.01 dDocent_Contig_158 1 . N G 48.6826 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=12;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:35:-1.19797,-0.30103,0 1/1:3:0,3:0:0:3:105:-3.3543,-0.90309,0 dDocent_Contig_159 99 . N T 315.227 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=27;CIGAR=2X;DP=27;DPB=36;DPRA=0;EPP=61.6401;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=13.5926;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=18;PQA=648;PQR=0;PRO=0;QA=1013;QR=0;RO=0;RPL=27;RPP=61.6401;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=61.6401;SAR=27;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,3:0:0:3:112:-1.73756,-0.90309,0 1|1:13:0,13:0:0:13:486:-23.101,-3.91339,0 1|1:11:0,11:0:0:11:415:-6.20414,-3.31133,0 dDocent_Contig_160 99 . N A 3185.82 . AB=0.272727;ABP=52.3619;AC=6;AF=1;AN=6;AO=34;CIGAR=1M6X;DP=155;DPB=1898.71;DPRA=0;EPP=76.8404;EPPR=0;GTI=0;LEN=1;MEANALT=4;MQM=48.1471;MQMR=0;NS=3;NUMALT=2;ODDS=0;PAIRED=0.794118;PAIREDR=0;PAO=4324.67;PQA=139327;PQR=112358;PRO=3497.67;QA=1320;QR=0;RO=0;RPL=34;RPP=76.8404;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=76.8404;SAR=34;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:63:0,41,14:0:0:41,14:1531,542:-123.255,-43.5883,-31.246,-79.6579,0,-75.4435 1|1:47:0,29,16:0:0:29,16:1077,618:-115.759,-43.1551,-34.4253,-72.6003,0,-67.7838 1|1:45:0,39,4:0:0:39,4:1469,160:-83.0908,-11.7402,0,-73.6365,-2.2878,-72.4324 dDocent_Contig_161 10 . G T 1884.56 . AB=0.327027;ABP=99.1654;AC=3;AF=0.5;AN=6;AO=121;CIGAR=1X;DP=370;DPB=370;DPRA=0;EPP=248.674;EPPR=333.154;GTI=0;LEN=1;MEANALT=1.66667;MQM=32.7769;MQMR=59.6694;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.897959;PAO=0;PQA=0;PQR=0;PRO=0;QA=3829;QR=9547;RO=245;RPL=0;RPP=265.758;RPPR=535.021;RPR=121;RUN=1;SAF=2;SAP=248.674;SAR=119;SRF=219;SRP=333.154;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:98:64,32:64:2499:32:985:-52.143,0,-195.779 0/1:126:85,39:85:3272:39:1210:-56.0067,0,-256.783 0/1:146:96,50:96:3776:50:1634:-85.8288,0,-295.906 dDocent_Contig_162 107 . N C 64.5896 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:68:-6.45788,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_163 35 . T C 412.191 . AB=0.470588;ABP=3.26577;AC=2;AF=0.333333;AN=6;AO=19;CIGAR=1X;DP=79;DPB=79;DPRA=0;EPP=44.2683;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=713;QR=2309;RO=60;RPL=0;RPP=44.2683;RPPR=133.299;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:45:42,3:42:1617:3:110:0,-3.2858,-135.527 0/1:12:10,2:10:381:2:74:-3.4125,0,-31.0281 0/1:22:8,14:8:311:14:529:-41.3239,0,-21.7308 dDocent_Contig_164 24 . T C 46.7279 . AB=0.153846;ABP=30.0702;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=89;DPB=89;DPRA=0.825397;EPP=11.6962;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=3279;RO=85;RPL=0;RPP=11.6962;RPPR=187.585;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:38,0:38:1452:0:0:0,-11.4391,-130.937 0/0:25:25,0:25:984:0:0:0,-7.52575,-88.8605 0/1:26:22,4:22:843:4:155:-6.49669,0,-68.3405 dDocent_Contig_165 26 . A G 126.986 . AB=0.153846;ABP=70.66;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=194;DPB=194;DPRA=1.36538;EPP=29.068;EPPR=398.218;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=456;QR=7079;RO=182;RPL=0;RPP=29.068;RPPR=398.218;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=182;SRP=398.218;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:77:75,2:75:2906:2:81:0,-15.4936,-253.988 0/1:65:55,10:55:2127:10:375:-14.5225,0,-172.064 0/0:52:52,0:52:2046:0:0:0,-15.6536,-184.34 dDocent_Contig_166 105 . N C 661.056 . AB=0.259259;ABP=16.6021;AC=6;AF=1;AN=6;AO=7;CIGAR=3X4M4I2M1X;DP=35;DPB=49;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=4;MQM=29.8571;MQMR=0;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=209;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:8:0,1,4,2,0:0:0:1,4,2,0:34,134,44,0:-13.6351,-11.1445,-10.8434,-2.75862,-0.250521,-1.5545,-10.8506,-8.36575,0,-10.2485,-13.6351,-11.1445,-2.75862,-10.8506,-13.6351 1|1:8:0,2,4,0,1:0:0:2,4,0,1:71,103,0,23:-13.3107,-7.51581,-6.91375,-5.81037,0,-4.60625,-13.3107,-7.51581,-5.81037,-13.3107,-11.8228,-6.02731,-4.34908,-11.8228,-11.5218 1|1:19:0,0,11,0,6:0:0:0,11,0,6:0,384,0,186:-44.1624,-44.1624,-44.1624,-13.3614,-13.3614,-10.0501,-44.1624,-44.1624,-13.3614,-44.1624,-30.867,-30.867,0,-30.867,-29.0608 dDocent_Contig_169 56 . T A 81.2129 . AB=0.123288;ABP=92.9925;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=111;DPB=111;DPRA=0.960526;EPP=22.5536;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=365;QR=3914;RO=102;RPL=9;RPP=22.5536;RPPR=224.5;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:38,0:38:1488:0:0:0,-11.4391,-134.168 0/1:31:27,4:27:1047:4:161:-5.54334,0,-85.1874 0/1:42:37,5:37:1379:5:204:-6.10077,0,-111.721 dDocent_Contig_170 24 . G C 103.325 . AB=0.148148;ABP=61.0771;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=73;DPB=73;DPRA=1.42105;EPP=20.3821;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=53;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.892308;PAO=0;PQA=0;PQR=0;PRO=0;QA=324;QR=2552;RO=65;RPL=0;RPP=20.3821;RPPR=144.156;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:744:0:0:0,-5.71957,-67.2813 0/1:33:27,6:27:1059:6:242:-12.1201,0,-85.6716 0/1:21:19,2:19:749:2:82:-1.41789,0,-61.41 dDocent_Contig_171 52 . T C 38.2908 . AB=0.157895;ABP=22.325;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=71;DPB=71;DPRA=0.730769;EPP=9.52472;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=2308;RO=68;RPL=3;RPP=9.52472;RPPR=150.67;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:906:0:0:0,-8.12781,-81.8355 0/1:19:16,3:16:561:3:122:-5.65292,0,-45.0956 0/0:25:25,0:25:841:0:0:0,-7.52575,-75.9853 dDocent_Contig_174 27 . A G 241.605 . AB=0.185714;ABP=63.067;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=187;DPB=187;DPRA=1.19658;EPP=31.2394;EPPR=380.846;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=519;QR=6935;RO=174;RPL=0;RPP=31.2394;RPPR=380.846;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=174;SRP=380.846;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:68:68,0:68:2717:0:0:0,-20.47,-244.651 0/0:49:49,0:49:1941:0:0:0,-14.7505,-174.899 0/1:70:57,13:57:2277:13:519:-25.9844,0,-184.025 dDocent_Contig_175 40 . A C 283.509 . AB=0.27907;ABP=21.2406;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=63;DPB=63;DPRA=1.075;EPP=29.068;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=476;QR=2024;RO=51;RPL=0;RPP=29.068;RPPR=113.755;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:780:0:0:0,-6.0206,-70.5093 0/1:12:11,1:11:438:1:41:-0.482207,0,-36.1609 0/1:31:20,11:20:806:11:435:-30.1704,0,-63.5257 dDocent_Contig_176 7 . T C 2335.32 . AB=0.46875;ABP=5.18177;AC=4;AF=0.666667;AN=6;AO=120;CIGAR=1X3M;DP=256;DPB=256;DPRA=0;EPP=254.973;EPPR=68.3354;GTI=0;LEN=1;MEANALT=6.33333;MQM=32.1667;MQMR=51.5;NS=3;NUMALT=5;ODDS=0;PAIRED=0.95;PAIREDR=0.895833;PAO=0;PQA=0;PQR=0;PRO=0;QA=3458;QR=1796;RO=48;RPL=0;RPP=263.587;RPPR=107.241;RPR=120;RUN=1;SAF=119;SAP=254.973;SAR=1;SRF=43;SRP=68.3354;SRR=5;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:86:17,3,18,10,31,1:17:649:3,18,10,31,1:115,670,355,1003,34:-67.7986,-64.0774,-116.056,-30.0475,-74.0944,-77.5137,-45.6339,-89.6803,-55.6534,-95.508,0,-44.0499,-10.0333,-25.6099,-43.5558,-70.1586,-114.202,-80.175,-95.7609,-50.1305,-122.739 0|1:63:12,5,0,4,38,0:12:457:5,0,4,38,0:178,0,154,867,0:-54.6917,-44.3588,-78.3852,-58.3041,-79.8903,-93.8315,-46.292,-67.8808,-81.823,-80.6189,0,-21.5765,-35.5068,-23.5039,-24.0676,-58.3041,-79.8903,-93.8315,-81.823,-35.5068,-93.8315 1|1:107:19,3,11,16,51,6:19:690:3,11,16,51,6:116,415,618,1588,241:-116.564,-112.754,-156.882,-109.813,-145.311,-151.528,-72.8676,-108.372,-105.428,-113.085,-4.40076,-39.8974,-36.9732,0,-34.0762,-107.01,-142.511,-139.567,-102.627,-34.1544,-150.234 dDocent_Contig_177 233 . A G 257.17 . AB=0.275;ABP=20.5992;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X3M;DP=40;DPB=40;DPRA=0;EPP=19.0002;EPPR=42.0968;GTI=0;LEN=1;MEANALT=2.33333;MQM=57.0909;MQMR=60;NS=3;NUMALT=3;ODDS=6.93889e-18;PAIRED=0.818182;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=421;QR=707;RO=18;RPL=11;RPP=26.8965;RPPR=42.0968;RPR=0;RUN=1;SAF=1;SAP=19.0002;SAR=10;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:9:8,0,0,1:8:318:0,0,1:0,0,41:-1.3853,-3.79354,-29.964,-3.79354,-29.964,-29.964,0,-26.5785,-26.5785,-26.2775 0|1:17:4,4,2,7:4:153:4,2,7:127,56,282:-22.0963,-13.6422,-24.9936,-18.8777,-21.7795,-30.8334,0,-2.92601,-8.16487,-10.4811 0|1:14:6,2,3,3:6:236:2,3,3:79,109,98:-7.09788,-2.39038,-21.2247,0,-12.9284,-18.5307,-1.06973,-13.9878,-11.599,-19.5878 dDocent_Contig_178 9 . G T 177.874 . AB=0.140187;ABP=123.334;AC=1;AF=0.166667;AN=6;AO=30;CIGAR=1X;DP=303;DPB=303;DPRA=0;EPP=68.1545;EPPR=527.917;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=58.5911;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.148699;PAO=0;PQA=0;PQR=0;PRO=0;QA=1150;QR=10227;RO=269;RPL=0;RPP=68.1545;RPPR=587.136;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=262;SRP=527.917;SRR=7;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:113:104,9:104:3946:9:347:0,-2.42712,-317.584 0/0:83:73,6:73:2773:6:231:0,-2.95994,-227.872 0/1:107:92,15:92:3508:15:572:-19.6113,0,-283.538 dDocent_Contig_179 10 . C A 92.0097 . AB=0.227273;ABP=17.2236;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=69;DPB=69;DPRA=0.93617;EPP=13.8677;EPPR=114.996;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.4;PAIREDR=0.761905;PAO=0;PQA=0;PQR=0;PRO=0;QA=192;QR=2483;RO=63;RPL=0;RPP=13.8677;RPPR=139.813;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=60;SRP=114.996;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:26,0:26:1020:0:0:0,-7.82678,-91.9841 0/1:22:17,5:17:669:5:192:-11.0249,0,-53.9207 0/0:20:20,0:20:794:0:0:0,-6.0206,-71.775 dDocent_Contig_180 34 . C A 80.3582 . AB=0.178571;ABP=28.1373;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=59;DPB=59;DPRA=1.80645;EPP=13.8677;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=2149;RO=54;RPL=0;RPP=13.8677;RPPR=120.27;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:680:0:0:0,-5.11751,-61.5299 0/1:28:23,5:23:898:5:199:-9.85972,0,-72.6981 0/0:14:14,0:14:571:0:0:0,-4.21442,-51.7319 dDocent_Contig_181 30 . G A 43.8387 . AB=0.1875;ABP=16.582;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=42;DPB=42;DPRA=1.23077;EPP=9.52472;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=1543;RO=39;RPL=0;RPP=9.52472;RPPR=87.6977;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:13,3:13:516:3:115:-5.90673,0,-41.9688 0/0:13:13,0:13:507:0:0:0,-3.91339,-45.9733 0/0:13:13,0:13:520:0:0:0,-3.91339,-47.1453 dDocent_Contig_182 160 . G T 165.098 . AB=0.169014;ABP=70.5706;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=126;DPB=126;DPRA=0;EPP=31.2394;EPPR=248.387;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=460;QR=4280;RO=113;RPL=13;RPP=31.2394;RPPR=248.387;RPR=0;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=248.387;SRR=113;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:55:54,1:54:2008:1:8:0,-15.7567,-180.13 0/1:41:34,7:34:1279:7:258:-11.2318,0,-103.045 0/1:30:25,5:25:993:5:194:-8.80087,0,-80.6416 dDocent_Contig_183 1 . N G 97.967 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:105:-9.79616,-0.90309,0 dDocent_Contig_184 38 . G A 222.491 . AB=0.314286;ABP=13.4954;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X;DP=121;DPB=121;DPRA=0;EPP=37.7539;EPPR=231.015;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=580;QR=4075;RO=105;RPL=0;RPP=37.7539;RPPR=231.015;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:51:47,4:47:1799:4:158:0,-0.751879,-147.542 0/0:35:34,1:34:1346:1:41:0,-6.44148,-117.317 0/1:35:24,11:24:930:11:381:-24.0727,0,-73.4567 dDocent_Contig_186 21 . A C 99.4303 . AB=0.181818;ABP=32.0291;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=105;DPB=105;DPRA=0.916667;EPP=16.0391;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=237;QR=3910;RO=99;RPL=0;RPP=16.0391;RPPR=217.986;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:52:52,0:52:2032:0:0:0,-15.6536,-183.073 0/1:33:27,6:27:1082:6:237:-11.7669,0,-87.7337 0/0:20:20,0:20:796:0:0:0,-6.0206,-71.9555 dDocent_Contig_188 38 . T C 1292.7 . AB=0.0519802;ABP=1411.72;AC=0;AF=0;AN=6;AO=42;CIGAR=1X1M1X;DP=808;DPB=808;DPRA=0;EPP=94.2121;EPPR=1198.51;GTI=0;LEN=1;MEANALT=5.33333;MQM=60;MQMR=59.8694;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.960191;PAO=0;PQA=0;PQR=0;PRO=0;QA=1669;QR=24566;RO=628;RPL=0;RPP=94.2121;RPPR=1366.69;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=608;SRP=1198.51;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:313:236,21,35:236:9207:21,35:840,1378:-42.3041,-44.1503,-794.621,0,-687.594,-746.254 0|0:167:142,5,14:142:5522:5,14:197,544:-1.95328,-28.4903,-480.746,0,-437.554,-449.547 0|0:328:250,16,51:250:9837:16,51:632,2013:-90.3755,-113.632,-914.02,0,-753.209,-789.857 dDocent_Contig_192 194 . T A 359.987 . AB=0.451613;ABP=3.64073;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=69;DPB=69;DPRA=1.63158;EPP=33.4109;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=517;QR=2185;RO=55;RPL=14;RPP=33.4109;RPPR=122.441;RPR=0;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=122.441;SRR=55;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:17,14:17:672:14:517:-37.5216,0,-51.4795 0/0:17:17,0:17:668:0:0:0,-5.11751,-60.451 0/0:21:21,0:21:845:0:0:0,-6.32163,-76.3628 dDocent_Contig_194 9 . G T 1937.7 . AB=0.233333;ABP=77.1299;AC=1;AF=0.166667;AN=6;AO=28;CIGAR=2X;DP=120;DPB=120;DPRA=0;EPP=63.8115;EPPR=44.2683;GTI=0;LEN=1;MEANALT=2;MQM=40.9286;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.5;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1085;QR=736;RO=19;RPL=0;RPP=63.8115;RPPR=44.2683;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:39:5,2,32:5:197:2,32:77,1077:-73.7425,-71.9865,-87.6056,0,-13.1207,-6.7025 1|0:31:4,15,12:4:156:15,12:586,423:-54.7775,-11.8237,-20.1633,-31.251,0,-40.4682 0|0:50:10,11,29:10:383:11,29:422,1063:-70.7728,-53.6236,-81.7576,0,-11.3924,-22.7676 dDocent_Contig_196 7 . T G 108.342 . AB=0.173077;ABP=51.2838;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=83;DPB=83;DPRA=0;EPP=24.725;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=334;QR=2761;RO=73;RPL=0;RPP=24.725;RPPR=161.528;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:23,7:23:860:7:234:-12.3534,0,-68.6831 0/1:22:20,2:20:755:2:74:-0.402774,0,-61.655 0/0:31:30,1:30:1146:1:26:0,-6.7321,-100.841 dDocent_Contig_197 39 . T A 74.2035 . AB=0.25;ABP=13.8677;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=60;DPB=60;DPRA=1;EPP=13.8677;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=166;QR=2127;RO=54;RPL=0;RPP=13.8677;RPPR=120.27;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:862:0:0:0,-6.62266,-77.888 0/0:18:17,0:17:669:0:0:0,-5.11751,-60.1418 0/1:20:15,5:15:596:5:166:-9.24425,0,-47.9581 dDocent_Contig_199 37 . T C 1526.92 . AB=0.0877193;ABP=87.1644;AC=0;AF=0;AN=6;AO=5;CIGAR=1X2M1X;DP=99;DPB=99;DPRA=0;EPP=13.8677;EPPR=94.2121;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=1540;RO=42;RPL=0;RPP=13.8677;RPPR=94.2121;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:42:17,0,25:17:622:0,25:0,1002:-77.8349,-82.9524,-133.767,0,-51.1944,-43.6687 0|0:21:5,2,14:5:185:2,14:75,548:-43.5617,-38.9255,-53.4522,0,-8.98608,-10.9164 0|0:36:20,3,13:20:733:3,13:118,520:-36.8183,-33.1339,-92.1207,0,-50.1772,-55.9734 dDocent_Contig_200 32 . C T 72.7857 . AB=0.123288;ABP=92.9925;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X1M1X;DP=108;DPB=108;DPRA=1.04286;EPP=22.5536;EPPR=213.643;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=357;QR=3806;RO=97;RPL=0;RPP=22.5536;RPPR=213.643;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:35:34,0:34:1316:0:0:0,-10.235,-118.316 0|1:24:21,3:21:813:3:113:-3.31409,0,-66.2634 0|1:49:42,6:42:1677:6:244:-7.4804,0,-136.303 dDocent_Contig_201 83 . A C 1975.6 . AB=0.669643;ABP=31.0068;AC=3;AF=0.5;AN=6;AO=75;CIGAR=6M1X1M;DP=112;DPB=111.625;DPRA=0;EPP=165.871;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2611;QR=1195;RO=33;RPL=75;RPP=165.871;RPPR=74.6689;RPR=0;RUN=1;SAF=75;SAP=165.871;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:40:11,3,25:11:398:3,25:112,883:-68.6156,-62.7538,-94.3455,0,-23.3368,-24.9863 0|1:34:12,0,22:12:442:0,22:0,796:-61.7293,-65.3417,-101.489,0,-36.513,-29.8904 0|1:38:10,0,28:10:355:0,28:0,932:-72.7375,-75.7478,-104.679,0,-29.2804,-20.8515 dDocent_Contig_202 107 . N T 318.213 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=337;QR=0;RO=0;RPL=0;RPP=24.725;RPPR=0;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1/1:5:0,5:0:0:5:163:-14.9919,-1.50515,0 1/1:4:0,4:0:0:4:139:-12.8527,-1.20412,0 dDocent_Contig_203 40 . A C 5102.19 . AB=0.652174;ABP=53.8983;AC=3;AF=0.5;AN=6;AO=165;CIGAR=1X;DP=253;DPB=253;DPRA=0;EPP=361.303;EPPR=191.928;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6572;QR=3408;RO=87;RPL=0;RPP=361.303;RPPR=191.928;RPR=165;RUN=1;SAF=165;SAP=361.303;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:95:45,50:45:1802:50:1973:-149.181,0,-133.797 0/1:60:9,50:9:354:50:2008:-162.74,0,-14.0495 0/1:98:33,65:33:1252:65:2591:-203.821,0,-83.4424 dDocent_Contig_204 30 . T C 823.299 . AB=0.5;ABP=3.0103;AC=3;AF=0.5;AN=6;AO=30;CIGAR=1X;DP=60;DPB=60;DPRA=0;EPP=68.1545;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1165;QR=1189;RO=30;RPL=0;RPP=68.1545;RPPR=68.1545;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:6,4:6:224:4:163:-12.0481,0,-17.5039 0/1:21:9,12:9:364:12:475:-36.7796,0,-26.8028 0/1:29:15,14:15:601:14:527:-39.0251,0,-45.6991 dDocent_Contig_205 10 . G A 3113.17 . AB=0.571429;ABP=11.0758;AC=5;AF=0.833333;AN=6;AO=104;CIGAR=2M1X11M;DP=182;DPB=179.143;DPRA=0;EPP=228.843;EPPR=46.4397;GTI=0;LEN=1;MEANALT=4.66667;MQM=47.2212;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.971154;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3809;QR=788;RO=20;RPL=0;RPP=228.843;RPPR=46.4397;RPR=104;RUN=1;SAF=104;SAP=228.843;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:66:8,17,1,40:8:315:17,1,40:501,40,1542:-131.442,-97.711,-118.511,-130.821,-120.6,-156.441,-10.1405,0,-33.0609,-24.05 0|1:41:1,4,4,28:1:39:4,4,28:108,156,1021:-90.2765,-83.1537,-85.1569,-78.6669,-74.4513,-80.6704,-8.73216,-4.5283,0,-3.51902 1|1:75:11,18,8,36:11:434:18,8,36:519,302,1246:-95.1077,-61.4836,-91.7874,-75.3979,-74.189,-108.714,-1.17013,0,-13.8867,-26.0757 dDocent_Contig_206 15 . A T 239.023 . AB=0.322581;ABP=11.486;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=43;DPB=43;DPRA=1.29167;EPP=24.725;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=51.7879;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.939394;PAO=0;PQA=0;PQR=0;PRO=0;QA=400;QR=1332;RO=33;RPL=0;RPP=24.725;RPPR=74.6689;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:13,5:13:526:5:196:-12.5945,0,-28.1289 0/1:13:8,5:8:321:5:204:-14.8306,0,-25.3422 0/0:12:12,0:12:485:0:0:0,-3.61236,-44.0003 dDocent_Contig_207 22 . A T 202.175 . AB=0.290323;ABP=14.8483;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X1M1X;DP=41;DPB=41;DPRA=1.55;EPP=22.5536;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=359;QR=1226;RO=32;RPL=0;RPP=22.5536;RPPR=72.4974;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:10:10,0:10:385:0:0:0,-3.0103,-35.0038 0|1:16:12,4:12:454:4:161:-10.059,0,-36.381 0|1:15:10,5:10:387:5:198:-13.6814,0,-30.6705 dDocent_Contig_208 8 . T G 35.0905 . AB=0.112903;ABP=83.705;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=106;DPB=106;DPRA=0.704545;EPP=18.2106;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=269;QR=3778;RO=99;RPL=0;RPP=18.2106;RPPR=217.986;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:44:44,0:44:1682:0:0:0,-13.2453,-151.641 0/1:29:25,4:25:932:4:152:-5.31933,0,-75.4653 0/1:33:30,3:30:1164:3:117:-0.976391,0,-95.1245 dDocent_Contig_209 24 . G T 705.681 . AB=0.464286;ABP=3.63072;AC=2;AF=0.333333;AN=6;AO=27;CIGAR=1X;DP=89;DPB=89;DPRA=0;EPP=61.6401;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1044;QR=2483;RO=62;RPL=0;RPP=61.6401;RPPR=137.642;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:22,7:22:880:7:279:-16.7502,0,-70.7796 0/0:33:32,1:32:1280:1:41:0,-5.83942,-111.375 0/1:27:8,19:8:323:19:724:-57.3408,0,-21.3106 dDocent_Contig_211 7 . T A 245.75 . AB=0.197183;ABP=59.5603;AC=1;AF=0.166667;AN=6;AO=23;CIGAR=1X;DP=213;DPB=213;DPRA=0;EPP=52.9542;EPPR=415.59;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=867;QR=7213;RO=190;RPL=0;RPP=52.9542;RPPR=415.59;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=190;SRP=415.59;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:55:52,3:52:1962:3:107:0,-6.57614,-166.847 0/1:71:57,14:57:2160:14:527:-26.3989,0,-173.258 0/0:87:81,6:81:3091:6:233:0,-4.84953,-257.009 dDocent_Contig_212 31 . G A 60.9398 . AB=0.12766;ABP=59.6072;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=178;DPB=178;DPRA=0.717557;EPP=16.0391;EPPR=376.504;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=6693;RO=172;RPL=0;RPP=16.0391;RPPR=376.504;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=172;SRP=376.504;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:75:75,0:75:2921:0:0:0,-22.5772,-263.023 0/1:47:41,6:41:1577:6:241:-7.91789,0,-128.033 0/0:56:56,0:56:2195:0:0:0,-16.8577,-197.736 dDocent_Contig_213 54 . C T 207.215 . AB=0.347826;ABP=7.63648;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=65;DPB=65;DPRA=1.09524;EPP=20.3821;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=320;QR=2238;RO=57;RPL=8;RPP=20.3821;RPPR=126.784;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:15,8:15:580:8:320:-22.2444,0,-45.6122 0/0:28:28,0:28:1117:0:0:0,-8.42884,-100.815 0/0:14:14,0:14:541:0:0:0,-4.21442,-49.0357 dDocent_Contig_215 12 . T G 62.9599 . AB=0.130435;ABP=30.2953;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=3M1X1M1X1M;DP=65;DPB=65.5714;DPRA=1.4375;EPP=9.52472;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=55.3333;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=109;QR=2180;RO=56;RPL=0;RPP=9.52472;RPPR=124.613;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:20,3,0:20:784:3,0:109,0:-3.17328,0,-63.9605,-9.19388,-64.8636,-73.6929 0|0:16:16,0,0:16:604:0,0:0,0:0,-4.81648,-54.6891,-4.81648,-54.6891,-54.6891 0|0:26:20,0,4:20:792:0,4:0,153:-6.63598,-12.6566,-77.8921,0,-65.3367,-64.1326 dDocent_Contig_216 135 . T C 2849.62 . AB=0.0606061;ABP=113.69;AC=0;AF=0;AN=6;AO=4;CIGAR=1X3M1X2M1X;DP=177;DPB=177;DPRA=0;EPP=11.6962;EPPR=137.642;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=136;QR=2086;RO=62;RPL=0;RPP=11.6962;RPPR=137.642;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=137.642;SRR=62;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:62:30,0,32:30:1004:0,32:0,1097:-80.3744,-89.4053,-170.699,0,-81.6319,-71.9989 0|0:49:18,0,31:18:608:0,31:0,1060:-80.9576,-86.3762,-135.655,0,-49.6181,-40.2862 0|0:66:14,4,48:14:474:4,48:136,1643:-129.153,-122.335,-159.559,0,-27.3949,-23.9776 dDocent_Contig_217 12 . G C 1375.92 . AB=0.346667;ABP=33.6425;AC=3;AF=0.5;AN=6;AO=52;CIGAR=1X;DP=150;DPB=150;DPRA=0;EPP=115.927;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2081;QR=3909;RO=98;RPL=0;RPP=115.927;RPPR=215.815;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:39,19:39:1569:19:746:-49.9985,0,-123.986 0/1:48:27,21:27:1055:21:847:-62.0906,0,-80.7931 0/1:44:32,12:32:1285:12:488:-31.0262,0,-102.669 dDocent_Contig_218 8 . T C 2771.84 . AB=0.409449;ABP=21.1002;AC=3;AF=0.5;AN=6;AO=104;CIGAR=1X;DP=254;DPB=254;DPRA=0;EPP=228.843;EPPR=326.56;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3982;QR=5699;RO=149;RPL=0;RPP=228.843;RPPR=326.56;RPR=104;RUN=1;SAF=104;SAP=228.843;SAR=0;SRF=149;SRP=326.56;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:98:51,46:51:1945:46:1751:-128.274,0,-145.724 0/1:74:37,37:37:1405:37:1423:-106.073,0,-104.456 0/1:82:61,21:61:2349:21:808:-48.3603,0,-186.938 dDocent_Contig_219 7 . T A 199.859 . AB=0.27027;ABP=19.9713;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=46;DPB=46;DPRA=2.05556;EPP=24.725;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=377;QR=1368;RO=36;RPL=0;RPP=24.725;RPPR=81.1833;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:334:0:0:0,-2.70927,-30.4094 0/1:11:9,2:9:341:2:71:-3.42975,0,-27.7343 0/1:26:18,8:18:693:8:306:-20.0737,0,-54.877 dDocent_Contig_222 11 . C T 4289.38 . AB=0.880795;ABP=193.194;AC=3;AF=0.5;AN=6;AO=133;CIGAR=1X;DP=151;DPB=151;DPRA=0;EPP=291.816;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.6111;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.944444;PAO=0;PQA=0;PQR=0;PRO=0;QA=5312;QR=724;RO=18;RPL=0;RPP=291.816;RPPR=42.0968;RPR=133;RUN=1;SAF=133;SAP=291.816;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:7,38:7:286:38:1530:-124.393,0,-12.5685 0/1:48:6,42:6:239:42:1659:-135.086,0,-7.43498 0/1:58:5,53:5:199:53:2123:-173.788,0,-0.815672 dDocent_Contig_223 43 . G A 147.25 . AB=0.2;ABP=38.1882;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=45;DPB=45;DPRA=0;EPP=22.5536;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=362;QR=1449;RO=36;RPL=0;RPP=22.5536;RPPR=81.1833;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:15,2:15:600:2:80:-2.47428,0,-49.2172 0/1:13:11,2:11:442:2:80:-3.67819,0,-36.2193 0/1:15:10,5:10:407:5:202:-14.0466,0,-32.4751 dDocent_Contig_224 20 . T C 2421.28 . AB=0.0581395;ABP=148.852;AC=0;AF=0;AN=6;AO=5;CIGAR=1X2M1X3M1X1M1X4M1X;DP=326;DPB=325.4;DPRA=0;EPP=13.8677;EPPR=48.6112;GTI=0;LEN=1;MEANALT=12;MQM=39;MQMR=60;NS=3;NUMALT=7;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=177;QR=829;RO=21;RPL=0;RPP=13.8677;RPPR=48.6112;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:102:10,0,10,6,29,11,12,15:10:398:0,10,6,29,11,12,15:0,90,236,748,184,484,75:-56.6234,-59.6337,-92.4264,-57.0145,-89.8077,-86.7974,-47.2081,-80.0026,-77.3847,-78.1965,-7.07852,-39.8823,-37.2693,-27.4561,-31.1524,-49.146,-81.9405,-79.325,-69.5169,-29.3985,-78.6291,-19.7594,-52.5584,-49.9389,-40.1323,0,-42.0701,-48.946,-60.4854,-93.278,-90.6665,-80.8559,-40.7469,-82.7983,-53.4098,-88.7625 0|0:86:5,5,4,3,30,5,15,10:5:199:5,4,3,30,5,15,10:177,36,118,617,75,595,50:-71.1086,-59.0678,-73.9617,-71.567,-74.4203,-86.7608,-67.8638,-70.717,-83.2157,-83.3589,-32.5836,-35.4389,-47.9453,-44.238,-39.9557,-68.6976,-71.5509,-84.0499,-80.3464,-45.0756,-83.5906,-23.6446,-26.4985,-39.0006,-35.2967,0,-36.1304,-35.5325,-73.1848,-76.0384,-88.5382,-84.834,-49.5766,-85.6692,-40.6184,-86.5722 0|0:138:6,0,8,6,46,13,22,22:6:232:0,8,6,46,13,22,22:0,72,238,1057,195,841,110:-119.919,-121.725,-140.789,-119.627,-138.69,-136.282,-110.121,-129.185,-127.087,-127.379,-49.3574,-68.425,-66.3318,-56.8209,-54.5777,-111.539,-130.603,-128.506,-119,-58.2448,-126.689,-53.3171,-72.3839,-70.285,-60.7784,0,-62.1959,-65.7613,-122.964,-142.027,-139.933,-130.425,-69.6867,-131.847,-73.6228,-135.404 dDocent_Contig_226 68 . 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AB=0.113402;ABP=128.933;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=187;DPB=187;DPRA=2.15556;EPP=26.8965;EPPR=385.189;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=416;QR=6927;RO=176;RPL=0;RPP=26.8965;RPPR=385.189;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=176;SRP=385.189;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:56:56,0:56:2179:0:0:0,-16.8577,-196.315 0/0:34:34,0:34:1338:0:0:0,-10.235,-120.691 0/1:97:86,11:86:3410:11:416:-8.58518,0,-277.764 dDocent_Contig_230 82 . C A 48.8813 . AB=0.173913;ABP=24.253;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=57;DPB=57;DPRA=1.35294;EPP=11.6962;EPPR=115.927;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=144;QR=1847;RO=52;RPL=4;RPP=11.6962;RPPR=115.927;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:18,4:18:649:4:144:-6.41101,0,-51.8528 0/0:20:20,0:20:712:0:0:0,-6.0206,-64.406 0/0:14:14,0:14:486:0:0:0,-4.21442,-44.0701 dDocent_Contig_231 17 . T G 7182.86 . AB=0.0770878;ABP=728.501;AC=1;AF=0.166667;AN=6;AO=36;CIGAR=2X2M;DP=467;DPB=467;DPRA=0;EPP=81.1833;EPPR=191.928;GTI=0;LEN=1;MEANALT=9;MQM=60;MQMR=59.3103;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=0.954023;PAO=0;PQA=0;PQR=0;PRO=0;QA=1415;QR=3422;RO=87;RPL=0;RPP=81.1833;RPPR=191.928;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:152:10,12,17,12,84,3:10:399:12,17,12,84,3:453,632,467,3363,120:-292.908,-258.79,-288.04,-244.206,-239.94,-271.95,-257.54,-253.274,-238.69,-286.79,-18.8497,-14.5851,0,-13.3337,-26.4307,-286.032,-281.767,-267.182,-280.517,-41.8304,-317.992 0|0:127:22,4,7,19,52,9:22:851:4,7,19,52,9:155,273,747,2052,363:-162.207,-156.096,-224.628,-146.39,-203.393,-214.019,-107.386,-164.388,-154.682,-171.402,0,-57.0023,-47.2961,-8.29038,-54.0826,-138.907,-195.91,-186.204,-147.199,-39.8123,-205.934 0|0:188:55,12,9,5,87,0:55:2172:12,9,5,87,0:447,357,201,3464,0:-268.694,-248.661,-423.645,-255.862,-397.869,-431.75,-268.686,-410.693,-417.894,-445.778,0,-142.023,-149.224,-162.049,-152.424,-285.251,-427.257,-434.459,-447.283,-178.614,-463.847 dDocent_Contig_233 84 . T G 184.837 . AB=0.263158;ABP=21.525;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=112;DPB=112;DPRA=0;EPP=29.068;EPPR=220.158;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=419;QR=3453;RO=100;RPL=12;RPP=29.068;RPPR=220.158;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:46:45,1:45:1548:1:35:0,-10.3487,-136.115 0/0:28:27,1:27:936:1:35:0,-4.93021,-81.054 0/1:38:28,10:28:969:10:349:-20.3076,0,-76.0833 dDocent_Contig_235 70 . G T 2221.19 . AB=0.5;ABP=3.0103;AC=3;AF=0.5;AN=6;AO=84;CIGAR=1X1M1X;DP=168;DPB=168;DPRA=0;EPP=185.414;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3081;QR=2690;RO=84;RPL=84;RPP=185.414;RPPR=185.414;RPR=0;RUN=1;SAF=84;SAP=185.414;SAR=0;SRF=0;SRP=185.414;SRR=84;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:76:38,38:38:1218:38:1406:-103.954,0,-87.032 0|1:26:13,13:13:425:13:478:-35.5328,0,-30.7397 0|1:66:33,33:33:1047:33:1197:-88.1548,0,-74.6524 dDocent_Contig_236 98 . N A 1865.53 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=67;CIGAR=2X;DP=69;DPB=104;DPRA=0;EPP=148.499;EPPR=0;GTI=0;LEN=1;MEANALT=1.66667;MQM=56.2687;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.970149;PAIREDR=0;PAO=70;PQA=2290;PQR=0;PRO=0;QA=2127;QR=0;RO=0;RPL=67;RPP=148.499;RPPR=0;RPR=0;RUN=1;SAF=67;SAP=148.499;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:26:0,25:0:0:25:797:-66.7904,-7.52575,0 1|1:10:0,9:0:0:9:299:-26.9051,-2.70927,0 1|1:33:0,33:0:0:33:1031:-92.38,-9.93399,0 dDocent_Contig_237 9 . T C 45354.4 . AB=0.215748;ABP=1339.96;AC=3;AF=0.5;AN=6;AO=411;CIGAR=1X2M1X3M;DP=1905;DPB=1904.57;DPRA=0;EPP=810.74;EPPR=185.513;GTI=0;LEN=1;MEANALT=12.3333;MQM=44.6083;MQMR=60;NS=3;NUMALT=3;ODDS=2.22045e-16;PAIRED=0.403893;PAIREDR=0.0227273;PAO=0;PQA=0;PQR=0;PRO=0;QA=13942;QR=3419;RO=88;RPL=0;RPP=895.485;RPPR=194.1;RPR=411;RUN=1;SAF=401;SAP=810.74;SAR=10;SRF=87;SRP=185.513;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:774:35,156,68,496:35:1364:156,68,496:5421,2669,19385:-1887.97,-1472.55,-1537.7,-1678.99,-1365.15,-1770.64,-313.823,0,-206.422,-276.629 1|0:534:26,143,28,312:26:1005:143,28,312:4979,1108,12101:-1289.37,-906.301,-945.796,-1206.01,-897.652,-1280.12,-308.342,0,-299.691,-296.967 1|0:597:27,112,69,374:27:1050:112,69,374:3542,2728,14603:-1363.62,-1106.15,-1158.72,-1147.31,-967.996,-1212.83,-179.283,0,-41.1124,-152.991 dDocent_Contig_238 16 . T A 95.416 . AB=0.15;ABP=45.5712;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1M1X4M;DP=109;DPB=107.667;DPRA=0.97561;EPP=16.0391;EPPR=200.614;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=3612;RO=91;RPL=0;RPP=16.0391;RPPR=200.614;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:40:32,0,2,6,0:32:1273:0,2,6,0:0,79,243,0:-10.4118,-20.0447,-124.858,-13.5473,-118.358,-117.756,0,-104.82,-98.32,-103.014,-20.0447,-124.858,-118.358,-104.82,-124.858 0|0:28:25,0,0,0,3:25:981:0,0,0,3:0,0,0,121:-2.61843,-10.1442,-90.817,-10.1442,-90.817,-90.817,-10.1442,-90.817,-90.817,-90.817,0,-81.067,-81.067,-81.067,-80.164 0|0:41:34,4,0,0,3:34:1358:4,0,0,3:134,0,0,120:0,-1.27344,-111.919,-10.235,-113.123,-122.139,-10.235,-113.123,-122.139,-122.139,-0.300917,-103.238,-112.254,-112.254,-111.351 dDocent_Contig_239 58 . T C 673.162 . AB=0.210843;ABP=123.566;AC=2;AF=0.333333;AN=6;AO=35;CIGAR=1X;DP=225;DPB=225;DPRA=1.40678;EPP=79.0118;EPPR=415.59;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1335;QR=6612;RO=190;RPL=35;RPP=79.0118;RPPR=415.59;RPR=0;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=190;SRP=415.59;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:76:64,12:64:2223:12:459:-18.7802,0,-177.427 0/1:90:67,23:67:2323:23:876:-52.0588,0,-182.205 0/0:59:59,0:59:2066:0:0:0,-17.7608,-186.171 dDocent_Contig_240 14 . G A 1944.45 . AB=0.396648;ABP=19.6178;AC=3;AF=0.5;AN=6;AO=71;CIGAR=4M1X;DP=179;DPB=177.8;DPRA=0;EPP=157.185;EPPR=215.815;GTI=0;LEN=1;MEANALT=2.66667;MQM=58.662;MQMR=59.398;NS=3;NUMALT=2;ODDS=0;PAIRED=0.985915;PAIREDR=0.989796;PAO=0;PQA=0;PQR=0;PRO=0;QA=2806;QR=3805;RO=98;RPL=0;RPP=157.185;RPPR=215.815;RPR=71;RUN=1;SAF=71;SAP=157.185;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:55:27,2,25:27:1042:2,25:76,985:-71.228,-73.2968,-158.259,0,-79.583,-78.1162 0|1:55:36,0,18:36:1379:0,18:0,715:-48.2784,-59.1154,-172.268,0,-113.399,-107.98 0|1:69:35,4,28:35:1384:4,28:162,1106:-80.4615,-78.2019,-190.004,0,-100.209,-104.576 dDocent_Contig_241 7 . T C 1655.17 . AB=0.198312;ABP=190.371;AC=2;AF=0.333334;AN=6;AO=47;CIGAR=1X6M;DP=237;DPB=237;DPRA=0;EPP=105.07;EPPR=187.585;GTI=0;LEN=1;MEANALT=6;MQM=58.2553;MQMR=59.8941;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1757;QR=3251;RO=85;RPL=0;RPP=105.07;RPPR=187.585;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:68:26,3,0,5,15,16:26:1003:3,0,5,15,16:116,0,188,553,606:-41.8634,-40.352,-121.824,-49.6902,-122.727,-132.065,-34.3022,-107.34,-116.678,-115.172,-4.75286,-77.7917,-87.129,-71.7423,-82.6136,0,-73.0425,-82.3801,-66.9929,-37.4449,-77.5636 0|1:88:30,1,5,9,22,18:30:1122:1,5,9,22,18:39,192,352,814,692:-57.5052,-63.3981,-154.973,-50.7746,-139.513,-141.146,-37.6301,-126.369,-113.745,-126.798,0,-88.735,-76.1116,-62.9674,-85.2503,-9.72237,-98.4611,-85.8374,-72.693,-35.0599,-96.1805 0|1:81:29,26,0,0,10,12:29:1126:26,0,0,10,12:1004,0,0,390,467:-71.6709,0,-84.687,-80.4008,-92.5138,-172.916,-80.4008,-92.5138,-172.916,-172.916,-48.3495,-60.4638,-140.866,-140.866,-137.856,-42.0177,-54.1323,-134.534,-134.534,-102.484,-130.922 dDocent_Contig_242 9 . C T 241.863 . AB=0.100813;ABP=854.231;AC=2;AF=0.333333;AN=6;AO=84;CIGAR=1X;DP=881;DPB=881;DPRA=0;EPP=185.414;EPPR=1668.53;GTI=0;LEN=1;MEANALT=2;MQM=57.25;MQMR=53.7575;NS=3;NUMALT=1;ODDS=0;PAIRED=0.77381;PAIREDR=0.611473;PAO=0;PQA=0;PQR=0;PRO=0;QA=3189;QR=29421;RO=767;RPL=0;RPP=185.414;RPPR=1668.53;RPR=84;RUN=1;SAF=84;SAP=185.414;SAR=0;SRF=767;SRP=1668.53;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:322:278,34:278:10652:34:1281:-19.2414,0,-816.372 0/0:266:236,22:236:9051:22:851:0,-3.17087,-686.45 0/1:293:253,28:253:9718:28:1057:-8.46774,0,-750.239 dDocent_Contig_243 34 . T A 209.501 . AB=0.217391;ABP=50.8771;AC=1;AF=0.166667;AN=6;AO=19;CIGAR=1X;DP=180;DPB=180;DPRA=0;EPP=44.2683;EPPR=343.931;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=600;QR=4281;RO=157;RPL=0;RPP=44.2683;RPPR=343.931;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=157;SRP=343.931;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:63:58,3:58:1489:3:94:0,-9.78899,-125.544 0/1:69:53,15:53:1462:15:478:-22.774,0,-111.295 0/0:48:46,1:46:1330:1:28:0,-11.6386,-117.154 dDocent_Contig_244 120 . T C 222.2 . AB=0.392857;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=56;DPB=56;DPRA=2;EPP=26.8965;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=354;QR=1331;RO=45;RPL=0;RPP=26.8965;RPPR=100.727;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=100.727;SRR=45;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:17,11:17:505:11:354:-23.7429,0,-37.3082 0/0:13:13,0:13:365:0:0:0,-3.91339,-33.1244 0/0:15:15,0:15:461:0:0:0,-4.51545,-41.7862 dDocent_Contig_245 24 . T C 969.517 . AB=0.345455;ABP=25.8305;AC=3;AF=0.5;AN=6;AO=38;CIGAR=1X;DP=110;DPB=110;DPRA=0;EPP=85.5263;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1495;QR=2866;RO=72;RPL=0;RPP=85.5263;RPPR=159.356;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:35,18:35:1397:18:694:-46.8235,0,-110.036 0/1:22:14,8:14:552:8:323:-22.8163,0,-43.4014 0/1:35:23,12:23:917:12:478:-32.8348,0,-72.3027 dDocent_Contig_246 17 . G A 225.733 . AB=0.20339;ABP=48.096;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=199;DPB=199;DPRA=0.842857;EPP=29.068;EPPR=404.733;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=459;QR=7348;RO=185;RPL=0;RPP=29.068;RPPR=404.733;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=185;SRP=404.733;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:45,12:45:1774:12:459:-24.0962,0,-142.337 0/0:53:53,0:53:2102:0:0:0,-15.9546,-189.365 0/0:87:87,0:87:3472:0:0:0,-26.1896,-312.517 dDocent_Contig_247 41 . C A 2394.38 . AB=0.482955;ABP=3.45446;AC=3;AF=0.5;AN=6;AO=85;CIGAR=1X;DP=176;DPB=176;DPRA=0;EPP=187.585;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3301;QR=3575;RO=91;RPL=0;RPP=187.585;RPPR=200.614;RPR=85;RUN=1;SAF=85;SAP=187.585;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:26,25:26:1032:25:978:-72.9644,0,-77.8206 0/1:51:36,15:36:1411:15:586:-37.7242,0,-111.901 0/1:74:29,45:29:1132:45:1737:-134.272,0,-79.8745 dDocent_Contig_250 133 . A G 47.8521 . AB=0.133333;ABP=55.5599;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=127;DPB=127;DPRA=1.09756;EPP=16.0391;EPPR=265.758;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=220;QR=4323;RO=121;RPL=0;RPP=16.0391;RPPR=265.758;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=265.758;SRR=121;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:35:35,0:35:1239:0:0:0,-10.536,-111.81 0/0:47:47,0:47:1689:0:0:0,-14.1484,-152.291 0/1:45:39,6:39:1395:6:220:-6.60911,0,-112.295 dDocent_Contig_251 76 . C A 304.644 . AB=0.262295;ABP=32.9481;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=105;DPB=105;DPRA=0;EPP=39.9253;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=610;QR=3201;RO=88;RPL=17;RPP=39.9253;RPPR=194.1;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:44:43,1:43:1553:1:36:0,-9.64704,-136.459 0/1:28:21,7:21:763:7:252:-14.5995,0,-60.5674 0/1:33:24,9:24:885:9:322:-19.3878,0,-70.0388 dDocent_Contig_252 1 . N G 58.714 . AB=0;ABP=0;AC=4;AF=0.666667;AN=6;AO=3;CIGAR=1X;DP=5;DPB=5;DPRA=2;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1.5;MQM=56;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=57;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:0,0:0:0:0:0:0,0,0 1/1:1:0,1:0:0:1:7:-0.699972,-0.30103,0 1/1:3:0,2:0:0:2:50:-4.54641,-0.60206,0 dDocent_Contig_254 10 . C A 2170.67 . AB=0.0396341;ABP=606.812;AC=0;AF=0;AN=6;AO=13;CIGAR=1X4M2X1M;DP=328;DPB=328.25;DPRA=0;EPP=31.2394;EPPR=359.132;GTI=0;LEN=1;MEANALT=9.66667;MQM=58.9231;MQMR=59.9695;NS=3;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=0.72561;PAO=0;PQA=0;PQR=0;PRO=0;QA=513;QR=6516;RO=164;RPL=0;RPP=31.2394;RPPR=359.132;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=164;SRP=359.132;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:108:53,6,4,2,21,7:53:2106:6,4,2,21,7:233,155,79,839,275:-53.1271,-49.9375,-221.523,-56.3635,-210.611,-228.551,-62.6488,-216.896,-223.322,-235.438,0,-154.251,-160.677,-166.962,-167.074,-46.4633,-200.711,-207.137,-213.422,-150.777,-217.748 0|0:98:45,0,2,2,30,7:45:1786:0,2,2,30,7:0,80,77,1214,270:-86.5638,-100.11,-247.129,-93.535,-240.553,-239.951,-93.8,-240.818,-234.243,-240.216,0,-147.028,-140.453,-140.718,-137.997,-78.2108,-225.228,-218.653,-218.918,-125.128,-223.121 0|0:122:66,0,7,10,31,1:66:2624:0,7,10,31,1:0,278,401,1247,41:-82.8992,-102.767,-318.804,-79.8818,-295.919,-293.811,-69.7276,-285.765,-262.879,-282.754,0,-216.039,-193.153,-182.999,-206.707,-99.3829,-315.42,-292.534,-282.381,-212.655,-315.119 dDocent_Contig_255 26 . T C 79.5836 . AB=0.145833;ABP=55.3066;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=62;DPB=62;DPRA=0;EPP=20.3821;EPPR=118.098;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=316;QR=2025;RO=53;RPL=0;RPP=20.3821;RPPR=118.098;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:25,4:25:963:4:158:-5.71148,0,-78.135 0/0:14:13,1:13:485:1:38:0,-0.417151,-40.1927 0/1:18:15,3:15:577:3:120:-5.76915,0,-46.8514 dDocent_Contig_256 25 . C T 150.587 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=2X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:4:0,4:0:0:4:163:-15.0584,-1.20412,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_257 8 . T G 200.119 . AB=0.25;ABP=24.725;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=49;DPB=49;DPRA=2.22222;EPP=24.725;EPPR=56.5176;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.794872;PAO=0;PQA=0;PQR=0;PRO=0;QA=387;QR=1488;RO=39;RPL=0;RPP=24.725;RPPR=87.6977;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=35;SRP=56.5176;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:341:0:0:0,-2.70927,-31.045 0/1:21:14,7:14:526:7:270:-18.3439,0,-41.3597 0/1:19:16,3:16:621:3:117:-5.19081,0,-50.5105 dDocent_Contig_258 115 . G T 39.5915 . AB=0.12987;ABP=94.6352;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=156;DPB=156;DPRA=1.94937;EPP=24.725;EPPR=317.874;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=319;QR=4939;RO=145;RPL=0;RPP=24.725;RPPR=317.874;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=317.874;SRR=145;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1130:0:0:0,-9.93399,-102.006 0/0:46:46,0:46:1560:0:0:0,-13.8474,-140.69 0/1:77:66,10:66:2249:10:319:-5.78301,0,-179.439 dDocent_Contig_259 47 . A T 36.749 . AB=0.113636;ABP=60.0608;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=242;DPB=242;DPRA=0;EPP=24.725;EPPR=43.7816;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.2;PAIREDR=0.672414;PAO=0;PQA=0;PQR=0;PRO=0;QA=400;QR=8649;RO=232;RPL=0;RPP=24.725;RPPR=506.792;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=149;SRP=43.7816;SRR=83;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:70:68,2:68:2547:2:82:0,-13.2924,-221.643 0/0:128:125,3:125:4651:3:114:0,-27.9011,-408.005 0/1:44:39,5:39:1451:5:204:-5.49871,0,-117.621 dDocent_Contig_260 66 . C T 78.941 . AB=0.25;ABP=11.6962;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=54;DPB=54;DPRA=0.842105;EPP=11.6962;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=1802;RO=50;RPL=4;RPP=11.6962;RPPR=111.584;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:12,4:12:459:4:154:-9.41698,0,-36.8436 0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6772 0/0:21:21,0:21:739:0:0:0,-6.32163,-66.8284 dDocent_Contig_262 53 . G A 921.567 . AB=0.119287;ABP=1132.29;AC=3;AF=0.5;AN=6;AO=107;CIGAR=1X;DP=897;DPB=897;DPRA=0;EPP=235.358;EPPR=1716.3;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.0374;MQMR=60;NS=3;NUMALT=1;ODDS=5.55112e-17;PAIRED=0.859813;PAIREDR=0.996198;PAO=0;PQA=0;PQR=0;PRO=0;QA=4078;QR=30366;RO=789;RPL=107;RPP=235.358;RPPR=1716.3;RPR=0;RUN=1;SAF=107;SAP=235.358;SAR=0;SRF=789;SRP=1716.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:332:295,37:295:11274:37:1401:-26.424,0,-914.179 0/1:197:173,23:173:6608:23:871:-19.3375,0,-535.421 0/1:368:321,47:321:12484:47:1806:-51.9181,0,-1012.08 dDocent_Contig_263 127 . G T 164.71 . AB=0.229508;ABP=41.7764;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=61;DPB=61;DPRA=0;EPP=8.59409;EPPR=80.6751;GTI=0;LEN=1;MEANALT=1;MQM=40.7857;MQMR=59.7872;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.93617;PAO=0;PQA=0;PQR=0;PRO=0;QA=506;QR=1574;RO=47;RPL=0;RPP=33.4109;RPPR=105.07;RPR=14;RUN=1;SAF=10;SAP=8.59409;SAR=4;SRF=3;SRP=80.6751;SRR=44;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:9,4:9:315:4:125:-7.60202,0,-24.7743 0/1:18:13,5:13:418:5:186:-10.1993,0,-32.5126 0/1:30:25,5:25:841:5:195:-4.19155,0,-66.9619 dDocent_Contig_265 78 . C G 59.151 . AB=0.285714;ABP=8.59409;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=51;DPB=51;DPRA=0.756757;EPP=11.6962;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.5319;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.957447;PAO=0;PQA=0;PQR=0;PRO=0;QA=126;QR=1492;RO=47;RPL=4;RPP=11.6962;RPPR=105.07;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:10,4:10:296:4:126:-7.43798,0,-22.7173 0/0:15:15,0:15:479:0:0:0,-4.51545,-43.418 0/0:22:22,0:22:717:0:0:0,-6.62266,-64.7666 dDocent_Contig_266 10 . A C 1875.29 . AB=0.628866;ABP=17.0017;AC=3;AF=0.5;AN=6;AO=61;CIGAR=1X;DP=97;DPB=97;DPRA=0;EPP=135.47;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2459;QR=1423;RO=36;RPL=0;RPP=135.47;RPPR=81.1833;RPR=61;RUN=1;SAF=61;SAP=135.47;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:10,28:10:388:28:1131:-90.6333,0,-23.8317 0/1:16:5,11:5:190:11:439:-35.0487,0,-12.6501 0/1:43:21,22:21:845:22:889:-67.3698,0,-63.4192 dDocent_Contig_267 13 . T C 99.5289 . AB=0.222222;ABP=21.1059;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=3X2M1X;DP=35;DPB=35;DPRA=1.6875;EPP=16.0391;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1.5;MQM=58.3333;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=1090;RO=28;RPL=0;RPP=16.0391;RPPR=63.8115;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:8:8,0:8:315:0:0:0,-2.40824,-28.7159 0|1:12:9,2:9:340:2:77:-3.67203,0,-27.3394 0|1:15:11,4:11:435:4:155:-9.80066,0,-34.9904 dDocent_Contig_268 40 . T G 13755.5 . AB=0.706587;ABP=126.823;AC=5;AF=0.833334;AN=6;AO=413;CIGAR=1X3M;DP=526;DPB=526;DPRA=0;EPP=899.828;EPPR=87.6977;GTI=0;LEN=1;MEANALT=4.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.760291;PAIREDR=0.769231;PAO=0;PQA=0;PQR=0;PRO=0;QA=15986;QR=1425;RO=39;RPL=0;RPP=899.828;RPPR=87.6977;RPR=413;RUN=1;SAF=413;SAP=899.828;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:193:17,25,7,143:17:622:25,7,143:922,274,5398:-461.753,-391.472,-434.774,-444.34,-419.769,-493.061,-24.5712,0,-52.8642,-32.3496 0|1:141:22,14,10,93:22:803:14,10,93:528,362,3599:-288.971,-252.326,-313.71,-266.053,-288.383,-328.641,0,-22.327,-36.0583,-37.6038 1|1:192:0,11,2,177:0:0:11,2,177:420,76,6989:-628.349,-593.89,-590.579,-622.117,-587.658,-621.514,-53.2823,-18.7998,-47.0488,0 dDocent_Contig_269 99 . N C 69.8582 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X2I8X1M1X3M1X;DP=2;DPB=4.93333;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=57;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=226;PRO=6;QA=77;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:77:-6.98474,-0.60206,0 .:.:.:.:.:.:.:. dDocent_Contig_270 75 . C G 1346.68 . AB=0.78125;ABP=46.9826;AC=3;AF=0.5;AN=6;AO=50;CIGAR=1X;DP=64;DPB=64;DPRA=0;EPP=111.584;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1752;QR=499;RO=14;RPL=50;RPP=111.584;RPPR=33.4109;RPR=0;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:2,16:2:70:16:565:-45.7586,0,-1.22858 0/1:20:5,15:5:183:15:544:-43.2762,0,-10.8062 0/1:26:7,19:7:246:19:643:-50.3612,0,-14.6551 dDocent_Contig_272 21 . T C 23540.2 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=691;CIGAR=1X;DP=723;DPB=723;DPRA=0;EPP=1503.5;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.211288;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=27461;QR=1281;RO=32;RPL=0;RPP=1503.5;RPPR=72.4974;RPR=691;RUN=1;SAF=691;SAP=1503.5;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:296:14,282:14:559:282:11147:-951.867,-38.4522,0 1/1:334:11,323:11:447:323:12857:-1115.63,-59.9579,0 1/1:93:7,86:7:275:86:3457:-286.042,-2.88141,0 dDocent_Contig_274 16 . C A 3884.83 . AB=0.501931;ABP=3.01868;AC=3;AF=0.5;AN=6;AO=130;CIGAR=4M1X2M;DP=259;DPB=259;DPRA=0;EPP=285.302;EPPR=211.472;GTI=0;LEN=1;MEANALT=4.66667;MQM=56.0615;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.65625;PAO=0;PQA=0;PQR=0;PRO=0;QA=5180;QR=3761;RO=96;RPL=0;RPP=285.302;RPPR=211.472;RPR=130;RUN=1;SAF=130;SAP=285.302;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:89:48,5,0,30:48:1851:5,0,30:200,0,1184:-81.5181,-79.6388,-230.121,-95.9676,-231.626,-247.955,0,-135.65,-151.979,-142.948 0|1:77:29,6,1,39:29:1152:6,1,39:235,29,1561:-119.235,-108.727,-201.766,-125.929,-201.535,-220.472,0,-75.6412,-92.8448,-83.1396 0|1:93:19,3,8,61:19:758:3,8,61:119,294,2435:-193.253,-189.206,-250.731,-177.094,-229.754,-237.113,0,-52.6828,-40.5812,-44.0884 dDocent_Contig_275 20 . G A 1974.74 . 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AB=0;ABP=0;AC=6;AF=1;AN=6;AO=38;CIGAR=1X;DP=38;DPB=38;DPRA=0;EPP=85.5263;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=938;QR=0;RO=0;RPL=38;RPP=85.5263;RPPR=0;RPR=0;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:10:0,10:0:0:10:229:-20.8363,-3.0103,0 1/1:17:0,17:0:0:17:418:-37.8591,-5.11751,0 1/1:11:0,11:0:0:11:291:-26.4488,-3.31133,0 dDocent_Contig_277 10 . A G 48.0569 . AB=0.142857;ABP=34.0313;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=113;DPB=113;DPRA=0.658824;EPP=11.6962;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=4325;RO=109;RPL=0;RPP=11.6962;RPPR=239.701;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:55:55,0:55:2189:0:0:0,-16.5566,-197.189 0/0:30:30,0:30:1184:0:0:0,-9.0309,-106.841 0/1:28:24,4:24:952:4:163:-6.62959,0,-77.5468 dDocent_Contig_278 14 . G A 369.381 . AB=0.164286;ABP=140.061;AC=2;AF=0.333333;AN=6;AO=26;CIGAR=1X;DP=223;DPB=223;DPRA=0;EPP=59.4686;EPPR=430.79;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1031;QR=7429;RO=197;RPL=0;RPP=59.4686;RPPR=430.79;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=197;SRP=430.79;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:53,9:53:2000:9:354:-13.5568,0,-161.563 0/1:78:64,14:64:2347:14:556:-26.9042,0,-187.937 0/0:83:80,3:80:3082:3:121:0,-13.7053,-266.222 dDocent_Contig_279 74 . T C 1181.26 . AB=0.384;ABP=17.62;AC=3;AF=0.5;AN=6;AO=48;CIGAR=1X;DP=125;DPB=125;DPRA=0;EPP=107.241;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1781;QR=2956;RO=77;RPL=48;RPP=107.241;RPPR=170.214;RPR=0;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:18,16:18:694:16:604:-44.4605,0,-52.5565 0/1:37:25,12:25:964:12:439:-28.7088,0,-75.9339 0/1:54:34,20:34:1298:20:738:-50.4801,0,-100.855 dDocent_Contig_280 9 . T C 26207.6 . AB=0.730308;ABP=541.126;AC=3;AF=0.5;AN=6;AO=853;CIGAR=1X2M;DP=1168;DPB=1168;DPRA=0;EPP=1829.31;EPPR=376.504;GTI=0;LEN=1;MEANALT=4.33333;MQM=59.0692;MQMR=59.6512;NS=3;NUMALT=2;ODDS=0;PAIRED=0.983587;PAIREDR=0.930233;PAO=0;PQA=0;PQR=0;PRO=0;QA=32681;QR=6674;RO=172;RPL=0;RPP=1855.28;RPPR=376.504;RPR=853;RUN=1;SAF=850;SAP=1829.31;SAR=3;SRF=172;SRP=376.504;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:427:64,45,311:64:2472:45,311:1763,11890:-953.437,-851.653,-1041.1,0,-81.9867,-109.401 0|1:320:43,38,228:43:1667:38,228:1459,8736:-703.994,-638.066,-763.547,0,-58.1257,-68.3289 0|1:421:65,24,314:65:2535:24,314:952,12055:-968.853,-916.835,-1117.96,0,-136.773,-113.83 dDocent_Contig_281 71 . C T 138.333 . AB=0.269231;ABP=15.0369;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=58;DPB=58;DPRA=1.625;EPP=18.2106;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=257;QR=1835;RO=51;RPL=7;RPP=18.2106;RPPR=113.755;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:434:0:0:0,-3.61236,-39.3965 0/0:20:20,0:20:719:0:0:0,-6.0206,-65.0361 0/1:26:19,7:19:682:7:257:-15.6572,0,-53.8801 dDocent_Contig_283 13 . T C 86.7268 . AB=0.116279;ABP=112.998;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X;DP=195;DPB=195;DPRA=0;EPP=37.7539;EPPR=391.704;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=639;QR=7146;RO=179;RPL=0;RPP=37.7539;RPPR=391.704;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=179;SRP=391.704;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:86:76,10:76:3008:10:397:-10.1956,0,-244.918 0/0:38:37,1:37:1484:1:40:0,-7.44346,-129.811 0/0:71:66,5:66:2654:5:202:0,-2.81126,-220.413 dDocent_Contig_284 103 . N T 45.5996 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=6X1I2M;DP=2;DPB=2.25;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=27;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=54;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:54:-4.55887,-0.60206,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_285 10 . A T 226.777 . AB=0.15625;ABP=101.541;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=147;DPB=147;DPRA=0;EPP=37.7539;EPPR=287.473;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=645;QR=5225;RO=131;RPL=0;RPP=37.7539;RPPR=287.473;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=131;SRP=287.473;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:44,7:44:1751:7:284:-10.5809,0,-142.464 0/1:45:37,8:37:1462:8:320:-15.6197,0,-118.286 0/0:51:50,1:50:2012:1:41:0,-11.258,-177.175 dDocent_Contig_286 132 . C T 30.8412 . AB=0.1875;ABP=16.582;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=69;DPB=69;DPRA=0.603774;EPP=9.52472;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=101;QR=2273;RO=66;RPL=0;RPP=9.52472;RPPR=146.327;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=146.327;SRR=66;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:13,3:13:458:3:101:-4.60665,0,-36.7382 0/0:26:26,0:26:871:0:0:0,-7.82678,-78.6942 0/0:27:27,0:27:944:0:0:0,-8.12781,-85.2732 dDocent_Contig_287 10 . A C 101.155 . AB=0.227273;ABP=17.2236;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=83;DPB=83;DPRA=0.721311;EPP=13.8677;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.897436;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=3097;RO=78;RPL=0;RPP=13.8677;RPPR=172.385;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:36:36,0:36:1435:0:0:0,-10.8371,-129.405 0/1:22:17,5:17:679:5:202:-11.9394,0,-54.8184 0/0:25:25,0:25:983:0:0:0,-7.52575,-88.7657 dDocent_Contig_288 15 . A G 1261.82 . AB=0.210345;ABP=214.347;AC=3;AF=0.5;AN=6;AO=61;CIGAR=1X;DP=290;DPB=290;DPRA=0;EPP=135.47;EPPR=498.106;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2424;QR=9010;RO=228;RPL=0;RPP=135.47;RPPR=498.106;RPR=61;RUN=1;SAF=61;SAP=135.47;SAR=0;SRF=228;SRP=498.106;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:86:63,23:63:2423:23:917:-56.9497,0,-192.337 0/1:107:89,18:89:3554:18:714:-32.3772,0,-287.682 0/1:97:76,20:76:3033:20:793:-42.3777,0,-243.745 dDocent_Contig_289 12 . T C 4603.22 . AB=0.137026;ABP=395.528;AC=0;AF=0;AN=6;AO=47;CIGAR=1X3M1X2M;DP=343;DPB=343;DPRA=0;EPP=105.07;EPPR=105.07;GTI=0;LEN=1;MEANALT=7.33333;MQM=59.7447;MQMR=60;NS=3;NUMALT=6;ODDS=1.11022e-16;PAIRED=0.978723;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1848;QR=1833;RO=47;RPL=0;RPP=105.07;RPPR=105.07;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:129:13,17,47,13,0,5,29:13:494:17,47,13,0,5,29:662,1826,513,0,202,1135:-198.917,-148.427,-183.819,-52.8066,-38.9124,-79.1669,-160.622,-146.728,-51.1068,-197.218,-202.83,-188.937,-93.3153,-201.131,-243.34,-186.176,-172.283,-76.661,-184.477,-226.686,-225.181,-109.515,-95.6214,0,-107.816,-150.025,-133.37,-141.295 0|0:95:17,14,27,6,0,9,15:17:666:14,27,6,0,9,15:551,1033,238,0,367,578:-79.6385,-39.471,-90.0223,0,-9.48034,-46.6367,-65.1638,-74.6445,-35.1725,-118.123,-84.756,-94.2367,-54.7645,-119.929,-139.521,-54.4751,-63.9558,-24.4837,-89.6488,-109.241,-106.532,-37.3071,-46.7876,-7.31677,-72.4802,-92.0723,-61.7916,-87.5568 0|0:119:17,16,60,10,6,3,6:17:673:16,60,10,6,3,6:635,2341,393,241,123,238:-187.289,-140.134,-190.708,0,-3.11683,-37.3272,-160.083,-163.2,-23.0654,-212.462,-172.547,-175.665,-35.5295,-195.613,-226.131,-182.254,-185.371,-45.236,-205.32,-217.785,-236.741,-172.817,-175.934,-35.7988,-195.882,-208.347,-218.054,-226.4 dDocent_Contig_290 7 . T A 92.3434 . AB=0.134328;ABP=80.8268;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=166;DPB=166;DPRA=0;EPP=31.2394;EPPR=335.246;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=50.4248;NS=3;NUMALT=1;ODDS=0;PAIRED=0.846154;PAIREDR=0.633987;PAO=0;PQA=0;PQR=0;PRO=0;QA=490;QR=5787;RO=153;RPL=0;RPP=31.2394;RPPR=335.246;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=153;SRP=335.246;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:63:61,2:61:2290:2:73:0,-12.0342,-191.596 0/0:36:34,2:34:1268:2:74:0,-3.81165,-101.997 0/1:67:58,9:58:2229:9:343:-11.0582,0,-150.836 dDocent_Contig_291 98 . N A 57.951 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=61;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:61:-5.79402,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_292 108 . T C 70.2153 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=2X1D3M;DP=3;DPB=2.5;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=28.6667;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=83;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:3:0,3:0:0:3:83:-7.02099,-0.90309,0 .:.:.:.:.:.:.:. dDocent_Contig_293 72 . G A 166.129 . AB=0.307692;ABP=11.3621;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=65;DPB=65;DPRA=1.33333;EPP=20.3821;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=288;QR=2067;RO=57;RPL=8;RPP=20.3821;RPPR=126.784;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:30,0:30:1063:0:0:0,-9.0309,-95.962 0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1414 0/1:26:18,8:18:684:8:288:-18.4368,0,-54.0643 dDocent_Contig_295 24 . G A 253.378 . AB=0.255814;ABP=25.2805;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1M2D3M1X1M1X2M3I6M;DP=89;DPB=90;DPRA=1.86957;EPP=26.8965;EPPR=136.541;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.917808;PAO=0;PQA=0;PQR=0;PRO=0;QA=438;QR=2850;RO=73;RPL=0;RPP=26.8965;RPPR=161.528;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=70;SRP=136.541;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:29:27,0:27:1053:0:0:0,-8.12781,-94.7281 0|0:17:16,0:16:629:0:0:0,-4.81648,-56.5758 0|1:43:30,11:30:1168:11:438:-27.1617,0,-92.8104 dDocent_Contig_296 107 . N A 81.194 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=87;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:87:-8.11885,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_297 83 . C T 32.5396 . AB=0.117647;ABP=46.1843;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X6M;DP=71;DPB=71;DPRA=1.30769;EPP=11.6962;EPPR=137.642;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=141;QR=2212;RO=62;RPL=4;RPP=11.6962;RPPR=137.642;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:34:28,2,4,0:28:1015:2,4,0:72,141,0:-3.04653,-5.59805,-87.8775,0,-77.0004,-81.671,-11.4754,-88.4795,-82.8751,-94.3543 0|0:11:9,0,0,2:9:320:0,0,2:0,0,74:-3.71455,-6.42382,-32.4899,-6.42382,-32.4899,-32.4899,0,-26.4332,-26.4332,-25.8312 0|0:26:25,0,0,1:25:877:0,0,1:0,0,34:0,-7.52575,-78.9069,-7.52575,-78.9069,-78.9069,-4.42787,-76.1493,-76.1493,-75.8483 dDocent_Contig_299 10 . T A 3118.38 . AB=0.0436893;ABP=375.576;AC=0;AF=0;AN=6;AO=9;CIGAR=1X2M1X1M;DP=296;DPB=296;DPRA=0;EPP=22.5536;EPPR=194.1;GTI=0;LEN=1;MEANALT=8;MQM=42.4444;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0.222222;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=346;QR=3379;RO=88;RPL=0;RPP=22.5536;RPPR=194.1;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:108:31,2,8,19,38:31:1197:2,8,19,38:78,311,728,1438:-108.552,-111.472,-209.181,-92.3254,-184.225,-188.229,-58.1345,-150.035,-130.888,-150.727,0,-91.8999,-72.7535,-38.5634,-86.8726 0|0:98:27,7,3,10,44:27:1021:7,3,10,44:268,114,383,1662:-128.099,-116.711,-198.298,-126.877,-191.056,-209.669,-104.793,-168.972,-179.139,-185.478,0,-64.1827,-74.3473,-52.2627,-70.4513 0|0:90:30,0,11,13,29:30:1161:0,11,13,29:0,424,506,1095:-80.71,-89.7409,-185.114,-54.9226,-150.297,-146.985,-48.1516,-143.526,-108.708,-139.613,0,-95.373,-60.5557,-53.7849,-86.6431 dDocent_Contig_301 17 . T A 1713.25 . AB=0.0485075;ABP=477.526;AC=0;AF=0;AN=6;AO=13;CIGAR=1X2M;DP=525;DPB=525;DPRA=0;EPP=31.2394;EPPR=763.026;GTI=0;LEN=1;MEANALT=6;MQM=18.4615;MQMR=40;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=229;QR=13449;RO=350;RPL=0;RPP=31.2394;RPPR=763.026;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=350;SRP=763.026;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:122:88,0,10,4,14:88:3381:0,10,4,14:0,388,71,557:-15.6523,-42.1429,-301.532,-15.7942,-275.184,-272.174,-37.8633,-297.236,-270.888,-296.032,0,-259.413,-233.065,-255.117,-255.199 0|0:146:77,8,14,9,32:77:2945:8,14,9,32:298,530,158,1278:-71.7606,-71.9295,-295.683,-59.1773,-262.33,-281.123,-85.6002,-288.739,-275.985,-309.036,0,-203.178,-190.425,-216.836,-216.553 0|0:257:185,2,15,0,48:185:7123:2,15,0,48:78,582,0,1925:-89.4347,-139.164,-684.494,-103.065,-643.035,-644.481,-145.125,-685.096,-648.996,-691.057,0,-539.999,-503.899,-545.96,-531.511 dDocent_Contig_303 29 . T C 2622.85 . AB=0.661417;ABP=31.7524;AC=3;AF=0.5;AN=6;AO=84;CIGAR=1X;DP=127;DPB=127;DPRA=0;EPP=185.414;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.988095;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3391;QR=1712;RO=43;RPL=0;RPP=185.414;RPPR=96.3836;RPR=84;RUN=1;SAF=84;SAP=185.414;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:12,33:12:481:33:1325:-105.969,0,-30.0934 0/1:30:9,21:9:363:21:851:-67.8704,0,-24.0029 0/1:52:22,30:22:868:30:1215:-93.9679,0,-62.7739 dDocent_Contig_305 22 . T C 2605.97 . AB=0.59375;ABP=7.89611;AC=4;AF=0.666667;AN=6;AO=80;CIGAR=2M1X2M;DP=106;DPB=112.4;DPRA=0;EPP=176.728;EPPR=31.2394;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3102;QR=500;RO=13;RPL=0;RPP=176.728;RPPR=31.2394;RPR=80;RUN=1;SAF=80;SAP=176.728;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:27:6,0,7,14:6:231:0,7,14:0,235,535:-42.1299,-43.9361,-62.907,-24.9203,-43.8881,-41.7809,-0.0151611,-19.0047,0,-14.7903 0|1:37:7,5,0,24:7:269:5,0,24:189,0,957:-76.7177,-63.3369,-83.9113,-78.8249,-85.4164,-100.906,0,-6.5958,-22.0841,-14.8594 1|1:42:0,0,0,42:0:0:0,0,42:0,0,1610:-145.151,-145.151,-145.151,-145.151,-145.151,-145.151,-12.6433,-12.6433,-12.6433,0 dDocent_Contig_306 9 . G A 296.504 . AB=0.0864865;ABP=277.778;AC=2;AF=0.333333;AN=6;AO=19;CIGAR=1M1X;DP=267;DPB=267;DPRA=0;EPP=36.0395;EPPR=377.731;GTI=0;LEN=1;MEANALT=3.33333;MQM=51.8947;MQMR=47.6715;NS=3;NUMALT=3;ODDS=0;PAIRED=0.947368;PAIREDR=0.63285;PAO=0;PQA=0;PQR=0;PRO=0;QA=722;QR=7790;RO=207;RPL=0;RPP=44.2683;RPPR=452.505;RPR=19;RUN=1;SAF=18;SAP=36.0395;SAR=1;SRF=198;SRP=377.731;SRR=9;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:96:75,8,8,4:75:2815:8,8,4:301,289,156:-0.71809,-13.9264,-214.782,0,-193.937,-200.956,-10.4795,-204.396,-190.57,-212.621 0|0:82:71,1,5,3:71:2653:1,5,3:39,188,117:0,-18.1737,-202.212,-6.19135,-187.36,-189.049,-11.7337,-192.892,-180.934,-195.184 0|1:89:61,0,16,12:61:2322:0,16,12:0,619,449:-31.4669,-49.8297,-223.238,0,-173.416,-168.6,-14.8782,-188.277,-138.454,-184.665 dDocent_Contig_307 13 . G C 197.553 . AB=0.2;ABP=46.0055;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=92;DPB=92;DPRA=0;EPP=29.068;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=475;QR=3206;RO=80;RPL=0;RPP=29.068;RPPR=176.728;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:36,1:36:1441:1:41:0,-7.04354,-125.849 0/1:28:20,8:20:787:8:319:-20.6482,0,-62.7155 0/1:27:24,3:24:978:3:115:-2.59457,0,-80.1874 dDocent_Contig_308 107 . N T 60.7892 . AB=0;ABP=0;AC=4;AF=0.666667;AN=6;AO=3;CIGAR=1X;DP=4;DPB=4;DPRA=1.5;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=56;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:25:-2.37497,-0.60206,0 0/0:1:0,0:0:0:0:0:0,0,0 1/1:1:0,1:0:0:1:31:-3.09945,-0.30103,0 dDocent_Contig_309 30 . T C 206.975 . AB=0.168539;ABP=87.9417;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=112;DPB=112;DPRA=1.93478;EPP=35.5824;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=559;QR=3735;RO=97;RPL=0;RPP=35.5824;RPPR=213.643;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:32,6:32:1249:6:226:-9.2599,0,-101.253 0/0:23:23,0:23:851:0:0:0,-6.92369,-76.9066 0/1:51:42,9:42:1635:9:333:-14.9605,0,-132.045 dDocent_Contig_310 16 . A G 81.9025 . AB=0.172414;ABP=30.0414;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=83;DPB=83;DPRA=1.07407;EPP=13.8677;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=3079;RO=78;RPL=0;RPP=13.8677;RPPR=172.385;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:810:0:0:0,-6.32163,-73.2116 0/1:29:24,5:24:953:5:204:-10.0142,0,-77.3417 0/0:33:33,0:33:1316:0:0:0,-9.93399,-118.698 dDocent_Contig_311 108 . T C 1059.43 . AB=0.458716;ABP=4.62396;AC=3;AF=0.5;AN=6;AO=50;CIGAR=1X;DP=109;DPB=109;DPRA=0;EPP=111.584;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1593;QR=1919;RO=59;RPL=0;RPP=111.584;RPPR=131.127;RPR=50;RUN=1;SAF=0;SAP=111.584;SAR=50;SRF=0;SRP=131.127;SRR=59;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:24,11:24:759:11:342:-20.548,0,-58.0687 0/1:41:13,28:13:416:28:905:-69.4064,0,-25.4075 0/1:33:22,11:22:744:11:346:-21.5112,0,-57.3422 dDocent_Contig_312 49 . T G 1583.92 . AB=0.55;ABP=5.18177;AC=3;AF=0.5;AN=6;AO=55;CIGAR=1X;DP=100;DPB=100;DPRA=0;EPP=122.441;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2145;QR=1806;RO=45;RPL=0;RPP=122.441;RPPR=100.727;RPR=55;RUN=1;SAF=55;SAP=122.441;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:12,8:12:477:8:317:-22.8755,0,-37.2609 0/1:38:15,23:15:604:23:922:-71.8464,0,-43.2597 0/1:42:18,24:18:725:24:906:-69.1934,0,-52.9309 dDocent_Contig_313 118 . A G 42.3753 . AB=0.243243;ABP=24.1968;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X1M1X1M1X;DP=65;DPB=65;DPRA=0.660714;EPP=22.5536;EPPR=120.27;GTI=0;LEN=1;MEANALT=1.5;MQM=23.2222;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=295;QR=1754;RO=54;RPL=0;RPP=22.5536;RPPR=120.27;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=120.27;SRR=54;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:28:27,0:27:867:0:0:0,-8.12781,-78.2515 0|1:24:19,5:19:621:5:161:-2.94878,0,-48.9771 0|1:13:8,4:8:266:4:134:-4.79539,0,-20.5177 dDocent_Contig_314 204 . T C 33.8221 . AB=0.134615;ABP=63.3104;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=119;DPB=119;DPRA=1.55224;EPP=18.2106;EPPR=244.044;GTI=0;LEN=1;MEANALT=1;MQM=55.4286;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.90991;PAO=0;PQA=0;PQR=0;PRO=0;QA=225;QR=4053;RO=111;RPL=7;RPP=18.2106;RPPR=244.044;RPR=0;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=244.044;SRR=111;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:45,7:45:1637:7:225:-4.90491,0,-131.96 0/0:25:25,0:25:919:0:0:0,-7.52575,-83.0304 0/0:42:41,0:41:1497:0:0:0,-12.3422,-134.67 dDocent_Contig_317 33 . G A 396.712 . AB=0.295082;ABP=25.259;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X;DP=61;DPB=61;DPRA=0;EPP=42.0968;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=694;QR=1670;RO=43;RPL=0;RPP=42.0968;RPPR=96.3836;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:25,8:25:961:8:311:-18.4182,0,-76.8532 0/1:16:11,5:11:437:5:182:-11.9178,0,-34.868 0/1:12:7,5:7:272:5:201:-14.8582,0,-21.2308 dDocent_Contig_318 109 . A G 352.9 . 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AB=0.10723;ABP=1652.5;AC=3;AF=0.5;AN=6;AO=132;CIGAR=1X;DP=1231;DPB=1231;DPRA=0;EPP=289.645;EPPR=2352.67;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.553;MQMR=59.9399;NS=3;NUMALT=1;ODDS=0;PAIRED=0.772727;PAIREDR=0.619308;PAO=0;PQA=0;PQR=0;PRO=0;QA=5164;QR=43432;RO=1098;RPL=0;RPP=289.645;RPPR=2387.29;RPR=132;RUN=1;SAF=132;SAP=289.645;SAR=0;SRF=1094;SRP=2352.67;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:499:447,52:447:17636:52:1999:-27.9789,0,-1435.45 0/1:379:339,39:339:13414:39:1544:-25.0071,0,-1092.11 0/1:353:312,41:312:12382:41:1621:-39.8587,0,-1007.23 dDocent_Contig_320 8 . T C 402.274 . 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G T 46.3658 . AB=0.444444;ABP=3.25157;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=13.8677;EPPR=18.2106;GTI=0;LEN=1;MEANALT=1;MQM=25.4;MQMR=25;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=182;QR=233;RO=7;RPL=0;RPP=13.8677;RPPR=18.2106;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=7;SRP=18.2106;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:2,1:2:54:1:35:0,-0.303499,-1.39975 0/1:5:2,3:2:73:3:113:-5.95298,0,-4.40747 0/1:4:3,1:3:106:1:34:-2.09859,0,-5.79941 dDocent_Contig_344 9 . T A 21826.6 . AB=0.282097;ABP=931.371;AC=6;AF=1;AN=6;AO=635;CIGAR=1X8M;DP=2251;DPB=2311.56;DPRA=0;EPP=662.047;EPPR=45.5551;GTI=0;LEN=1;MEANALT=46.6667;MQM=41.3638;MQMR=56.2222;NS=3;NUMALT=5;ODDS=0;PAIRED=0.559055;PAIREDR=0.703704;PAO=2.16667;PQA=78.6667;PQR=78.6667;PRO=2.16667;QA=20170;QR=1022;RO=27;RPL=0;RPP=1381.9;RPPR=61.6401;RPR=635;RUN=1;SAF=537;SAP=662.047;SAR=98;SRF=25;SRP=45.5551;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:474:0,18,21,74,102,97:0:0:18,21,74,102,97:476,647,2385,2544,2954:-399.111,-365.153,-359.734,-352.448,-318.489,-346.126,-221.772,-187.813,-175.108,-199.496,-224.178,-190.22,-177.515,-46.8391,-193.473,-177.343,-143.384,-130.679,0,-2.41096,-148.143 1|1:573:11,31,24,67,116,154:11:400:31,24,67,116,154:896,760,2250,3626,4883:-604.568,-541.815,-564.748,-551.676,-517.877,-576.717,-438.838,-405.039,-414.9,-450.934,-342.633,-308.834,-318.695,-205.856,-339.979,-232.982,-199.183,-209.044,-96.2038,0,-218.889 1|1:1204:16,83,122,133,140,384:16:622:83,122,133,140,384:2276,3874,4116,3603,12333:-1184.5,-1027.09,-1053.08,-908.205,-796.956,-922.458,-890.253,-779.004,-660.119,-901.195,-942.386,-831.138,-712.252,-694.301,-951.22,-248.089,-136.84,-17.9518,0,-52.1364,-183.473 dDocent_Contig_346 108 . N T 3474.98 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=169;CIGAR=1X;DP=169;DPB=169;DPRA=0;EPP=369.989;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=24.9231;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.994083;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=5854;QR=0;RO=0;RPL=169;RPP=369.989;RPPR=0;RPR=0;RUN=1;SAF=169;SAP=369.989;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:34:0,34:0:0:34:1164:-68.5141,-10.235,0 1/1:49:0,49:0:0:49:1705:-113.326,-14.7505,0 1/1:86:0,86:0:0:86:2985:-165.181,-25.8886,0 dDocent_Contig_356 1 . N G 72.5443 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=44;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:80:-7.25335,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_357 11 . G A 495.689 . AB=0.129231;ABP=391.076;AC=2;AF=0.333333;AN=6;AO=48;CIGAR=1X;DP=468;DPB=468;DPRA=0;EPP=107.241;EPPR=863.658;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=49.8048;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.909524;PAO=0;PQA=0;PQR=0;PRO=0;QA=1910;QR=16444;RO=420;RPL=0;RPP=107.241;RPPR=915.029;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=414;SRP=863.658;SRR=6;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:140:116,24:116:4549:24:958:-44.3748,0,-338.213 0/0:143:137,6:137:5271:6:240:0,-21.0715,-426.787 0/1:185:167,18:167:6624:18:712:-8.71706,0,-500.844 dDocent_Contig_358 49 . G A 248.713 . AB=0.235294;ABP=34.0496;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=206;DPB=206;DPRA=0.658065;EPP=29.068;EPPR=424.276;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=460;QR=7453;RO=194;RPL=0;RPP=29.068;RPPR=424.276;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=194;SRP=424.276;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:39,12:39:1517:12:460:-26.3942,0,-121.431 0/0:84:84,0:84:3218:0:0:0,-25.2865,-289.725 0/0:71:71,0:71:2718:0:0:0,-21.3731,-244.766 dDocent_Contig_361 42 . G C 281.126 . AB=0.05;ABP=73.366;AC=0;AF=0;AN=6;AO=2;CIGAR=5M1X1M;DP=117;DPB=112.571;DPRA=0.97561;EPP=7.35324;EPPR=213.643;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=3727;RO=97;RPL=0;RPP=7.35324;RPPR=213.643;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:41:39,0,0:39:1493:0,0:0,0:0,-11.7402,-134.233,-11.7402,-134.233,-134.233 0|0:36:32,4,0:32:1233:4,0:156,0:-3.57987,0,-100.421,-13.2128,-101.626,-114.449 0|0:40:26,11,2:26:1001:11,2:436,81:-28.0518,0,-78.8496,-29.1983,-75.4804,-110.768 dDocent_Contig_363 88 . C A 38.9105 . AB=0.135135;ABP=45.7942;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=117;DPB=117;DPRA=0.925;EPP=13.8677;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=180;QR=3894;RO=112;RPL=5;RPP=13.8677;RPPR=246.215;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:32,5:32:1103:5:180:-5.41387,0,-88.4377 0/0:29:29,0:29:1014:0:0:0,-8.72987,-91.573 0/0:51:51,0:51:1777:0:0:0,-15.3525,-160.217 dDocent_Contig_364 131 . G A 12804.2 . AB=0.262929;ABP=1239.54;AC=3;AF=0.5;AN=6;AO=666;CIGAR=1X;DP=2533;DPB=2533;DPRA=0;EPP=1047.52;EPPR=279.449;GTI=0;LEN=1;MEANALT=2;MQM=58.2523;MQMR=59.6028;NS=3;NUMALT=1;ODDS=0;PAIRED=0.834835;PAIREDR=0.850778;PAO=0;PQA=0;PQR=0;PRO=0;QA=23115;QR=66547;RO=1863;RPL=616;RPP=1047.52;RPPR=279.449;RPR=50;RUN=1;SAF=0;SAP=1449.21;SAR=666;SRF=0;SRP=4048.46;SRR=1863;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:1052:780,269:780:27693:269:9254:-503.104,0,-2163.48 0/1:925:670,255:670:24029:255:8807:-501.838,0,-1866.25 0/1:556:413,142:413:14825:142:5054:-280.997,0,-1164.06 dDocent_Contig_365 19 . G A 38293.8 . AB=0.848077;ABP=1097.47;AC=4;AF=0.666667;AN=6;AO=1449;CIGAR=1X;DP=1703;DPB=1703;DPRA=0;EPP=3114.83;EPPR=359.132;GTI=0;LEN=1;MEANALT=3;MQM=40.3251;MQMR=41.872;NS=3;NUMALT=1;ODDS=0;PAIRED=0.832298;PAIREDR=0.987805;PAO=0;PQA=0;PQR=0;PRO=0;QA=57504;QR=6378;RO=164;RPL=0;RPP=3149.47;RPPR=359.132;RPR=1449;RUN=1;SAF=1445;SAP=3114.83;SAR=4;SRF=164;SRP=359.132;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:663:61,567:61:2348:567:22548:-1499.54,-6.98118,0 0/1:494:52,420:52:2029:420:16554:-1106.14,0,-26.8899 0/1:546:51,462:51:2001:462:18402:-1226.58,0,-1.38279 dDocent_Contig_366 21 . C T 7681.07 . AB=0.0525362;ABP=963.006;AC=0;AF=0;AN=6;AO=29;CIGAR=1X1M1X;DP=552;DPB=552;DPRA=0;EPP=65.983;EPPR=150.67;GTI=0;LEN=1;MEANALT=7;MQM=31.3793;MQMR=40.7059;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.573529;PAO=0;PQA=0;PQR=0;PRO=0;QA=1113;QR=2622;RO=68;RPL=0;RPP=65.983;RPPR=150.67;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:224:30,12,149,16:30:1128:12,149,16:448,4620,621:-307.994,-287.809,-353.809,0,-40.3789,-24.7368,-267.364,-307.761,-19.9226,-332.161 0|0:141:10,5,86,24:10:399:5,86,24:201,2351,938:-218.386,-209.173,-227.648,-56.069,-63.8139,-50.1452,-145.382,-153.139,0,-158.138 0|0:187:28,12,115,26:28:1095:12,115,26:464,3333,1032:-247.249,-226.764,-291.262,-15.7961,-54.9781,-49.2659,-171.806,-211.005,0,-232.093 dDocent_Contig_368 107 . N A 400.385 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=29.068;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=428;QR=0;RO=0;RPL=0;RPP=29.068;RPPR=0;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:143:-13.2214,-1.20412,0 1/1:2:0,2:0:0:2:68:-6.45793,-0.60206,0 1/1:6:0,6:0:0:6:217:-19.8816,-1.80618,0 dDocent_Contig_372 30 . T C 38669.1 . AB=0.883235;ABP=1958.65;AC=3;AF=0.5;AN=6;AO=1354;CIGAR=1X;DP=1533;DPB=1533;DPRA=0;EPP=2917.18;EPPR=300.564;GTI=0;LEN=1;MEANALT=3;MQM=47.5916;MQMR=53.4681;NS=3;NUMALT=1;ODDS=0;PAIRED=0.626292;PAIREDR=0.758865;PAO=0;PQA=0;PQR=0;PRO=0;QA=53978;QR=5640;RO=141;RPL=0;RPP=2943.18;RPPR=309.188;RPR=1354;RUN=1;SAF=1351;SAP=2917.18;SAR=3;SRF=140;SRP=300.564;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:557:48,490:48:1886:490:19442:-1434.87,0,-1.88445 0/1:409:37,362:37:1493:362:14418:-987.433,0,-9.16468 0/1:567:56,502:56:2261:502:20118:-1449.92,0,-30.6414 dDocent_Contig_374 61 . C A 391.674 . AB=0.22093;ABP=61.1856;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=1X;DP=153;DPB=153;DPRA=0;EPP=46.4397;EPPR=291.816;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=795;QR=5250;RO=133;RPL=20;RPP=46.4397;RPPR=291.816;RPR=0;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=133;SRP=291.816;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:67:66,1:66:2589:1:41:0,-16.0744,-229.056 0/1:46:38,8:38:1519:8:317:-15.0481,0,-123.108 0/1:40:29,11:29:1142:11:437:-27.6422,0,-91.0232 dDocent_Contig_380 10 . A C 30.6577 . AB=0.15;ABP=24.2907;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=78;DPB=78;DPRA=0.689655;EPP=3.73412;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=2987;RO=75;RPL=0;RPP=9.52472;RPPR=165.871;RPR=3;RUN=1;SAF=2;SAP=3.73412;SAR=1;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1080:0:0:0,-8.12781,-97.4905 0/1:20:17,3:17:672:3:117:-4.88931,0,-54.7917 0/0:31:31,0:31:1235:0:0:0,-9.33193,-111.421 dDocent_Contig_382 12 . G A 16606.1 . 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AB=0;ABP=0;AC=6;AF=1;AN=6;AO=71;CIGAR=2X;DP=71;DPB=149;DPRA=0;EPP=157.185;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=38.3521;MQMR=0;NS=3;NUMALT=1;ODDS=5.55112e-17;PAIRED=0.816901;PAIREDR=0;PAO=156;PQA=4989;PQR=0;PRO=0;QA=2074;QR=0;RO=0;RPL=71;RPP=157.185;RPPR=0;RPR=0;RUN=1;SAF=71;SAP=157.185;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:16:0,16:0:0:16:473:-42.5134,-4.81648,0 1|1:15:0,15:0:0:15:433:-33.1661,-4.51545,0 1|1:40:0,40:0:0:40:1168:-69.4538,-12.0412,0 dDocent_Contig_385 7 . T A 41850 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=2043;CIGAR=1X4M;DP=2651;DPB=2650.6;DPRA=0;EPP=4165.73;EPPR=126.784;GTI=0;LEN=1;MEANALT=14.6667;MQM=30.2643;MQMR=57.807;NS=3;NUMALT=2;ODDS=0;PAIRED=0.0401371;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=52914;QR=2160;RO=57;RPL=0;RPP=4439.33;RPPR=126.784;RPR=2043;RUN=1;SAF=2011;SAP=4165.73;SAR=32;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:926:15,93,722:15:569:93,722:3559,18799:-1509.22,-1347,-1365.66,-170.678,-50.6203,0 1|1:869:14,74,683:14:525:74,683:2826,17746:-1420.56,-1289.54,-1304.87,-167.993,-70.4021,0 1|1:856:28,94,638:28:1066:94,638:3623,16369:-1254.74,-1108.48,-1167.58,-104.653,-37.4016,0 dDocent_Contig_387 7 . G A 38969.9 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=1988;CIGAR=1X;DP=2041;DPB=2041;DPRA=0;EPP=4139.42;EPPR=84.9501;GTI=0;LEN=1;MEANALT=1.66667;MQM=25.4572;MQMR=40.1224;NS=3;NUMALT=1;ODDS=0;PAIRED=0.0427565;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=75473;QR=1696;RO=49;RPL=0;RPP=4319.9;RPPR=109.412;RPR=1988;RUN=1;SAF=1967;SAP=4139.42;SAR=21;SRF=46;SRP=84.9501;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:801:20,781:20:693:781:29531:-1510.08,-189.539,0 1/1:577:17,557:17:602:557:21101:-1063.95,-137.862,0 1/1:663:12,650:12:401:650:24841:-1322.47,-171.025,0 dDocent_Contig_390 8 . T C 1332.71 . AB=0.320197;ABP=60.0141;AC=2;AF=0.333334;AN=6;AO=65;CIGAR=2X3M2X;DP=203;DPB=203;DPRA=0;EPP=144.156;EPPR=92.0407;GTI=0;LEN=1;MEANALT=8;MQM=23.7538;MQMR=60;NS=3;NUMALT=6;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2470;QR=1609;RO=41;RPL=0;RPP=144.156;RPPR=92.0407;RPR=65;RUN=1;SAF=65;SAP=144.156;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:99:24,6,8,3,40,0,10:24:943:6,8,3,40,0,10:224,264,39,1518,0,380:-64.749,-69.4771,-145.269,-52.7819,-127.889,-127.978,-70.1559,-145.258,-128.568,-146.852,0,-75.1327,-58.4341,-75.8047,-65.576,-71.9737,-147.075,-130.386,-147.755,-77.6172,-149.573,-40.7965,-115.908,-99.2172,-116.588,-46.4473,-118.406,-115.395 0|0:44:10,0,6,1,11,0,13:10:388:0,6,1,11,0,13:0,162,30,424,0,510:-38.9788,-41.9891,-73.8867,-30.8516,-62.7489,-60.9427,-39.7214,-71.6195,-60.4821,-71.3184,-23.4736,-55.3661,-44.241,-53.1002,-52.0548,-41.9891,-73.8867,-62.7489,-71.6195,-55.3661,-73.8867,0,-31.924,-20.7857,-29.6561,-13.4087,-31.924,-28.0106 1|0:60:7,0,6,19,14,3,10:7:278:0,6,19,14,3,10:0,202,411,528,103,403:-35.0659,-37.1731,-60.0765,-22.4178,-45.3239,-43.5177,-10.3414,-33.246,-18.498,-27.5265,-17.0116,-39.9166,-25.1663,-13.123,-35.7022,-28.8091,-51.714,-36.9607,-24.8847,-31.5546,-50.8109,-3.92253,-26.834,-12.077,0,-6.67072,-18.469,-23.8237 dDocent_Contig_392 12 . G T 441.555 . AB=0.156863;ABP=211.642;AC=1;AF=0.166667;AN=6;AO=43;CIGAR=1X;DP=540;DPB=540;DPRA=0;EPP=96.3836;EPPR=1073.55;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.98783;PAO=0;PQA=0;PQR=0;PRO=0;QA=1588;QR=19325;RO=493;RPL=0;RPP=96.3836;RPPR=1073.55;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=493;SRP=1073.55;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:223:210,9:210:8188:9:327:0,-36.5424,-706.765 0/0:113:111,2:111:4319:2:71:0,-27.2753,-381.97 0/1:204:172,32:172:6818:32:1190:-45.9794,0,-551.929 dDocent_Contig_393 107 . N A 220.265 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=9.4572;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:7:0,7:0:0:7:241:-22.0264,-2.10721,0 dDocent_Contig_394 19 . T A 167.891 . AB=0.111111;ABP=203.992;AC=1;AF=0.166667;AN=6;AO=17;CIGAR=4X;DP=190;DPB=190;DPRA=2.06757;EPP=13.3567;EPPR=53.1212;GTI=0;LEN=1;MEANALT=2.5;MQM=45.3529;MQMR=58.3333;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.25;PAO=0;PQA=0;PQR=0;PRO=0;QA=654;QR=5953;RO=156;RPL=0;RPP=39.9253;RPPR=333.13;RPR=17;RUN=1;SAF=13;SAP=13.3567;SAR=4;SRF=109;SRP=56.5176;SRR=47;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:64:44,7,5,8:44:1700:7,5,8:277,195,320:-13.1207,-4.5858,-141.955,-10.3432,-128.039,-148.318,0,-117.7,-123.462,-137.077 0|1:89:77,10,0,0:77:2945:10,0,0:377,0,0:-7.19131,0,-237.305,-30.3706,-240.316,-270.693,-30.3706,-240.316,-270.693,-270.693 0|0:37:35,0,2,0:35:1308:0,2,0:0,81,0:0,-10.536,-115.487,-3.45238,-108.806,-108.204,-10.536,-115.487,-108.806,-115.487 dDocent_Contig_395 83 . A C 51.6297 . AB=0.111111;ABP=26.6552;AC=0;AF=0;AN=6;AO=2;CIGAR=12M1X6M;DP=39;DPB=38.7895;DPRA=1.8;EPP=7.35324;EPPR=61.6401;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10;QR=840;RO=27;RPL=2;RPP=7.35324;RPPR=61.6401;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:11:6,3,0:6:187:3,0:79,0:-4.52168,0,-14.3062,-6.32786,-15.2092,-21.4191 0|0:18:12,3,2:12:370:3,2:95,10:-4.16273,0,-28.9793,-7.54547,-29.6165,-36.6645 0|0:10:9,0,0:9:283:0,0:0,0:0,-2.70927,-25.4325,-2.70927,-25.4325,-25.4325 dDocent_Contig_396 10 . G A 4562.53 . AB=0.857143;ABP=227.913;AC=4;AF=0.666667;AN=6;AO=263;CIGAR=1X;DP=297;DPB=297;DPRA=0;EPP=574.108;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1.33333;MQM=22.6768;MQMR=59.2258;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.935484;PAO=0;PQA=0;PQR=0;PRO=0;QA=10468;QR=1210;RO=31;RPL=0;RPP=574.108;RPPR=70.3259;RPR=263;RUN=1;SAF=263;SAP=574.108;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:120:16,104:16:613:104:4142:-171.709,0,-19.3761 1/1:94:2,89:2:81:89:3524:-174.152,-20.1118,0 0/1:83:13,70:13:516:70:2802:-113.915,0,-21.6789 dDocent_Contig_397 28 . A T 264.655 . AB=0.189873;ABP=69.0066;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1X;DP=165;DPB=165;DPRA=1.83721;EPP=35.5824;EPPR=328.731;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=575;QR=6001;RO=150;RPL=0;RPP=35.5824;RPPR=328.731;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=150;SRP=328.731;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:44:44,0:44:1752:0:0:0,-13.2453,-157.896 0/0:42:42,0:42:1676:0:0:0,-12.6433,-151.065 0/1:79:64,15:64:2573:15:575:-28.2894,0,-207.918 dDocent_Contig_398 88 . A C 345.605 . AB=0.361702;ABP=10.8184;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=68;DPB=68;DPRA=1.11905;EPP=39.9253;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=573;QR=1682;RO=51;RPL=17;RPP=39.9253;RPPR=113.755;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:16,13:16:489:13:435:-30.7416,0,-35.5726 0/0:21:21,0:21:711:0:0:0,-6.32163,-64.3073 0/1:18:14,4:14:482:4:138:-7.34186,0,-38.2902 dDocent_Contig_399 27 . A G 1061.46 . AB=0.513889;ABP=3.13094;AC=3;AF=0.5;AN=6;AO=37;CIGAR=1X;DP=72;DPB=72;DPRA=0;EPP=83.3548;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1470;QR=1403;RO=35;RPL=0;RPP=83.3548;RPPR=79.0118;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:8,14:8:317:14:550:-43.2173,0,-22.2728 0/1:19:6,13:6:239:13:523:-41.697,0,-16.1649 0/1:31:21,10:21:847:10:397:-26.7543,0,-67.2105 dDocent_Contig_402 9 . G A 9597.36 . AB=0.106109;ABP=841.227;AC=6;AF=1;AN=6;AO=66;CIGAR=1X7M;DP=622;DPB=622;DPRA=0;EPP=50.5195;EPPR=83.705;GTI=0;LEN=1;MEANALT=10;MQM=55.3636;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0.83871;PAO=0;PQA=0;PQR=0;PRO=0;QA=2457;QR=2390;RO=62;RPL=0;RPP=146.327;RPPR=137.642;RPR=66;RUN=1;SAF=52;SAP=50.5195;SAR=14;SRF=55;SRP=83.705;SRR=7;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:204:21,41,21,74,31:21:795:41,21,74,31:1577,812,2880,1162:-291.688,-171.511,-224.338,-231.315,-169.986,-290.164,-61.3295,0,-59.8046,-104.224,-203.262,-141.933,-201.737,-31.7516,-259.1 1|1:200:23,55,34,53,19:23:880:55,34,53,19:2129,1311,1994,692:-248.364,-90.6022,-146.256,-147.635,-55.1595,-209.61,-92.4738,0,-57.0308,-148.73,-200.176,-107.702,-164.734,-109.573,-266.666 1|1:218:18,94,8,68,16:18:715:94,8,68,16:3681,297,2596,603:-425.207,-153.271,-183.842,-406.513,-188.028,-462.973,-218.479,0,-253.236,-256.877,-381.669,-163.184,-416.425,-228.391,-435.72 dDocent_Contig_403 39 . A C 142.747 . AB=0.15625;ABP=68.6973;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=163;DPB=163;DPRA=1.29293;EPP=24.725;EPPR=335.246;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=389;QR=6018;RO=153;RPL=0;RPP=24.725;RPPR=335.246;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=153;SRP=335.246;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:50:50,0:50:1965:0:0:0,-15.0515,-177.059 0/0:49:49,0:49:1947:0:0:0,-14.7505,-175.439 0/1:64:54,10:54:2106:10:389:-16.0986,0,-170.453 dDocent_Contig_404 1 . N G 76.8682 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 dDocent_Contig_405 51 . G T 1751.39 . AB=0.0571429;ABP=62.6327;AC=0;AF=0;AN=6;AO=2;CIGAR=11M1X2M;DP=88;DPB=92.2143;DPRA=0;EPP=7.35324;EPPR=37.7539;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=28;QR=616;RO=16;RPL=0;RPP=7.35324;RPPR=37.7539;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:35:5,2,25,2:5:192:2,25,2:49,936,28:-75.259,-72.9677,-88.1305,0,-12.0493,-8.3121,-74.8613,-86.8289,-13.9616,-90.023 0|0:15:3,2,9,0:3:117:2,9,0:77,335,0:-26.4986,-21.0781,-30.0969,0,-3.29721,-6.90672,-27.4017,-30.6989,-9.61599,-37.0218 0|0:38:8,0,27,0:8:307:0,27,0:0,993,0:-78.9043,-81.3125,-106.519,0,-25.3261,-17.1983,-81.3125,-106.519,-25.3261,-106.519 dDocent_Contig_406 98 . N G 12067.7 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=422;CIGAR=1X;DP=428;DPB=428;DPRA=0;EPP=919.372;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=59.7796;MQMR=0;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.99763;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=13402;QR=0;RO=0;RPL=422;RPP=919.372;RPPR=0;RPR=0;RUN=1;SAF=422;SAP=919.372;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:168:0,165:0:0:165:5203:-468.154,-49.67,0 1/1:103:0,102:0:0:102:3191:-287.189,-30.7051,0 1/1:157:0,155:0:0:155:5008:-450.823,-46.6597,0 dDocent_Contig_411 98 . N G 800.711 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=27;CIGAR=1X;DP=27;DPB=27;DPRA=0;EPP=61.6401;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=874;QR=0;RO=0;RPL=27;RPP=61.6401;RPPR=0;RPR=0;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:13:0,13:0:0:13:428:-38.838,-3.91339,0 1/1:8:0,8:0:0:8:274:-24.994,-2.40824,0 1/1:6:0,6:0:0:6:172:-15.762,-1.80618,0 dDocent_Contig_413 128 . T C 131.19 . AB=0.352941;ABP=6.20364;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=59;DPB=59;DPRA=0.809524;EPP=3.0103;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=219;QR=1784;RO=53;RPL=0;RPP=16.0391;RPPR=118.098;RPR=6;RUN=1;SAF=3;SAP=3.0103;SAR=3;SRF=0;SRP=118.098;SRR=53;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:661:0:0:0,-6.0206,-59.8003 0/1:17:11,6:11:372:6:219:-14.9429,0,-28.6889 0/0:22:22,0:22:751:0:0:0,-6.62266,-67.9075 dDocent_Contig_414 14 . T A 1189.79 . AB=0.525641;ABP=3.45573;AC=3;AF=0.5;AN=6;AO=41;CIGAR=1M1D1X3M;DP=78;DPB=70;DPRA=0;EPP=92.0407;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1618;QR=1169;RO=30;RPL=0;RPP=92.0407;RPPR=68.1545;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:25:9,3,13:9:353:3,13:113,514:-39.6035,-33.0567,-61.1835,0,-19.7871,-25.1294 0|1:22:7,0,15:7:272:0,15:0,595:-47.267,-49.3743,-71.7233,0,-22.7399,-18.2244 0|1:31:14,4,13:14:544:4,13:157,509:-37.6318,-28.9338,-72.4307,0,-31.7864,-40.7861 dDocent_Contig_415 24 . G A 45.4693 . AB=0.1875;ABP=16.582;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=73;DPB=73;DPRA=0.561404;EPP=9.52472;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=2740;RO=70;RPL=0;RPP=9.52472;RPPR=155.013;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1180:0:0:0,-9.33193,-106.472 0/0:26:26,0:26:1044:0:0:0,-7.82678,-94.2493 0/1:16:13,3:13:516:3:120:-6.37083,0,-41.9685 dDocent_Contig_418 71 . A C 3316.83 . AB=0.77381;ABP=57.7107;AC=4;AF=0.666667;AN=6;AO=105;CIGAR=1X;DP=126;DPB=126;DPRA=0;EPP=231.015;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4081;QR=810;RO=21;RPL=105;RPP=231.015;RPPR=48.6112;RPR=0;RUN=1;SAF=105;SAP=231.015;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:11,23:11:421:23:914:-72.3299,0,-27.9996 0/1:50:8,42:8:309:42:1633:-132.163,0,-13.1157 1/1:42:2,40:2:80:40:1534:-130.713,-5.05147,0 dDocent_Contig_419 83 . T C 36.3826 . AB=0.148148;ABP=32.0437;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=79;DPB=79;DPRA=1.03846;EPP=11.6962;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=147;QR=2752;RO=75;RPL=4;RPP=11.6962;RPPR=165.871;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:548:0:0:0,-4.51545,-49.6577 0/0:37:37,0:37:1357:0:0:0,-11.1381,-122.429 0/1:27:23,4:23:847:4:147:-5.46207,0,-68.4267 dDocent_Contig_420 29 . G A 1348.74 . AB=0.383459;ABP=18.7004;AC=3;AF=0.5;AN=6;AO=51;CIGAR=1X;DP=133;DPB=133;DPRA=0;EPP=113.755;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1994;QR=3187;RO=82;RPL=0;RPP=113.755;RPPR=181.071;RPR=51;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:40,11:40:1536:11:437:-24.3338,0,-123.143 0/1:40:27,13:27:1068:13:493:-32.6574,0,-84.3649 0/1:42:15,27:15:583:27:1064:-83.4062,0,-40.1596 dDocent_Contig_421 9 . T A 450.167 . AB=0.36;ABP=11.5225;AC=1;AF=0.166667;AN=6;AO=18;CIGAR=1X;DP=128;DPB=128;DPRA=1.28205;EPP=42.0968;EPPR=241.872;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=684;QR=4103;RO=110;RPL=0;RPP=42.0968;RPPR=241.872;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=110;SRP=241.872;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:32,0:32:1207:0:0:0,-9.63296,-108.929 0/0:46:46,0:46:1707:0:0:0,-13.8474,-153.891 0/1:50:32,18:32:1189:18:684:-46.8406,0,-92.251 dDocent_Contig_423 168 . T C 1063.82 . AB=0.428571;ABP=7.35324;AC=3;AF=0.5;AN=6;AO=42;CIGAR=1X;DP=98;DPB=98;DPRA=0;EPP=94.2121;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=59.9286;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1560;QR=2111;RO=56;RPL=42;RPP=94.2121;RPPR=124.613;RPR=0;RUN=1;SAF=0;SAP=94.2121;SAR=42;SRF=0;SRP=124.613;SRR=56;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:23,22:23:872:22:792:-58.0381,0,-65.2422 0/1:22:9,13:9:341:13:495:-38.2623,0,-24.4153 0/1:31:24,7:24:898:7:273:-15.6047,0,-71.7754 dDocent_Contig_424 58 . T C 302.819 . AB=0.219178;ABP=53.0137;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=73;DPB=73;DPRA=0;EPP=37.7539;EPPR=124.613;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.8125;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=630;QR=2118;RO=56;RPL=16;RPP=37.7539;RPPR=124.613;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:12,3:12:452:3:116:-5.95823,0,-36.1749 0/1:32:27,5:27:1026:5:201:-8.83814,0,-83.0095 0/1:25:17,8:17:640:8:313:-21.0084,0,-50.4039 dDocent_Contig_425 50 . T A 3275.42 . AB=0.502222;ABP=3.01995;AC=3;AF=0.5;AN=6;AO=113;CIGAR=1X;DP=225;DPB=225;DPRA=0;EPP=231.322;EPPR=244.044;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.99115;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4443;QR=3642;RO=111;RPL=1;RPP=239.778;RPPR=244.044;RPR=112;RUN=1;SAF=112;SAP=239.778;SAR=1;SRF=0;SRP=244.044;SRR=111;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:93:46,47:46:1508:47:1830:-136.92,0,-108.01 0/1:56:27,28:27:872:28:1071:-80.0102,0,-62.1131 0/1:76:38,38:38:1262:38:1542:-116.134,0,-90.9971 dDocent_Contig_429 11 . A T 97.4499 . AB=0.111111;ABP=26.6552;AC=2;AF=0.333334;AN=6;AO=2;CIGAR=1X2M;DP=89;DPB=89;DPRA=0.75;EPP=7.35324;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=74;QR=3148;RO=80;RPL=0;RPP=7.35324;RPPR=176.728;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:24:24,0,0:24:928:0,0:0,0:0,-7.22472,-83.8318,-7.22472,-83.8318,-83.8318 0|1:18:16,0,2:16:636:0,2:0,74:-1.60723,-6.42371,-58.8117,0,-52.7608,-52.1587 0|1:47:40,7,0:40:1584:7,0:281,0:-11.5139,0,-128.657,-23.5551,-130.764,-153.919 dDocent_Contig_430 32 . G A 216.249 . AB=0.114679;ABP=284.146;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=218;DPB=218;DPRA=0;EPP=57.2971;EPPR=422.104;GTI=0;LEN=1;MEANALT=1;MQM=59.36;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.96;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1005;QR=7647;RO=193;RPL=0;RPP=57.2971;RPPR=422.104;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=193;SRP=422.104;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:57,12:57:2272:12:477:-22.3542,0,-183.881 0/1:35:32,3:32:1275:3:120:-0.65126,0,-104.482 0/1:114:104,10:104:4100:10:408:-2.76317,0,-334.658 dDocent_Contig_431 205 . C T 149.424 . AB=0.225;ABP=29.2851;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=105;DPB=105;DPRA=1.23077;EPP=22.5536;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=313;QR=3417;RO=96;RPL=9;RPP=22.5536;RPPR=211.472;RPR=0;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=211.472;SRR=96;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:31,9:31:1094:9:313:-16.4653,0,-86.7247 0/0:20:20,0:20:690:0:0:0,-6.0206,-62.415 0/0:45:45,0:45:1633:0:0:0,-13.5463,-147.251 dDocent_Contig_432 9 . T A 83.0856 . AB=0.114286;ABP=183.925;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=199;DPB=199;DPRA=0;EPP=42.0968;EPPR=378.867;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.977901;PAO=0;PQA=0;PQR=0;PRO=0;QA=668;QR=6729;RO=181;RPL=0;RPP=42.0968;RPPR=396.047;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=179;SRP=378.867;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:59:57,2:57:2156:2:76:0,-10.5461,-187.056 0/1:99:89,10:89:3278:10:379:-4.65978,0,-265.395 0/1:41:35,6:35:1295:6:213:-7.17134,0,-104.49 dDocent_Contig_433 7 . T C 1917.65 . AB=0.132075;ABP=252.279;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X1M;DP=212;DPB=212;DPRA=0;EPP=63.8115;EPPR=226.672;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1037;QR=3903;RO=103;RPL=0;RPP=63.8115;RPPR=226.672;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:54:31,21,2:31:1190:21,2:774,72:-53.968,0,-91.3832,-57.4266,-91.8322,-154.516 0|1:55:26,22,7:26:968:22,7:838,259:-60.9191,0,-72.6131,-47.5613,-58.0491,-124.683 0|1:103:46,31,19:46:1745:31,19:1174,706:-82.4012,0,-133.759,-38.477,-85.3196,-175.845 dDocent_Contig_434 123 . C T 517.477 . AB=0.18;ABP=180.897;AC=3;AF=0.5;AN=6;AO=36;CIGAR=1X;DP=200;DPB=200;DPRA=0;EPP=81.1833;EPPR=359.132;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1294;QR=5690;RO=164;RPL=0;RPP=81.1833;RPPR=359.132;RPR=36;RUN=1;SAF=0;SAP=81.1833;SAR=36;SRF=0;SRP=359.132;SRR=164;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:51,14:51:1742:14:497:-25.4976,0,-137.49 0/1:55:48,7:48:1692:7:251:-6.38062,0,-136.007 0/1:80:65,15:65:2256:15:546:-25.3924,0,-179.218 dDocent_Contig_435 91 . G A 2089.8 . AB=0.833333;ABP=66.7068;AC=4;AF=0.666667;AN=6;AO=81;CIGAR=1X;DP=92;DPB=92;DPRA=0;EPP=178.9;EPPR=26.8965;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2572;QR=370;RO=11;RPL=81;RPP=178.9;RPPR=26.8965;RPR=0;RUN=1;SAF=81;SAP=178.9;SAR=0;SRF=11;SRP=26.8965;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:5,26:5:173:26:853:-67.7449,0,-6.57823 1/1:26:0,26:0:0:26:805:-72.741,-7.82678,0 0/1:35:6,29:6:197:29:914:-72.0174,0,-7.51729 dDocent_Contig_436 9 . C T 21917.3 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=679;CIGAR=1X;DP=700;DPB=700;DPRA=0;EPP=1477.44;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.9794;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.951399;PAIREDR=0.75;PAO=0;PQA=0;PQR=0;PRO=0;QA=25108;QR=748;RO=20;RPL=0;RPP=1477.44;RPPR=46.4397;RPR=679;RUN=1;SAF=679;SAP=1477.44;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:268:7,261:7:250:261:9636:-844.118,-57.8371,0 1/1:361:13,347:13:498:347:12814:-1107.71,-63.3328,0 1/1:71:0,71:0:0:71:2658:-239.423,-21.3731,0 dDocent_Contig_437 40 . G A 44.5413 . AB=0.1875;ABP=16.582;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=44;DPB=44;DPRA=1.14286;EPP=9.52472;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=1623;RO=41;RPL=0;RPP=9.52472;RPPR=92.0407;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:436:0:0:0,-3.31133,-39.5935 0/1:16:13,3:13:515:3:119:-6.27802,0,-41.879 0/0:17:17,0:17:672:0:0:0,-5.11751,-60.8097 dDocent_Contig_438 13 . G A 1782.05 . AB=0.508197;ABP=3.0815;AC=3;AF=0.5;AN=6;AO=62;CIGAR=1X;DP=122;DPB=122;DPRA=0;EPP=137.642;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2439;QR=2300;RO=60;RPL=0;RPP=137.642;RPPR=133.299;RPR=62;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:22,15:22:841:15:586:-41.9379,0,-64.8552 0/1:48:24,24:24:897:24:957:-71.9833,0,-66.5697 0/1:37:14,23:14:562:23:896:-69.8063,0,-39.7836 dDocent_Contig_439 33 . C G 245.122 . AB=0.268293;ABP=22.1298;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=41;DPB=41;DPRA=0;EPP=26.8965;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=441;QR=1215;RO=30;RPL=0;RPP=26.8965;RPPR=68.1545;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:9,2:9:366:2:81:-4.3744,0,-29.9938 0/1:18:10,8:10:404:8:319:-23.6557,0,-31.3021 0/1:12:11,1:11:445:1:41:-0.482207,0,-36.7931 dDocent_Contig_440 145 . T G 121.961 . AB=0.12766;ABP=116.204;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=269;DPB=269;DPRA=1.07429;EPP=29.068;EPPR=561.079;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=463;QR=9877;RO=257;RPL=0;RPP=29.068;RPPR=561.079;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=561.079;SRR=257;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:94:82,12:82:3196:12:463:-13.7189,0,-259.439 0/0:74:74,0:74:2711:0:0:0,-22.2762,-244.143 0/0:101:101,0:101:3970:0:0:0,-30.404,-357.313 dDocent_Contig_441 62 . A G 850.864 . AB=0.378947;ABP=15.102;AC=3;AF=0.5;AN=6;AO=36;CIGAR=1X;DP=95;DPB=95;DPRA=0;EPP=81.1833;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1313;QR=2199;RO=59;RPL=36;RPP=81.1833;RPPR=131.127;RPR=0;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:21,3:21:783:3:107:-2.75579,0,-63.5667 0/1:33:16,17:16:613:17:658:-49.6232,0,-45.5749 0/1:38:22,16:22:803:16:548:-38.2056,0,-61.1457 dDocent_Contig_442 90 . G T 63.6109 . AB=0.115385;ABP=36.4176;AC=0;AF=0;AN=6;AO=3;CIGAR=2X2M3X1M2X1M1X2M1X;DP=85;DPB=139.467;DPRA=0;EPP=9.52472;EPPR=148.499;GTI=0;LEN=1;MEANALT=4;MQM=27;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0.656716;PAO=8;PQA=243;PQR=2006;PRO=60.3333;QA=117;QR=2619;RO=67;RPL=3;RPP=9.52472;RPPR=148.499;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=148.499;SRR=67;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:22:19,0,2,0,0:19:739:0,2,0,0:0,81,0,0:-0.96719,-6.68676,-67.4393,0,-60.758,-60.1559,-6.68676,-67.4393,-60.758,-67.4393,-6.68676,-67.4393,-60.758,-67.4393,-67.4393 0|0:26:17,3,1,1,4:17:658:3,1,1,4:117,40,41,161:-8.15845,-6.96887,-60.1269,-9.97943,-57.7342,-63.7419,-9.89016,-57.645,-60.6578,-63.6527,0,-47.7575,-50.77,-50.6808,-52.8619 0|0:37:31,0,0,3,3:31:1222:0,0,3,3:0,0,119,123:-0.825835,-10.1578,-110.715,-10.1578,-110.715,-110.715,-0.357668,-100.918,-100.918,-100.015,0,-100.561,-100.561,-90.764,-99.6581 dDocent_Contig_443 9 . T C 2274.63 . AB=0.13885;ABP=810.765;AC=0;AF=0;AN=6;AO=99;CIGAR=2X;DP=713;DPB=713;DPRA=0;EPP=217.986;EPPR=1001.89;GTI=0;LEN=1;MEANALT=4;MQM=59.5455;MQMR=51.837;NS=3;NUMALT=3;ODDS=1.11022e-16;PAIRED=1;PAIREDR=0.991304;PAO=0;PQA=0;PQR=0;PRO=0;QA=3774;QR=17308;RO=460;RPL=0;RPP=217.986;RPPR=1001.89;RPR=99;RUN=1;SAF=99;SAP=217.986;SAR=0;SRF=460;SRP=1001.89;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:175:130,9,22,14:130:4855:9,22,14:339,831,504:-28.4862,-39.8379,-420.626,0,-355.726,-376.883,-30.281,-385.984,-346.155,-409.549 0|0:199:128,33,34,2:128:4816:33,34,2:1244,1305,72:-67.9596,-4.59981,-367.867,0,-271.311,-362.969,-101.157,-372.465,-367.868,-473.755 0|0:339:202,57,63,14:202:7637:57,63,14:2191,2419,504:-136.54,-17.6011,-589.956,0,-409.766,-570.548,-160,-569.763,-552.161,-745.292 dDocent_Contig_444 125 . N G 67.4314 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=7I10X;DP=2;DPB=3.4;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=71;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:71:-6.74206,-0.60206,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_446 19 . C T 3339.49 . AB=0.70297;ABP=39.1513;AC=4;AF=0.666667;AN=6;AO=107;CIGAR=1X;DP=140;DPB=140;DPRA=0;EPP=235.358;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4201;QR=1325;RO=33;RPL=0;RPP=235.358;RPPR=74.6689;RPR=107;RUN=1;SAF=107;SAP=235.358;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:8,43:8:326:43:1684:-136.442,0,-14.3573 1/1:39:3,36:3:118:36:1396:-114.904,-0.737663,0 0/1:50:22,28:22:881:28:1121:-86.1254,0,-64.5479 dDocent_Contig_447 36 . C A 1269.07 . AB=0.311377;ABP=54.6185;AC=3;AF=0.5;AN=6;AO=52;CIGAR=1X;DP=167;DPB=167;DPRA=0;EPP=115.927;EPPR=252.73;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2019;QR=4553;RO=115;RPL=0;RPP=115.927;RPPR=252.73;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=115;SRP=252.73;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:41,9:41:1619:9:364:-18.0729,0,-130.895 0/1:65:42,23:42:1656:23:890:-60.8426,0,-129.709 0/1:52:32,20:32:1278:20:765:-53.5144,0,-99.6372 dDocent_Contig_450 28 . T C 91.1157 . AB=0.266667;ABP=10.1038;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=60;DPB=60;DPRA=0.666667;EPP=11.6962;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=2248;RO=56;RPL=0;RPP=11.6962;RPPR=124.613;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:11,4:11:436:4:164:-10.6344,0,-35.0778 0/0:21:21,0:21:840:0:0:0,-6.32163,-75.9162 0/0:24:24,0:24:972:0:0:0,-7.22472,-87.7784 dDocent_Contig_451 9 . T A 290.398 . AB=0.351351;ABP=10.1116;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X2M2I2M;DP=61;DPB=66.6;DPRA=0.770833;EPP=31.2394;EPPR=105.07;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=476;QR=1785;RO=47;RPL=0;RPP=31.2394;RPPR=105.07;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:24:24,0:24:931:0:0:0,-7.22472,-84.1021 0|1:18:16,2:16:592:2:73:-1.51276,0,-48.1943 0|1:19:7,11:7:262:11:403:-30.819,0,-18.1387 dDocent_Contig_452 26 . A C 28107.3 . AB=0.0472637;ABP=718.71;AC=0;AF=0;AN=6;AO=49;CIGAR=3X;DP=1112;DPB=1112;DPRA=0;EPP=109.412;EPPR=176.728;GTI=0;LEN=1;MEANALT=7.66667;MQM=18;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.675;PAO=0;PQA=0;PQR=0;PRO=0;QA=1834;QR=3153;RO=80;RPL=49;RPP=109.412;RPPR=176.728;RPR=0;RUN=1;SAF=0;SAP=109.412;SAR=49;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:402:33,19,305,26:33:1289:19,305,26:728,12018,1000:-978.786,-963.746,-1063.99,0,-81.0407,-14.1717,-906.632,-987.621,-23.8834,-1004.77 0|0:348:24,29,259,15:24:942:29,259,15:1068,10174,600:-830.048,-799.324,-868.066,-0.467589,-40.0664,0,-787.848,-827.372,-28.5265,-860.806 0|0:362:23,1,306,19:23:922:1,306,19:38,12083,737:-1003.42,-1009.03,-1084.69,-16.1429,-90.8038,0,-949.806,-1024.45,-31.5781,-1020.05 dDocent_Contig_453 8 . G T 4935.03 . AB=0.0453202;ABP=1825.61;AC=0;AF=0;AN=6;AO=46;CIGAR=2M1X4M;DP=1015;DPB=999;DPRA=0;EPP=102.898;EPPR=1147.38;GTI=0;LEN=1;MEANALT=18;MQM=60;MQMR=59.8918;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.952562;PAO=0;PQA=0;PQR=0;PRO=0;QA=1747;QR=20267;RO=527;RPL=0;RPP=102.898;RPPR=1147.38;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=527;SRP=1147.38;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:293:150,4,54,13:150:5766:4,54,13:143,2111,477:-126.231,-159.726,-631.802,0,-461.623,-457.027,-132.4,-594.019,-434.296,-601.765 0|0:237:117,15,43,13:117:4485:15,43,13:535,1667,499:-101.713,-93.3264,-456.139,0,-323.724,-354.389,-95.9725,-419.694,-326.372,-459.389 0|0:485:260,9,109,20:260:10016:9,109,20:331,4328,771:-271.082,-322.287,-1142.01,0,-795.37,-789.621,-286.037,-1081.4,-759.121,-1102.45 dDocent_Contig_454 32 . T A 98.2569 . AB=0;ABP=0;AC=0;AF=0;AN=6;AO=2;CIGAR=3M1X5M;DP=122;DPB=125.111;DPRA=0.64;EPP=7.35324;EPPR=248.387;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=4332;RO=113;RPL=0;RPP=7.35324;RPPR=248.387;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=113;SRP=248.387;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:40:33,7,0:33:1275:7,0:256,0:-11.3486,0,-102.998,-21.2825,-105.105,-126.018 0|0:32:30,0,2:30:1153:0,2:0,78:0,-9.0309,-103.678,-2.22966,-97.2664,-96.6643 0|0:50:50,0,0:50:1904:0,0:0,0:0,-15.0515,-171.598,-15.0515,-171.598,-171.598 dDocent_Contig_455 58 . T C 92.5584 . AB=0.166667;ABP=43.5445;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=132;DPB=132;DPRA=1.5625;EPP=20.3821;EPPR=270.101;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=298;QR=4847;RO=123;RPL=8;RPP=20.3821;RPPR=270.101;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:58:57,1:57:2237:1:39:0,-13.5632,-197.62 0/1:42:34,7:34:1346:7:259:-11.0797,0,-108.84 0/0:32:32,0:32:1264:0:0:0,-9.63296,-114.024 dDocent_Contig_456 9 . A G 1480.5 . AB=0.199446;ABP=286.258;AC=3;AF=0.5;AN=6;AO=72;CIGAR=1X3M;DP=361;DPB=361;DPRA=0;EPP=159.356;EPPR=487.249;GTI=0;LEN=1;MEANALT=3.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2695;QR=8600;RO=223;RPL=0;RPP=159.356;RPPR=487.249;RPR=72;RUN=1;SAF=72;SAP=159.356;SAR=0;SRF=223;SRP=487.249;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:108:67,18,2,20:67:2561:18,2,20:671,76,760:-42.1678,-7.4049,-212.121,-56.1032,-211.307,-265.634,0,-155.212,-203.908,-204.12 0|1:82:48,5,8,20:48:1845:5,8,20:189,293,751:-47.0725,-46.0286,-195.991,-37.5782,-173.551,-186.635,0,-135.977,-127.526,-145.449 0|1:171:108,26,5,32:108:4194:26,5,32:974,187,1184:-64.3326,-17.0703,-353.866,-81.5312,-346.381,-424.646,0,-264.851,-329.308,-334.987 dDocent_Contig_457 80 . G A 1536.49 . AB=0.578431;ABP=8.46027;AC=3;AF=0.5;AN=6;AO=59;CIGAR=1X;DP=102;DPB=102;DPRA=0;EPP=131.127;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2099;QR=1481;RO=43;RPL=59;RPP=131.127;RPPR=96.3836;RPR=0;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:14,28:14:482:28:998:-77.481,0,-31.0587 0/1:26:12,14:12:401:14:501:-37.5978,0,-28.5827 0/1:34:17,17:17:598:17:600:-44.0932,0,-43.9128 dDocent_Contig_458 99 . N T 109.158 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=22.5536;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=55.5556;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=110;QR=0;RO=0;RPL=9;RPP=22.5536;RPPR=0;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:16:-1.59998,-0.30103,0 1/1:5:0,5:0:0:5:46:-4.2313,-1.50515,0 1/1:3:0,3:0:0:3:48:-4.47898,-0.90309,0 dDocent_Contig_459 50 . C T 301.219 . AB=0.152672;ABP=140.277;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=1X;DP=175;DPB=175;DPRA=1.48864;EPP=46.4397;EPPR=339.589;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.993548;PAO=0;PQA=0;PQR=0;PRO=0;QA=804;QR=6199;RO=155;RPL=20;RPP=46.4397;RPPR=339.589;RPR=0;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=155;SRP=339.589;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:44:44,0:44:1742:0:0:0,-13.2453,-157 0/1:64:56,8:56:2252:8:325:-10.3535,0,-183.582 0/1:67:55,12:55:2205:12:479:-23.2912,0,-178.446 dDocent_Contig_460 159 . C G 525.088 . AB=0.653846;ABP=8.35546;AC=1;AF=0.166667;AN=6;AO=17;CIGAR=1X;DP=71;DPB=71;DPRA=1.15556;EPP=39.9253;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=687;QR=2151;RO=54;RPL=17;RPP=39.9253;RPPR=120.27;RPR=0;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=120.27;SRR=54;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1072:0:0:0,-8.12781,-96.7701 0/0:18:18,0:18:716:0:0:0,-5.41854,-64.7649 0/1:26:9,17:9:363:17:687:-54.3327,0,-25.2073 dDocent_Contig_462 59 . C T 2393.1 . AB=0.621951;ABP=13.6028;AC=4;AF=0.666667;AN=6;AO=80;CIGAR=1X;DP=111;DPB=111;DPRA=0;EPP=176.728;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.9875;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2962;QR=1166;RO=31;RPL=80;RPP=176.728;RPPR=70.3259;RPR=0;RUN=1;SAF=80;SAP=176.728;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:16,28:16:601:28:1031:-79.8525,0,-41.1807 0/1:38:15,23:15:565:23:878:-67.8983,0,-39.7497 1/1:29:0,29:0:0:29:1053:-95.0818,-8.72987,0 dDocent_Contig_463 8 . T G 4690.39 . AB=0.783333;ABP=86.6844;AC=4;AF=0.666667;AN=6;AO=154;CIGAR=1X;DP=184;DPB=184;DPRA=0;EPP=337.417;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5800;QR=1140;RO=30;RPL=0;RPP=337.417;RPPR=68.1545;RPR=154;RUN=1;SAF=154;SAP=337.417;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:64:4,60:4:152:60:2261:-189.663,-5.21672,0 0/1:51:14,37:14:541:37:1363:-107.601,0,-33.6832 0/1:69:12,57:12:447:57:2176:-175.297,0,-19.8039 dDocent_Contig_464 70 . G A 252.075 . AB=0.264151;ABP=28.6173;AC=1;AF=0.166667;AN=6;AO=20;CIGAR=1X;DP=144;DPB=144;DPRA=0;EPP=46.4397;EPPR=272.273;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.991935;PAO=0;PQA=0;PQR=0;PRO=0;QA=682;QR=4236;RO=124;RPL=20;RPP=46.4397;RPPR=272.273;RPR=0;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=124;SRP=272.273;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:59:56,3:56:1889:3:105:0,-7.96461,-160.495 0/1:53:39,14:39:1347:14:474:-27.0301,0,-105.576 0/0:32:29,3:29:1000:3:103:0,-0.0229925,-80.7016 dDocent_Contig_465 81 . G A 651.201 . AB=0.409091;ABP=7.74806;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1X;DP=66;DPB=66;DPRA=0;EPP=61.6401;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=994;QR=1474;RO=39;RPL=27;RPP=61.6401;RPPR=87.6977;RPR=0;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:15,14:15:566:14:508:-37.3251,0,-42.5489 0/1:24:17,7:17:652:7:266:-17.0758,0,-51.7906 0/1:13:7,6:7:256:6:220:-16.2421,0,-19.4794 dDocent_Contig_466 108 . A G 60.7604 . AB=0.192308;ABP=24.391;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=141;DPB=141;DPRA=0.452174;EPP=13.8677;EPPR=298.331;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.963235;PAO=0;PQA=0;PQR=0;PRO=0;QA=171;QR=4612;RO=136;RPL=0;RPP=13.8677;RPPR=298.331;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=298.331;SRR=136;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:74:74,0:74:2497:0:0:0,-22.2762,-224.988 0/1:26:21,5:21:718:5:171:-7.89995,0,-57.1125 0/0:41:41,0:41:1397:0:0:0,-12.3422,-126.025 dDocent_Contig_467 9 . G T 167.109 . AB=0.266667;ABP=17.1973;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=63;DPB=63;DPRA=1.81818;EPP=20.3821;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=299;QR=2022;RO=54;RPL=0;RPP=20.3821;RPPR=120.27;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:22,8:22:821:8:299:-18.2337,0,-65.179 0/0:16:16,0:16:590:0:0:0,-4.81648,-53.4315 0/0:17:16,0:16:611:0:0:0,-4.81648,-55.1259 dDocent_Contig_468 44 . A G 116.942 . AB=0.206897;ABP=24.6501;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=93;DPB=93;DPRA=0.90625;EPP=16.0391;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=3393;RO=86;RPL=0;RPP=16.0391;RPPR=189.757;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:1001:0:0:0,-7.52575,-90.3875 0/0:39:38,0:38:1475:0:0:0,-11.4391,-132.815 0/1:29:23,6:23:917:6:243:-13.5181,0,-74.1057 dDocent_Contig_469 10 . A G 439.659 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=48;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=107.241;EPPR=7.35324;GTI=0;LEN=1;MEANALT=1;MQM=10.5625;MQMR=11.5;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1821;QR=33;RO=2;RPL=0;RPP=107.241;RPPR=7.35324;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=2;SRP=7.35324;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:19:1,18:1:16:18:674:-17.7936,-4.80809,0 1/1:30:1,29:1:17:29:1130:-24.7495,-7.8702,0 1/1:1:0,1:0:0:1:17:-0.928275,-0.30103,0 dDocent_Contig_470 8 . G A 457.985 . AB=0.0793651;ABP=99.8304;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=2M1X11M;DP=99;DPB=97.5714;DPRA=0;EPP=13.8677;EPPR=120.27;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=59.963;NS=3;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=0.962963;PAO=0;PQA=0;PQR=0;PRO=0;QA=194;QR=2035;RO=54;RPL=0;RPP=13.8677;RPPR=120.27;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:35:18,4,0,1,2,9:18:670:4,0,1,2,9:140,0,39,78,320:-18.4793,-12.5067,-66.1564,-23.8979,-67.3606,-78.7492,-20.6892,-64.1537,-75.5424,-75.2414,-17.4802,-60.9468,-72.3356,-69.1287,-71.7335,0,-43.4569,-54.8431,-51.6365,-48.4297,-52.1339 0|0:36:16,0,2,3,0,12:16:608:0,2,3,0,12:0,16,121,0,434:-29.2616,-34.0781,-83.9671,-33.7467,-83.6236,-83.0215,-24.3575,-74.2555,-73.9134,-73.3524,-34.0781,-83.9671,-83.6236,-74.2555,-83.9671,0,-49.934,-49.5997,-40.2197,-49.934,-46.3216 0|1:28:20,0,0,0,3,5:20:757:0,0,0,3,5:0,0,0,116,121:-3.57082,-9.59142,-71.7135,-9.59142,-71.7135,-71.7135,-9.59142,-71.7135,-71.7135,-71.7135,0,-62.181,-62.181,-62.181,-61.2779,-1.39472,-63.4404,-63.4404,-63.4404,-53.9111,-61.9352 dDocent_Contig_471 16 . G A 3068.29 . AB=0.808333;ABP=102.102;AC=3;AF=0.5;AN=6;AO=97;CIGAR=1X;DP=120;DPB=120;DPRA=0;EPP=213.643;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3863;QR=932;RO=23;RPL=0;RPP=213.643;RPPR=52.9542;RPR=97;RUN=1;SAF=97;SAP=213.643;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:9,29:9:366:29:1148:-92.167,0,-21.866 0/1:40:7,33:7:284:33:1304:-105.585,0,-13.8928 0/1:42:7,35:7:282:35:1411:-114.6,0,-13.1097 dDocent_Contig_472 107 . N T 360.96 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=29.068;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=385;QR=0;RO=0;RPL=0;RPP=29.068;RPPR=0;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:7:0,7:0:0:7:224:-20.4748,-2.10721,0 1/1:4:0,4:0:0:4:127:-11.7444,-1.20412,0 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 dDocent_Contig_474 7 . T C 808.613 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=29;CIGAR=1X;DP=29;DPB=29;DPRA=0;EPP=65.983;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=55.8621;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=910;QR=0;RO=0;RPL=0;RPP=65.983;RPPR=0;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:8:0,8:0:0:8:243:-22.1678,-2.40824,0 1/1:12:0,12:0:0:12:368:-33.3872,-3.61236,0 1/1:9:0,9:0:0:9:299:-24.8292,-2.70927,0 dDocent_Contig_475 25 . G C 271.181 . AB=0.173913;ABP=87.981;AC=2;AF=0.333333;AN=6;AO=19;CIGAR=1X;DP=166;DPB=166;DPRA=0;EPP=44.2683;EPPR=320.045;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=760;QR=5823;RO=146;RPL=0;RPP=44.2683;RPPR=320.045;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=146;SRP=320.045;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:48,9:48:1922:9:356:-15.243,0,-156.023 0/0:74:70,3:70:2800:3:120:0,-11.1874,-240.921 0/1:35:28,7:28:1101:7:284:-15.3979,0,-88.8364 dDocent_Contig_476 166 . T C 171.026 . AB=0.25;ABP=20.3821;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=65;DPB=65;DPRA=1.93939;EPP=20.3821;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=310;QR=2234;RO=57;RPL=8;RPP=20.3821;RPPR=126.784;RPR=0;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=126.784;SRR=57;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:24,8:24:949:8:310:-18.6255,0,-76.0781 0/0:12:12,0:12:479:0:0:0,-3.61236,-43.4608 0/0:21:21,0:21:806:0:0:0,-6.32163,-72.842 dDocent_Contig_478 11 . T A 2777.71 . AB=0.0612245;ABP=166.89;AC=0;AF=0;AN=6;AO=6;CIGAR=1M1D1M1X1M;DP=350;DPB=348;DPRA=0.7;EPP=16.0391;EPPR=122.441;GTI=0;LEN=1;MEANALT=8;MQM=13.6667;MQMR=53;NS=3;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=2110;RO=55;RPL=0;RPP=16.0391;RPPR=122.441;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:112:17,0,0,4,10,75:17:645:0,0,4,10,75:0,0,83,139,1497:-89.7879,-94.9054,-144.216,-94.9054,-144.216,-144.216,-89.6029,-138.914,-138.914,-137.71,-87.9374,-137.249,-137.249,-131.948,-134.239,0,-49.3756,-49.3756,-44.0815,-42.4506,-26.7984 0|0:140:12,0,8,5,4,104:12:454:0,8,5,4,104:0,311,120,80,2128:-132.068,-135.681,-165.25,-126.8,-156.37,-153.962,-127.634,-157.204,-148.324,-155.699,-130.761,-160.33,-151.45,-152.284,-159.126,-1.69818,-31.3071,-22.4391,-23.2606,-26.3914,0 0|0:98:26,6,0,7,7,48:26:1011:6,0,7,7,48:82,0,171,63,1030:-59.4379,-63.2241,-138.975,-67.2647,-140.782,-144.82,-55.4337,-128.957,-132.995,-130.888,-65.432,-138.951,-142.988,-131.164,-140.881,0,-73.6,-77.6266,-65.8061,-75.8131,-63.1772 dDocent_Contig_479 21 . A C 120.393 . AB=0.259259;ABP=16.6021;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X1M1X;DP=37;DPB=37;DPRA=1.35;EPP=18.2106;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=39.4286;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.8;PAO=0;PQA=0;PQR=0;PRO=0;QA=277;QR=1187;RO=30;RPL=0;RPP=18.2106;RPPR=68.1545;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:10:10,0:10:393:0:0:0,-3.0103,-35.728 0|1:10:7,3:7:275:3:118:-7.24819,0,-22.1081 0|1:17:13,4:13:519:4:159:-8.31402,0,-41.9388 dDocent_Contig_480 58 . G A 219.382 . AB=0.310345;ABP=12.0706;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=81;DPB=81;DPRA=1.11538;EPP=22.5536;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=357;QR=2758;RO=72;RPL=9;RPP=22.5536;RPPR=159.356;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:994:0:0:0,-7.82678,-89.7614 0/0:26:26,0:26:1001:0:0:0,-7.82678,-90.3956 0/1:29:20,9:20:763:9:357:-23.7621,0,-60.255 dDocent_Contig_481 28 . T A 164.866 . AB=0.318182;ABP=9.32731;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=79;DPB=79;DPRA=0.77193;EPP=18.2106;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=2796;RO=72;RPL=0;RPP=18.2106;RPPR=159.356;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:851:0:0:0,-6.62266,-76.9073 0/0:35:35,0:35:1350:0:0:0,-10.536,-121.763 0/1:22:15,7:15:595:7:273:-18.3105,0,-47.2676 dDocent_Contig_482 9 . G A 969.276 . AB=0.393939;ABP=12.6832;AC=3;AF=0.5;AN=6;AO=39;CIGAR=1X;DP=99;DPB=99;DPRA=0;EPP=87.6977;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1458;QR=2263;RO=60;RPL=0;RPP=87.6977;RPPR=133.299;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:8,16:8:277:16:591:-46.2988,0,-18.0344 0/1:46:28,18:28:1058:18:677:-47.4148,0,-81.6786 0/1:29:24,5:24:928:5:190:-8.73687,0,-75.1067 dDocent_Contig_483 109 . T G 232.953 . AB=0.217391;ABP=50.8771;AC=1;AF=0.166667;AN=6;AO=19;CIGAR=1X;DP=216;DPB=216;DPRA=0.921053;EPP=44.2683;EPPR=430.79;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=614;QR=6572;RO=197;RPL=0;RPP=44.2683;RPPR=430.79;RPR=19;RUN=1;SAF=0;SAP=44.2683;SAR=19;SRF=0;SRP=430.79;SRR=197;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:54,15:54:1817:15:503:-24.8182,0,-143.037 0/0:71:67,4:67:2192:4:111:0,-11.1092,-187.276 0/0:76:76,0:76:2563:0:0:0,-22.8783,-230.926 dDocent_Contig_484 27 . T C 1022.83 . AB=0.368421;ABP=8.7247;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=12M2X6M;DP=88;DPB=86.95;DPRA=0;EPP=33.4109;EPPR=61.6401;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=558;QR=1053;RO=27;RPL=0;RPP=33.4109;RPPR=61.6401;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:38:11,0,3,7,14,3:11:424:0,3,7,14,3:0,109,273,558,118:-42.6456,-45.9569,-80.768,-37.0617,-71.8714,-70.9683,-23.5171,-58.3274,-49.4315,-56.2202,0,-34.8132,-25.9175,-12.3707,-30.5988,-36.2501,-71.061,-62.1647,-48.6204,-25.1054,-70.1579 0|0:28:10,7,0,0,0,10:10:394:7,0,0,0,10:270,0,0,0,366:-26.8875,-7.71327,-38.0402,-29.8978,-40.1475,-62.3229,-29.8978,-40.1475,-62.3229,-62.3229,-29.8978,-40.1475,-62.3229,-62.3229,-62.3229,0,-10.2555,-32.4301,-32.4301,-32.4301,-29.4198 0|0:22:6,4,0,0,0,12:6:235:4,0,0,0,12:160,0,0,0,486:-38.2725,-26.8996,-45.0134,-40.0787,-46.2176,-59.3978,-40.0787,-46.2176,-59.3978,-59.3978,-40.0787,-46.2176,-59.3978,-59.3978,-59.3978,0,-6.13377,-19.3174,-19.3174,-19.3174,-15.7051 dDocent_Contig_485 40 . C G 75.9683 . AB=0.114583;ABP=126.875;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=157;DPB=157;DPRA=0.786885;EPP=26.8965;EPPR=320.045;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=436;QR=5668;RO=146;RPL=0;RPP=26.8965;RPPR=320.045;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=146;SRP=320.045;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:61:61,0:61:2395:0:0:0,-18.3628,-215.71 0/1:41:37,4:37:1436:4:163:-2.7162,0,-117.156 0/1:55:48,7:48:1837:7:273:-8.37654,0,-148.979 dDocent_Contig_486 36 . T C 7121.22 . AB=0.884921;ABP=327.318;AC=3;AF=0.5;AN=6;AO=223;CIGAR=1X;DP=252;DPB=252;DPRA=0;EPP=487.249;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=59.6233;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.986547;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8850;QR=1115;RO=29;RPL=0;RPP=487.249;RPPR=65.983;RPR=223;RUN=1;SAF=223;SAP=487.249;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:141:13,128:13:518:128:5092:-412.387,0,-4.52143 0/1:39:4,35:4:155:35:1374:-112.18,0,-2.5848 0/1:72:12,60:12:442:60:2384:-193.041,0,-18.4298 dDocent_Contig_487 8 . G A 283.862 . AB=0.142857;ABP=111.584;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X1M;DP=98;DPB=98;DPRA=0;EPP=33.4109;EPPR=174.557;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=535;QR=2980;RO=79;RPL=0;RPP=33.4109;RPPR=174.557;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:25:15,0,10:15:561:0,10:0,381:-27.1176,-31.6331,-77.5696,0,-46.3144,-43.3041 0|1:40:34,5,1:34:1284:5,1:187,39:-4.78234,0,-103.723,-11.8078,-102.022,-116.756 0|1:33:30,0,3:30:1135:0,3:0,115:-0.790905,-9.8218,-102.86,0,-93.421,-92.5179 dDocent_Contig_488 8 . G A 2836.3 . AB=0.0588235;ABP=60.4905;AC=0;AF=0;AN=6;AO=2;CIGAR=1X3M1X;DP=136;DPB=136;DPRA=0;EPP=7.35324;EPPR=94.2121;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.928571;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=1580;RO=42;RPL=0;RPP=7.35324;RPPR=94.2121;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:34:8,2,24:8:307:2,24:78,960:-76.6796,-72.6769,-97.2706,0,-18.7818,-17.9701 0|0:54:24,0,29:24:890:0,29:0,1162:-88.6241,-95.8488,-168.656,0,-72.9058,-64.1759 0|0:48:10,0,38:10:383:0,38:0,1534:-123.85,-126.86,-158.286,0,-31.8128,-20.3737 dDocent_Contig_491 15 . G A 363.015 . AB=0.378378;ABP=7.76406;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=55;DPB=55;DPRA=1.02778;EPP=33.4109;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=558;QR=1599;RO=41;RPL=0;RPP=33.4109;RPPR=92.0407;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:9,9:9:351:9:357:-27.0734,0,-26.5305 0/1:19:14,5:14:546:5:201:-12.7509,0,-43.7603 0/0:18:18,0:18:702:0:0:0,-5.41854,-63.5075 dDocent_Contig_492 38 . T C 199.362 . AB=0.212766;ABP=36.6912;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=156;DPB=156;DPRA=0.630435;EPP=29.068;EPPR=315.702;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=477;QR=5593;RO=144;RPL=0;RPP=29.068;RPPR=315.702;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=144;SRP=315.702;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:38,2:38:1471:2:82:0,-4.26152,-124.865 0/1:47:37,10:37:1444:10:395:-21.7601,0,-116.064 0/0:69:69,0:69:2678:0:0:0,-20.7711,-241.149 dDocent_Contig_493 13 . G A 3542.33 . AB=0.314943;ABP=132.405;AC=3;AF=0.5;AN=6;AO=137;CIGAR=1X;DP=435;DPB=435;DPRA=0;EPP=300.502;EPPR=650.109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.97651;PAO=0;PQA=0;PQR=0;PRO=0;QA=5445;QR=11394;RO=298;RPL=0;RPP=300.502;RPPR=650.109;RPR=137;RUN=1;SAF=137;SAP=300.502;SAR=0;SRF=298;SRP=650.109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:186:123,63:123:4715:63:2484:-167.724,0,-368.343 0/1:91:74,17:74:2799:17:689:-34.9454,0,-224.676 0/1:158:101,57:101:3880:57:2272:-157.087,0,-301.687 dDocent_Contig_494 8 . G T 442.135 . AB=0.352941;ABP=12.5903;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=68;DPB=68;DPRA=1.5;EPP=42.0968;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=693;QR=1878;RO=50;RPL=0;RPP=42.0968;RPPR=111.584;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:608:0:0:0,-5.11751,-55.0373 0/1:31:17,14:17:651:14:539:-39.5235,0,-49.5941 0/1:20:16,4:16:619:4:154:-8.21286,0,-50.0295 dDocent_Contig_495 83 . T A 2283.82 . AB=0.700855;ABP=44.0084;AC=3;AF=0.5;AN=6;AO=82;CIGAR=2X;DP=117;DPB=117;DPRA=0;EPP=181.071;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2980;QR=1265;RO=34;RPL=82;RPP=181.071;RPPR=76.8404;RPR=0;RUN=1;SAF=82;SAP=181.071;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:45:12,33:12:433:33:1202:-94.935,0,-25.7626 0|1:35:13,22:13:492:22:791:-60.9675,0,-34.09 0|1:37:9,27:9:340:27:987:-78.0028,0,-19.8116 dDocent_Contig_497 23 . A T 39.2136 . AB=0.157895;ABP=22.325;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=63;DPB=63;DPRA=0.863636;EPP=9.52472;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=2415;RO=60;RPL=0;RPP=9.52472;RPPR=133.299;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:1113:0:0:0,-8.42884,-100.459 0/1:19:16,3:16:650:3:123:-5.74522,0,-53.1137 0/0:16:16,0:16:652:0:0:0,-4.81648,-59.0128 dDocent_Contig_498 8 . G A 717.896 . AB=0.466667;ABP=3.58936;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X;DP=60;DPB=60;DPRA=0;EPP=47.6806;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.857143;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1048;QR=1203;RO=32;RPL=0;RPP=63.8115;RPPR=72.4974;RPR=28;RUN=1;SAF=26;SAP=47.6806;SAR=2;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:15,14:15:571:14:524:-38.769,0,-43.0007 0/1:17:9,8:9:329:8:291:-21.4178,0,-24.8383 0/1:14:8,6:8:303:6:233:-17.1257,0,-23.4145 dDocent_Contig_499 13 . G A 8612.88 . AB=0.236128;ABP=983.97;AC=3;AF=0.5;AN=6;AO=383;CIGAR=3X;DP=1622;DPB=1622;DPRA=0;EPP=834.684;EPPR=2676.09;GTI=0;LEN=1;MEANALT=3;MQM=59.9582;MQMR=60;NS=3;NUMALT=1;ODDS=1.11022e-16;PAIRED=0.898172;PAIREDR=0.999188;PAO=0;PQA=0;PQR=0;PRO=0;QA=15041;QR=46255;RO=1231;RPL=0;RPP=834.684;RPPR=2676.09;RPR=383;RUN=1;SAF=383;SAP=834.684;SAR=0;SRF=1231;SRP=2676.09;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:699:590,106:590:22068:106:4149:-163.813,0,-1775.45 0|1:459:318,138:318:11908:138:5444:-352.284,0,-933.762 0|1:464:323,139:323:12279:139:5448:-350.714,0,-965.136 dDocent_Contig_500 72 . G T 284.242 . AB=0.352941;ABP=9.39698;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=118;DPB=118;DPRA=0.872093;EPP=31.2394;EPPR=231.015;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=483;QR=3907;RO=105;RPL=13;RPP=31.2394;RPPR=231.015;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:43:43,0:43:1605:0:0:0,-12.9443,-144.72 0/0:41:40,1:40:1464:1:37:0,-8.6444,-128.337 0/1:34:22,12:22:838:12:446:-30.2481,0,-65.5066 dDocent_Contig_501 37 . T C 381.213 . AB=0.2;ABP=77.2747;AC=1;AF=0.166667;AN=6;AO=19;CIGAR=1X;DP=137;DPB=137;DPRA=4.52381;EPP=44.2683;EPPR=259.244;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=758;QR=4611;RO=118;RPL=0;RPP=44.2683;RPPR=259.244;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=118;SRP=259.244;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:855:0:0:0,-6.62266,-77.2543 0/1:95:76,19:76:2955:19:758:-39.9452,0,-237.46 0/0:20:20,0:20:801:0:0:0,-6.0206,-72.4045 dDocent_Contig_502 78 . T A 310.511 . AB=0.213333;ABP=56.5443;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=111;DPB=111;DPRA=0;EPP=42.0968;EPPR=204.957;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=709;QR=3699;RO=93;RPL=18;RPP=42.0968;RPPR=204.957;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:36:34,2:34:1343:2:82:0,-3.0574,-113.354 0/1:44:34,10:34:1368:10:388:-22.0212,0,-110.133 0/1:31:25,6:25:988:6:239:-12.5529,0,-79.8878 dDocent_Contig_503 9 . T C 13637.9 . AB=0.75076;ABP=182.701;AC=5;AF=0.833334;AN=6;AO=432;CIGAR=1X3M;DP=560;DPB=560;DPRA=0;EPP=941.086;EPPR=107.241;GTI=0;LEN=1;MEANALT=5;MQM=59.7708;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0.988426;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=16519;QR=1852;RO=48;RPL=0;RPP=941.086;RPPR=107.241;RPR=432;RUN=1;SAF=432;SAP=941.086;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:194:26,3,0,20,144:26:1009:3,0,20,144:117,0,784,5499:-443.34,-441.549,-523.548,-451.166,-524.451,-534.069,-386.691,-459.976,-469.594,-463.573,0,-73.2837,-82.9013,-18.4251,-39.553 1|1:135:7,8,0,13,103:7:275:8,0,13,103:303,0,495,3954:-340.164,-317.432,-337.644,-342.271,-340.052,-364.891,-301.669,-299.45,-324.289,-320.376,-17.9783,-15.7625,-40.6004,0,-9.59426 1|1:231:15,1,15,14,185:15:568:1,15,14,185:40,578,550,7066:-583.813,-585.033,-631.288,-540.871,-584.132,-582.911,-543.09,-586.35,-542.188,-585.431,-9.13829,-52.3952,-8.23375,-10.4493,0 dDocent_Contig_504 37 . T G 369.404 . AB=0.0572917;ABP=329.862;AC=2;AF=0.333333;AN=6;AO=22;CIGAR=1X1M;DP=339;DPB=339;DPRA=0;EPP=50.7827;EPPR=613.194;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=59.7865;NS=3;NUMALT=3;ODDS=2.77556e-17;PAIRED=1;PAIREDR=0.992883;PAO=0;PQA=0;PQR=0;PRO=0;QA=852;QR=10662;RO=281;RPL=0;RPP=50.7827;RPPR=613.194;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=281;SRP=613.194;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:115:90,16,6,3:90:3403:16,6,3:618,231,110:-23.6658,0,-274.112,-31.7913,-259.961,-308.91,-41.7713,-269.939,-301.727,-319.791 0|1:77:58,11,0,8:58:2196:11,0,8:418,0,318:-16.7975,0,-175.211,-34.2572,-178.522,-212.789,-8.06885,-152.338,-186.606,-184.198 0|0:147:133,0,0,11:133:5063:0,0,11:0,0,424:0,-40.037,-455.283,-40.037,-455.283,-455.283,-5.20176,-420.472,-420.472,-417.161 dDocent_Contig_505 1 . N G 70227.3 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=2166;CIGAR=1X;DP=2166;DPB=2166;DPRA=0;EPP=4697.74;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=78054;QR=0;RO=0;RPL=0;RPP=4706.42;RPPR=0;RPR=2166;RUN=1;SAF=1;SAP=4697.74;SAR=2165;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:624:0,624:0:0:624:22296:-2005.92,-187.843,0 1/1:801:0,801:0:0:801:28896:-2599.59,-241.125,0 1/1:741:0,741:0:0:741:26862:-2416.61,-223.063,0 dDocent_Contig_506 41 . A G 939.537 . AB=0.443038;ABP=5.23675;AC=3;AF=0.5;AN=6;AO=35;CIGAR=1X;DP=79;DPB=79;DPRA=0;EPP=79.0118;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1358;QR=1725;RO=44;RPL=0;RPP=79.0118;RPPR=98.5551;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:21,14:21:824:14:531:-37.5874,0,-63.9392 0/1:14:5,9:5:195:9:349:-27.5487,0,-13.7096 0/1:30:18,12:18:706:12:478:-34.3404,0,-54.8308 dDocent_Contig_509 9 . C T 985.819 . AB=0.457831;ABP=4.29225;AC=3;AF=0.5;AN=6;AO=38;CIGAR=1X;DP=83;DPB=83;DPRA=0;EPP=85.5263;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1423;QR=1655;RO=45;RPL=0;RPP=85.5263;RPPR=100.727;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:23,5:23:837:5:177:-7.8466,0,-67.2174 0/1:36:15,21:15:554:21:788:-60.4082,0,-39.3608 0/1:19:7,12:7:264:12:458:-35.85,0,-18.4004 dDocent_Contig_510 85 . C T 1148.86 . AB=0.432624;ABP=8.56989;AC=3;AF=0.5;AN=6;AO=61;CIGAR=1X;DP=141;DPB=141;DPRA=0;EPP=135.47;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1800;QR=2758;RO=80;RPL=61;RPP=135.47;RPPR=176.728;RPR=0;RUN=1;SAF=61;SAP=135.47;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:33,17:33:1137:17:497:-29.9616,0,-87.5861 0/1:44:19,25:19:659:25:715:-51.3787,0,-46.3894 0/1:47:28,19:28:962:19:588:-39.0687,0,-72.7441 dDocent_Contig_512 12 . C T 731.73 . AB=0.177083;ABP=176.909;AC=3;AF=0.5;AN=6;AO=34;CIGAR=1X2M;DP=192;DPB=192;DPRA=0;EPP=76.8404;EPPR=283.13;GTI=0;LEN=1;MEANALT=2.66667;MQM=57.2353;MQMR=59.845;NS=3;NUMALT=3;ODDS=0;PAIRED=0.911765;PAIREDR=0.891473;PAO=0;PQA=0;PQR=0;PRO=0;QA=1289;QR=5156;RO=129;RPL=0;RPP=76.8404;RPPR=283.13;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=129;SRP=283.13;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:68:41,7,14,6:41:1643:7,14,6:277,533,236:-30.8146,-20.3555,-153.622,0,-112.568,-131.151,-23.7439,-136.319,-115.956,-157.31 0|1:56:40,3,12,1:40:1582:3,12,1:122,432,40:-22.8847,-24.854,-153.853,0,-119.803,-126.255,-31.6287,-151.46,-126.572,-161.224 0|1:68:48,12,8,0:48:1931:12,8,0:479,324,0:-24.9966,0,-155.525,-12.7277,-132.421,-169.462,-39.4461,-159.137,-171.87,-198.586 dDocent_Contig_513 21 . A G 6645.3 . 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A C 5890.8 . AB=0.31831;ABP=206.59;AC=3;AF=0.5;AN=6;AO=226;CIGAR=1X3M;DP=710;DPB=710;DPRA=0;EPP=493.763;EPPR=980.173;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.938053;PAIREDR=0.986667;PAO=0;PQA=0;PQR=0;PRO=0;QA=8877;QR=17586;RO=450;RPL=0;RPP=493.763;RPPR=980.173;RPR=226;RUN=1;SAF=226;SAP=493.763;SAR=0;SRF=450;SRP=980.173;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:241:184,5,52:184:7174:5,52:198,2026:-111.104,-150.196,-738.342,0,-573.348,-573.992 0|1:174:102,10,57:102:3969:10,57:398,2225:-152.194,-150.125,-473.291,0,-293.411,-309.025 0|1:295:164,13,117:164:6443:13,117:518,4626:-331.306,-338.017,-864.013,0,-487.253,-494.691 dDocent_Contig_521 8 . G A 59.8354 . AB=0.3;ABP=6.48466;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X2M1X;DP=25;DPB=25;DPRA=1.33333;EPP=9.52472;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=785;RO=21;RPL=0;RPP=9.52472;RPPR=48.6112;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:6:5,0:5:184:0:0:0,-1.50515,-16.5402 0|0:9:9,0:9:331:0:0:0,-2.70927,-30.1401 0|1:10:7,3:7:270:3:116:-7.8074,0,-21.6552 dDocent_Contig_522 175 . T C 181.084 . AB=0.25;ABP=22.5536;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=119;DPB=119;DPRA=1.06579;EPP=24.725;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=378;QR=4284;RO=109;RPL=10;RPP=24.725;RPPR=239.701;RPR=0;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=239.701;SRR=109;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:38,0:38:1476:0:0:0,-11.4391,-133.101 0/1:36:27,9:27:1063:9:338:-19.9323,0,-85.1291 0/0:45:44,1:44:1745:1:40:0,-9.55067,-153.279 dDocent_Contig_523 89 . C G 292.043 . AB=0.246377;ABP=41.5618;AC=1;AF=0.166667;AN=6;AO=17;CIGAR=2X;DP=217;DPB=217;DPRA=0.932432;EPP=39.9253;EPPR=437.305;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=572;QR=6878;RO=200;RPL=17;RPP=39.9253;RPPR=437.305;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=200;SRP=437.305;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:57:57,0:57:1950:0:0:0,-17.1587,-175.781 0|1:69:52,17:52:1798:17:572:-31.0282,0,-141.336 0|0:91:91,0:91:3130:0:0:0,-27.3937,-281.941 dDocent_Contig_524 35 . G T 381.51 . AB=0.288462;ABP=23.2217;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1X;DP=111;DPB=111;DPRA=1.76271;EPP=35.5824;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=611;QR=3808;RO=96;RPL=0;RPP=35.5824;RPPR=211.472;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:37,15:37:1463:15:611:-39.6739,0,-116.267 0/0:28:28,0:28:1100:0:0:0,-8.42884,-99.29 0/0:31:31,0:31:1245:0:0:0,-9.33193,-112.319 dDocent_Contig_525 18 . G A 283.307 . AB=0.272727;ABP=22.751;AC=1;AF=0.166667;AN=6;AO=17;CIGAR=1X;DP=144;DPB=144;DPRA=0;EPP=39.9253;EPPR=213.677;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=679;QR=4955;RO=127;RPL=0;RPP=39.9253;RPPR=278.787;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=119;SRP=213.677;SRR=8;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:32,12:32:1239:12:475:-29.8524,0,-98.5483 0/0:38:35,3:35:1361:3:122:0,-0.066647,-111.387 0/0:62:60,2:60:2355:2:82:0,-10.8842,-204.325 dDocent_Contig_526 139 . A C 834.094 . AB=0.481013;ABP=3.25768;AC=3;AF=0.5;AN=6;AO=38;CIGAR=2X;DP=79;DPB=79;DPRA=0;EPP=85.5263;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1242;QR=1369;RO=41;RPL=0;RPP=85.5263;RPPR=92.0407;RPR=38;RUN=1;SAF=0;SAP=85.5263;SAR=38;SRF=0;SRP=92.0407;SRR=41;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:10,13:10:336:13:424:-31.551,0,-23.6417 0|1:35:15,20:15:503:20:663:-49.4466,0,-35.0545 0|1:21:16,5:16:530:5:155:-7.93466,0,-41.6929 dDocent_Contig_527 98 . N T 128.737 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=134;QR=0;RO=0;RPL=5;RPP=13.8677;RPPR=0;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:41:-3.89396,-0.60206,0 1/1:3:0,3:0:0:3:93:-8.67784,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_528 18 . A G 711.962 . AB=0.0545256;ABP=3164.26;AC=0;AF=0;AN=6;AO=100;CIGAR=1X3M;DP=1834;DPB=1834;DPRA=0;EPP=211.559;EPPR=2778.32;GTI=0;LEN=1;MEANALT=11.6667;MQM=58.87;MQMR=56.3282;NS=3;NUMALT=4;ODDS=0;PAIRED=0.19;PAIREDR=0.853621;PAO=0;PQA=0;PQR=0;PRO=0;QA=3909;QR=50657;RO=1298;RPL=0;RPP=220.158;RPPR=2821.58;RPR=100;RUN=1;SAF=99;SAP=211.559;SAR=1;SRF=1293;SRP=2778.32;SRR=5;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:589:426,20,33,45,37:426:16581:20,33,45,37:781,1299,1691,1462:-9.23018,-86.3318,-1388.69,-58.8146,-1316.05,-1357.25,0,-1257.25,-1229.73,-1294.84,-17.6237,-1274.88,-1247.35,-1188.55,-1314.88 0|0:513:351,26,49,36,29:351:13624:26,49,36,29:1031,1915,1370,1157:-6.41298,-42.1877,-1098.4,-11.515,-1005.64,-1060.78,0,-994.158,-963.463,-1053.21,-16.7756,-1010.93,-980.239,-968.756,-1072.09 0|0:732:521,23,50,67,34:521:20452:23,50,67,34:918,1982,2648,1290:-61.0759,-167.485,-1783.66,-114.819,-1687.47,-1722.85,0,-1572.69,-1520.01,-1602.95,-112.43,-1685.1,-1632.43,-1517.65,-1725.3 dDocent_Contig_529 18 . T C 240.523 . AB=0.218182;ABP=40.9518;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=69;DPB=69;DPRA=1.96429;EPP=29.068;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=482;QR=2256;RO=57;RPL=0;RPP=29.068;RPPR=126.784;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:22,6:22:879:6:242:-13.7285,0,-70.9876 0/0:14:14,0:14:536:0:0:0,-4.21442,-48.5701 0/1:27:21,6:21:841:6:240:-13.8467,0,-67.8769 dDocent_Contig_530 68 . G A 193.466 . AB=0.25;ABP=24.725;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=56;DPB=56;DPRA=0;EPP=26.8965;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=421;QR=1809;RO=45;RPL=11;RPP=26.8965;RPPR=100.727;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:15,1:15:594:1:41:0,-0.721913,-49.7028 0/1:14:11,3:11:446:3:105:-5.57818,0,-36.2812 0/1:26:19,7:19:769:7:275:-17.291,0,-61.7023 dDocent_Contig_532 11 . G A 284.144 . AB=0.132597;ABP=215.227;AC=2;AF=0.333333;AN=6;AO=29;CIGAR=1X;DP=298;DPB=298;DPRA=0;EPP=65.983;EPPR=584.965;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1140;QR=10764;RO=268;RPL=0;RPP=65.983;RPPR=584.965;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=268;SRP=584.965;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:117:112,5:112:4484:5:197:0,-17.1143,-385.384 0/1:72:56,15:56:2230:15:574:-30.23,0,-179.115 0/1:109:100,9:100:4050:9:369:-0.763182,0,-331.649 dDocent_Contig_534 14 . C T 1850.78 . AB=0.527132;ABP=3.83512;AC=3;AF=0.5;AN=6;AO=68;CIGAR=1X;DP=129;DPB=129;DPRA=0;EPP=150.67;EPPR=133.299;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.808824;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2540;QR=2365;RO=60;RPL=0;RPP=150.67;RPPR=133.299;RPR=68;RUN=1;SAF=68;SAP=150.67;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:9,25:9:361:25:926:-73.0024,0,-22.2105 0/1:34:19,15:19:732:15:568:-41.2222,0,-55.9671 0/1:60:32,28:32:1272:28:1046:-76.3761,0,-96.6892 dDocent_Contig_535 70 . C A 1897.4 . AB=0.66;ABP=25.2462;AC=3;AF=0.5;AN=6;AO=66;CIGAR=1X3M2I2M;DP=100;DPB=122;DPRA=0;EPP=146.327;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2491;QR=1243;RO=33;RPL=66;RPP=146.327;RPPR=74.6689;RPR=0;RUN=1;SAF=66;SAP=146.327;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:37:11,26:11:413:26:987:-78.0059,0,-26.3809 0|1:32:10,22:10:372:22:832:-65.5704,0,-24.1907 0|1:31:12,18:12:458:18:672:-51.6865,0,-32.4354 dDocent_Contig_536 29 . T G 1739.37 . AB=0.439716;ABP=7.46105;AC=3;AF=0.5;AN=6;AO=62;CIGAR=1X;DP=141;DPB=141;DPRA=0;EPP=137.642;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2455;QR=3144;RO=79;RPL=0;RPP=137.642;RPPR=174.557;RPR=62;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:22,20:22:880:20:782:-58.0564,0,-66.8675 0/1:56:28,28:28:1110:28:1106:-82.975,0,-83.3315 0/1:43:29,14:29:1154:14:567:-38.4282,0,-91.1961 dDocent_Contig_537 9 . G C 2162.1 . AB=0.637681;ABP=14.3712;AC=4;AF=0.666667;AN=6;AO=72;CIGAR=1X;DP=97;DPB=97;DPRA=0;EPP=159.356;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2662;QR=918;RO=25;RPL=0;RPP=159.356;RPPR=57.2971;RPR=72;RUN=1;SAF=72;SAP=159.356;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:7,27:7:257:27:978:-78.0815,0,-13.2432 0/1:35:18,17:18:661:17:619:-45.4962,0,-49.2814 1/1:28:0,28:0:0:28:1065:-96.1555,-8.42884,0 dDocent_Contig_538 21 . G A 4762.11 . AB=0.615686;ABP=32.653;AC=3;AF=0.5;AN=6;AO=157;CIGAR=1X;DP=255;DPB=255;DPRA=0;EPP=343.931;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6199;QR=3873;RO=98;RPL=0;RPP=343.931;RPPR=215.815;RPR=157;RUN=1;SAF=157;SAP=343.931;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:34,35:34:1357:35:1388:-104.413,0,-101.619 0/1:86:29,57:29:1111:57:2242:-176.076,0,-74.3834 0/1:100:35,65:35:1405:65:2569:-201.245,0,-96.601 dDocent_Contig_539 18 . T C 15019.5 . AB=0.713424;ABP=265.32;AC=3;AF=0.5;AN=6;AO=473;CIGAR=1X;DP=663;DPB=663;DPRA=0;EPP=1030.12;EPPR=415.59;GTI=0;LEN=1;MEANALT=1;MQM=59.9598;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.995772;PAIREDR=0.931579;PAO=0;PQA=0;PQR=0;PRO=0;QA=18979;QR=7608;RO=190;RPL=0;RPP=1030.12;RPPR=415.59;RPR=473;RUN=1;SAF=473;SAP=1030.12;SAR=0;SRF=190;SRP=415.59;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:248:113,135:113:4550:135:5387:-409.783,0,-334.762 0/1:200:39,161:39:1554:161:6465:-521.355,0,-79.8936 0/1:215:38,177:38:1504:177:7127:-576.333,0,-70.8859 dDocent_Contig_540 12 . T G 157.132 . AB=0.181818;ABP=51.3749;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1M1I2M1X1M;DP=101;DPB=103.6;DPRA=0;EPP=26.8965;EPPR=194.1;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=426;QR=3441;RO=88;RPL=0;RPP=26.8965;RPPR=194.1;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:46:45,1,0:45:1763:1,0:39,0:0,-9.95081,-155.012,-13.5463,-155.313,-158.519 0|1:22:18,4,0:18:692:4,0:159,0:-8.06946,0,-55.9885,-13.488,-57.1926,-70.2859 0|1:33:25,6,2:25:986:6,2:228,77:-11.1666,0,-79.3295,-12.3687,-74.8139,-92.9052 dDocent_Contig_542 107 . N C 64.5896 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:68:-6.45788,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_544 1 . N G 110.956 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:119:-11.095,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_545 7 . C T 2406.55 . AB=0.346429;ABP=60.3682;AC=3;AF=0.5;AN=6;AO=97;CIGAR=1X;DP=280;DPB=280;DPRA=0;EPP=213.643;EPPR=400.39;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.994536;PAO=0;PQA=0;PQR=0;PRO=0;QA=3662;QR=6936;RO=183;RPL=0;RPP=213.643;RPPR=400.39;RPR=97;RUN=1;SAF=97;SAP=213.643;SAR=0;SRF=183;SRP=400.39;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:123:84,39:84:3205:39:1485:-96.9009,0,-251.581 0/1:110:84,26:84:3151:26:980:-55.3997,0,-250.645 0/1:47:15,32:15:580:32:1197:-93.8769,0,-38.3945 dDocent_Contig_546 68 . C G 32.3652 . AB=0.14;ABP=59.2949;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=65;DPB=65;DPRA=1.66667;EPP=18.2106;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=1990;RO=58;RPL=7;RPP=18.2106;RPPR=128.956;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:29,4:29:984:4:131:-2.17977,0,-78.9348 0/1:17:14,3:14:484:3:103:-4.49251,0,-38.7722 0/0:15:15,0:15:522:0:0:0,-4.51545,-47.31 dDocent_Contig_548 185 . C T 456.404 . AB=0.447368;ABP=3.9246;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=38;DPB=38;DPRA=0;EPP=39.9253;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=683;QR=848;RO=21;RPL=17;RPP=39.9253;RPPR=48.6112;RPR=0;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:7,11:7:278:11:442:-34.7164,0,-19.9711 0/1:10:7,3:7:284:3:119:-8.08471,0,-22.9237 0/1:10:7,3:7:286:3:122:-8.36219,0,-23.1045 dDocent_Contig_549 79 . C T 57.9603 . AB=0.157895;ABP=41.6397;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=118;DPB=118;DPRA=0.840909;EPP=20.3821;EPPR=241.872;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=277;QR=4049;RO=110;RPL=8;RPP=20.3821;RPPR=241.872;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=110;SRP=241.872;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:44:44,0:44:1614:0:0:0,-13.2453,-145.534 0/0:36:34,2:34:1292:2:69:0,-4.28576,-110.02 0/1:38:32,6:32:1143:6:208:-7.61994,0,-91.7315 dDocent_Contig_551 180 . G C 97.2292 . AB=0.217391;ABP=18.9659;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=65;DPB=65;DPRA=1.09524;EPP=13.8677;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=2379;RO=60;RPL=5;RPP=13.8677;RPPR=133.299;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=133.299;SRR=60;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:667:0:0:0,-5.11751,-60.3588 0/1:23:18,5:18:718:5:201:-11.5468,0,-58.0244 0/0:25:25,0:25:994:0:0:0,-7.52575,-89.7507 dDocent_Contig_552 198 . A G 1529.6 . AB=0.398649;ABP=16.2152;AC=3;AF=0.5;AN=6;AO=59;CIGAR=1X;DP=148;DPB=148;DPRA=0;EPP=131.127;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2245;QR=3383;RO=89;RPL=59;RPP=131.127;RPPR=196.271;RPR=0;RUN=1;SAF=0;SAP=131.127;SAR=59;SRF=0;SRP=196.271;SRR=89;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:29,13:29:1120:13:500:-32.7045,0,-88.4587 0/1:55:37,18:37:1373:18:685:-45.427,0,-107.289 0/1:51:23,28:23:890:28:1060:-80.3519,0,-65.067 dDocent_Contig_553 131 . T A 4202.51 . AB=0.586873;ABP=19.988;AC=3;AF=0.5;AN=6;AO=152;CIGAR=1X;DP=259;DPB=259;DPRA=0;EPP=333.074;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5589;QR=3832;RO=107;RPL=0;RPP=333.074;RPPR=235.358;RPR=152;RUN=1;SAF=0;SAP=333.074;SAR=152;SRF=0;SRP=235.358;SRR=107;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:31,33:31:1115:33:1213:-90.1901,0,-81.3901 0/1:84:20,64:20:682:64:2333:-184.898,0,-36.4068 0/1:111:56,55:56:2035:55:2043:-150.685,0,-150.002 dDocent_Contig_554 20 . G A 151.803 . AB=0.4;ABP=4.31318;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=68;DPB=68;DPRA=0.633333;EPP=18.2106;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=275;QR=2418;RO=61;RPL=0;RPP=18.2106;RPPR=135.47;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:22,1:22:846:1:40:0,-2.92801,-72.4442 0/0:30:30,0:30:1214:0:0:0,-9.0309,-109.531 0/1:15:9,6:9:358:6:235:-17.0042,0,-28.0641 dDocent_Contig_555 8 . G T 260.176 . AB=0.192308;ABP=67.1523;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=114;DPB=114;DPRA=0;EPP=39.9253;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=657;QR=3703;RO=97;RPL=0;RPP=39.9253;RPPR=213.643;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:36:34,2:34:1289:2:76:0,-3.62241,-109.088 0/1:41:31,10:31:1185:10:386:-22.7544,0,-94.6064 0/1:37:32,5:32:1229:5:195:-6.78609,0,-99.7674 dDocent_Contig_556 98 . N C 5750.29 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=214;CIGAR=1X;DP=215;DPB=215;DPRA=0;EPP=467.705;EPPR=0;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=6376;QR=0;RO=0;RPL=214;RPP=467.705;RPPR=0;RPR=0;RUN=1;SAF=214;SAP=467.705;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:81:0,81:0:0:81:2392:-215.535,-24.3834,0 1/1:65:0,65:0:0:65:1909:-172.074,-19.567,0 1/1:69:0,68:0:0:68:2075:-186.943,-20.47,0 dDocent_Contig_557 8 . A G 10206.2 . AB=0.867925;ABP=127.645;AC=5;AF=0.833333;AN=6;AO=318;CIGAR=1X;DP=344;DPB=344;DPRA=0;EPP=693.539;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.965409;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=12181;QR=993;RO=26;RPL=0;RPP=693.539;RPPR=59.4686;RPR=318;RUN=1;SAF=318;SAP=693.539;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:114:8,106:8:308:106:4064:-337.762,-6.23506,0 0/1:106:14,92:14:529:92:3492:-282.504,0,-16.0429 1/1:124:4,120:4:156:120:4625:-401.872,-22.9104,0 dDocent_Contig_558 51 . C A 240.542 . AB=0.344828;ABP=9.07545;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=47;DPB=47;DPRA=0.805556;EPP=24.725;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.972222;PAO=0;PQA=0;PQR=0;PRO=0;QA=389;QR=1418;RO=36;RPL=10;RPP=24.725;RPPR=81.1833;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:9,1:9:367:1:41:-1.08427,0,-30.385 0/0:18:18,0:18:712:0:0:0,-5.41854,-64.4073 0/1:19:9,9:9:339:9:348:-25.8609,0,-25.0407 dDocent_Contig_559 69 . T C 1633.19 . AB=0.05;ABP=108.544;AC=0;AF=0;AN=6;AO=3;CIGAR=1X1M1X;DP=192;DPB=192;DPRA=0;EPP=9.52472;EPPR=272.273;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=4781;RO=124;RPL=3;RPP=9.52472;RPPR=272.273;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=124;SRP=272.273;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:56:41,0,15:41:1532:0,15:0,585:-36.1323,-48.4746,-173.875,0,-125.786,-121.271 0|0:60:34,3,22:34:1332:3,22:120,864:-60.8825,-61.2299,-169.863,0,-99.706,-102.97 0|0:76:49,0,27:49:1917:0,27:0,1049:-71.8272,-86.5777,-244.185,0,-157.997,-149.869 dDocent_Contig_560 35 . C A 84.445 . AB=0.25;ABP=11.6962;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=60;DPB=60;DPRA=0.653846;EPP=13.8677;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=2215;RO=55;RPL=0;RPP=13.8677;RPPR=122.441;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:12,4:12:481:4:160:-9.96732,0,-38.824 0/0:18:17,1:17:692:1:40:0,-1.42286,-58.6127 0/0:26:26,0:26:1042:0:0:0,-7.82678,-94.0735 dDocent_Contig_561 10 . G T 573.558 . AB=0.134615;ABP=183.911;AC=1;AF=0.166667;AN=6;AO=22;CIGAR=1M4I3M4D4M1X3M;DP=235;DPB=235;DPRA=0;EPP=50.7827;EPPR=367.818;GTI=0;LEN=1;MEANALT=4.66667;MQM=59;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.954545;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=822;QR=6517;RO=168;RPL=0;RPP=50.7827;RPPR=367.818;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=168;SRP=367.818;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:77:59,5,8,5:59:2289:5,8,5:185,293,191:-6.18584,-10.0006,-196.577,0,-174.139,-185.682,-8.26805,-182.41,-172.418,-194.856 0|0:79:39,4,13,21:39:1513:4,13,21:152,490,809:-54.6928,-55.0439,-178.155,-26.3507,-139.277,-146.754,0,-112.933,-84.2409,-118.001 0|0:79:70,2,1,2:70:2715:2,1,2:80,39,78:0,-14.4804,-236.935,-17.8668,-234.331,-240.621,-14.6616,-231.125,-234.51,-237.114 dDocent_Contig_562 15 . T A 2632.75 . AB=0.514706;ABP=3.3935;AC=3;AF=0.5;AN=6;AO=105;CIGAR=1X;DP=204;DPB=204;DPRA=0;EPP=231.015;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=45.8;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.695238;PAIREDR=0.939394;PAO=0;PQA=0;PQR=0;PRO=0;QA=3833;QR=3939;RO=99;RPL=0;RPP=231.015;RPPR=217.986;RPR=105;RUN=1;SAF=105;SAP=231.015;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:86:30,56:30:1189:56:2049:-149.176,0,-81.3982 0/1:41:18,23:18:730:23:841:-59.4845,0,-53.6826 0/1:77:51,26:51:2020:26:943:-60.1372,0,-158.81 dDocent_Contig_563 201 . G T 158.021 . AB=0.347826;ABP=7.63648;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=33;DPB=33;DPRA=1.15;EPP=20.3821;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=284;QR=894;RO=25;RPL=8;RPP=20.3821;RPPR=57.2971;RPR=0;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:9,6:9:320:6:216:-15.2741,0,-24.6271 0/1:8:6,2:6:219:2:68:-4.04964,0,-17.656 0/0:10:10,0:10:355:0:0:0,-3.0103,-32.2888 dDocent_Contig_565 42 . C T 2639.68 . AB=0.5625;ABP=8.43898;AC=3;AF=0.5;AN=6;AO=90;CIGAR=1X;DP=160;DPB=160;DPRA=0;EPP=198.443;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.988889;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3520;QR=2761;RO=70;RPL=0;RPP=198.443;RPPR=155.013;RPR=90;RUN=1;SAF=90;SAP=198.443;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:63:29,34:29:1161:34:1327:-100.739,0,-85.806 0/1:70:26,44:26:1020:44:1723:-134.232,0,-71.024 0/1:27:15,12:15:580:12:470:-34.5209,0,-44.4052 dDocent_Contig_566 17 . A C 419.986 . AB=0.320755;ABP=17.8009;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=78;DPB=78;DPRA=1.06;EPP=39.9253;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=675;QR=2440;RO=61;RPL=0;RPP=39.9253;RPPR=135.47;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:1009:0:0:0,-7.52575,-91.1056 0/1:26:16,10:16:628:10:392:-27.8063,0,-49.0283 0/1:27:20,7:20:803:7:283:-17.7152,0,-64.4584 dDocent_Contig_567 42 . C G 618.061 . AB=0.288889;ABP=37.8504;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X;DP=90;DPB=90;DPRA=0;EPP=59.4686;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1037;QR=2555;RO=64;RPL=0;RPP=59.4686;RPPR=141.985;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:23,6:23:925:6:240:-13.2453,0,-74.8234 0/1:33:26,7:26:1027:7:282:-15.8186,0,-82.7937 0/1:28:15,13:15:603:13:515:-38.2651,0,-46.18 dDocent_Contig_568 16 . T C 5169.62 . AB=0.765258;ABP=133.187;AC=3;AF=0.5;AN=6;AO=163;CIGAR=1X;DP=213;DPB=213;DPRA=0;EPP=356.96;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6512;QR=2004;RO=50;RPL=0;RPP=356.96;RPPR=111.584;RPR=163;RUN=1;SAF=163;SAP=356.96;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:72:16,56:16:638:56:2249:-180.904,0,-36.0811 0/1:67:20,47:20:804:47:1857:-147.173,0,-52.5066 0/1:74:14,60:14:562:60:2406:-194.408,0,-28.6441 dDocent_Contig_569 40 . C G 222.492 . AB=0.196721;ABP=51.7438;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=80;DPB=80;DPRA=1.60526;EPP=29.068;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=482;QR=2692;RO=68;RPL=0;RPP=29.068;RPPR=150.67;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:21,8:21:832:8:320:-20.438,0,-66.4643 0/0:19:19,0:19:750:0:0:0,-5.71957,-67.8234 0/1:32:28,4:28:1110:4:162:-5.334,0,-90.5527 dDocent_Contig_571 15 . C A 43.2173 . AB=0.137931;ABP=36.0317;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=88;DPB=88;DPRA=1.33333;EPP=16.0391;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.1707;NS=3;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=0.939024;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=3286;RO=82;RPL=0;RPP=16.0391;RPPR=181.071;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:35:33,2:33:1322:2:80:0,-2.94447,-111.651 0/1:29:25,4:25:993:4:161:-6.14561,0,-80.5574 0/0:24:24,0:24:971:0:0:0,-7.22472,-86.9876 dDocent_Contig_572 41 . G A 35.4767 . AB=0.25;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=24;DPB=24;DPRA=1;EPP=7.35324;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=882;RO=22;RPL=0;RPP=7.35324;RPPR=50.7827;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:354:0:0:0,-2.70927,-32.2193 0/1:8:6,2:6:244:2:82:-5.37144,0,-19.9306 0/0:7:7,0:7:284:0:0:0,-2.10721,-25.934 dDocent_Contig_573 22 . C A 32.5075 . AB=0.15;ABP=24.2907;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=62;DPB=62;DPRA=0.952381;EPP=9.52472;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=2366;RO=59;RPL=0;RPP=9.52472;RPPR=131.127;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:797:0:0:0,-6.0206,-72.0432 0/0:22:22,0:22:882:0:0:0,-6.62266,-79.6896 0/1:20:17,3:17:687:3:119:-5.07441,0,-56.1368 dDocent_Contig_575 98 . N A 249.784 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=22.5536;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=261;QR=0;RO=0;RPL=9;RPP=22.5536;RPPR=0;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:77:-7.1855,-0.90309,0 1/1:4:0,4:0:0:4:114:-10.543,-1.20412,0 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 dDocent_Contig_576 98 . N G 1497 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=59;CIGAR=1X;DP=59;DPB=59;DPRA=0;EPP=131.127;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=58.678;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1656;QR=0;RO=0;RPL=59;RPP=131.127;RPPR=0;RPR=0;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:20:0,20:0:0:20:567:-50.6718,-6.0206,0 1/1:29:0,29:0:0:29:797:-71.9854,-8.72987,0 1/1:10:0,10:0:0:10:292:-26.5658,-3.0103,0 dDocent_Contig_577 108 . N T 328.877 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=12;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=29.068;EPPR=0;GTI=0;LEN=1;MEANALT=1.33333;MQM=35;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=406;QR=0;RO=0;RPL=12;RPP=29.068;RPPR=0;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:34:-1.78939,-0.30103,0 1/1:1:0,1:0:0:1:35:-3.3807,-0.30103,0 1/1:11:0,10:0:0:10:337:-27.1126,-3.0103,0 dDocent_Contig_580 30 . G A 2213.6 . AB=0.147783;ABP=2409.16;AC=3;AF=0.5;AN=6;AO=330;CIGAR=1X;DP=2233;DPB=2233;DPRA=0;EPP=719.596;EPPR=3968.14;GTI=0;LEN=1;MEANALT=3;MQM=31.8091;MQMR=27.837;NS=3;NUMALT=1;ODDS=1.11022e-16;PAIRED=1;PAIREDR=0.998909;PAO=0;PQA=0;PQR=0;PRO=0;QA=13083;QR=72586;RO=1834;RPL=0;RPP=719.596;RPPR=3985.49;RPR=330;RUN=1;SAF=330;SAP=719.596;SAR=0;SRF=1832;SRP=3968.14;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:534:442,73:442:17449:73:2877:-40.2722,0,-879.88 0/1:681:559,95:559:22059:95:3751:-55.8964,0,-1213.27 0/1:1018:833,162:833:33078:162:6455:-130.715,0,-1601.8 dDocent_Contig_581 17 . G A 2469.39 . 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A T 3669.33 . AB=0.275194;ABP=229.517;AC=3;AF=0.5;AN=6;AO=142;CIGAR=1M1X3M;DP=516;DPB=518.6;DPRA=0;EPP=14.9993;EPPR=251.91;GTI=0;LEN=1;MEANALT=11.6667;MQM=29.5141;MQMR=57.0126;NS=3;NUMALT=2;ODDS=0;PAIRED=0.732394;PAIREDR=0.836478;PAO=1.66667;PQA=45.6667;PQR=45.6667;PRO=1.66667;QA=3856;QR=6219;RO=159;RPL=26;RPP=126.876;RPPR=348.274;RPR=116;RUN=1;SAF=39;SAP=65.6466;SAR=103;SRF=12;SRP=251.91;SRR=147;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:105:20,43,21:20:773:43,21:1661,464:-115.843,0,-50.5837,-90.9609,-32.6429,-148.138 0|1:151:44,43,46:44:1717:43,46:1697,1363:-111.294,0,-128.228,-24.4818,-41.1246,-151.784 0|1:260:95,63,75:95:3729:63,75:2477,2029:-145.318,0,-272.624,-29.6974,-147.378,-298.679 dDocent_Contig_592 85 . C A 46.33 . AB=0.16;ABP=28.1125;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=88;DPB=88;DPRA=0.757143;EPP=13.8677;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=183;QR=2982;RO=83;RPL=5;RPP=13.8677;RPPR=183.243;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:21,4:21:750:4:148:-6.15587,0,-60.2965 0/0:35:35,0:35:1265:0:0:0,-10.536,-114.152 0/0:28:27,1:27:967:1:35:0,-4.93021,-83.849 dDocent_Contig_593 12 . T C 33.5962 . AB=0.25;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=43;DPB=43;DPRA=0.457143;EPP=7.35324;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=1525;RO=41;RPL=0;RPP=7.35324;RPPR=92.0407;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:751:0:0:0,-6.0206,-67.9156 0/0:15:15,0:15:549:0:0:0,-4.51545,-49.7428 0/1:8:6,2:6:225:2:80:-5.18333,0,-18.2029 dDocent_Contig_595 56 . A G 237.566 . AB=0.294118;ABP=15.5282;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=67;DPB=67;DPRA=2.06061;EPP=24.725;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.982456;PAO=0;PQA=0;PQR=0;PRO=0;QA=394;QR=2232;RO=57;RPL=10;RPP=24.725;RPPR=126.784;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:879:0:0:0,-6.62266,-79.4178 0/1:34:24,10:24:930:10:394:-25.5805,0,-73.7633 0/0:11:11,0:11:423:0:0:0,-3.31133,-38.4125 dDocent_Contig_596 48 . C G 2494.29 . AB=0.604317;ABP=16.1485;AC=3;AF=0.5;AN=6;AO=84;CIGAR=1X;DP=139;DPB=139;DPRA=0;EPP=152.325;EPPR=76.0113;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.97619;PAIREDR=0.890909;PAO=0;PQA=0;PQR=0;PRO=0;QA=3288;QR=2146;RO=55;RPL=4;RPP=152.325;RPPR=76.0113;RPR=80;RUN=1;SAF=84;SAP=185.414;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:9,38:9:355:38:1473:-118.682,0,-18.163 0/1:34:17,17:17:650:17:683:-51.5666,0,-48.5915 0/1:58:29,29:29:1141:29:1132:-84.7034,0,-85.5163 dDocent_Contig_598 27 . T C 121.723 . AB=0.115702;ABP=158.226;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=169;DPB=169;DPRA=0;EPP=39.9253;EPPR=333.074;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=676;QR=6006;RO=152;RPL=0;RPP=39.9253;RPPR=333.074;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=152;SRP=333.074;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:41,8:41:1617:8:312:-13.6898,0,-131.016 0/0:48:45,3:45:1778:3:121:0,-3.16945,-148.965 0/1:72:66,6:66:2611:6:243:-0.573437,0,-213.447 dDocent_Contig_599 29 . T C 155.272 . AB=0.296296;ABP=12.7417;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=47;DPB=47;DPRA=0.675;EPP=20.3821;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=294;QR=1484;RO=39;RPL=0;RPP=20.3821;RPPR=87.6977;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:9,5:9:335:5:178:-12.1465,0,-26.2856 0/0:20:20,0:20:751:0:0:0,-6.0206,-67.907 0/1:13:10,3:10:398:3:116:-6.9036,0,-32.266 dDocent_Contig_600 72 . T C 165.887 . AB=0.538462;ABP=3.17734;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=37;DPB=37;DPRA=1.08333;EPP=18.2106;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.966667;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=1182;RO=30;RPL=7;RPP=18.2106;RPPR=68.1545;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:6,7:6:236:7:241:-18.1116,0,-17.6985 0/0:14:14,0:14:554:0:0:0,-4.21442,-50.1999 0/0:10:10,0:10:392:0:0:0,-3.0103,-35.6332 dDocent_Contig_604 1 . N G 261.555 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=57.1429;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.714286;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=274;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:119:-11.0945,-0.90309,0 1/1:1:0,1:0:0:1:34:-3.30271,-0.30103,0 1/1:3:0,3:0:0:3:121:-11.28,-0.90309,0 dDocent_Contig_607 16 . A T 46.4187 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=5;DPB=5;DPRA=3;EPP=9.52472;EPPR=7.35324;GTI=0;LEN=1;MEANALT=1;MQM=16;MQMR=24;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=103;QR=74;RO=2;RPL=0;RPP=9.52472;RPPR=7.35324;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=2;SRP=7.35324;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1,0:1:33:0:0:0,-0.30103,-2.07363 1/1:3:0,3:0:0:3:103:-4.46263,-0.90309,0 0/0:1:1,0:1:41:0:0:0,-0.30103,-2.68308 dDocent_Contig_609 98 . N A 93.312 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=100;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:100:-9.33066,-0.90309,0 dDocent_Contig_610 19 . A T 54.565 . AB=0.190476;ABP=20.4855;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=35;DPB=35;DPRA=0;EPP=13.8677;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=1181;RO=30;RPL=0;RPP=13.8677;RPPR=68.1545;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:13,1:13:505:1:39:0,-0.317855,-41.8927 0/1:14:11,3:11:435:3:122:-7.15807,0,-35.2884 0/1:7:6,1:6:241:1:41:-1.98736,0,-19.9595 dDocent_Contig_611 19 . T A 132.532 . AB=0.173913;ABP=45.4956;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=120;DPB=120;DPRA=1.375;EPP=24.725;EPPR=241.872;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=396;QR=4436;RO=110;RPL=0;RPP=24.725;RPPR=241.872;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=110;SRP=241.872;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:38,8:38:1524:8:314:-14.7761,0,-123.555 0/0:32:32,0:32:1297:0:0:0,-9.63296,-116.992 0/0:42:40,2:40:1615:2:82:0,-4.86358,-137.799 dDocent_Contig_612 31 . A G 35.2704 . AB=0.1875;ABP=16.582;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X1M1X;DP=40;DPB=40;DPRA=1.33333;EPP=9.52472;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=109;QR=1452;RO=37;RPL=0;RPP=9.52472;RPPR=83.3548;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:15:15,0:15:581:0:0:0,-4.51545,-52.6281 0|1:16:13,3:13:517:3:109:-5.35081,0,-42.0589 0|0:9:9,0:9:354:0:0:0,-2.70927,-32.2202 dDocent_Contig_613 23 . A G 38.0018 . AB=0.0961538;ABP=150.336;AC=1;AF=0.166667;AN=6;AO=26;CIGAR=1X;DP=306;DPB=306;DPRA=0;EPP=59.4686;EPPR=611.023;GTI=0;LEN=1;MEANALT=1;MQM=58.7308;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.961538;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1043;QR=11157;RO=280;RPL=0;RPP=59.4686;RPPR=611.023;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=280;SRP=611.023;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:104:94,10:94:3772:10:403:-5.32274,0,-308.178 0/0:135:124,11:124:4934:11:439:0,-0.772938,-404.073 0/0:67:62,5:62:2451:5:201:0,-2.73846,-203.31 dDocent_Contig_614 99 . N A 67.3839 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=9X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=17;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=151;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:76:-2.27806,-0.60206,0 1|1:2:0,2:0:0:2:75:-4.15706,-0.60206,0 .:.:.:.:.:.:.:. dDocent_Contig_616 8 . C T 324.904 . AB=0.378531;ABP=25.6942;AC=3;AF=0.5;AN=6;AO=67;CIGAR=2X1M;DP=177;DPB=176;DPRA=0;EPP=148.499;EPPR=215.815;GTI=0;LEN=1;MEANALT=2.33333;MQM=17.403;MQMR=58.7755;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.938776;PAO=0;PQA=0;PQR=0;PRO=0;QA=1166;QR=3683;RO=98;RPL=0;RPP=148.499;RPPR=215.815;RPR=67;RUN=1;SAF=67;SAP=148.499;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:53:24,3,25,1:24:909:3,25,1:116,455,39:-19.5247,-22.8006,-96.112,0,-70.3093,-66.7094,-23.5355,-93.8067,-71.028,-97.4479 0|1:62:29,0,25,5:29:1070:0,25,5:0,438,191:-16.4392,-25.169,-112.187,0,-86.9553,-79.4295,-9.4637,-96.5059,-71.2804,-95.0007 0|1:62:45,0,17,0:45:1704:0,17,0:0,273,0:-1.5577,-15.1041,-154.979,0,-140.074,-134.956,-15.1041,-154.979,-140.074,-154.979 dDocent_Contig_617 209 . N G 1182.69 . 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AB=0.192982;ABP=49.6779;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=29.068;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=26.8333;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.982456;PAO=0;PQA=0;PQR=0;PRO=0;QA=424;QR=2140;RO=57;RPL=12;RPP=29.068;RPPR=126.784;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:27,6:27:1017:6:225:-4.61591,0,-81.8959 0/0:12:11,1:11:431:1:39:0,-1.22583,-36.7555 0/1:24:19,5:19:692:5:160:-3.0442,0,-55.3716 dDocent_Contig_621 69 . G A 419.313 . AB=0.297297;ABP=29.4201;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1X;DP=74;DPB=74;DPRA=0;EPP=50.7827;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=763;QR=1795;RO=52;RPL=22;RPP=50.7827;RPPR=115.927;RPR=0;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:21,3:21:714:3:104:-2.4783,0,-57.352 0/1:24:13,11:13:453:11:381:-27.399,0,-33.878 0/1:26:18,8:18:628:8:278:-17.5312,0,-49.0202 dDocent_Contig_622 37 . T G 80.3859 . 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G A 2594.59 . AB=0.747748;ABP=62.1878;AC=3;AF=0.5;AN=6;AO=83;CIGAR=1X;DP=111;DPB=111;DPRA=0;EPP=183.243;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3304;QR=1076;RO=27;RPL=0;RPP=183.243;RPPR=61.6401;RPR=83;RUN=1;SAF=83;SAP=183.243;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:5,39:5:193:39:1550:-126.495,0,-4.49459 0/1:36:13,23:13:520:23:902:-70.6401,0,-36.3092 0/1:31:9,21:9:363:21:852:-67.8462,0,-23.8731 dDocent_Contig_632 17 . A G 44.4061 . AB=0.111111;ABP=73.9451;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=89;DPB=89;DPRA=3.08571;EPP=16.0391;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=246;QR=3311;RO=83;RPL=0;RPP=16.0391;RPPR=183.243;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:759:0:0:0,-5.71957,-68.6342 0/0:16:16,0:16:637:0:0:0,-4.81648,-57.6652 0/1:54:48,6:48:1915:6:246:-6.2645,0,-156.291 dDocent_Contig_634 16 . G T 362.452 . AB=0.253968;ABP=36.1339;AC=1;AF=0.166667;AN=6;AO=24;CIGAR=1X;DP=216;DPB=216;DPRA=0;EPP=55.1256;EPPR=419.933;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=912;QR=7583;RO=192;RPL=0;RPP=55.1256;RPPR=419.933;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=192;SRP=419.933;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:72:66,6:66:2595:6:200:0,-3.35696,-215.376 0/1:63:47,16:47:1845:16:630:-38.0692,0,-147.302 0/0:81:79,2:79:3143:2:82:0,-16.6038,-275.164 dDocent_Contig_635 23 . T C 22225.7 . AB=0.15531;ABP=2335.29;AC=3;AF=0.5;AN=6;AO=351;CIGAR=1X2M;DP=2260;DPB=2260;DPRA=0;EPP=765.197;EPPR=2350.38;GTI=0;LEN=1;MEANALT=6.33333;MQM=60;MQMR=59.9889;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.970507;PAO=0;PQA=0;PQR=0;PRO=0;QA=13811;QR=42507;RO=1085;RPL=0;RPP=765.197;RPPR=2341.72;RPR=351;RUN=1;SAF=351;SAP=765.197;SAR=0;SRF=1084;SRP=2350.38;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:821:393,275,129:393:15326:275,129:10761,5051:-766.439,0,-1176.88,-469.449,-844.372,-1690.28 0|1:502:245,162,90:245:9582:162,90:6370,3527:-450.196,0,-738.957,-233.944,-497.719,-994.574 0|1:937:447,354,132:447:17599:354,132:13932,5233:-1011.46,0,-1341.12,-715.285,-1016.96,-2123.24 dDocent_Contig_637 42 . C A 118.67 . AB=0.163265;ABP=51.2702;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=143;DPB=143;DPRA=1.54286;EPP=26.8965;EPPR=289.645;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.909091;PAO=0;PQA=0;PQR=0;PRO=0;QA=431;QR=5175;RO=132;RPL=0;RPP=26.8965;RPPR=289.645;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=132;SRP=289.645;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:59:56,3:56:2201:3:119:0,-6.66576,-187.175 0/1:49:41,8:41:1599:8:312:-13.6909,0,-129.399 0/0:35:35,0:35:1375:0:0:0,-10.536,-124.011 dDocent_Contig_638 7 . C T 4450.32 . AB=0.734266;ABP=71.1763;AC=4;AF=0.666667;AN=6;AO=147;CIGAR=1X;DP=188;DPB=188;DPRA=0;EPP=322.217;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5544;QR=1539;RO=41;RPL=0;RPP=322.217;RPPR=92.0407;RPR=147;RUN=1;SAF=147;SAP=322.217;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:68:13,55:13:497:55:2060:-165.169,0,-24.6068 1/1:45:3,42:3:87:42:1581:-134.448,-5.42893,0 0/1:75:25,50:25:955:50:1903:-148.938,0,-63.6874 dDocent_Contig_640 22 . G A 5082.23 . AB=0.527778;ABP=5.18177;AC=3;AF=0.5;AN=6;AO=171;CIGAR=1X;DP=324;DPB=324;DPRA=0;EPP=374.332;EPPR=333.074;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6787;QR=6009;RO=152;RPL=0;RPP=374.332;RPPR=333.074;RPR=171;RUN=1;SAF=171;SAP=374.332;SAR=0;SRF=152;SRP=333.074;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:112:65,47:65:2546:47:1870:-134.794,0,-195.572 0/1:67:24,43:24:949:43:1704:-133.413,0,-65.5407 0/1:145:63,81:63:2514:81:3213:-245.539,0,-182.705 dDocent_Contig_642 56 . T A 361.798 . AB=0.18;ABP=47.4821;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=22M1X2M1X;DP=113;DPB=109.346;DPRA=0;EPP=22.5536;EPPR=168.042;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=350;QR=2961;RO=76;RPL=0;RPP=22.5536;RPPR=168.042;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:50:34,9,0,0,0,6:34:1326:9,0,0,0,6:350,0,0,0,238:-18.5245,0,-106.281,-28.7595,-108.99,-137.752,-28.7595,-108.99,-137.752,-137.752,-28.7595,-108.99,-137.752,-137.752,-137.752,-9.1646,-89.3971,-118.16,-118.16,-118.16,-116.353 0|0:23:21,0,0,0,2,0:21:822:0,0,0,2,0:0,0,0,78,0:-0.479611,-6.80124,-74.3913,-6.80124,-74.3913,-74.3913,-6.80124,-74.3913,-74.3913,-74.3913,0,-67.9798,-67.9798,-67.9798,-67.3778,-6.80124,-74.3913,-74.3913,-74.3913,-67.9798,-74.3913 0|0:40:21,0,3,4,9,2:21:813:0,3,4,9,2:0,119,159,336,72:-21.1738,-27.4954,-94.279,-17.6966,-84.482,-83.5789,-14.4006,-81.1869,-71.3896,-79.9827,0,-66.779,-56.9821,-53.6869,-64.0698,-21.6232,-88.4055,-78.6085,-75.3134,-60.9061,-87.8034 dDocent_Contig_643 69 . C T 163.488 . AB=0.258065;ABP=18.771;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=43;DPB=43;DPRA=1.29167;EPP=20.3821;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=316;QR=1380;RO=35;RPL=8;RPP=20.3821;RPPR=79.0118;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:7,3:7:277:3:122:-8.36219,0,-22.2894 0/0:12:12,0:12:467:0:0:0,-3.61236,-42.3795 0/1:21:16,5:16:636:5:194:-11.5095,0,-51.2474 dDocent_Contig_645 31 . C G 165.167 . AB=0.148649;ABP=82.3571;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=187;DPB=187;DPRA=1.30973;EPP=26.8965;EPPR=385.189;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=444;QR=7064;RO=176;RPL=0;RPP=26.8965;RPPR=385.189;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=176;SRP=385.189;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:74:63,11:63:2489:11:444:-18.0396,0,-201.882 0/0:53:53,0:53:2135:0:0:0,-15.9546,-192.327 0/0:60:60,0:60:2440:0:0:0,-18.0618,-219.729 dDocent_Contig_646 111 . C T 53.0927 . AB=0.210526;ABP=16.8392;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=48;DPB=48;DPRA=1.34615;EPP=13.8677;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=173;QR=1463;RO=43;RPL=0;RPP=13.8677;RPPR=96.3836;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=96.3836;SRR=43;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:448:0:0:0,-3.91339,-40.6496 0/0:16:15,1:15:511:1:34:0,-1.41757,-42.9153 0/1:19:15,4:15:504:4:139:-7.13312,0,-39.96 dDocent_Contig_647 107 . N T 164.341 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=166;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:66:-6.15911,-0.90309,0 1/1:2:0,2:0:0:2:65:-6.17329,-0.60206,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_648 12 . A T 1490.73 . AB=0.311828;ABP=60.2158;AC=3;AF=0.5;AN=6;AO=58;CIGAR=1X3M;DP=186;DPB=186;DPRA=0;EPP=128.956;EPPR=263.587;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2316;QR=4713;RO=120;RPL=0;RPP=128.956;RPPR=263.587;RPR=58;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:44:29,3,11:29:1122:3,11:120,433:-26.8765,-25.7201,-116.965,0,-82.2533,-88.8283 0|1:69:43,1,25:43:1676:1,25:41,995:-68.9681,-78.5278,-215.974,0,-134.348,-130.207 0|1:73:48,3,22:48:1915:3,22:121,888:-58.7516,-63.2268,-220.029,0,-147.729,-151.081 dDocent_Contig_649 20 . G A 79608.9 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=2448;CIGAR=1X;DP=2636;DPB=2636;DPRA=0;EPP=5258.15;EPPR=326.56;GTI=0;LEN=1;MEANALT=2.33333;MQM=56.7051;MQMR=57.396;NS=3;NUMALT=1;ODDS=0;PAIRED=0.665441;PAIREDR=0.395973;PAO=0;PQA=0;PQR=0;PRO=0;QA=95108;QR=5965;RO=149;RPL=0;RPP=5318.77;RPPR=326.56;RPR=2448;RUN=1;SAF=2441;SAP=5258.15;SAR=7;SRF=149;SRP=326.56;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1130:61,1061:61:2448:1061:41216:-3452.29,-118.677,0 1/1:952:52,882:52:2067:882:34139:-2872.31,-98.7563,0 1/1:554:36,505:36:1450:505:19753:-1635.81,-37.1695,0 dDocent_Contig_650 42 . T G 3983.9 . AB=0.788889;ABP=68.251;AC=4;AF=0.666667;AN=6;AO=122;CIGAR=1X;DP=142;DPB=142;DPRA=0;EPP=267.93;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4802;QR=794;RO=20;RPL=0;RPP=267.93;RPPR=46.4397;RPR=122;RUN=1;SAF=122;SAP=267.93;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:52:1,51:1:39:51:1973:-173.883,-11.757,0 0/1:37:11,26:11:431:26:1027:-81.5904,0,-28.006 0/1:53:8,45:8:324:45:1802:-146.44,0,-13.5742 dDocent_Contig_651 8 . C T 356.592 . AB=0.0638298;ABP=158.34;AC=0;AF=0;AN=6;AO=7;CIGAR=1X3M1X2M2X;DP=137;DPB=137;DPRA=0;EPP=18.2106;EPPR=194.1;GTI=0;LEN=1;MEANALT=4.66667;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=3450;RO=88;RPL=0;RPP=18.2106;RPPR=194.1;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:43:35,1,3,1,0:35:1374:1,3,1,0:40,116,38,0:0,-7.23848,-119.954,-1.00558,-110.728,-113.12,-7.41989,-117.139,-110.907,-120.133,-10.536,-120.255,-114.023,-120.434,-123.551 0|0:39:22,5,5,5,2:22:853:5,5,5,2:194,203,201,81:-10.1225,-0.810504,-69.3752,0,-54.1358,-68.5695,-0.179853,-54.3147,-53.5086,-68.7483,-10.0652,-64.2005,-63.3946,-63.5735,-79.5371 0|0:55:31,1,12,2,7:31:1223:1,12,2,7:39,466,77,279:-28.955,-35.0812,-135.411,0,-97.4232,-97.0166,-31.9661,-129.391,-94.3079,-131.995,-15.3095,-112.737,-77.6535,-109.621,-113.835 dDocent_Contig_652 53 . C T 36.2807 . AB=0.125;ABP=42.0968;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=65;DPB=65;DPRA=1.93939;EPP=11.6962;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=2425;RO=61;RPL=4;RPP=11.6962;RPPR=135.47;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:28,4:28:1120:4:160:-5.15084,0,-91.4536 0/0:16:16,0:16:647:0:0:0,-4.81648,-58.5635 0/0:17:17,0:17:658:0:0:0,-5.11751,-59.5429 dDocent_Contig_653 64 . T G 715.975 . AB=0.541667;ABP=3.73412;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X;DP=48;DPB=48;DPRA=0;EPP=43.4331;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=58.8077;MQMR=59.5909;NS=3;NUMALT=1;ODDS=0;PAIRED=0.884615;PAIREDR=0.909091;PAO=0;PQA=0;PQR=0;PRO=0;QA=1016;QR=859;RO=22;RPL=26;RPP=59.4686;RPPR=50.7827;RPR=0;RUN=1;SAF=24;SAP=43.4331;SAR=2;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:5,10:5:200:10:390:-29.9936,0,-13.8645 0/1:15:9,6:9:340:6:231:-16.6401,0,-26.4012 0/1:18:8,10:8:319:10:395:-30.4866,0,-23.658 dDocent_Contig_654 163 . G A 37.5471 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=27;DPB=27;DPRA=0.7;EPP=7.35324;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=972;RO=25;RPL=2;RPP=7.35324;RPPR=57.2971;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:526:0:0:0,-4.21442,-47.6644 0/0:6:6,0:6:242:0:0:0,-1.80618,-22.1573 0/1:7:5,2:5:204:2:81:-5.57852,0,-16.6368 dDocent_Contig_655 52 . T C 1243.27 . AB=0.361538;ABP=24.6582;AC=3;AF=0.5;AN=6;AO=47;CIGAR=1X2M1X;DP=130;DPB=130;DPRA=0;EPP=105.07;EPPR=178.9;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1863;QR=3136;RO=81;RPL=47;RPP=105.07;RPPR=178.9;RPR=0;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:56:42,13:42:1621:13:515:-30.0301,0,-129.495 0|1:30:20,9:20:773:9:352:-23.1282,0,-60.9961 0|1:44:19,25:19:742:25:996:-76.6912,0,-53.8635 dDocent_Contig_657 34 . C T 76.9507 . AB=0.14;ABP=59.2949;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=110;DPB=110;DPRA=1.39655;EPP=22.5536;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.333333;PAIREDR=0.920792;PAO=0;PQA=0;PQR=0;PRO=0;QA=348;QR=4022;RO=101;RPL=0;RPP=22.5536;RPPR=222.329;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:29,2:29:1144:2:79:0,-1.83469,-95.7518 0/1:50:43,7:43:1702:7:269:-9.51895,0,-138.357 0/0:29:29,0:29:1176:0:0:0,-8.72987,-106.115 dDocent_Contig_658 204 . C T 164.343 . AB=0.307692;ABP=11.3621;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=69;DPB=69;DPRA=1.8;EPP=22.5536;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=323;QR=2149;RO=60;RPL=9;RPP=22.5536;RPPR=133.299;RPR=0;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=133.299;SRR=60;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:534:0:0:0,-4.51545,-48.3936 0/1:26:18,8:18:634:8:286:-18.2583,0,-49.56 0/0:28:27,1:27:981:1:37:0,-4.73101,-84.9088 dDocent_Contig_659 7 . T C 121.17 . AB=0.16;ABP=28.1125;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=2X;DP=63;DPB=63;DPRA=1.19048;EPP=11.6962;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=152;QR=2089;RO=55;RPL=0;RPP=11.6962;RPPR=122.441;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:21:21,0,0:21:787:0,0:0,0:0,-6.32163,-71.1519,-6.32163,-71.1519,-71.1519 0|1:25:21,4,0:21:804:4,0:152,0:-6.52388,0,-65.1601,-12.8455,-66.3642,-78.8295 0|0:17:13,0,4:13:498:0,4:0,154:-9.11595,-13.0293,-53.8984,0,-41.2533,-40.0491 dDocent_Contig_660 140 . G A 5810.71 . AB=0.896552;ABP=82.2316;AC=5;AF=0.833333;AN=6;AO=183;CIGAR=1M1X;DP=194;DPB=194;DPRA=0;EPP=400.39;EPPR=26.8965;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6841;QR=412;RO=11;RPL=0;RPP=400.39;RPPR=26.8965;RPR=183;RUN=1;SAF=0;SAP=400.39;SAR=183;SRF=0;SRP=26.8965;SRR=11;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:69:0,69:0:0:69:2573:-231.769,-20.7711,0 1|1:67:5,62:5:177:62:2266:-187.882,-3.89614,0 0|1:58:6,52:6:235:52:2002:-162.94,0,-4.06205 dDocent_Contig_661 8 . C A 141.373 . AB=0.166667;ABP=66.7068;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=100;DPB=100;DPRA=0.970588;EPP=26.8965;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=409;QR=3431;RO=89;RPL=0;RPP=26.8965;RPPR=196.271;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:31,6:31:1191:6:225:-9.47285,0,-96.3499 0/1:29:24,5:24:918:5:184:-8.18731,0,-74.206 0/0:34:34,0:34:1322:0:0:0,-10.235,-119.266 dDocent_Contig_662 183 . A T 123.533 . AB=0.230769;ABP=19.3799;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=122;DPB=122;DPRA=0.541667;EPP=16.0391;EPPR=254.901;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=237;QR=4195;RO=116;RPL=6;RPP=16.0391;RPPR=254.901;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=254.901;SRR=116;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:20,6:20:751:6:237:-13.8762,0,-60.0834 0/0:35:35,0:35:1131:0:0:0,-10.536,-102.047 0/0:61:61,0:61:2313:0:0:0,-18.3628,-208.385 dDocent_Contig_663 36 . C G 859.039 . AB=0.0909091;ABP=242.859;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X1M;DP=165;DPB=165;DPRA=0;EPP=35.5824;EPPR=246.215;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=589;QR=4414;RO=112;RPL=0;RPP=35.5824;RPPR=246.215;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:50:28,19,3:28:1107:19,3:718,119:-50.3991,0,-85.3713,-49.0297,-81.295,-139.229 0|1:61:47,6,8:47:1835:6,8:229,306:-10.9586,-6.31983,-155.361,0,-132.062,-148.44 0|1:54:37,13,4:37:1472:13,4:502,164:-30.069,0,-117.273,-27.6653,-107.649,-147.667 dDocent_Contig_664 27 . A G 2122.31 . AB=0.209677;ABP=48.4011;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X2M1X;DP=205;DPB=205;DPRA=0;EPP=31.2394;EPPR=259.244;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=514;QR=4667;RO=118;RPL=0;RPP=31.2394;RPPR=259.244;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=118;SRP=259.244;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:79:52,0,27:52:2060:0,27:0,1020:-68.3079,-83.9614,-253.528,0,-169.95,-161.823 0|0:64:25,0,39:25:979:0,39:0,1539:-119.492,-127.017,-207.515,0,-80.8899,-69.1497 0|1:62:41,13,8:41:1628:13,8:514,320:-29.9542,0,-130.108,-15.9371,-107.663,-147.554 dDocent_Contig_665 13 . A C 353.776 . AB=0.307692;ABP=19.7139;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=52;DPB=52;DPRA=0;EPP=37.7539;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=616;QR=1333;RO=36;RPL=0;RPP=37.7539;RPPR=81.1833;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:16,10:16:589:10:385:-27.1781,0,-45.5161 0/1:13:11,2:11:400:2:78:-3.48991,0,-32.4295 0/1:13:9,4:9:344:4:153:-10.2278,0,-27.4045 dDocent_Contig_666 19 . C G 2705.2 . AB=0.486772;ABP=3.29753;AC=3;AF=0.5;AN=6;AO=92;CIGAR=1X;DP=189;DPB=189;DPRA=0;EPP=202.786;EPPR=209.3;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3688;QR=3815;RO=95;RPL=0;RPP=202.786;RPPR=209.3;RPR=92;RUN=1;SAF=92;SAP=202.786;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:20,38:20:805:38:1510:-118.683,0,-55.305 0/1:70:34,36:34:1359:36:1451:-109.761,0,-101.496 0/1:61:41,18:41:1651:18:727:-47.5983,0,-130.66 dDocent_Contig_667 16 . A G 59.9448 . AB=0.038961;ABP=145.171;AC=0;AF=0;AN=6;AO=5;CIGAR=2X2M2X;DP=173;DPB=173;DPRA=0.735714;EPP=13.8677;EPPR=317.874;GTI=0;LEN=1;MEANALT=3;MQM=58.4;MQMR=60;NS=3;NUMALT=4;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.931034;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=5628;RO=145;RPL=0;RPP=13.8677;RPPR=317.874;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=145;SRP=317.874;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:70:64,0,1,4,1:64:2497:0,1,4,1:0,40,160,39:0,-19.2659,-224.512,-15.9705,-221.217,-220.916,-6.0825,-211.331,-208.036,-210.127,-16.0617,-221.306,-218.011,-208.125,-221.005 0|0:77:58,3,7,0,8:58:2232:3,7,0,8:114,282,0,308:-7.81651,-15.9298,-198.257,-2.02684,-175.915,-183.157,-25.2762,-199.16,-185.264,-208.509,0,-173.879,-159.983,-183.228,-180.819 0|0:26:23,2,0,0,0:23:899:2,0,0,0:79,0,0,0:0,-0.4468,-73.7445,-6.92369,-74.3466,-80.8277,-6.92369,-74.3466,-80.8277,-80.8277,-6.92369,-74.3466,-80.8277,-80.8277,-80.8277 dDocent_Contig_668 21 . A C 3310.02 . AB=0.697368;ABP=54.4399;AC=3;AF=0.5;AN=6;AO=106;CIGAR=1X;DP=152;DPB=152;DPRA=0;EPP=233.186;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4239;QR=1813;RO=46;RPL=0;RPP=233.186;RPPR=102.898;RPR=106;RUN=1;SAF=106;SAP=233.186;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:9,37:9:350:37:1467:-118.439,0,-18.0109 0/1:60:22,38:22:867:38:1532:-120.06,0,-60.2804 0/1:46:15,31:15:596:31:1240:-98.0266,0,-40.1318 dDocent_Contig_669 48 . T C 212.988 . AB=0.178082;ABP=68.7196;AC=1;AF=0.166667;AN=6;AO=18;CIGAR=1X2M1X;DP=221;DPB=221;DPRA=1.125;EPP=42.0968;EPPR=443.819;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=688;QR=7988;RO=203;RPL=18;RPP=42.0968;RPPR=443.819;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=203;SRP=443.819;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:73:60,13:60:2361:13:494:-22.8216,0,-190.695 0|0:80:75,5:75:2946:5:194:0,-6.25026,-247.425 0|0:68:68,0:68:2681:0:0:0,-20.47,-241.432 dDocent_Contig_670 209 . N G 137.715 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=149;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:149:-13.7712,-1.20412,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_674 7 . T A 425.43 . AB=0.171429;ABP=101.471;AC=1;AF=0.166667;AN=6;AO=22;CIGAR=3M1X5M;DP=168;DPB=162.667;DPRA=0;EPP=50.7827;EPPR=263.587;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=840;QR=4599;RO=120;RPL=0;RPP=50.7827;RPPR=263.587;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:63:58,0,0,4:58:2215:0,0,4:0,0,152:0,-17.4597,-199.197,-17.4597,-199.197,-199.197,-4.98643,-186.732,-186.732,-185.528 0|1:73:44,0,11,15:44:1687:0,11,15:0,403,572:-33.6861,-46.9314,-185.402,-13.9977,-152.465,-149.154,0,-138.477,-105.542,-133.962 0|0:32:18,5,6,3:18:697:5,6,3:185,218,116:-12.3795,-2.66334,-58.4273,0,-42.1342,-55.4598,-8.26544,-50.4036,-47.7374,-64.6337 dDocent_Contig_675 209 . N G 112.807 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:121:-11.2802,-0.90309,0 dDocent_Contig_676 70 . G T 48.4229 . AB=0.173913;ABP=24.253;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=115;DPB=115;DPRA=0.5;EPP=11.6962;EPPR=244.044;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=147;QR=4134;RO=111;RPL=4;RPP=11.6962;RPPR=244.044;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=111;SRP=244.044;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:46:46,0:46:1712:0:0:0,-13.8474,-154.342 0/0:46:46,0:46:1727:0:0:0,-13.8474,-155.696 0/1:23:19,4:19:695:4:147:-6.66619,0,-55.9574 dDocent_Contig_677 34 . G A 87493.2 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=2562;CIGAR=1X;DP=2629;DPB=2629;DPRA=0;EPP=5540.3;EPPR=124.613;GTI=0;LEN=1;MEANALT=2.66667;MQM=59.6932;MQMR=60;NS=3;NUMALT=1;ODDS=2.77556e-17;PAIRED=0.825527;PAIREDR=0.821429;PAO=0;PQA=0;PQR=0;PRO=0;QA=99851;QR=2220;RO=56;RPL=0;RPP=5566.32;RPPR=124.613;RPR=2562;RUN=1;SAF=2559;SAP=5540.3;SAR=3;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:863:15,846:15:564:846:32853:-2887.53,-208.309,0 1/1:854:15,834:15:603:834:32483:-2854.44,-201.218,0 1/1:912:26,882:26:1053:882:34515:-3006.74,-178.484,0 dDocent_Contig_679 41 . C T 1209.89 . AB=0.38806;ABP=10.3026;AC=2;AF=0.333333;AN=6;AO=26;CIGAR=2X;DP=67;DPB=67;DPRA=0;EPP=59.4686;EPPR=35.5824;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1046;QR=605;RO=15;RPL=0;RPP=59.4686;RPPR=35.5824;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:14:0,9,5:0:0:9,5:362,198:-46.5285,-16.6919,-13.9826,-30.2344,0,-28.7293 0|1:27:8,12,7:8:324:12,7:484,281:-37.4894,0,-23.1062,-16.7443,-3.56619,-41.3544 0|0:26:7,5,14:7:281:5,14:200,543:-42.4936,-28.1228,-49.7756,0,-6.68007,-18.9399 dDocent_Contig_680 21 . A G 312.654 . AB=0.238806;ABP=42.7126;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=109;DPB=109;DPRA=0;EPP=42.0968;EPPR=198.443;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=686;QR=3596;RO=90;RPL=0;RPP=42.0968;RPPR=198.443;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:40,2:40:1598:2:82:0,-4.86358,-136.278 0/1:30:21,8:21:853:8:318:-19.8557,0,-67.9513 0/1:37:29,8:29:1145:8:286:-14.9325,0,-92.1934 dDocent_Contig_681 167 . G A 110.459 . AB=0.277778;ABP=10.7311;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=76;DPB=76;DPRA=0.62069;EPP=13.8677;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=2867;RO=71;RPL=5;RPP=13.8677;RPPR=157.185;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=157.185;SRR=71;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:34,0:34:1368:0:0:0,-10.235,-123.378 0/1:18:13,5:13:526:5:199:-12.8698,0,-42.2678 0/0:24:24,0:24:973:0:0:0,-7.22472,-87.8675 dDocent_Contig_682 33 . G A 250.502 . AB=0.24;ABP=32.3686;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=171;DPB=171;DPRA=0.925;EPP=31.2394;EPPR=346.103;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=502;QR=6157;RO=158;RPL=0;RPP=31.2394;RPPR=346.103;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=158;SRP=346.103;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:61:60,1:60:2350:1:40:0,-14.3671,-207.669 0/1:50:38,12:38:1458:12:462:-26.8741,0,-116.418 0/0:60:60,0:60:2349:0:0:0,-18.0618,-211.568 dDocent_Contig_683 9 . T A 773.851 . AB=0.361702;ABP=18.6264;AC=3;AF=0.5;AN=6;AO=34;CIGAR=1X;DP=94;DPB=94;DPRA=0;EPP=76.8404;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=50.5;MQMR=58.4833;NS=3;NUMALT=1;ODDS=0;PAIRED=0.0294118;PAIREDR=0.8;PAO=0;PQA=0;PQR=0;PRO=0;QA=1269;QR=2287;RO=60;RPL=0;RPP=76.8404;RPPR=133.299;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:24,21:24:908:21:796:-54.7503,0,-68.4275 0/1:25:15,10:15:571:10:357:-24.8618,0,-44.0275 0/1:24:21,3:21:808:3:116:-3.2884,0,-65.82 dDocent_Contig_684 23 . T C 3061.64 . AB=0.697183;ABP=50.9662;AC=3;AF=0.5;AN=6;AO=99;CIGAR=1X;DP=142;DPB=142;DPRA=0;EPP=217.986;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3927;QR=1320;RO=42;RPL=0;RPP=217.986;RPPR=94.2121;RPR=99;RUN=1;SAF=99;SAP=217.986;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:17,41:17:523:41:1604:-127.135,0,-29.9011 0/1:29:9,20:9:243:20:801:-63.6759,0,-13.4046 0/1:55:16,38:16:554:38:1522:-120.876,0,-33.8349 dDocent_Contig_685 67 . G A 136.775 . 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AB=0.136515;ABP=1036.99;AC=6;AF=1;AN=6;AO=123;CIGAR=1X1M1X4M;DP=901;DPB=901;DPRA=0;EPP=270.101;EPPR=76.8404;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4859;QR=1281;RO=34;RPL=0;RPP=270.101;RPPR=76.8404;RPR=123;RUN=1;SAF=123;SAP=270.101;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:341:8,283,49:8:295:283,49:11005,1937:-1035.44,-135.298,-74.229,-878.449,0,-887.824 1|1:201:5,171,25:5:187:171,25:6678,987:-613.311,-65.9207,-29.7547,-533.602,0,-541.389 1|1:359:21,280,49:21:799:280,49:11014,1935:-993.104,-93.6945,-74.9352,-840.209,0,-890.99 dDocent_Contig_687 165 . G T 95.3048 . AB=0.333333;ABP=5.9056;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=48;DPB=48;DPRA=0.666667;EPP=11.6962;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=1771;RO=44;RPL=4;RPP=11.6962;RPPR=98.5551;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=98.5551;SRR=44;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:439:0:0:0,-3.31133,-39.8659 0/1:12:8,4:8:320:4:162:-11.3544,0,-25.5537 0/0:25:25,0:25:1012:0:0:0,-7.52575,-91.3712 dDocent_Contig_688 10 . T C 5764.17 . AB=0.739394;ABP=167.279;AC=3;AF=0.5;AN=6;AO=244;CIGAR=2X2M;DP=330;DPB=330;DPRA=0;EPP=515.62;EPPR=83.3548;GTI=0;LEN=1;MEANALT=5;MQM=42.4549;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0.717213;PAIREDR=0.972973;PAO=0;PQA=0;PQR=0;PRO=0;QA=7704;QR=1468;RO=37;RPL=0;RPP=532.85;RPPR=83.3548;RPR=244;RUN=1;SAF=242;SAP=515.62;SAR=2;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:131:14,8,3,90,10:14:553:8,3,90,10:294,120,3092,376:-238.216,-224.806,-267.908,-233.345,-261.232,-277.953,0,-27.913,-36.437,-18.4292,-211.95,-239.837,-248.376,-15.0408,-254.451 0|1:84:7,7,5,65,0:7:279:7,5,65,0:282,203,1955,0:-146.479,-134.041,-154.918,-131.87,-140.31,-153.35,0,-8.50505,-6.27486,-3.43621,-148.586,-157.026,-154.855,-23.0032,-171.571 0|1:115:16,2,0,89,4:16:636:2,0,89,4:81,0,2657,60:-197.239,-197.492,-249.268,-202.056,-249.87,-254.434,0,-47.884,-52.4433,-25.6516,-198.874,-246.688,-251.252,-49.2956,-250.048 dDocent_Contig_690 167 . T C 5131.61 . AB=0.815;ABP=175.382;AC=3;AF=0.5;AN=6;AO=163;CIGAR=1X;DP=200;DPB=200;DPRA=0;EPP=356.96;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6426;QR=1444;RO=37;RPL=163;RPP=356.96;RPPR=83.3548;RPR=0;RUN=1;SAF=0;SAP=356.96;SAR=163;SRF=0;SRP=83.3548;SRR=37;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:73:15,58:15:601:58:2262:-181.777,0,-32.4531 0/1:43:5,38:5:199:38:1489:-121.317,0,-5.34465 0/1:84:17,67:17:644:67:2675:-215.59,0,-32.9913 dDocent_Contig_691 8 . C A 1349.79 . AB=0.494949;ABP=3.03223;AC=3;AF=0.5;AN=6;AO=49;CIGAR=1X;DP=99;DPB=99;DPRA=0;EPP=109.412;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1881;QR=1922;RO=50;RPL=0;RPP=109.412;RPPR=111.584;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:7,14:7:269:14:539:-42.5338,0,-18.2526 0/1:34:20,14:20:767:14:538:-38.5304,0,-59.1239 0/1:44:23,21:23:886:21:804:-59.4381,0,-66.8145 dDocent_Contig_692 96 . G A 1484.35 . AB=0.0870942;ABP=1873.35;AC=0;AF=0;AN=6;AO=110;CIGAR=1X3M;DP=1263;DPB=1288.25;DPRA=0;EPP=241.872;EPPR=1738.84;GTI=0;LEN=1;MEANALT=13.3333;MQM=60;MQMR=59.9798;NS=3;NUMALT=2;ODDS=0;PAIRED=0.909091;PAIREDR=0.750281;PAO=5;PQA=166;PQR=1420;PRO=46.5;QA=4249;QR=34569;RO=889;RPL=110;RPP=241.872;RPPR=1933.45;RPR=0;RUN=1;SAF=0;SAP=241.872;SAR=110;SRF=23;SRP=1738.84;SRR=866;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:489:354,49,55:354:13718:49,55:1867,2147:-68.8167,-22.2703,-1134.39,0,-973.75,-1110.31 0|0:467:318,40,49:318:12361:40,49:1544,1899:-58.9168,-27.8653,-1031.49,0,-888.885,-1000.92 0|0:307:217,21,28:217:8490:21,28:838,1112:-26.2246,-22.5303,-714.194,0,-628.97,-689.557 dDocent_Contig_693 7 . T C 19151.3 . 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G A 11060.6 . 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T C 60.3627 . AB=0.173913;ABP=24.253;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=50;DPB=50;DPRA=1.28571;EPP=13.8677;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=54;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.422222;PAO=0;PQA=0;PQR=0;PRO=0;QA=194;QR=1794;RO=45;RPL=0;RPP=13.8677;RPPR=100.727;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:12,1:12:477:1:34:0,-0.514479,-37.1482 0/0:14:14,0:14:554:0:0:0,-4.21442,-49.8082 0/1:23:19,4:19:763:4:160:-7.85974,0,-60.4618 dDocent_Contig_700 60 . C T 19959 . AB=0.560685;ABP=45.9692;AC=3;AF=0.5;AN=6;AO=753;CIGAR=1X;DP=1343;DPB=1343;DPRA=0;EPP=1348.25;EPPR=1113.65;GTI=0;LEN=1;MEANALT=2;MQM=59.9708;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.756972;PAIREDR=0.769231;PAO=0;PQA=0;PQR=0;PRO=0;QA=26720;QR=20841;RO=585;RPL=752;RPP=1629.45;RPPR=1187.95;RPR=1;RUN=1;SAF=717;SAP=1340.39;SAR=36;SRF=556;SRP=1033.92;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:543:225,317:225:8023:317:11197:-844.306,0,-558.841 0/1:462:193,265:193:6925:265:9510:-717.607,0,-485.107 0/1:338:167,171:167:5893:171:6013:-439.511,0,-428.73 dDocent_Contig_701 11 . C A 9253.59 . AB=0.63843;ABP=83.5701;AC=3;AF=0.5;AN=6;AO=309;CIGAR=1X;DP=484;DPB=484;DPRA=0;EPP=656.736;EPPR=383.018;GTI=0;LEN=1;MEANALT=1;MQM=56.2848;MQMR=56.8229;NS=3;NUMALT=1;ODDS=0;PAIRED=0.834951;PAIREDR=0.588571;PAO=0;PQA=0;PQR=0;PRO=0;QA=12356;QR=6952;RO=175;RPL=0;RPP=673.995;RPPR=383.018;RPR=309;RUN=1;SAF=307;SAP=656.736;SAR=2;SRF=175;SRP=383.018;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:215:78,137:78:3107:137:5431:-402.793,0,-208.196 0/1:131:56,75:56:2214:75:3017:-223.305,0,-154.048 0/1:138:41,97:41:1631:97:3908:-304.784,0,-105.472 dDocent_Contig_702 128 . A G 111.162 . AB=0.209302;ABP=34.5724;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=43;DPB=43;DPRA=0;EPP=22.5536;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=310;QR=1172;RO=34;RPL=0;RPP=22.5536;RPPR=76.8404;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=76.8404;SRR=34;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:19,3:19:655:3:103:-2.98736,0,-52.649 0/1:14:9,5:9:308:5:172:-11.6039,0,-23.8381 0/1:7:6,1:6:209:1:35:-1.39142,0,-17.0438 dDocent_Contig_703 107 . N A 129.452 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:140:-12.9449,-1.20412,0 dDocent_Contig_704 72 . C A 167.176 . AB=0.0983607;ABP=88.4809;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X1M1X1M;DP=166;DPB=166;DPRA=0;EPP=16.0391;EPPR=300.502;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.992701;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=5089;RO=137;RPL=6;RPP=16.0391;RPPR=300.502;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=137;SRP=300.502;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:67:60,0,0,7:60:2210:0,0,7:0,0,250:-2.67427,-20.7361,-201.451,-20.7361,-201.451,-201.451,0,-181.073,-181.073,-178.966 0|0:38:25,0,4,9:25:926:0,4,9:0,153,309:-17.5315,-25.0573,-100.827,-12.4907,-88.2707,-87.0666,0,-75.7498,-63.1935,-73.0405 0|1:61:52,6,0,3:52:1953:6,0,3:201,0,122:-0.575958,0,-158.153,-16.2295,-159.959,-176.232,-6.14251,-149.894,-166.167,-165.264 dDocent_Contig_705 10 . A G 4812.35 . AB=0.219604;ABP=727.568;AC=3;AF=0.5;AN=6;AO=233;CIGAR=1X;DP=1061;DPB=1061;DPRA=0;EPP=508.963;EPPR=1746.97;GTI=0;LEN=1;MEANALT=2;MQM=54.6094;MQMR=59.6671;NS=3;NUMALT=1;ODDS=0;PAIRED=0.291845;PAIREDR=0.405832;PAO=0;PQA=0;PQR=0;PRO=0;QA=9098;QR=32782;RO=823;RPL=0;RPP=508.963;RPPR=1790.13;RPR=233;RUN=1;SAF=233;SAP=508.963;SAR=0;SRF=818;SRP=1746.97;SRR=5;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:402:311,91:311:12315:91:3532:-192.601,0,-984.867 0/1:321:252,65:252:10072:65:2547:-129.082,0,-808.897 0/1:338:260,77:260:10395:77:3019:-165.075,0,-832.459 dDocent_Contig_706 10 . G A 5988.09 . AB=0.79375;ABP=122.93;AC=4;AF=0.666667;AN=6;AO=184;CIGAR=1X;DP=219;DPB=219;DPRA=0;EPP=402.561;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.98913;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7308;QR=1409;RO=35;RPL=0;RPP=402.561;RPPR=79.0118;RPR=184;RUN=1;SAF=184;SAP=402.561;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:84:16,68:16:638:68:2673:-215.42,0,-32.4688 1/1:59:2,57:2:81:57:2274:-197.145,-10.075,0 0/1:76:17,59:17:690:59:2361:-189.767,0,-39.5493 dDocent_Contig_707 20 . G A 3781.12 . 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AB=0.276657;ABP=153.355;AC=6;AF=1;AN=6;AO=96;CIGAR=1M1X;DP=347;DPB=347;DPRA=0;EPP=211.472;EPPR=63.8115;GTI=0;LEN=1;MEANALT=4;MQM=52.8958;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0.8125;PAIREDR=0.964286;PAO=0;PQA=0;PQR=0;PRO=0;QA=3696;QR=1055;RO=28;RPL=0;RPP=211.472;RPPR=63.8115;RPR=96;RUN=1;SAF=96;SAP=211.472;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:127:11,38,38,35,5:11:421:38,38,35,5:1433,1426,1335,185:-196.392,-82.2627,-105.374,-82.8919,0,-106.003,-96.2402,-13.3513,-13.981,-120.254,-184.569,-101.679,-102.308,-115.656,-217.614 1|1:93:5,33,24,19,12:5:186:33,24,19,12:1247,914,733,466:-160.473,-59.7586,-65.0482,-87.0019,0,-95.0007,-110.745,-23.7541,-50.9946,-120.248,-123.684,-36.6851,-63.9292,-87.6744,-135.295 1|1:127:12,36,35,42,2:12:448:36,35,42,2:1371,1346,1628,74:-192.676,-83.8248,-109.668,-85.7787,-9.99123,-111.923,-75.7805,0,-1.95274,-99.8156,-190.234,-114.452,-116.406,-106.405,-226.312 dDocent_Contig_710 13 . C T 172.463 . 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T C 129.567 . AB=0.139241;ABP=92.3155;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=100;DPB=100;DPRA=0;EPP=29.068;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=464;QR=3411;RO=88;RPL=12;RPP=29.068;RPPR=194.1;RPR=0;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=194.1;SRR=88;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:20,1:20:779:1:25:0,-3.82177,-67.928 0/1:30:25,5:25:986:5:195:-8.89117,0,-80.0095 0/1:49:43,6:43:1646:6:244:-7.58836,0,-133.618 dDocent_Contig_736 24 . C T 42.8826 . AB=0.106383;ABP=129.51;AC=1;AF=0.166667;AN=6;AO=17;CIGAR=1X;DP=393;DPB=393;DPRA=0;EPP=18.4661;EPPR=815.141;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=59.9813;NS=3;NUMALT=1;ODDS=0;PAIRED=0.352941;PAIREDR=0.919786;PAO=0;PQA=0;PQR=0;PRO=0;QA=618;QR=14689;RO=374;RPL=0;RPP=39.9253;RPPR=815.141;RPR=17;RUN=1;SAF=14;SAP=18.4661;SAR=3;SRF=374;SRP=815.141;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:192:188,3:188:7380:3:111:0,-47.5136,-653.54 0/1:94:83,10:83:3250:10:379:-6.11214,0,-264.225 0/0:107:103,4:103:4059:4:128:0,-20.3824,-353.47 dDocent_Contig_737 98 . N A 169.53 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=176;QR=0;RO=0;RPL=8;RPP=20.3821;RPPR=0;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:65:-6.06502,-0.90309,0 1/1:3:0,3:0:0:3:79:-7.37011,-0.90309,0 1/1:2:0,2:0:0:2:32:-3.03987,-0.60206,0 dDocent_Contig_738 164 . T G 48.2441 . AB=0.1875;ABP=16.582;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=45;DPB=45;DPRA=1.10345;EPP=9.52472;EPPR=85.7331;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=1655;RO=42;RPL=3;RPP=9.52472;RPPR=85.7331;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=94.2121;SRR=42;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:758:0:0:0,-5.71957,-68.5436 0/0:10:10,0:10:393:0:0:0,-3.0103,-35.7238 0/1:16:13,3:13:504:3:123:-6.64831,0,-40.8855 dDocent_Contig_739 30 . C T 14229.2 . AB=0.0538776;ABP=4238.35;AC=0;AF=0;AN=6;AO=132;CIGAR=1X1M1X;DP=2450;DPB=2450;DPRA=0;EPP=289.645;EPPR=1727.04;GTI=0;LEN=1;MEANALT=10.6667;MQM=31.3864;MQMR=33.6031;NS=3;NUMALT=2;ODDS=0;PAIRED=0.886364;PAIREDR=0.537082;PAO=0;PQA=0;PQR=0;PRO=0;QA=5162;QR=47770;RO=1227;RPL=0;RPP=289.645;RPPR=2624.15;RPR=132;RUN=1;SAF=132;SAP=289.645;SAR=0;SRF=1108;SRP=1734.03;SRR=119;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:917:443,55,334:443:17203:55,334:2156,13094:-565.104,-582.048,-1515.02,0,-833.105,-848.973 0|0:666:359,26,224:359:13987:26,224:1025,8804:-315.036,-357.468,-1109.94,0,-694.624,-692.829 0|0:867:425,51,319:425:16580:51,319:1981,12645:-548.307,-563.905,-1517.28,0,-856.389,-872.699 dDocent_Contig_740 1 . N G 75.5706 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=21.5;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:159:-7.55679,-1.20412,0 ./.:.:.:.:.:.:.:. dDocent_Contig_741 8 . T C 13081.1 . AB=0.748428;ABP=343.945;AC=3;AF=0.5;AN=6;AO=476;CIGAR=3M1X;DP=636;DPB=645.25;DPRA=0;EPP=1036.63;EPPR=240.347;GTI=0;LEN=1;MEANALT=3.66667;MQM=48.1492;MQMR=59;NS=3;NUMALT=2;ODDS=0;PAIRED=0.985294;PAIREDR=0.917355;PAO=0;PQA=0;PQR=0;PRO=0;QA=18175;QR=4604;RO=121;RPL=0;RPP=1036.63;RPPR=265.758;RPR=476;RUN=1;SAF=476;SAP=1036.63;SAR=0;SRF=118;SRP=240.347;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:276:33,23,215:33:1255:23,215:871,8189:-589.879,-535.698,-630.591,0,-37.7243,-37.1054 0|1:152:31,2,115:31:1175:2,115:74,4367:-323.783,-327.061,-421.356,0,-88.8721,-60.3077 0|1:208:57,3,146:57:2174:3,146:114,5619:-399.967,-407.776,-585.23,0,-169.001,-134.4 dDocent_Contig_742 18 . T G 180.543 . AB=0.208333;ABP=38.4777;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=91;DPB=91;DPRA=0;EPP=26.8965;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=432;QR=3147;RO=80;RPL=0;RPP=26.8965;RPPR=176.728;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:22,5:22:875:5:192:-9.51907,0,-70.9328 0/1:21:16,5:16:617:5:200:-12.0581,0,-49.5405 0/0:43:42,1:42:1655:1:40:0,-8.94861,-145.173 dDocent_Contig_743 13 . A T 118.932 . AB=0.156863;ABP=107.326;AC=1;AF=0.166667;AN=6;AO=22;CIGAR=1X;DP=266;DPB=266;DPRA=0;EPP=50.7827;EPPR=27.0745;GTI=0;LEN=1;MEANALT=1;MQM=38.2273;MQMR=45.2008;NS=3;NUMALT=1;ODDS=0;PAIRED=0.772727;PAIREDR=0.528689;PAO=0;PQA=0;PQR=0;PRO=0;QA=795;QR=9080;RO=244;RPL=0;RPP=50.7827;RPPR=532.85;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=148;SRP=27.0745;SRR=96;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:81:80,1:80:2971:1:37:0,-20.7248,-228.936 0/0:83:78,5:78:2887:5:181:0,-8.6394,-210.904 0/1:102:86,16:86:3222:16:577:-13.7171,0,-214.226 dDocent_Contig_744 107 . N T 92.093 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=88;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:17:-1.69998,-0.30103,0 1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0 1/1:2:0,2:0:0:2:39:-3.70435,-0.60206,0 dDocent_Contig_745 98 . N A 1090.29 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=38;CIGAR=2X;DP=39;DPB=80.5;DPRA=0;EPP=85.5263;EPPR=0;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=83;PQA=2294;PQR=0;PRO=0;QA=1206;QR=0;RO=0;RPL=38;RPP=85.5263;RPPR=0;RPR=0;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:12:0,12:0:0:12:368:-33.117,-3.61236,0 1|1:3:0,3:0:0:3:103:-9.28079,-0.90309,0 1|1:24:0,23:0:0:23:735:-66.1543,-6.92369,0 dDocent_Contig_750 53 . C A 254.682 . AB=0.244898;ABP=30.7077;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=117;DPB=117;DPRA=1.84;EPP=31.2394;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=500;QR=4098;RO=104;RPL=13;RPP=31.2394;RPPR=228.843;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:37,12:37:1464:12:460:-26.9911,0,-117.263 0/0:43:42,1:42:1649:1:40:0,-8.94861,-144.647 0/0:25:25,0:25:985:0:0:0,-7.52575,-88.9428 dDocent_Contig_751 40 . G T 49.4089 . AB=0.1875;ABP=16.582;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=35;DPB=35;DPRA=1.68421;EPP=9.52472;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1247;RO=32;RPL=0;RPP=9.52472;RPPR=72.4974;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:13,3:13:495:3:121:-6.46372,0,-40.0671 0/0:14:14,0:14:547:0:0:0,-4.21442,-49.564 0/0:5:5,0:5:205:0:0:0,-1.50515,-18.835 dDocent_Contig_752 1 . N G 288.959 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=10.1503;PAIRED=0.625;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=317;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:8:0,8:0:0:8:317:-28.8959,-2.40824,0 ./.:.:.:.:.:.:.:. dDocent_Contig_753 46 . A G 80.645 . AB=0.12963;ABP=67.3502;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=109;DPB=109;DPRA=1.96364;EPP=18.2106;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=283;QR=4002;RO=102;RPL=0;RPP=18.2106;RPPR=224.5;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:47,7:47:1815:7:283:-9.58738,0,-147.318 0/0:24:24,0:24:946:0:0:0,-7.22472,-85.4427 0/0:31:31,0:31:1241:0:0:0,-9.33193,-111.962 dDocent_Contig_754 12 . G A 2999.97 . AB=0.60119;ABP=17.9521;AC=3;AF=0.5;AN=6;AO=101;CIGAR=1X;DP=168;DPB=168;DPRA=0;EPP=222.329;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.980198;PAIREDR=0.0597015;PAO=0;PQA=0;PQR=0;PRO=0;QA=3947;QR=2549;RO=67;RPL=0;RPP=222.329;RPPR=148.499;RPR=101;RUN=1;SAF=101;SAP=222.329;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:68:32,36:32:1227:36:1399:-105.715,0,-90.2455 0/1:50:30,20:30:1128:20:784:-55.8336,0,-86.7538 0/1:50:5,45:5:194:45:1764:-143.948,0,-2.7805 dDocent_Contig_756 26 . A G 68.1515 . AB=0.133333;ABP=20.5268;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=4M1X1M;DP=41;DPB=41.5;DPRA=1.25;EPP=7.35324;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1425;RO=36;RPL=0;RPP=7.35324;RPPR=81.1833;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:14:11,3,0:11:439:3,0:122,0:-7.15807,0,-35.6521,-10.4694,-36.5552,-46.62 0|1:15:13,0,2:13:505:0,2:0,81:-3.17028,-7.08367,-48.5618,0,-41.8804,-41.2783 0|0:12:12,0,0:12:481:0,0:0,0:0,-3.61236,-43.6419,-3.61236,-43.6419,-43.6419 dDocent_Contig_757 51 . A C 6499.57 . AB=0.701987;ABP=56.5206;AC=4;AF=0.666667;AN=6;AO=197;CIGAR=1X;DP=244;DPB=244;DPRA=0;EPP=430.79;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7847;QR=1896;RO=47;RPL=197;RPP=430.79;RPPR=105.07;RPR=0;RUN=1;SAF=197;SAP=430.79;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:93:2,91:2:81:91:3616:-317.791,-20.3101,0 0/1:76:14,62:14:571:62:2488:-201.184,0,-28.8536 0/1:75:31,44:31:1244:44:1743:-134.505,0,-89.6544 dDocent_Contig_758 73 . T A 1434.68 . AB=0.304545;ABP=76.0113;AC=3;AF=0.5;AN=6;AO=67;CIGAR=1X1M;DP=220;DPB=220;DPRA=0;EPP=148.499;EPPR=276.616;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2298;QR=4340;RO=126;RPL=67;RPP=148.499;RPPR=276.616;RPR=0;RUN=1;SAF=67;SAP=148.499;SAR=0;SRF=126;SRP=276.616;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:102:57,21,24:57:1920:21,24:711,818:-49.2101,-8.72385,-157.977,0,-97.9303,-148.352 0|1:86:48,6,32:48:1678:6,32:206,1096:-74.5188,-72.2407,-206.948,0,-119.788,-126.882 0|1:32:21,0,11:21:742:0,11:0,384:-25.2623,-31.584,-92.0162,0,-60.7826,-57.4713 dDocent_Contig_759 179 . G T 81.5155 . AB=0.125;ABP=90.9549;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=126;DPB=126;DPRA=0;EPP=24.725;EPPR=254.901;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=403;QR=4495;RO=116;RPL=10;RPP=24.725;RPPR=254.901;RPR=0;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=254.901;SRR=116;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:54:53,1:53:1999:1:41:0,-12.1611,-176.02 0/1:52:46,6:46:1808:6:240:-6.32247,0,-147.288 0/1:20:17,3:17:688:3:122:-5.35189,0,-56.2289 dDocent_Contig_760 158 . G A 70.0609 . AB=0.136364;ABP=53.5464;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=130;DPB=130;DPRA=1.02326;EPP=16.0391;EPPR=270.101;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=4472;RO=123;RPL=6;RPP=16.0391;RPPR=270.101;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=270.101;SRR=123;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:52:52,0:52:1896:0:0:0,-15.6536,-170.874 0/0:34:34,0:34:1174:0:0:0,-10.235,-105.948 0/1:44:37,6:37:1402:6:242:-8.83,0,-113.133 dDocent_Contig_761 107 . N T 391.091 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=13;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=31.2394;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=13.6161;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=431;QR=0;RO=0;RPL=0;RPP=31.2394;RPPR=0;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:13:0,13:0:0:13:431:-39.1091,-3.91339,0 dDocent_Contig_763 8 . C A 1422.48 . AB=0.0603448;ABP=587.286;AC=0;AF=0;AN=6;AO=21;CIGAR=1X2M1X7M1X1M1X;DP=348;DPB=348.214;DPRA=0;EPP=40.3389;EPPR=105.07;GTI=0;LEN=1;MEANALT=21.3333;MQM=53;MQMR=60;NS=3;NUMALT=8;ODDS=0;PAIRED=0;PAIREDR=1;PAO=1;PQA=35.75;PQR=0;PRO=0;QA=793;QR=1830;RO=47;RPL=0;RPP=48.6112;RPPR=105.07;RPR=21;RUN=1;SAF=20;SAP=40.3389;SAR=1;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:135:14,10,14,10,8,4,6,14,10:14:549:10,14,10,8,4,6,14,10:396,544,380,290,160,238,548,384:-40.8439,-12.4653,-54.6034,-1.62135,-14.1767,-42.5551,-13.8979,-26.4532,-15.6092,-56.0358,-21.9341,-34.4894,-23.6454,-35.9219,-64.6739,-31.8843,-44.4397,-33.5955,-45.872,-53.9082,-75.8284,-25.6366,-38.192,-27.3479,-39.6244,-47.6606,-57.6109,-68.9787,0,-12.5554,-1.71141,-13.9879,-22.0242,-31.9743,-25.7267,-40.934,-13.5455,-26.1008,-15.2568,-27.5333,-35.5695,-45.5197,-39.272,-13.6355,-55.6834 0|0:117:10,4,13,25,9,2,5,11,5:10:387:4,13,25,9,2,5,11,5:157,433,971,343,81,200,408,201:-78.1082,-68.205,-98.7913,-48.7073,-67.5838,-76.5836,-1.44797,-20.3255,-0.829063,-25.7135,-53.0608,-71.9378,-52.4401,-5.18104,-82.142,-74.4386,-93.3156,-73.8173,-26.5593,-78.1714,-105.627,-64.6419,-83.519,-64.0208,-16.7623,-68.3748,-89.7526,-94.9273,-47.8796,-66.7566,-47.2592,0,-51.6125,-72.9902,-63.1936,-76.3587,-64.5528,-83.4299,-63.9317,-16.6732,-68.2857,-89.6635,-79.8669,-63.1045,-94.8382 0|0:96:23,0,3,11,4,9,5,5,3:23:894:0,3,11,4,9,5,5,3:0,114,434,160,354,195,194,120:-28.7866,-35.7103,-109.169,-26.7706,-100.229,-99.326,0,-73.4587,-64.5187,-70.1473,-22.5906,-96.0494,-87.1094,-60.339,-94.8453,-6.60235,-80.061,-71.121,-44.3505,-66.9413,-77.3517,-19.6827,-93.1414,-84.2014,-57.431,-80.0217,-64.0333,-91.6362,-19.773,-93.2316,-84.2916,-57.5212,-80.1119,-64.1235,-77.2039,-91.7265,-25.8254,-99.2842,-90.3442,-63.5737,-86.1645,-70.1761,-83.2565,-83.3467,-98.3811 dDocent_Contig_764 7 . T C 7651.06 . AB=0.5902;ABP=34.7409;AC=3;AF=0.5;AN=6;AO=265;CIGAR=1X;DP=449;DPB=449;DPRA=0;EPP=578.45;EPPR=400.39;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=2.77556e-17;PAIRED=0.996226;PAIREDR=0.989071;PAO=0;PQA=0;PQR=0;PRO=0;QA=10058;QR=6955;RO=183;RPL=0;RPP=578.45;RPPR=400.39;RPR=265;RUN=1;SAF=265;SAP=578.45;SAR=0;SRF=183;SRP=400.39;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:167:59,108:59:2246:108:4072:-316.314,0,-152.091 0/1:109:47,62:47:1751:62:2363:-180.073,0,-125.039 0/1:173:77,95:77:2958:95:3623:-274.242,0,-214.438 dDocent_Contig_765 49 . C A 118.301 . AB=0.3125;ABP=7.89611;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=56;DPB=56;DPRA=0.8;EPP=13.8677;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=2022;RO=51;RPL=0;RPP=13.8677;RPPR=113.755;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:875:0:0:0,-6.62266,-79.0597 0/1:16:11,5:11:430:5:201:-13.654,0,-34.235 0/0:18:18,0:18:717:0:0:0,-5.41854,-64.8552 dDocent_Contig_766 38 . G A 136.797 . AB=0.144737;ABP=86.3263;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=118;DPB=118;DPRA=0.904762;EPP=26.8965;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=437;QR=4164;RO=107;RPL=0;RPP=26.8965;RPPR=235.358;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:42,0:42:1641:0:0:0,-12.6433,-147.919 0/1:42:36,6:36:1384:6:242:-9.51406,0,-112.185 0/1:34:29,5:29:1139:5:195:-7.68854,0,-92.5613 dDocent_Contig_767 41 . C A 30.3235 . AB=0.107527;ABP=127.438;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1X;DP=205;DPB=205;DPRA=1.55;EPP=35.5824;EPPR=415.59;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=556;QR=7445;RO=190;RPL=0;RPP=35.5824;RPPR=415.59;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=190;SRP=415.59;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:93:83,10:83:3251:10:358:-4.55433,0,-264.691 0/0:50:50,0:50:1950:0:0:0,-15.0515,-175.721 0/0:62:57,5:57:2244:5:198:0,-0.466481,-183.944 dDocent_Contig_768 27 . T A 521.657 . AB=0.350877;ABP=14.02;AC=1;AF=0.166667;AN=6;AO=20;CIGAR=1X;DP=181;DPB=181;DPRA=0.919355;EPP=46.4397;EPPR=284.433;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.9125;PAO=0;PQA=0;PQR=0;PRO=0;QA=787;QR=6010;RO=160;RPL=0;RPP=46.4397;RPPR=350.446;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=152;SRP=284.433;SRR=8;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:62:62,0:62:2284:0:0:0,-18.6639,-205.771 0/1:57:37,20:37:1396:20:787:-53.9896,0,-108.762 0/0:62:61,0:61:2330:0:0:0,-18.3628,-209.823 dDocent_Contig_769 11 . G A 550.095 . AB=0.26087;ABP=48.7056;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=92;DPB=92;DPRA=0;EPP=55.1256;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=968;QR=2660;RO=68;RPL=0;RPP=55.1256;RPPR=150.67;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:29,4:29:1129:4:163:-5.12444,0,-91.9625 0/1:25:21,4:21:828:4:161:-7.34952,0,-67.3107 0/1:34:18,16:18:703:16:644:-48.0583,0,-53.3535 dDocent_Contig_770 47 . C T 49.3543 . AB=0.131579;ABP=47.8112;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=82;DPB=82;DPRA=1.65789;EPP=18.2106;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.857143;PAIREDR=0.933333;PAO=0;PQA=0;PQR=0;PRO=0;QA=276;QR=2988;RO=75;RPL=0;RPP=18.2106;RPPR=165.871;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:23,2:23:913:2:78:0,-0.122449,-75.0742 0/1:38:33,5:33:1332:5:198:-6.75824,0,-108.699 0/0:19:19,0:19:743:0:0:0,-5.71957,-67.1882 dDocent_Contig_771 9 . C T 42.7002 . AB=0.1875;ABP=16.582;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=51;DPB=51;DPRA=0.914286;EPP=9.52472;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.978723;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=1796;RO=47;RPL=0;RPP=9.52472;RPPR=105.07;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:22,0:22:836:0:0:0,-6.62266,-75.4411 0/1:16:13,3:13:501:3:117:-6.0939,0,-40.6219 0/0:12:12,0:12:459:0:0:0,-3.61236,-41.6595 dDocent_Contig_772 36 . T G 1749.66 . AB=0.558824;ABP=5.05404;AC=4;AF=0.666667;AN=6;AO=56;CIGAR=1X;DP=86;DPB=86;DPRA=0;EPP=124.613;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2200;QR=1195;RO=30;RPL=0;RPP=124.613;RPPR=68.1545;RPR=56;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:25,22:25:992:22:877:-65.0903,0,-75.428 0/1:21:5,16:5:203:16:604:-48.3632,0,-12.3314 1/1:18:0,18:0:0:18:719:-65.035,-5.41854,0 dDocent_Contig_773 174 . G A 245.667 . AB=0.289474;ABP=17.6392;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=60;DPB=60;DPRA=0;EPP=29.068;EPPR=105.07;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=469;QR=1786;RO=47;RPL=12;RPP=29.068;RPPR=105.07;RPR=0;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=105.07;SRR=47;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:14,7:14:536:7:271:-18.3056,0,-42.1487 0/0:22:21,1:21:802:1:40:0,-2.62698,-68.4975 0/1:16:12,4:12:448:4:158:-9.784,0,-35.8329 dDocent_Contig_774 12 . T C 24580.9 . AB=0.804412;ABP=550.336;AC=4;AF=0.666667;AN=6;AO=764;CIGAR=1X;DP=918;DPB=918;DPRA=0;EPP=1662.02;EPPR=311.359;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.990838;PAIREDR=0.978873;PAO=0;PQA=0;PQR=0;PRO=0;QA=30405;QR=5618;RO=142;RPL=0;RPP=1662.02;RPPR=311.359;RPR=764;RUN=1;SAF=764;SAP=1662.02;SAR=0;SRF=142;SRP=311.359;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:312:71,241:71:2777:241:9561:-766.012,0,-156.132 1/1:238:20,217:20:787:217:8572:-699.883,-0.595831,0 0/1:368:51,306:51:2054:306:12272:-995.715,0,-77.1807 dDocent_Contig_775 107 . N A 1925 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=69;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=152.842;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2124;QR=0;RO=0;RPL=0;RPP=152.842;RPPR=0;RPR=69;RUN=1;SAF=0;SAP=152.842;SAR=69;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:36:0,36:0:0:36:1153:-104.066,-10.8371,0 1/1:16:0,16:0:0:16:458:-41.4969,-4.81648,0 1/1:17:0,17:0:0:17:513:-46.4606,-5.11751,0 dDocent_Contig_777 134 . N G 156.706 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:40:-3.99568,-0.30103,0 1/1:3:0,3:0:0:3:122:-11.3725,-0.90309,0 dDocent_Contig_778 12 . C A 361.617 . AB=0.223684;ABP=53.4113;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=99;DPB=99;DPRA=0;EPP=42.0968;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=727;QR=3229;RO=81;RPL=0;RPP=42.0968;RPPR=178.9;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:22,1:22:850:1:40:0,-2.92801,-72.811 0/1:36:31,5:31:1238:5:203:-7.81598,0,-100.856 0/1:40:28,12:28:1141:12:484:-31.8686,0,-90.9257 dDocent_Contig_779 14 . T C 1315.95 . AB=0.329032;ABP=42.363;AC=3;AF=0.5;AN=6;AO=51;CIGAR=1X;DP=155;DPB=155;DPRA=0;EPP=113.755;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.980392;PAIREDR=0.971154;PAO=0;PQA=0;PQR=0;PRO=0;QA=2031;QR=4150;RO=104;RPL=0;RPP=113.755;RPPR=228.843;RPR=51;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:38,20:38:1512:20:795:-54.4075,0,-118.867 0/1:59:38,21:38:1509:21:829:-57.1585,0,-118.294 0/1:38:28,10:28:1129:10:407:-25.5515,0,-90.4507 dDocent_Contig_781 145 . C G 601.115 . AB=0.388889;ABP=10.7311;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X;DP=72;DPB=72;DPRA=0;EPP=63.8115;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=959;QR=1464;RO=44;RPL=0;RPP=63.8115;RPPR=98.5551;RPR=28;RUN=1;SAF=0;SAP=63.8115;SAR=28;SRF=0;SRP=98.5551;SRR=44;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:9,10:9:276:10:336:-24.846,0,-19.42 0/1:21:15,6:15:509:6:210:-12.9208,0,-39.8121 0/1:32:20,12:20:679:12:413:-27.8676,0,-51.7948 dDocent_Contig_782 18 . T C 80.2652 . AB=0.152174;ABP=51.3492;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=85;DPB=85;DPRA=20.75;EPP=20.3821;EPPR=94.6352;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=40;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=313;QR=2998;RO=77;RPL=0;RPP=20.3821;RPPR=94.6352;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:39,7:39:1502:7:275:-9.54903,0,-112.955 0/0:37:36,1:36:1418:1:38:0,-7.55053,-115.437 0/0:2:2,0:2:78:0:0:0,-0.60206,-6.92763 dDocent_Contig_783 7 . A T 10612.9 . AB=0.111498;ABP=1131.77;AC=3;AF=0.5;AN=6;AO=96;CIGAR=1X4M1X;DP=861;DPB=861;DPRA=0;EPP=133.661;EPPR=51.2702;GTI=0;LEN=1;MEANALT=20.6667;MQM=45.1354;MQMR=59.8776;NS=3;NUMALT=4;ODDS=0;PAIRED=0.666667;PAIREDR=0.673469;PAO=0;PQA=0;PQR=0;PRO=0;QA=3002;QR=1857;RO=49;RPL=0;RPP=211.472;RPPR=109.412;RPR=96;RUN=1;SAF=86;SAP=133.661;SAR=10;SRF=41;SRP=51.2702;SRR=8;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:338:20,37,52,132,16:20:747:37,52,132,16:1370,1532,4953,621:-398.451,-315.242,-365.269,-287.299,-259.236,-332.81,-56.0006,-27.9399,0,-77.4315,-354.977,-326.913,-298.97,-67.6716,-411.325 1|0:406:21,57,32,181,16:21:800:57,32,181,16:2086,1059,6746,623:-506.701,-378.815,-427.281,-429.506,-360.923,-485.498,-68.5754,0,-50.686,-79.7161,-465.742,-397.159,-447.85,-86.9208,-526.55 1|0:117:8,17,12,53,11:8:310:17,12,53,11:654,411,2036,443:-161.661,-115.86,-136.214,-131.385,-108.648,-153.244,-22.7335,0,-15.5251,-32.2519,-128.622,-105.884,-121.409,-12.7564,-150.782 dDocent_Contig_784 98 . N G 75.9564 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:41:-3.89396,-0.60206,0 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_785 96 . A G 14409 . AB=0.101296;ABP=2347.53;AC=0;AF=0;AN=6;AO=172;CIGAR=3M1X2M;DP=1698;DPB=2048;DPRA=0;EPP=27.452;EPPR=297.524;GTI=0;LEN=1;MEANALT=8;MQM=60;MQMR=59.9536;NS=3;NUMALT=3;ODDS=0;PAIRED=0.703488;PAIREDR=0.750774;PAO=698.25;PQA=10779.2;PQR=11165.2;PRO=711.25;QA=6400;QR=23978;RO=646;RPL=113;RPP=39.8243;RPPR=473.191;RPR=59;RUN=1;SAF=5;SAP=334.337;SAR=167;SRF=39;SRP=1087.48;SRR=607;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:583:254,236,30,55:254:9519:236,30,55:6333,1101,2063:-422.115,0,-708.318,-408.599,-689.39,-1179.12,-329.619,-610.416,-1019.19,-1092.61 0|0:601:261,225,45,62:261:9647:225,45,62:6126,1657,2225:-404.801,0,-721.177,-347.896,-653.444,-1123.35,-301.927,-607.478,-955.46,-1072.27 0|0:514:131,295,29,55:131:4812:295,29,55:8313,1076,2112:-619.506,0,-304.285,-570.921,-305.087,-955.445,-485.601,-219.785,-790.836,-862.299 dDocent_Contig_787 186 . G A 83.5877 . AB=0.233333;ABP=21.5402;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=101;DPB=101;DPRA=0;EPP=26.8965;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=367;QR=3398;RO=90;RPL=11;RPP=26.8965;RPPR=198.443;RPR=0;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=198.443;SRR=90;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:23,7:23:833:7:207:-9.88163,0,-66.2364 0/0:26:25,1:25:950:1:38:0,-4.02951,-82.002 0/0:45:42,3:42:1615:3:122:0,-2.17386,-134.212 dDocent_Contig_788 108 . A C 35.982 . AB=0.181818;ABP=22.3561;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=65;DPB=65;DPRA=1.02326;EPP=11.6962;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=127;QR=1664;RO=61;RPL=0;RPP=11.6962;RPPR=135.47;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=135.47;SRR=61;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:18,4:18:501:4:127:-5.12097,0,-38.7381 0/0:18:18,0:18:481:0:0:0,-5.41854,-43.5517 0/0:25:25,0:25:682:0:0:0,-7.52575,-61.6437 dDocent_Contig_789 8 . A C 2168.6 . AB=0.449438;ABP=6.96287;AC=3;AF=0.5;AN=6;AO=80;CIGAR=1X;DP=178;DPB=178;DPRA=0;EPP=176.728;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.979592;PAO=0;PQA=0;PQR=0;PRO=0;QA=3056;QR=3729;RO=98;RPL=0;RPP=176.728;RPPR=215.815;RPR=80;RUN=1;SAF=80;SAP=176.728;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:61:28,33:28:1076:33:1251:-94.5183,0,-78.7835 0/1:35:14,21:14:526:21:799:-61.6992,0,-37.1452 0/1:82:56,26:56:2127:26:1006:-66.1658,0,-166.976 dDocent_Contig_790 129 . G A 136.622 . AB=0.192308;ABP=45.7716;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=193;DPB=193;DPRA=1.03175;EPP=26.8965;EPPR=398.218;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=374;QR=6174;RO=182;RPL=0;RPP=26.8965;RPPR=398.218;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=398.218;SRR=182;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:42,10:42:1417:10:339:-15.185,0,-112.169 0/0:78:77,1:77:2584:1:35:0,-19.9817,-229.315 0/0:63:63,0:63:2173:0:0:0,-18.9649,-195.843 dDocent_Contig_791 11 . G A 50097.4 . AB=0;ABP=0;AC=0;AF=0;AN=6;AO=103;CIGAR=1X2M1X;DP=1584;DPB=1584;DPRA=0;EPP=226.672;EPPR=79.0118;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4073;QR=1364;RO=35;RPL=0;RPP=226.672;RPPR=79.0118;RPR=103;RUN=1;SAF=103;SAP=226.672;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:492:14,22,455:14:553:22,455:858,17902:-1559.78,-1493.47,-1532.35,-91.4588,-66.4431,0 0|0:400:16,25,358:16:613:25,358:992,14092:-1211.84,-1134.99,-1177.77,-57.4662,-26.0927,0 0|0:692:5,56,629:5:198:56,629:2223,25089:-2237.65,-2056.16,-2055.6,-173.051,-6.34979,0 dDocent_Contig_792 98 . N T 556.552 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=18;CIGAR=1X;DP=18;DPB=18;DPRA=0;EPP=42.0968;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=602;QR=0;RO=0;RPL=18;RPP=42.0968;RPPR=0;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:140:-12.9449,-1.20412,0 1/1:9:0,9:0:0:9:289:-26.3228,-2.70927,0 1/1:5:0,5:0:0:5:173:-15.9102,-1.50515,0 dDocent_Contig_793 32 . G C 1313.74 . AB=0.474747;ABP=3.55865;AC=3;AF=0.5;AN=6;AO=47;CIGAR=1X;DP=99;DPB=99;DPRA=0;EPP=105.07;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1841;QR=2073;RO=52;RPL=0;RPP=105.07;RPPR=115.927;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:9,19:9:341:19:741:-58.5867,0,-22.613 0/1:28:16,12:16:641:12:478:-34.9427,0,-49.5969 0/1:43:27,16:27:1091:16:622:-43.3677,0,-85.5315 dDocent_Contig_795 43 . A G 4005.08 . AB=0.698113;ABP=39.1469;AC=4;AF=0.666667;AN=6;AO=123;CIGAR=1X;DP=155;DPB=155;DPRA=0;EPP=270.101;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.99187;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4836;QR=1277;RO=32;RPL=0;RPP=270.101;RPPR=72.4974;RPR=123;RUN=1;SAF=123;SAP=270.101;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:49:0,49:0:0:49:1909:-172.021,-14.7505,0 0/1:46:21,25:21:844:25:991:-75.6406,0,-62.4245 0/1:60:11,49:11:433:49:1936:-156.369,0,-21.2603 dDocent_Contig_796 24 . T C 440.236 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X;DP=84;DPB=84;DPRA=0.854839;EPP=37.7539;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=647;QR=2672;RO=68;RPL=0;RPP=37.7539;RPPR=150.67;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1202:0:0:0,-9.33193,-108.456 0/1:30:15,15:15:596:15:606:-45.8475,0,-44.9492 0/0:23:22,1:22:874:1:41:0,-2.82912,-74.8736 dDocent_Contig_797 9 . T C 746.897 . AB=0.0869565;ABP=139.341;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X3M1X1M1X;DP=113;DPB=113;DPRA=0;EPP=20.3821;EPPR=115.927;GTI=0;LEN=1;MEANALT=4.5;MQM=43;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=312;QR=2014;RO=52;RPL=0;RPP=20.3821;RPPR=115.927;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:21:10,7,0,0,4:10:382:7,0,0,4:273,0,0,164:-19.0281,0,-29.2099,-22.0384,-31.3171,-53.37,-22.0384,-31.3171,-53.37,-53.37,-8.49263,-17.7728,-39.8285,-39.8285,-38.6244 0|1:46:20,14,1,7,4:20:792:14,1,7,4:538,37,283,163:-34.9042,0,-60.9838,-40.5177,-64.7896,-105.411,-17.5788,-41.8615,-82.3765,-80.6801,-27.4702,-51.7483,-92.263,-69.3363,-91.4701 0|1:46:22,11,7,2,2:22:840:11,7,2,2:427,275,75,81:-26.2803,0,-65.6157,-10.5974,-46.629,-77.4188,-27.0274,-63.0522,-73.6509,-95.3461,-26.2197,-62.2458,-72.8448,-89.2674,-94.5404 dDocent_Contig_798 24 . T C 3421.07 . AB=0.869919;ABP=149.205;AC=3;AF=0.5;AN=6;AO=107;CIGAR=1X;DP=123;DPB=123;DPRA=0;EPP=235.358;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4260;QR=627;RO=16;RPL=0;RPP=235.358;RPPR=37.7539;RPR=107;RUN=1;SAF=107;SAP=235.358;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:6,29:6:245:29:1141:-92.4398,0,-11.8934 0/1:56:7,49:7:262:49:1963:-160.009,0,-7.06982 0/1:32:3,29:3:120:29:1156:-94.6862,0,-1.55435 dDocent_Contig_799 58 . C T 324.173 . AB=0.267857;ABP=29.2231;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=56;DPB=56;DPRA=0;EPP=35.5824;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=596;QR=1626;RO=41;RPL=15;RPP=35.5824;RPPR=92.0407;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:10,6:10:397:6:240:-17.1595,0,-31.2723 0/1:27:24,3:24:954:3:116:-2.68973,0,-78.0395 0/1:13:7,6:7:275:6:240:-18.0623,0,-21.2052 dDocent_Contig_800 97 . T G 34.5696 . AB=0.2;ABP=14.7363;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=49;DPB=49;DPRA=0.882353;EPP=9.52472;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.913043;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=1264;RO=46;RPL=3;RPP=9.52472;RPPR=102.898;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:486:0:0:0,-5.71957,-43.9899 0/0:15:15,0:15:440:0:0:0,-4.51545,-39.886 0/1:15:12,3:12:338:3:105:-5.28071,0,-26.1819 dDocent_Contig_801 109 . T G 134.96 . AB=0.227273;ABP=31.4368;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=44;DPB=44;DPRA=0;EPP=24.725;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=343;QR=1164;RO=34;RPL=0;RPP=24.725;RPPR=76.8404;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=76.8404;SRR=34;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:5,1:5:172:1:35:-1.69245,0,-14.0123 0/1:15:12,3:12:407:3:101:-4.90828,0,-32.4407 0/1:23:17,6:17:585:6:207:-12.0444,0,-46.0514 dDocent_Contig_802 24 . T C 3304.63 . AB=0.707865;ABP=36.4119;AC=4;AF=0.666667;AN=6;AO=109;CIGAR=1X;DP=138;DPB=138;DPRA=0;EPP=239.701;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4122;QR=1124;RO=29;RPL=0;RPP=239.701;RPPR=65.983;RPR=109;RUN=1;SAF=109;SAP=239.701;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:49:3,46:3:118:46:1725:-144.493,-3.74758,0 0/1:40:17,23:17:658:23:854:-65.1193,0,-47.5009 0/1:49:9,40:9:348:40:1543:-124.373,0,-16.9248 dDocent_Contig_803 30 . T G 82.3452 . AB=0.235294;ABP=13.3567;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=35;DPB=35;DPRA=1.88889;EPP=11.6962;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=1240;RO=31;RPL=0;RPP=11.6962;RPPR=70.3259;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:13,4:13:520:4:161:-9.75739,0,-42.0284 0/0:10:10,0:10:394:0:0:0,-3.0103,-35.8165 0/0:8:8,0:8:326:0:0:0,-2.40824,-29.7099 dDocent_Contig_804 29 . A G 20130.6 . AB=0.0685393;ABP=1442.1;AC=1;AF=0.166667;AN=6;AO=61;CIGAR=1X2M1X;DP=890;DPB=890;DPRA=0;EPP=135.47;EPPR=109.412;GTI=0;LEN=1;MEANALT=10.3333;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=2.22045e-16;PAIRED=0;PAIREDR=0.959184;PAO=0;PQA=0;PQR=0;PRO=0;QA=2404;QR=1945;RO=49;RPL=0;RPP=135.47;RPPR=109.412;RPR=61;RUN=1;SAF=61;SAP=135.47;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:324:13,7,25,26,225:13:518:7,25,26,225:276,992,1011,8740:-754.596,-735.801,-776.351,-676.847,-696.795,-711.978,-675.432,-695.381,-636.426,-710.262,-40.4192,-60.3688,-1.41291,0,-15.3456 1|0:261:12,19,16,10,179:12:481:19,16,10,179:740,621,375,6985:-591.719,-534.513,-568.423,-544.31,-523.121,-579.123,-564.619,-543.431,-553.228,-601.239,-21.1874,0,-9.79717,-30.1083,-6.93498 0|0:305:24,5,20,10,211:24:946:5,20,10,211:202,791,390,8264:-672.262,-662.833,-739.157,-614.39,-675.566,-686.199,-647.43,-708.606,-660.164,-722.249,0,-61.1764,-12.7336,-45.7743,-14.3133 dDocent_Contig_805 15 . A T 1883.24 . AB=0.62;ABP=15.518;AC=3;AF=0.5;AN=6;AO=62;CIGAR=1X;DP=100;DPB=100;DPRA=0;EPP=137.642;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.815789;PAO=0;PQA=0;PQR=0;PRO=0;QA=2478;QR=1520;RO=38;RPL=0;RPP=137.642;RPPR=85.5263;RPR=62;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:15,29:15:601:29:1176:-92.8696,0,-41.1822 0/1:26:12,14:12:478:14:540:-41.106,0,-35.5428 0/1:30:11,19:11:441:19:762:-59.8709,0,-31.0144 dDocent_Contig_806 22 . G C 605.946 . AB=0.125;ABP=32.3252;AC=0;AF=0;AN=6;AO=3;CIGAR=2M1X1M;DP=81;DPB=117.25;DPRA=0;EPP=9.52472;EPPR=109.412;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=1891;RO=49;RPL=0;RPP=9.52472;RPPR=109.412;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:34:21,11,2,0:21:803:11,2,0:381,79,0:-24.5951,0,-62.5657,-24.4087,-59.3753,-89.7187,-30.9167,-65.877,-90.3207,-96.8228 0|0:24:17,0,4,3:17:666:0,4,3:0,149,123:-7.05782,-12.1753,-66.9428,0,-54.7499,-53.5457,-2.00714,-56.7879,-44.5949,-55.8848 0|0:23:11,0,12,0:11:422:0,12,0:0,456,0:-34.4632,-37.7745,-72.4113,0,-35.0184,-31.406,-37.7745,-72.4113,-35.0184,-72.4113 dDocent_Contig_807 16 . A C 5738.31 . AB=0.21835;ABP=971.777;AC=3;AF=0.5;AN=6;AO=307;CIGAR=1X;DP=1406;DPB=1406;DPRA=0;EPP=669.652;EPPR=2166.26;GTI=0;LEN=1;MEANALT=2.33333;MQM=48.9739;MQMR=58.9428;NS=3;NUMALT=1;ODDS=0;PAIRED=0.0716612;PAIREDR=0.0356139;PAO=0;PQA=0;PQR=0;PRO=0;QA=12228;QR=41987;RO=1067;RPL=0;RPP=669.652;RPPR=2319.97;RPR=307;RUN=1;SAF=307;SAP=669.652;SAR=0;SRF=1049;SRP=2166.26;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:555:427,114:427:16779:114:4561:-200.54,0,-1339.1 0/1:518:386,115:386:15123:115:4560:-224.07,0,-1206.23 0/1:333:254,78:254:10085:78:3107:-154.743,0,-804.61 dDocent_Contig_808 15 . G T 213.322 . AB=0.0930233;ABP=188.595;AC=0;AF=0;AN=6;AO=12;CIGAR=2X3M;DP=193;DPB=193;DPRA=0;EPP=29.068;EPPR=307.016;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=58.5857;NS=3;NUMALT=4;ODDS=2.77556e-17;PAIRED=1;PAIREDR=0.935714;PAO=0;PQA=0;PQR=0;PRO=0;QA=465;QR=5428;RO=140;RPL=0;RPP=29.068;RPPR=307.016;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=140;SRP=307.016;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:64:50,5,0,3,4:50:1935:5,0,3,4:199,0,92,161:-1.25884,0,-153.069,-16.3103,-154.575,-170.866,-9.11183,-147.364,-163.655,-162.752,-3.02383,-141.304,-157.595,-150.385,-156.391 0|0:48:32,7,6,2,1:32:1221:7,6,2,1:275,227,81,39:-12.9157,0,-95.8886,-3.94932,-79.3902,-100.133,-15.8672,-91.3152,-95.2583,-113.262,-19.3427,-94.7896,-98.7326,-110.658,-117.037 0|0:81:58,9,6,7,0:58:2272:9,6,7,0:358,238,269,0:-11.9138,0,-183.659,-9.77958,-166.776,-194.34,-7.8663,-164.856,-174.634,-192.119,-29.3735,-186.368,-196.146,-194.226,-215.738 dDocent_Contig_810 53 . C T 481.401 . AB=0.255319;ABP=51.8915;AC=2;AF=0.333333;AN=6;AO=30;CIGAR=1X;DP=171;DPB=171;DPRA=0;EPP=68.1545;EPPR=307.016;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1093;QR=5535;RO=140;RPL=30;RPP=68.1545;RPPR=307.016;RPR=0;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=140;SRP=307.016;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:36,18:36:1428:18:698:-46.8808,0,-112.515 0/1:40:33,6:33:1299:6:183:-4.782,0,-105.211 0/0:77:71,6:71:2808:6:212:0,-3.76884,-233.423 dDocent_Contig_811 26 . G A 1470.49 . AB=0.382979;ABP=19.7815;AC=3;AF=0.5;AN=6;AO=54;CIGAR=1X;DP=141;DPB=141;DPRA=0;EPP=120.27;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2156;QR=3425;RO=87;RPL=0;RPP=120.27;RPPR=191.928;RPR=54;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:32,22:32:1235:22:873:-62.624,0,-95.1678 0/1:37:26,11:26:1025:11:438:-28.635,0,-81.4042 0/1:50:29,21:29:1165:21:845:-61.3128,0,-90.0791 dDocent_Contig_812 24 . A C 325.782 . AB=0.317073;ABP=14.9269;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X1M1D3M;DP=54;DPB=51.8333;DPRA=1.57692;EPP=31.2394;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=521;QR=1443;RO=37;RPL=0;RPP=31.2394;RPPR=83.3548;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:13:13,0,0:13:509:0,0:0,0:0,-3.91339,-46.1581,-3.91339,-46.1581,-46.1581 0|1:15:10,5,0:10:386:5,0:197,0:-13.5907,0,-30.5807,-16.601,-32.0858,-48.2959 0|1:26:14,8,4:14:548:8,4:324,157:-22.5103,0,-42.6473,-13.8179,-32.1443,-57.6615 dDocent_Contig_813 197 . C A 58.9255 . AB=0.151515;ABP=37.8197;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=128;DPB=128;DPRA=0;EPP=26.8965;EPPR=257.073;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=423;QR=4366;RO=117;RPL=11;RPP=26.8965;RPPR=257.073;RPR=0;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=257.073;SRR=117;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:46:44,2:44:1673:2:77:0,-6.53824,-143.526 0/1:33:28,5:28:998:5:192:-7.71602,0,-80.1717 0/0:49:45,4:45:1695:4:154:0,-0.517011,-138.578 dDocent_Contig_814 98 . N T 242.449 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=259;QR=0;RO=0;RPL=8;RPP=20.3821;RPPR=0;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:196:-17.9597,-1.80618,0 1/1:2:0,2:0:0:2:63:-5.98364,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_815 202 . T C 3211.13 . AB=0.740506;ABP=82.3927;AC=3;AF=0.5;AN=6;AO=117;CIGAR=7M4I2M2X;DP=158;DPB=193.273;DPRA=0;EPP=257.073;EPPR=70.3259;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4126;QR=1204;RO=31;RPL=117;RPP=257.073;RPPR=70.3259;RPR=0;RUN=1;SAF=0;SAP=257.073;SAR=117;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:51:8,41,2:8:313:41,2:1443,65:-115.091,0,-13.4464,-112.255,-20.5565,-137.395 0|1:52:9,39,4:9:359:39,4:1366,155:-108.407,0,-17.8342,-98.3786,-16.8437,-126.75 0|1:55:14,37,4:14:532:37,4:1317,136:-103.138,0,-32.5119,-96.3257,-32.63,-138.747 dDocent_Contig_817 7 . T C 374.509 . AB=0.185484;ABP=109.553;AC=3;AF=0.5;AN=6;AO=23;CIGAR=1X;DP=124;DPB=124;DPRA=0;EPP=52.9542;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.478261;PAIREDR=0.950495;PAO=0;PQA=0;PQR=0;PRO=0;QA=861;QR=3858;RO=101;RPL=0;RPP=52.9542;RPPR=222.329;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:37,4:37:1403:4:136:-0.228205,0,-114.211 0/1:27:21,6:21:806:6:225:-12.482,0,-64.7384 0/1:56:43,13:43:1649:13:500:-28.4894,0,-131.813 dDocent_Contig_818 9 . A G 131.323 . AB=0.181818;ABP=41.702;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=166;DPB=166;DPRA=0;EPP=31.2394;EPPR=335.246;GTI=0;LEN=1;MEANALT=1;MQM=58.6154;MQMR=59.6863;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=498;QR=5818;RO=153;RPL=0;RPP=31.2394;RPPR=335.246;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=153;SRP=335.246;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:36,8:36:1353:8:306:-14.6551,0,-108.724 0/0:36:35,1:35:1322:1:38:0,-7.1826,-115.589 0/0:86:82,4:82:3143:4:154:0,-11.655,-268.764 dDocent_Contig_819 7 . T A 1103.52 . AB=0.266667;ABP=17.1973;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1M2X1M;DP=57;DPB=55.25;DPRA=0.555556;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=4;MQM=37.25;MQMR=0;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=0;PAO=7.75;PQA=0;PQR=0;PRO=7.75;QA=277;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:27:0,26,0,0,0,1:0:0:26,0,0,0,1:990,0,0,0,39:-59.8969,-7.82678,0,-59.8969,-7.82678,-59.8969,-59.8969,-7.82678,-59.8969,-59.8969,-59.8969,-7.82678,-59.8969,-59.8969,-59.8969,-56.9124,-4.48169,-56.9124,-56.9124,-56.9124,-56.6114 0|1:11:0,8,2,1,0,0:0:0:8,2,1,0,0:304,49,39,0,0:-23.6018,-3.46728,-1.05904,-20.1225,0,-19.5204,-21.4992,-1.34891,-18.0224,-21.1982,-23.6018,-3.46728,-20.1225,-21.4992,-23.6018,-23.6018,-3.46728,-20.1225,-21.4992,-23.6018,-23.6018 1|0:19:0,4,6,2,4,3:0:0:4,6,2,4,3:155,228,76,154,66:-29.4139,-19.1067,-17.9026,-11.8414,-1.52436,-10.0352,-25.2212,-14.9156,-7.64815,-24.6192,-17.5898,-7.27758,0,-13.397,-16.3856,-25.1867,-14.8869,-7.62209,-20.9986,-13.3672,-24.2836 dDocent_Contig_820 16 . C T 239.917 . AB=0.191176;ABP=59.3408;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=93;DPB=93;DPRA=0;EPP=33.4109;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=559;QR=3188;RO=79;RPL=0;RPP=33.4109;RPPR=174.557;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:27,10:27:1080:10:402:-25.402,0,-86.352 0/0:25:24,1:24:968:1:36:0,-3.92747,-83.8202 0/1:31:28,3:28:1140:3:121:-1.94827,0,-93.5458 dDocent_Contig_821 107 . N A 97.0363 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:104:-9.70309,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_822 15 . G A 237.21 . AB=0.30303;ABP=14.1309;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=54;DPB=54;DPRA=0.785714;EPP=24.725;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=390;QR=1707;RO=44;RPL=0;RPP=24.725;RPPR=98.5551;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:13,9:13:510:9:350:-25.237,0,-39.6188 0/1:11:10,1:10:398:1:40:-0.684349,0,-32.8676 0/0:21:21,0:21:799:0:0:0,-6.32163,-72.2174 dDocent_Contig_823 66 . T A 170.134 . AB=0.275862;ABP=15.6647;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X1M1X;DP=66;DPB=66;DPRA=1.56757;EPP=20.3821;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=299;QR=2144;RO=58;RPL=8;RPP=20.3821;RPPR=128.956;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:29:21,8:21:767:8:299:-18.5363,0,-60.6191 0|0:13:13,0:13:489:0:0:0,-3.91339,-44.3557 0|0:24:24,0:24:888:0:0:0,-7.22472,-80.2429 dDocent_Contig_824 12 . A C 265.802 . AB=0.144928;ABP=154.132;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X;DP=138;DPB=138;DPRA=0;EPP=46.4397;EPPR=259.244;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=805;QR=4671;RO=118;RPL=0;RPP=46.4397;RPPR=259.244;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=118;SRP=259.244;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:44,12:44:1752:12:481:-26.7828,0,-141.045 0/1:40:36,4:36:1400:4:161:-2.83428,0,-114.211 0/1:42:38,4:38:1519:4:163:-2.41517,0,-124.308 dDocent_Contig_828 16 . A T 695.343 . AB=0.355263;ABP=16.8392;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1X;DP=76;DPB=76;DPRA=0;EPP=61.6401;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=52.6531;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.795918;PAO=0;PQA=0;PQR=0;PRO=0;QA=1076;QR=1924;RO=49;RPL=0;RPP=61.6401;RPPR=109.412;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:23,18:23:905:18:708:-51.699,0,-63.4754 0/1:16:13,3:13:498:3:123:-6.64831,0,-31.9927 0/1:19:13,6:13:521:6:245:-16.7099,0,-41.5135 dDocent_Contig_830 8 . C T 6038.02 . AB=0.0659341;ABP=300.86;AC=0;AF=0;AN=6;AO=13;CIGAR=1X1M2X;DP=253;DPB=253;DPRA=0;EPP=31.2394;EPPR=70.3259;GTI=0;LEN=1;MEANALT=3.33333;MQM=53.0769;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=498;QR=1205;RO=31;RPL=0;RPP=31.2394;RPPR=70.3259;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:71:1,1,69,0,0:1:40:1,69,0,0:39,2670,0,0:-232.895,-229.99,-232.985,-17.471,-17.5701,0,-233.196,-233.286,-20.7711,-236.492,-233.196,-233.286,-20.7711,-236.492,-236.492 0|0:76:13,4,51,6,2:13:506:4,51,6,2:157,1967,132,81:-148.42,-139.917,-180.306,0,-29.2176,-26.2864,-143.327,-172.503,-32.661,-183.111,-146.334,-175.512,-35.6384,-178.919,-187.325 0|0:106:17,8,74,0,6:17:659:8,74,0,6:302,2884,0,241:-226.01,-206.578,-258.312,0,-29.6004,-31.8711,-231.127,-260.72,-54.1473,-285.269,-212.63,-242.224,-35.6514,-266.772,-264.966 dDocent_Contig_838 98 . N G 48297 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=1819;CIGAR=1X;DP=1903;DPB=1903;DPRA=0;EPP=3952.92;EPPR=0;GTI=0;LEN=1;MEANALT=3;MQM=49.8659;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.959868;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=57185;QR=0;RO=0;RPL=1819;RPP=3952.92;RPPR=0;RPR=0;RUN=1;SAF=1819;SAP=3952.92;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:732:0,716:0:0:716:22300:-1857.24,-215.537,0 1/1:555:0,532:0:0:532:16833:-1430.25,-160.148,0 1/1:616:0,571:0:0:571:18052:-1541.73,-171.888,0 dDocent_Contig_841 1 . N G 76.7301 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=56;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:81:-7.67192,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_843 62 . C T 42.9469 . AB=0.131579;ABP=47.8112;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=94;DPB=94;DPRA=1.35714;EPP=13.8677;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=191;QR=3398;RO=89;RPL=5;RPP=13.8677;RPPR=196.271;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:45:45,0:45:1665:0:0:0,-13.5463,-150.095 0/0:11:11,0:11:435:0:0:0,-3.31133,-39.5055 0/1:38:33,5:33:1298:5:191:-6.11858,0,-105.659 dDocent_Contig_844 43 . G A 36.665 . AB=0.137931;ABP=36.0317;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=96;DPB=96;DPRA=0.865672;EPP=11.6962;EPPR=200.614;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=153;QR=3613;RO=91;RPL=0;RPP=11.6962;RPPR=200.614;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:44:44,0:44:1733:0:0:0,-13.2453,-156.199 0/0:23:23,0:23:911:0:0:0,-6.92369,-82.2922 0/1:29:24,4:24:969:4:153:-5.49032,0,-78.8897 dDocent_Contig_845 9 . C A 2242.11 . AB=0.761468;ABP=67.7361;AC=3;AF=0.5;AN=6;AO=83;CIGAR=1X;DP=109;DPB=109;DPRA=0;EPP=183.243;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1.33333;MQM=54.6506;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2906;QR=936;RO=25;RPL=0;RPP=183.243;RPPR=57.2971;RPR=83;RUN=1;SAF=83;SAP=183.243;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:3,27:3:115:27:953:-76.9148,0,-1.69399 0/1:47:16,30:16:600:30:1049:-80.5424,0,-40.363 0/1:32:6,26:6:221:26:904:-71.9047,0,-10.6128 dDocent_Contig_846 9 . A C 119.863 . AB=0.125;ABP=32.3252;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X2M3X;DP=85;DPB=85;DPRA=0;EPP=11.6962;EPPR=144.156;GTI=0;LEN=1;MEANALT=3.5;MQM=34.25;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=2547;RO=65;RPL=0;RPP=11.6962;RPPR=144.156;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:26:19,4,0,2:19:745:4,0,2:157,0,77:-7.1944,0,-60.0647,-12.914,-61.2688,-74.1815,-6.59413,-54.9471,-67.8597,-67.2576 0|1:24:15,4,3,1:15:581:4,3,1:158,116,40:-8.31482,0,-46.5471,-5.09962,-40.0063,-51.9179,-9.53147,-44.4551,-49.5254,-56.9707 0|0:35:31,2,1,0:31:1221:2,1,0:77,40,0:0,-3.00375,-102.872,-6.53497,-100.668,-106.688,-9.33193,-103.474,-106.989,-109.796 dDocent_Contig_847 29 . G A 1376.74 . AB=0.32716;ABP=45.0457;AC=3;AF=0.5;AN=6;AO=53;CIGAR=1X;DP=162;DPB=162;DPRA=0;EPP=118.098;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2122;QR=4353;RO=109;RPL=0;RPP=118.098;RPPR=239.701;RPR=53;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:30,12:30:1190:12:481:-30.9987,0,-94.7353 0/1:43:26,17:26:1052:17:681:-48.6754,0,-82.0252 0/1:77:53,24:53:2111:24:960:-63.523,0,-166.993 dDocent_Contig_849 129 . A T 214.004 . AB=0.285714;ABP=19.7617;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=151;DPB=151;DPRA=0.493421;EPP=33.4109;EPPR=300.502;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=464;QR=4662;RO=137;RPL=0;RPP=33.4109;RPPR=300.502;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=300.502;SRR=137;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:76:76,0:76:2601:0:0:0,-22.8783,-234.348 0/0:33:31,2:31:1036:2:69:0,-3.38133,-86.9907 0/1:42:30,12:30:1025:12:395:-23.2243,0,-79.9153 dDocent_Contig_851 48 . C T 146.969 . AB=0.153846;ABP=70.66;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=240;DPB=240;DPRA=0.742857;EPP=3.0103;EPPR=54.7102;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=397;QR=9033;RO=230;RPL=5;RPP=3.0103;RPPR=54.7102;RPR=5;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=230;SRP=502.449;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:87:87,0:87:3389:0:0:0,-26.1896,-305.068 0/1:65:55,10:55:2161:10:397:-16.5208,0,-175.105 0/0:88:88,0:88:3483:0:0:0,-26.4906,-313.518 dDocent_Contig_852 18 . C A 319.175 . AB=0.311111;ABP=16.956;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=45;DPB=45;DPRA=0;EPP=33.4109;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=554;QR=1227;RO=31;RPL=0;RPP=33.4109;RPPR=70.3259;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:11,9:11:441:9:357:-26.4713,0,-34.024 0/1:11:9,2:9:337:2:75:-3.80877,0,-27.3669 0/1:14:11,3:11:449:3:122:-7.15807,0,-36.5512 dDocent_Contig_853 40 . T G 200.623 . AB=0.196429;ABP=47.8357;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=76;DPB=76;DPRA=0;EPP=29.068;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=481;QR=2494;RO=64;RPL=0;RPP=29.068;RPPR=141.985;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:15,5:15:565:5:197:-12.0834,0,-45.1587 0/0:20:19,1:19:749:1:40:0,-2.02492,-63.7317 0/1:36:30,6:30:1180:6:244:-11.5017,0,-95.636 dDocent_Contig_854 154 . G A 215.127 . AB=0.229167;ABP=33.5919;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=123;DPB=123;DPRA=1.28;EPP=26.8965;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=416;QR=4458;RO=112;RPL=0;RPP=26.8965;RPPR=246.215;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=246.215;SRR=112;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:48:48,0:48:1887:0:0:0,-14.4494,-170.033 0/0:27:27,0:27:1073:0:0:0,-8.12781,-96.8584 0/1:48:37,11:37:1498:11:416:-23.3366,0,-120.608 dDocent_Contig_855 172 . C A 2869.07 . AB=0.815789;ABP=68.8402;AC=4;AF=0.666667;AN=6;AO=89;CIGAR=1X;DP=103;DPB=103;DPRA=0;EPP=196.271;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3472;QR=561;RO=14;RPL=89;RPP=196.271;RPPR=33.4109;RPR=0;RUN=1;SAF=0;SAP=196.271;SAR=89;SRF=0;SRP=33.4109;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:9,22:9:362:22:863:-68.6427,0,-23.6123 1/1:27:0,27:0:0:27:1055:-95.2392,-8.12781,0 0/1:45:5,40:5:199:40:1554:-126.548,0,-4.742 dDocent_Contig_856 16 . C T 122.963 . 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AB=0.738318;ABP=55.7953;AC=4;AF=0.666667;AN=6;AO=127;CIGAR=1X;DP=159;DPB=159;DPRA=0;EPP=278.787;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4574;QR=1176;RO=32;RPL=127;RPP=278.787;RPPR=72.4974;RPR=0;RUN=1;SAF=0;SAP=278.787;SAR=127;SRF=0;SRP=72.4974;SRR=32;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:52:4,48:4:148:48:1739:-143.106,-1.97159,0 0/1:55:19,36:19:697:36:1284:-99.303,0,-46.5048 0/1:52:9,43:9:331:43:1551:-124.223,0,-14.4871 dDocent_Contig_859 15 . T A 82.4591 . AB=0.12963;ABP=67.3502;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=87;DPB=87;DPRA=3.27273;EPP=18.2106;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=285;QR=3162;RO=80;RPL=0;RPP=18.2106;RPPR=176.728;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:47,7:47:1883:7:285:-9.76879,0,-153.419 0/0:22:22,0:22:860:0:0:0,-6.62266,-77.7078 0/0:11:11,0:11:419:0:0:0,-3.31133,-38.0468 dDocent_Contig_860 10 . A T 41.6494 . 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T A 556.687 . AB=0.297619;ABP=32.8939;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=84;DPB=84;DPRA=0;EPP=57.2971;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.932203;PAO=0;PQA=0;PQR=0;PRO=0;QA=949;QR=2247;RO=59;RPL=25;RPP=57.2971;RPPR=131.127;RPR=0;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:24,7:24:926:7:258:-14.2403,0,-74.3232 0/1:15:9,6:9:337:6:228:-16.369,0,-26.1671 0/1:38:26,12:26:984:12:463:-30.5822,0,-77.4285 dDocent_Contig_867 12 . A C 3592.33 . AB=0.1;ABP=58.6;AC=0;AF=0;AN=6;AO=4;CIGAR=1X2M8D1M;DP=173;DPB=170.333;DPRA=0;EPP=11.6962;EPPR=113.755;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=1997;RO=51;RPL=0;RPP=11.6962;RPPR=113.755;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:76:20,0,56:20:784:0,56:0,2163:-171.977,-177.998,-242.467,0,-64.8593,-48.0016 0|0:57:22,0,35:22:862:0,35:0,1405:-109.549,-116.172,-187.049,0,-71.2725,-60.7365 0|0:40:9,4,26:9:351:4,26:158,1043:-83.2298,-72.9388,-100.583,0,-15.8449,-21.0203 dDocent_Contig_868 7 . T A 3476.02 . AB=0.143162;ABP=2073.44;AC=3;AF=0.5;AN=6;AO=268;CIGAR=1X;DP=1872;DPB=1872;DPRA=0;EPP=584.965;EPPR=3481.71;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.8209;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.929104;PAIREDR=0.928215;PAO=0;PQA=0;PQR=0;PRO=0;QA=10178;QR=61007;RO=1602;RPL=0;RPP=584.965;RPPR=3481.71;RPR=268;RUN=1;SAF=268;SAP=584.965;SAR=0;SRF=1602;SRP=3481.71;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:903:757,144:757:28774:144:5489:-222.565,0,-2316.62 0/1:571:488,83:488:18581:83:3135:-110.42,0,-1499.48 0/1:398:357,41:357:13652:41:1554:-20.1397,0,-1108.27 dDocent_Contig_869 48 . T A 4671.12 . AB=0.697778;ABP=79.4558;AC=3;AF=0.5;AN=6;AO=157;CIGAR=1X;DP=225;DPB=225;DPRA=0;EPP=343.931;EPPR=148.499;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.955414;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5994;QR=2529;RO=67;RPL=0;RPP=343.931;RPPR=148.499;RPR=157;RUN=1;SAF=157;SAP=343.931;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:29,40:29:1115:40:1531:-117.276,0,-79.874 0/1:37:10,27:10:400:27:1057:-84.2868,0,-25.2212 0/1:119:28,90:28:1014:90:3406:-271.072,0,-55.9427 dDocent_Contig_870 107 . N C 95.1749 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=102;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:102:-9.51695,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_871 98 . N A 113.57 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=53.5;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=0;RO=0;RPL=8;RPP=20.3821;RPPR=0;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:39:-3.39135,-1.50515,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1/1:2:0,2:0:0:2:42:-3.9887,-0.60206,0 dDocent_Contig_873 8 . C T 220.902 . AB=0.215686;ABP=38.8183;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=163;DPB=163;DPRA=0.664286;EPP=29.068;EPPR=330.903;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=468;QR=5746;RO=151;RPL=0;RPP=29.068;RPPR=330.903;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=151;SRP=330.903;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:40,11:40:1513:11:429:-23.6131,0,-121.095 0/0:70:70,0:70:2657:0:0:0,-21.0721,-239.322 0/0:42:41,1:41:1576:1:39:0,-8.74669,-138.211 dDocent_Contig_874 44 . A T 5000.04 . AB=0.80303;ABP=160.936;AC=3;AF=0.5;AN=6;AO=159;CIGAR=1X;DP=198;DPB=198;DPRA=0;EPP=339.643;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6273;QR=1556;RO=39;RPL=1;RPP=339.643;RPPR=87.6977;RPR=158;RUN=1;SAF=159;SAP=348.274;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:83:8,75:8:319:75:2981:-243.401,0,-4.09035 0/1:34:4,30:4:160:30:1186:-96.7814,0,-4.54841 0/1:81:27,54:27:1077:54:2106:-165.343,0,-72.8324 dDocent_Contig_875 11 . A T 419.189 . AB=0.0576923;ABP=533.184;AC=1;AF=0.166667;AN=6;AO=18;CIGAR=1X6M1X2M;DP=312;DPB=312.3;DPRA=0;EPP=42.0968;EPPR=428.619;GTI=0;LEN=1;MEANALT=10.6667;MQM=57.1667;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0.888889;PAIREDR=0.989796;PAO=0;PQA=0;PQR=0;PRO=0;QA=697;QR=7618;RO=196;RPL=0;RPP=42.0968;RPPR=428.619;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=196;SRP=428.619;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:148:93,0,9,7,13:93:3598:0,9,7,13:0,347,278,499:-12.4899,-40.4857,-336.04,-12.5293,-308.087,-305.378,-17.7357,-313.294,-285.341,-311.187,0,-295.56,-267.608,-272.814,-291.647 0|1:75:41,4,8,4,5:41:1588:4,8,4,5:152,310,160,196:-13.1369,-13.5812,-142.852,0,-118.588,-128.075,-12.2913,-130.874,-117.3,-141.564,-9.54333,-128.126,-114.553,-126.839,-138.516 0|0:89:62,0,1,4,14:62:2432:0,1,4,14:0,40,157,517:-21.815,-40.4788,-240.503,-37.1823,-237.208,-236.907,-27.5614,-227.59,-224.295,-226.386,0,-200.021,-196.726,-187.109,-195.807 dDocent_Contig_876 18 . G A 158.702 . AB=0.0833333;ABP=57.2971;AC=0;AF=0;AN=6;AO=3;CIGAR=2X;DP=101;DPB=101;DPRA=0.818182;EPP=9.52472;EPPR=194.1;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=3369;RO=88;RPL=0;RPP=9.52472;RPPR=194.1;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:21:19,0,2:19:712:0,2:0,81:-1.3641,-7.08367,-65.3669,0,-58.6848,-58.0828 0|0:36:25,3,8:25:964:3,8:117,307:-17.6619,-15.5684,-93.8268,0,-69.5381,-76.7478 0|0:44:44,0,0:44:1693:0,0:0,0:0,-13.2453,-152.621,-13.2453,-152.621,-152.621 dDocent_Contig_877 8 . A C 855.985 . AB=0.315315;ABP=35.8954;AC=3;AF=0.5;AN=6;AO=35;CIGAR=1X2M1X;DP=111;DPB=111;DPRA=0;EPP=79.0118;EPPR=157.185;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1366;QR=2732;RO=71;RPL=0;RPP=79.0118;RPPR=157.185;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:33:22,9:22:837:9:348:-22.0446,0,-66.0278 0|1:16:9,6:9:345:6:237:-16.7979,0,-26.5029 0|1:62:40,20:40:1550:20:781:-52.2789,0,-121.44 dDocent_Contig_878 139 . G C 48.8127 . AB=0.116505;ABP=134.585;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X;DP=321;DPB=321;DPRA=0;EPP=37.7539;EPPR=665.309;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=552;QR=10145;RO=305;RPL=0;RPP=37.7539;RPPR=665.309;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=665.309;SRR=305;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:103:91,12:91:3021:12:412:-6.40414,0,-241.123 0/0:131:128,3:128:4204:3:105:0,-29.6388,-368.768 0/0:87:86,1:86:2920:1:35:0,-22.691,-259.547 dDocent_Contig_879 1 . N G 484.44 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=14;CIGAR=1X;DP=14;DPB=14;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=527;QR=0;RO=0;RPL=0;RPP=33.4109;RPPR=0;RPR=14;RUN=1;SAF=7;SAP=3.0103;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:75:-7.11959,-0.60206,0 1/1:12:0,12:0:0:12:452:-41.0229,-3.61236,0 ./.:.:.:.:.:.:.:. dDocent_Contig_881 98 . N C 34.0069 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=2;CIGAR=2X;DP=3;DPB=42.5;DPRA=2;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=49.5;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=44;PQA=1144;PQR=0;PRO=0;QA=36;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:1:0,0:0:0:0:0:0,0,0 .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:36:-3.22262,-0.60206,0 dDocent_Contig_882 12 . C T 203.531 . AB=0.227273;ABP=31.4368;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=26.8965;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=56.3158;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.807018;PAO=0;PQA=0;PQR=0;PRO=0;QA=445;QR=2281;RO=57;RPL=0;RPP=26.8965;RPPR=126.784;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:23,1:23:914:1:41:0,-3.13015,-74.4026 0/1:26:19,7:19:757:7:284:-18.1072,0,-59.1715 0/1:18:15,3:15:610:3:120:-5.76877,0,-45.2012 dDocent_Contig_883 62 . A G 1553.87 . AB=0.473684;ABP=3.81032;AC=3;AF=0.5;AN=6;AO=63;CIGAR=1X;DP=133;DPB=133;DPRA=0;EPP=139.813;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2222;QR=2124;RO=70;RPL=63;RPP=139.813;RPPR=155.013;RPR=0;RUN=1;SAF=63;SAP=139.813;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:22,14:22:690:14:501:-34.5892,0,-51.5577 0/1:64:36,28:36:1104:28:1003:-71.3161,0,-80.3761 0/1:33:12,21:12:330:21:718:-55.0043,0,-20.0372 dDocent_Contig_884 7 . T A 104.266 . AB=0.114754;ABP=160.282;AC=1;AF=0.166667;AN=6;AO=24;CIGAR=1X;DP=332;DPB=332;DPRA=0;EPP=55.1256;EPPR=669.652;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=894;QR=11612;RO=307;RPL=0;RPP=55.1256;RPPR=669.652;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=307;SRP=669.652;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:122:108,14:108:4080:14:537:-11.9495,0,-330.573 0/0:98:93,5:93:3506:5:194:0,-11.6681,-297.849 0/0:112:106,5:106:4026:5:163:0,-18.6813,-347.457 dDocent_Contig_885 52 . G A 143.842 . AB=0.285714;ABP=5.80219;AC=2;AF=0.333334;AN=6;AO=2;CIGAR=1X1M;DP=40;DPB=40;DPRA=0.583333;EPP=7.35324;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.939394;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=1299;RO=33;RPL=2;RPP=7.35324;RPPR=74.6689;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:12:12,0,0:12:467:0,0:0,0:0,-3.61236,-42.3785,-3.61236,-42.3785,-42.3785 0|1:7:5,0,2:5:192:0,2:0,80:-5.48458,-6.98973,-22.7385,0,-16.1438,-15.5417 0|1:21:16,5,0:16:640:5,0:204,0:-12.4224,0,-51.6134,-17.2389,-53.1186,-69.9519 dDocent_Contig_886 27 . C T 102.25 . AB=0;ABP=0;AC=0;AF=0;AN=6;AO=3;CIGAR=1X1M1X;DP=84;DPB=84;DPRA=1.5;EPP=9.52472;EPPR=161.528;GTI=0;LEN=1;MEANALT=2;MQM=55;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=2775;RO=73;RPL=0;RPP=9.52472;RPPR=161.528;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:19:13,0,5:13:507:0,5:0,191:-11.7476,-15.661,-57.341,0,-41.6755,-40.1703 0|0:26:25,0,1:25:943:0,1:0,37:0,-7.52575,-84.8131,-4.12895,-81.7864,-81.4853 0|0:39:35,3,1:35:1325:3,1:120,40:0,-0.676967,-108.373,-7.24073,-105.981,-115.541 dDocent_Contig_887 13 . T C 115.062 . AB=0.12;ABP=34.3664;AC=2;AF=0.333334;AN=6;AO=4;CIGAR=1X3M4D1M;DP=40;DPB=36.4444;DPRA=0;EPP=11.6962;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=1248;RO=32;RPL=0;RPP=11.6962;RPPR=72.4974;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:13,0,2:13:502:0,2:0,80:-3.07634,-6.98973,-48.2001,0,-41.6081,-41.0061 0|1:10:5,4,1:5:197:4,1:163,41:-11.9402,0,-14.9903,-10.0608,-12.8077,-25.9599 0|0:15:14,0,1:14:549:0,1:0,41:0,-4.21442,-49.3456,-0.420883,-45.9603,-45.6593 dDocent_Contig_888 15 . C G 44.5464 . AB=0.1875;ABP=16.582;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=75;DPB=75;DPRA=0.542373;EPP=9.52472;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=2890;RO=72;RPL=0;RPP=9.52472;RPPR=159.356;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:983:0:0:0,-7.52575,-88.765 0/1:16:13,3:13:525:3:119:-6.27853,0,-42.7808 0/0:34:34,0:34:1382:0:0:0,-10.235,-124.631 dDocent_Contig_889 11 . G A 281.765 . AB=0.27907;ABP=21.2406;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=182;DPB=182;DPRA=1.47826;EPP=31.2394;EPPR=369.989;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.988166;PAO=0;PQA=0;PQR=0;PRO=0;QA=511;QR=6760;RO=169;RPL=0;RPP=31.2394;RPPR=369.989;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=169;SRP=369.989;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:31,12:31:1218:12:470:-29.6994,0,-96.9505 0/0:46:46,0:46:1838:0:0:0,-13.8474,-165.633 0/0:93:92,1:92:3704:1:41:0,-23.9012,-329.267 dDocent_Contig_890 89 . A T 46.6094 . AB=0.25;ABP=9.52472;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=30;DPB=30;DPRA=1.33333;EPP=9.52472;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=932;RO=27;RPL=3;RPP=9.52472;RPPR=61.6401;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:9,3:9:313:3:105:-6.1838,0,-24.8947 0/0:9:9,0:9:310:0:0:0,-2.70927,-28.2342 0/0:9:9,0:9:309:0:0:0,-2.70927,-28.1435 dDocent_Contig_891 9 . T G 168.165 . AB=0.25;ABP=22.5536;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=2X;DP=62;DPB=62;DPRA=0;EPP=24.725;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=377;QR=2028;RO=52;RPL=0;RPP=24.725;RPPR=115.927;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:26:25,1:25:968:1:40:0,-3.8311,-83.4348 0|1:18:16,2:16:625:2:79:-2.07909,0,-51.167 0|1:18:11,7:11:435:7:258:-18.1538,0,-34.0864 dDocent_Contig_892 98 . N C 271.912 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=29.068;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=288;QR=0;RO=0;RPL=12;RPP=29.068;RPPR=0;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:58:-5.50886,-0.60206,0 1/1:8:0,8:0:0:8:171:-15.6009,-2.40824,0 1/1:2:0,2:0:0:2:59:-5.60359,-0.60206,0 dDocent_Contig_894 54 . C G 371.78 . AB=0.20202;ABP=79.3628;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X;DP=99;DPB=99;DPRA=0;EPP=46.4397;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=782;QR=3137;RO=79;RPL=20;RPP=46.4397;RPPR=174.557;RPR=0;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:30,14:30:1191:14:556:-37.1378,0,-94.2275 0/1:26:23,3:23:912:3:122:-3.54571,0,-74.5591 0/1:29:26,3:26:1034:3:104:-0.970575,0,-84.6256 dDocent_Contig_897 17 . G T 808.147 . AB=0.460317;ABP=3.872;AC=3;AF=0.5;AN=6;AO=29;CIGAR=1X;DP=63;DPB=63;DPRA=0;EPP=65.983;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1158;QR=1320;RO=34;RPL=0;RPP=65.983;RPPR=76.8404;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:9,7:9:352:7:281:-20.8446,0,-27.2179 0/1:34:15,19:15:576:19:756:-58.1264,0,-41.9391 0/1:13:10,3:10:392:3:121:-7.3666,0,-31.7178 dDocent_Contig_898 7 . T C 200.079 . AB=0.218182;ABP=40.9518;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X1M1X2M1X2M;DP=55;DPB=55;DPRA=0;EPP=29.068;EPPR=87.6977;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=455;QR=1523;RO=39;RPL=0;RPP=29.068;RPPR=87.6977;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:24:18,2,4:18:699:2,4:79,151:-6.94549,-5.85727,-62.701,0,-50.9294,-56.2269 0|1:11:7,0,3:7:273:0,3:0,113:-7.13522,-9.24243,-31.6875,0,-22.4317,-21.5286 0|1:20:14,0,5:14:551:0,5:0,191:-11.45,-15.6644,-60.9996,0,-45.3313,-43.8261 dDocent_Contig_901 9 . T A 77.8372 . AB=0.135593;ABP=71.062;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=160;DPB=160;DPRA=0;EPP=31.2394;EPPR=322.217;GTI=0;LEN=1;MEANALT=1;MQM=57.5385;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=497;QR=5642;RO=147;RPL=0;RPP=31.2394;RPPR=322.217;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=147;SRP=322.217;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:29,2:29:1117:2:78:0,-1.92846,-93.4299 0/0:70:67,3:67:2562:3:116:0,-10.2544,-219.961 0/1:59:51,8:51:1963:8:303:-9.60761,0,-159.149 dDocent_Contig_902 56 . C T 55.8798 . AB=0.272727;ABP=7.94546;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=36;DPB=36;DPRA=0.88;EPP=9.52472;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=1249;RO=33;RPL=3;RPP=9.52472;RPPR=74.6689;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:526:0:0:0,-4.21442,-47.6769 0/1:11:8,3:8:281:3:115:-7.41188,0,-22.3073 0/0:11:11,0:11:442:0:0:0,-3.31133,-40.1358 dDocent_Contig_903 51 . C T 136.998 . AB=0.454545;ABP=3.20771;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=34;DPB=34;DPRA=0.956522;EPP=13.8677;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=1161;RO=29;RPL=5;RPP=13.8677;RPPR=65.983;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:347:0:0:0,-2.70927,-31.5855 0/0:14:14,0:14:568:0:0:0,-4.21442,-51.462 0/1:11:6,5:6:246:5:205:-15.5237,0,-19.2088 dDocent_Contig_905 141 . G A 269.493 . AB=0.215385;ABP=48.7448;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1X;DP=200;DPB=200;DPRA=0.75;EPP=35.5824;EPPR=404.733;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=538;QR=7227;RO=185;RPL=0;RPP=35.5824;RPPR=404.733;RPR=15;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=404.733;SRR=185;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:51,14:51:1964:14:530:-28.4722,0,-157.393 0/0:55:54,1:54:2123:1:8:0,-15.7567,-190.457 0/0:80:80,0:80:3140:0:0:0,-24.0824,-282.671 dDocent_Contig_906 16 . T A 781.774 . AB=0.344828;ABP=21.2057;AC=3;AF=0.5;AN=6;AO=30;CIGAR=1X;DP=87;DPB=87;DPRA=0;EPP=68.1545;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1209;QR=2258;RO=57;RPL=0;RPP=68.1545;RPPR=126.784;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:6,10:6:236:10:401:-31.6334,0,-16.7938 0/1:33:24,9:24:961:9:362:-23.0102,0,-76.8572 0/1:38:27,11:27:1061:11:446:-29.0566,0,-84.338 dDocent_Contig_907 85 . G A 237.517 . AB=0.212121;ABP=50.5195;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=80;DPB=80;DPRA=2.35714;EPP=33.4109;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=508;QR=2430;RO=66;RPL=14;RPP=33.4109;RPPR=146.327;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:26,3:26:943:3:104:-0.971906,0,-76.4531 0/1:37:26,11:26:977:11:404:-25.5623,0,-77.105 0/0:14:14,0:14:510:0:0:0,-4.21442,-46.2398 dDocent_Contig_908 9 . T G 35.6663 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1M2D1X1M1X2M1X1M1X1M2I2M;DP=27;DPB=27;DPRA=0.7;EPP=7.35324;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=926;RO=25;RPL=0;RPP=7.35324;RPPR=57.2971;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:9:9,0:9:332:0:0:0,-2.70927,-30.2305 0|1:7:5,2:5:186:2:79:-5.39042,0,-14.9936 0|0:11:11,0:11:408:0:0:0,-3.31133,-37.0662 dDocent_Contig_909 95 . G A 93.6157 . AB=0.3125;ABP=7.89611;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=88;DPB=88;DPRA=0.573171;EPP=18.2106;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=2650;RO=81;RPL=7;RPP=18.2106;RPPR=178.9;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:29,2:29:970:2:66:0,-3.06375,-81.3377 0/0:41:41,0:41:1297:0:0:0,-12.3422,-117.011 0/1:16:11,5:11:383:5:174:-11.1855,0,-29.9885 dDocent_Contig_913 11 . G A 22639.7 . AB=0.835294;ABP=86.0116;AC=5;AF=0.833333;AN=6;AO=671;CIGAR=1X1M1X;DP=707;DPB=707;DPRA=0;EPP=1460.07;EPPR=74.6689;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.682563;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=26163;QR=1213;RO=33;RPL=0;RPP=1460.07;RPPR=74.6689;RPR=671;RUN=1;SAF=671;SAP=1460.07;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:278:6,271:6:202:271:10577:-932.896,-65.0965,0 1|1:344:13,329:13:485:329:12761:-1103.82,-59.3439,0 0|1:85:14,71:14:526:71:2825:-228.781,0,-22.0956 dDocent_Contig_914 10 . G A 68.0397 . AB=0.151515;ABP=37.8197;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=131;DPB=131;DPRA=0;EPP=20.3821;EPPR=270.101;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=325;QR=4910;RO=123;RPL=0;RPP=20.3821;RPPR=270.101;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:47:45,2:45:1805:2:82:0,-6.36873,-154.883 0/1:33:28,5:28:1110:5:202:-8.62788,0,-90.253 0/0:51:50,1:50:1995:1:41:0,-11.258,-175.647 dDocent_Contig_915 114 . G T 15823.8 . AB=0.363328;ABP=289.7;AC=3;AF=0.5;AN=6;AO=642;CIGAR=1X1M1X;DP=1767;DPB=1767;DPRA=0;EPP=1379.78;EPPR=2203.38;GTI=0;LEN=1;MEANALT=6;MQM=54.8364;MQMR=59.9647;NS=3;NUMALT=1;ODDS=0;PAIRED=0.774143;PAIREDR=0.882745;PAO=0;PQA=0;PQR=0;PRO=0;QA=24462;QR=41143;RO=1049;RPL=640;RPP=1379.78;RPPR=2211.93;RPR=2;RUN=1;SAF=0;SAP=1397.1;SAR=642;SRF=1;SRP=2272.21;SRR=1048;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:671:415,226:415:16214:226:8599:-548.517,0,-1264.88 0|1:722:426,265:426:16733:265:10119:-679.466,0,-1296.43 0|1:374:208,151:208:8196:151:5744:-359.924,0,-628.774 dDocent_Contig_917 12 . G A 2832.74 . 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AB=0.215686;ABP=38.8183;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=145;DPB=145;DPRA=1.08511;EPP=26.8965;EPPR=293.988;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=436;QR=5331;RO=134;RPL=0;RPP=26.8965;RPPR=293.988;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=134;SRP=293.988;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:44:44,0:44:1749:0:0:0,-13.2453,-157.634 0/1:51:40,11:40:1582:11:436:-24.2429,0,-127.268 0/0:50:50,0:50:2000:0:0:0,-15.0515,-180.188 dDocent_Contig_919 14 . A T 36.9265 . 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AB=0.596774;ABP=8.05372;AC=2;AF=0.333333;AN=6;AO=37;CIGAR=1X;DP=80;DPB=80;DPRA=1.72222;EPP=83.3548;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1409;QR=1692;RO=43;RPL=0;RPP=83.3548;RPPR=96.3836;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:708:0:0:0,-5.41854,-64.0474 0/1:18:10,8:10:400:8:302:-22.1155,0,-30.9408 0/1:44:15,29:15:584:29:1107:-86.6568,0,-39.6493 dDocent_Contig_921 107 . N T 135.042 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=139;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:104:-9.70309,-0.90309,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_923 37 . T C 439.151 . AB=0.272727;ABP=17.8158;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X2M1X9M1X6M1X11M;DP=83;DPB=81.625;DPRA=0;EPP=22.5536;EPPR=72.4974;GTI=0;LEN=1;MEANALT=12;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=288;QR=1057;RO=32;RPL=9;RPP=22.5536;RPPR=72.4974;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:33:8,3,9,0,4,0:8:268:3,9,0,4,0:97,288,0,130,0:-20.8215,-15.3982,-36.2169,0,-13.9014,-19.0236,-23.2298,-37.12,-21.7329,-44.9482,-12.7285,-26.6223,-11.2317,-34.4517,-33.2476,-23.2298,-37.12,-21.7329,-44.9482,-34.4517,-44.9482 0|0:29:18,0,0,5,1,3:18:589:0,0,5,1,3:0,0,177,35,112:-9.0119,-14.4304,-62.0001,-14.4304,-62.0001,-62.0001,0,-47.5789,-47.5789,-46.0737,-11.5814,-59.1517,-59.1517,-44.7301,-58.8507,-5.24779,-52.8261,-52.8261,-38.403,-49.9774,-51.923 0|0:21:6,4,0,7,0,2:6:200:4,0,7,0,2:135,0,261,0,75:-19.6045,-10.4632,-25.4527,-21.4107,-26.6569,-37.6018,0,-5.2551,-16.2114,-14.1041,-21.4107,-26.6569,-37.6018,-16.2114,-37.6018,-15.2592,-20.5064,-31.453,-10.0557,-31.453,-30.851 dDocent_Contig_924 25 . C T 196.16 . AB=0.189655;ABP=51.5315;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=149;DPB=149;DPRA=1.27473;EPP=26.8965;EPPR=302.673;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=425;QR=5474;RO=138;RPL=0;RPP=26.8965;RPPR=302.673;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=138;SRP=302.673;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:47,11:47:1862:11:425:-21.1388,0,-150.327 0/0:39:39,0:39:1514:0:0:0,-11.7402,-136.505 0/0:52:52,0:52:2098:0:0:0,-15.6536,-188.995 dDocent_Contig_925 61 . T C 3262.93 . AB=0.0645161;ABP=156.204;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X3M1X;DP=143;DPB=143;DPRA=0;EPP=16.0391;EPPR=72.4974;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=1217;RO=32;RPL=6;RPP=16.0391;RPPR=72.4974;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:50:20,0,30:20:758:0,30:0,1146:-88.3826,-94.4032,-156.545,0,-62.5214,-53.4905 0|0:47:12,2,31:12:459:2,31:79,1226:-97.2782,-94.3897,-131.448,0,-31.1524,-28.3228 1|0:46:0,4,42:0:0:4,42:153,1603:-144.446,-131.891,-130.687,-12.9366,0,-0.293332 dDocent_Contig_926 31 . C T 133.884 . AB=0.155172;ABP=62.913;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=173;DPB=173;DPRA=1.55952;EPP=31.2394;EPPR=350.446;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.8125;PAO=0;PQA=0;PQR=0;PRO=0;QA=523;QR=6380;RO=160;RPL=0;RPP=31.2394;RPPR=350.446;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=160;SRP=350.446;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:42,0:42:1670:0:0:0,-12.6433,-150.531 0/1:58:49,9:49:1956:9:359:-15.2123,0,-158.779 0/0:73:69,4:69:2754:4:164:0,-6.82529,-232.818 dDocent_Contig_927 8 . A T 96.2054 . AB=0.117647;ABP=154.119;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=175;DPB=175;DPRA=0;EPP=37.7539;EPPR=348.274;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=56.0881;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.685535;PAO=0;PQA=0;PQR=0;PRO=0;QA=614;QR=6068;RO=159;RPL=0;RPP=37.7539;RPPR=348.274;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=159;SRP=348.274;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:56:54,2:54:2047:2:78:0,-9.45421,-171.742 0/1:50:44,6:44:1680:6:228:-5.83266,0,-135.857 0/1:69:61,8:61:2341:8:308:-7.31073,0,-189.704 dDocent_Contig_928 11 . G A 10356.5 . AB=0.25;ABP=231.015;AC=6;AF=1;AN=6;AO=105;CIGAR=1X3M1X;DP=420;DPB=420;DPRA=0;EPP=231.015;EPPR=70.3259;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=5.55112e-17;PAIRED=0.990476;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4140;QR=1187;RO=31;RPL=0;RPP=231.015;RPPR=70.3259;RPR=105;RUN=1;SAF=105;SAP=231.015;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:186:8,0,126,44,8:8:308:0,126,44,8:0,4912,1716,320:-517.064,-519.472,-544.761,-115.76,-141.048,-103.118,-378.422,-403.711,0,-390.466,-493.112,-518.401,-114.687,-377.351,-515.992 1|1:137:9,0,84,29,8:9:343:0,84,29,8:0,3312,1146,314:-335.952,-338.661,-366.795,-66.1762,-94.3081,-69.0216,-244.355,-272.488,0,-263.758,-312.838,-340.971,-68.4846,-246.665,-338.563 1|1:97:14,7,40,32,4:14:536:7,40,32,4:276,1592,1278,161:-188.154,-169.66,-211.533,-61.2883,-82.5587,-93.2257,-87.1066,-108.378,0,-121.453,-179.099,-200.371,-91.9971,-117.816,-221.875 dDocent_Contig_929 7 . T A 212.308 . AB=0.0575916;ABP=327.719;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X6M;DP=191;DPB=191;DPRA=0;EPP=26.8965;EPPR=307.016;GTI=0;LEN=1;MEANALT=3.66667;MQM=60;MQMR=59.95;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.921429;PAO=0;PQA=0;PQR=0;PRO=0;QA=408;QR=5448;RO=140;RPL=0;RPP=26.8965;RPPR=307.016;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=140;SRP=307.016;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:56:40,4,8,2:40:1555:4,8,2:152,230,74:-4.58047,-4.90841,-131.561,0,-116.118,-125.404,-10.5594,-126.712,-121.76,-137.806 0|1:60:44,0,9,6:44:1723:0,9,6:0,252,217:-4.5034,-17.7487,-159.486,-0.275328,-141.971,-139.262,0,-141.776,-124.264,-139.969 0|1:75:56,0,14,3:56:2170:0,14,3:0,445,117:-17.5984,-34.456,-212.782,0,-178.329,-174.115,-24.8236,-203.164,-168.711,-202.261 dDocent_Contig_930 107 . N A 145.568 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=147;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:58:-5.50928,-0.60206,0 1/1:1:0,1:0:0:1:23:-2.29991,-0.30103,0 1/1:2:0,2:0:0:2:66:-6.26836,-0.60206,0 dDocent_Contig_931 14 . C T 62.9869 . AB=0.0909091;ABP=34.9902;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X1M3X1M2X1M;DP=60;DPB=60;DPRA=1.15789;EPP=7.35324;EPPR=118.098;GTI=0;LEN=1;MEANALT=3;MQM=19;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.811321;PAO=0;PQA=0;PQR=0;PRO=0;QA=38;QR=2064;RO=53;RPL=0;RPP=7.35324;RPPR=118.098;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:11:11,0,0:11:435:0,0:0,0:0,-3.31133,-39.5057,-3.31133,-39.5057,-39.5057 0|1:22:15,4,2:15:571:4,2:153,38:-8.1226,0,-45.7435,-10.4209,-44.6911,-56.6442 0|0:27:27,0,0:27:1058:0,0:0,0:0,-8.12781,-95.5182,-8.12781,-95.5182,-95.5182 dDocent_Contig_932 12 . A G 242.405 . AB=0.294118;ABP=15.5282;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=92;DPB=92;DPRA=1.17241;EPP=24.725;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=396;QR=3255;RO=82;RPL=0;RPP=24.725;RPPR=181.071;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:24,10:24:961:10:396:-25.7634,0,-76.5557 0/0:20:20,0:20:762:0:0:0,-6.0206,-68.8843 0/0:38:38,0:38:1532:0:0:0,-11.4391,-138.118 dDocent_Contig_933 19 . A G 507.366 . AB=0.338983;ABP=16.2968;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X;DP=59;DPB=59;DPRA=0;EPP=46.4397;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=810;QR=1553;RO=39;RPL=0;RPP=46.4397;RPPR=87.6977;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:14,3:14:545:3:121:-6.16269,0,-44.2702 0/1:20:7,13:7:281:13:529:-41.9357,0,-19.642 0/1:22:18,4:18:727:4:160:-8.16114,0,-59.1315 dDocent_Contig_935 134 . A G 1203.83 . AB=0.576471;ABP=7.3277;AC=3;AF=0.5;AN=6;AO=49;CIGAR=1X;DP=85;DPB=85;DPRA=0;EPP=109.412;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=49.5102;MQMR=44.9167;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1679;QR=993;RO=36;RPL=0;RPP=109.412;RPPR=81.1833;RPR=49;RUN=1;SAF=0;SAP=109.412;SAR=49;SRF=0;SRP=81.1833;SRR=36;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:5,25:5:126:25:867:-68.9991,0,-2.50724 0/1:25:11,14:11:290:14:475:-35.3946,0,-18.7307 0/1:30:20,10:20:577:10:337:-21.4693,0,-42.8873 dDocent_Contig_936 17 . C T 43.388 . AB=0.176471;ABP=18.4661;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=64;DPB=64;DPRA=0.723404;EPP=9.52472;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=2399;RO=61;RPL=0;RPP=9.52472;RPPR=135.47;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:487:0:0:0,-3.91339,-44.1645 0/1:17:14,3:14:551:3:121:-6.16269,0,-44.8135 0/0:34:34,0:34:1361:0:0:0,-10.235,-122.75 dDocent_Contig_937 24 . A G 1913.21 . AB=0.148148;ABP=32.0437;AC=0;AF=0;AN=6;AO=4;CIGAR=2X;DP=120;DPB=120;DPRA=0;EPP=11.6962;EPPR=115.927;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=150;QR=2018;RO=52;RPL=0;RPP=11.6962;RPPR=115.927;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:42:17,0,25:17:641:0,25:0,989:-76.6702,-81.7878,-134.298,0,-52.8949,-45.3691 0|0:27:14,4,9:14:557:4,9:150,359:-25.3678,-17.3045,-61.9607,0,-33.5987,-43.1694 0|0:51:21,0,30:21:820:0,30:0,1221:-94.8055,-101.127,-168.523,0,-67.793,-58.7621 dDocent_Contig_938 1 . N G 75.6437 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=46;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:82:-7.56329,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_946 98 . N G 3958.72 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=141;CIGAR=1X;DP=145;DPB=145;DPRA=0;EPP=283.685;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.964539;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=4389;QR=0;RO=0;RPL=141;RPP=309.188;RPPR=0;RPR=0;RUN=1;SAF=138;SAP=283.685;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:49:0,46:0:0:46:1399:-125.815,-13.8474,0 1/1:37:0,37:0:0:37:1161:-104.773,-11.1381,0 1/1:59:0,58:0:0:58:1829:-164.807,-17.4597,0 dDocent_Contig_948 1 . N G 47.1492 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=25;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:77:-4.71383,-0.60206,0 dDocent_Contig_949 63 . C G 94.2761 . AB=0.1875;ABP=30.1537;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=94;DPB=94;DPRA=0;EPP=22.5536;EPPR=183.243;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=342;QR=3034;RO=83;RPL=9;RPP=22.5536;RPPR=183.243;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:29,2:29:1080:2:75:0,-2.39008,-90.4701 0/1:32:26,6:26:946:6:228:-11.2515,0,-75.8146 0/0:30:28,1:28:1008:1:39:0,-5.08813,-87.2497 dDocent_Contig_960 8 . A C 7438.19 . 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AB=0.277778;ABP=10.7311;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=54;DPB=54;DPRA=1;EPP=13.8677;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=1962;RO=49;RPL=0;RPP=13.8677;RPPR=109.412;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:571:0:0:0,-4.21442,-51.7319 0/0:22:22,0:22:862:0:0:0,-6.62266,-77.8827 0/1:18:13,5:13:529:5:204:-13.3255,0,-42.5383 dDocent_Contig_973 44 . A G 1069.81 . 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AB=0.388169;ABP=137.057;AC=3;AF=0.5;AN=6;AO=479;CIGAR=1X;DP=1234;DPB=1234;DPRA=0;EPP=1043.15;EPPR=1633.79;GTI=0;LEN=1;MEANALT=1.66667;MQM=59.6388;MQMR=59.972;NS=3;NUMALT=1;ODDS=0;PAIRED=0.995825;PAIREDR=0.988016;PAO=0;PQA=0;PQR=0;PRO=0;QA=18208;QR=28380;RO=751;RPL=0;RPP=1043.15;RPPR=1633.79;RPR=479;RUN=1;SAF=479;SAP=1043.15;SAR=0;SRF=751;SRP=1633.79;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:334:170,162:170:6367:162:6146:-452.585,0,-472.562 0/1:339:219,118:219:8205:118:4476:-295.044,0,-636.448 0/1:561:362,199:362:13808:199:7586:-513.651,0,-1073.25 dDocent_Contig_984 69 . A C 59.2669 . AB=0.142857;ABP=41.7866;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=70;DPB=70;DPRA=0;EPP=20.3821;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.983871;PAO=0;PQA=0;PQR=0;PRO=0;QA=315;QR=2412;RO=62;RPL=8;RPP=20.3821;RPPR=137.642;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:10,1:10:392:1:40:-0.684349,0,-32.3232 0/1:24:20,4:20:771:4:162:-7.74224,0,-62.4791 0/0:35:32,3:32:1249:3:113:0,-3.37456e-05,-102.14 dDocent_Contig_986 184 . G C 179.712 . AB=0.189655;ABP=51.5315;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=26.8965;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=435;QR=1865;RO=47;RPL=11;RPP=26.8965;RPPR=105.07;RPR=0;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=105.07;SRR=47;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:19,4:19:752:4:156:-7.49326,0,-61.0762 0/1:26:20,6:20:796:6:238:-13.967,0,-64.1315 0/1:9:8,1:8:317:1:41:-1.3853,0,-26.1835 dDocent_Contig_987 39 . C A 1443.02 . AB=0.401515;ABP=14.1309;AC=3;AF=0.5;AN=6;AO=53;CIGAR=8M1X1M;DP=132;DPB=127.2;DPRA=0;EPP=118.098;EPPR=159.356;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2081;QR=2799;RO=72;RPL=0;RPP=118.098;RPPR=159.356;RPR=53;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:35:21,0,14:21:814:0,14:0,526:-37.1292,-43.4508,-110.329,0,-67.2585,-63.0441 0|1:41:22,5,13:22:866:5,13:186,501:-34.5135,-25.9162,-95.654,0,-56.0329,-67.3392 0|1:56:29,1,26:29:1119:1,26:41,1054:-78.1821,-83.5277,-175.103,0,-88.4783,-84.0364 dDocent_Contig_988 11 . G A 1521.95 . AB=0.392857;ABP=16.9698;AC=3;AF=0.5;AN=6;AO=55;CIGAR=1X;DP=140;DPB=140;DPRA=0;EPP=122.441;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=52.2118;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.776471;PAO=0;PQA=0;PQR=0;PRO=0;QA=2210;QR=3398;RO=85;RPL=0;RPP=122.441;RPPR=187.585;RPR=55;RUN=1;SAF=55;SAP=122.441;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:24,22:24:962:22:881:-65.7497,0,-68.8496 0/1:41:31,10:31:1229:10:392:-23.2926,0,-94.3628 0/1:53:30,23:30:1207:23:937:-68.6753,0,-75.9459 dDocent_Contig_989 7 . A T 1165.22 . AB=0.0843023;ABP=519.341;AC=0;AF=0;AN=6;AO=29;CIGAR=1M1X1M2X1M;DP=344;DPB=363.667;DPRA=0;EPP=42.621;EPPR=34.6451;GTI=0;LEN=1;MEANALT=5;MQM=21.3103;MQMR=37.3741;NS=3;NUMALT=3;ODDS=0;PAIRED=0.137931;PAIREDR=0.302158;PAO=0;PQA=0;PQR=0;PRO=0;QA=598;QR=5167;RO=139;RPL=0;RPP=65.983;RPPR=304.845;RPR=29;RUN=1;SAF=26;SAP=42.621;SAR=3;SRF=92;SRP=34.6451;SRR=47;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:111:40,3,39,25:40:1477:3,39,25:111,675,649:-34.7561,-38.1087,-126.949,-7.38508,-88.4312,-85.3762,0,-81.0777,-50.3598,-82.2381 0|0:145:77,16,26,24:77:2852:16,26,24:354,566,738:-31.9705,-34.097,-211.533,-17.1185,-178.322,-191.546,0,-161.233,-144.256,-175.062 0|0:88:22,10,45,6:22:838:10,45,6:133,943,184:-55.3183,-55.5383,-105.069,0,-46.2048,-39.036,-48.061,-94.2052,-38.7041,-98.8012 dDocent_Contig_990 86 . A G 91.0481 . AB=0.181818;ABP=41.702;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=161;DPB=161;DPRA=0.912281;EPP=24.725;EPPR=330.903;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=335;QR=5210;RO=151;RPL=10;RPP=24.725;RPPR=330.903;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=151;SRP=330.903;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:57:57,0:57:1978:0:0:0,-17.1587,-178.299 0/1:44:36,8:36:1249:8:265:-10.9287,0,-99.4692 0/0:60:58,2:58:1983:2:70:0,-11.4144,-172.099 dDocent_Contig_991 62 . G C 129.777 . AB=0.149254;ABP=74.6041;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=93;DPB=93;DPRA=1.28846;EPP=24.725;EPPR=181.071;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=400;QR=3185;RO=82;RPL=10;RPP=24.725;RPPR=181.071;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:1011:0:0:0,-7.82678,-91.289 0/1:33:28,5:28:1063:5:200:-8.44593,0,-86.023 0/1:34:28,5:28:1111:5:200:-8.05462,0,-89.9559 dDocent_Contig_992 133 . G T 361.717 . AB=0.4;ABP=6.48466;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=40;DPB=40;DPRA=0;EPP=37.7539;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=585;QR=927;RO=24;RPL=0;RPP=37.7539;RPPR=55.1256;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:7,3:7:270:3:116:-7.8074,0,-21.6537 0/1:20:10,10:10:389:10:352:-25.9871,0,-29.3476 0/1:10:7,3:7:268:3:117:-7.90008,0,-21.4733 dDocent_Contig_993 162 . G C 2928.51 . AB=0.769231;ABP=52.119;AC=4;AF=0.666667;AN=6;AO=95;CIGAR=1X;DP=116;DPB=116;DPRA=0;EPP=209.3;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3666;QR=829;RO=21;RPL=95;RPP=209.3;RPPR=48.6112;RPR=0;RUN=1;SAF=0;SAP=209.3;SAR=95;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:9,39:9:363:39:1486:-119.544,0,-18.5852 1/1:38:3,35:3:117:35:1342:-110.13,-0.529309,0 0/1:30:9,21:9:349:21:838:-66.6982,0,-22.7351 dDocent_Contig_994 64 . G T 2175.44 . AB=0.7;ABP=37.7539;AC=3;AF=0.5;AN=6;AO=70;CIGAR=1X;DP=100;DPB=100;DPRA=0;EPP=155.013;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2803;QR=1208;RO=30;RPL=70;RPP=155.013;RPPR=68.1545;RPR=0;RUN=1;SAF=70;SAP=155.013;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:11,14:11:448:14:561:-43.3054,0,-33.15 0/1:43:15,28:15:606:28:1113:-87.5052,0,-41.9341 0/1:32:4,28:4:154:28:1129:-92.2563,0,-4.59646 dDocent_Contig_995 12 . A G 1388.22 . AB=0.144737;ABP=919.486;AC=3;AF=0.5;AN=6;AO=121;CIGAR=1X3M1X3M1X;DP=836;DPB=836.444;DPRA=0;EPP=248.674;EPPR=1018.2;GTI=0;LEN=1;MEANALT=16.3333;MQM=35.8182;MQMR=55.6333;NS=3;NUMALT=2;ODDS=0;PAIRED=0.198347;PAIREDR=0.42485;PAO=0;PQA=0;PQR=0;PRO=0;QA=4605;QR=19485;RO=499;RPL=0;RPP=265.758;RPPR=1086.58;RPR=121;RUN=1;SAF=119;SAP=248.674;SAR=2;SRF=491;SRP=1018.2;SRR=8;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:336:205,48,17:205:8009:48,17:1814,667:-59.228,0,-619.808,-66.5547,-579.878,-695.712 0|1:270:163,47,3:163:6344:47,3:1788,91:-61.1597,0,-491.593,-102.966,-498.48,-607.82 0|1:230:131,26,17:131:5132:26,17:1003,673:-23.9572,0,-404.09,-10.1392,-358.669,-416.952 dDocent_Contig_996 67 . T C 205.241 . AB=0.357143;ABP=7.97367;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=56;DPB=56;DPRA=2;EPP=24.725;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.956522;PAO=0;PQA=0;PQR=0;PRO=0;QA=335;QR=1419;RO=46;RPL=5;RPP=3.0103;RPPR=3.19912;RPR=5;RUN=1;SAF=5;SAP=3.0103;SAR=5;SRF=24;SRP=3.19912;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:18,10:18:565:10:335:-22.047,0,-42.7233 0/0:16:16,0:16:477:0:0:0,-4.81648,-43.2181 0/0:12:12,0:12:377:0:0:0,-3.61236,-34.2359 dDocent_Contig_998 88 . T A 671.474 . AB=0.303571;ABP=40.5458;AC=3;AF=0.5;AN=6;AO=34;CIGAR=1X;DP=112;DPB=112;DPRA=0;EPP=76.8404;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1171;QR=2646;RO=78;RPL=34;RPP=76.8404;RPPR=172.385;RPR=0;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:28,8:28:975:8:276:-14.3388,0,-77.2275 0/1:26:18,8:18:612:8:277:-17.4402,0,-47.5728 0/1:50:32,18:32:1059:18:618:-40.8913,0,-80.5534 dDocent_Contig_999 16 . A T 48.512 . AB=0.151515;ABP=37.8197;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=51;DPB=51;DPRA=0;EPP=16.0391;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=236;QR=1811;RO=45;RPL=0;RPP=16.0391;RPPR=100.727;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:17,1:17:685:1:41:0,-1.32397,-57.8851 0/1:10:8,2:8:319:2:74:-4.01547,0,-26.0666 0/1:23:20,3:20:807:3:121:-4.35651,0,-66.0209 dDocent_Contig_1000 92 . T C 231.573 . AB=0.315789;ABP=14.2105;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=52;DPB=52;DPRA=1.35714;EPP=29.068;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=416;QR=1307;RO=40;RPL=12;RPP=29.068;RPPR=89.8692;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:12,6:12:400:6:208:-13.6411,0,-30.9033 0/1:20:14,6:14:469:6:208:-13.039,0,-36.5112 0/0:14:14,0:14:438:0:0:0,-4.21442,-39.7217 dDocent_Contig_1002 134 . G T 200.532 . AB=0.22;ABP=37.059;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=62;DPB=62;DPRA=2.08333;EPP=26.8965;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=421;QR=1954;RO=51;RPL=0;RPP=26.8965;RPPR=113.755;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=113.755;SRR=51;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:23,7:23:872:7:266:-15.2712,0,-69.7678 0/1:20:16,4:16:624:4:155:-8.30484,0,-50.4794 0/0:12:12,0:12:458:0:0:0,-3.61236,-41.57 dDocent_Contig_1003 43 . G A 234.992 . AB=0.282051;ABP=19.1015;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=137;DPB=137;DPRA=0.795918;EPP=26.8965;EPPR=259.52;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=408;QR=5024;RO=126;RPL=0;RPP=26.8965;RPPR=259.52;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=126;SRP=276.616;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:58:58,0:58:2303:0:0:0,-17.4597,-207.426 0/0:40:40,0:40:1592:0:0:0,-12.0412,-143.517 0/1:39:28,11:28:1129:11:408:-25.3231,0,-90.1508 dDocent_Contig_1004 16 . C T 274.767 . AB=0.103139;ABP=613.145;AC=1;AF=0.166667;AN=6;AO=89;CIGAR=1X;DP=1161;DPB=1161;DPRA=0;EPP=196.271;EPPR=2330.83;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8871;NS=3;NUMALT=1;ODDS=0;PAIRED=0.775281;PAIREDR=0.788246;PAO=0;PQA=0;PQR=0;PRO=0;QA=3541;QR=42902;RO=1072;RPL=0;RPP=196.271;RPPR=2330.83;RPR=89;RUN=1;SAF=89;SAP=196.271;SAR=0;SRF=1072;SRP=2330.83;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:430:403,27:403:16130:27:1084:0,-31.5965,-1352.56 0/1:446:400,46:400:15930:46:1815:-29.3006,0,-1296.92 0/0:285:269,16:269:10842:16:642:0,-27.6797,-915.362 dDocent_Contig_1005 86 . A C 96.1048 . AB=0.277778;ABP=10.7311;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=56;DPB=56;DPRA=0.947368;EPP=13.8677;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=180;QR=1815;RO=51;RPL=5;RPP=13.8677;RPPR=113.755;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:13,5:13:471:5:180:-11.1334,0,-37.3117 0/0:25:25,0:25:887:0:0:0,-7.52575,-80.1443 0/0:13:13,0:13:457:0:0:0,-3.91339,-41.4641 dDocent_Contig_1006 19 . G A 1306.47 . AB=0.478723;ABP=3.37991;AC=3;AF=0.5;AN=6;AO=45;CIGAR=1X;DP=94;DPB=94;DPRA=0;EPP=100.727;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1816;QR=1929;RO=49;RPL=0;RPP=100.727;RPPR=109.412;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:34,14:34:1334:14:567:-36.9236,0,-105.879 0/1:25:3,22:3:115:22:885:-72.4339,0,-3.19835 0/1:21:12,9:12:480:9:364:-26.8028,0,-37.2289 dDocent_Contig_1008 89 . T C 80.657 . AB=0.25;ABP=13.8677;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=73;DPB=73;DPRA=0.754717;EPP=13.8677;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=173;QR=2329;RO=68;RPL=5;RPP=13.8677;RPPR=150.67;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:32,0:32:1101:0:0:0,-9.63296,-99.3981 0/1:20:15,5:15:515:5:173:-9.88961,0,-40.6559 0/0:21:21,0:21:713:0:0:0,-6.32163,-64.4859 dDocent_Contig_1009 39 . A G 59.3622 . AB=0.230769;ABP=11.1951;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=68;DPB=68;DPRA=0.472727;EPP=9.52472;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=2560;RO=65;RPL=0;RPP=9.52472;RPPR=144.156;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:10,3:10:400:3:122:-7.4591,0,-32.4465 0/0:24:24,0:24:932:0:0:0,-7.22472,-84.1836 0/0:31:31,0:31:1228:0:0:0,-9.33193,-110.793 dDocent_Contig_1010 9 . G T 3416.11 . AB=0.0569307;ABP=691.883;AC=0;AF=0;AN=6;AO=23;CIGAR=1X3M1X2M1X3M2X2M;DP=404;DPB=404;DPRA=0;EPP=52.9542;EPPR=42.0968;GTI=0;LEN=1;MEANALT=19.3333;MQM=60;MQMR=60;NS=3;NUMALT=9;ODDS=0;PAIRED=1;PAIREDR=0.666667;PAO=0;PQA=0;PQR=0;PRO=0;QA=888;QR=672;RO=18;RPL=0;RPP=52.9542;RPPR=42.0968;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:148:9,13,10,10,13,9,7,23,22,13:9:336:13,10,10,13,9,7,23,22,13:504,386,377,504,341,257,878,803,506:-106.599,-67.9002,-91.4961,-77.645,-63.7465,-102.144,-80.9867,-67.0883,-76.833,-105.485,-67.8995,-54.001,-63.7458,-67.0876,-91.4954,-81.3526,-67.4541,-77.1989,-80.5406,-67.4534,-106.152,-88.3009,-74.4026,-84.1473,-87.489,-74.4019,-87.8549,-113.703,-37.8576,-23.959,-33.7039,-37.0459,-23.9583,-37.4115,-44.36,-58.4433,-43.9409,-30.0424,-39.7872,-43.1292,-30.0417,-43.4948,-50.4433,0,-64.8274,-67.7201,-53.8216,-63.5664,-66.9082,-53.8209,-67.274,-74.2225,-23.7789,-29.8623,-91.316 0|0:115:0,2,10,9,5,13,13,28,4,4:0:0:2,10,9,5,13,13,28,4,4:79,383,342,182,484,501,1015,134,151:-123.222,-116.721,-116.119,-91.8166,-85.3151,-88.8063,-97.5912,-91.0898,-66.1855,-94.8819,-108.548,-102.046,-77.1418,-82.9165,-107.042,-83.6985,-77.197,-52.2926,-58.0676,-69.0238,-79.7851,-82.0805,-75.579,-50.6744,-56.4494,-67.4057,-42.5564,-78.1672,-41.1421,-34.6406,-9.73625,-15.5119,-26.4676,-1.61866,0,-32.7132,-112.374,-105.873,-80.9685,-86.7432,-97.6994,-72.8505,-71.2325,-30.2945,-111.17,-110.847,-104.346,-79.4412,-85.2159,-96.1722,-71.3231,-69.7051,-28.7668,-99.9988,-109.643 0|0:141:9,8,13,7,6,0,14,33,9,6:9:336:8,13,7,6,0,14,33,9,6:305,495,261,237,0,533,1278,336,239:-117.309,-94.9988,-120.099,-79.7825,-82.2709,-103.378,-100.37,-102.859,-87.6425,-125.771,-100.515,-103.004,-87.7872,-108.375,-126.217,-120.019,-122.507,-107.291,-127.879,-128.024,-147.527,-76.2993,-78.7877,-63.5714,-84.1593,-84.304,-103.808,-99.5934,-16.2114,-18.6997,-3.48331,-24.0718,-24.2159,-43.72,0,-33.786,-92.7863,-95.2748,-80.0585,-100.646,-100.791,-120.295,-76.5754,-16.4875,-117.585,-100.336,-102.825,-87.6084,-108.196,-108.341,-127.845,-84.1253,-24.0372,-100.612,-126.039 dDocent_Contig_1011 72 . A T 209.154 . AB=0.384615;ABP=6.01695;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=75;DPB=75;DPRA=1.06122;EPP=24.725;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=336;QR=2059;RO=65;RPL=10;RPP=24.725;RPPR=144.156;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:884:0:0:0,-8.42884,-79.8557 0/0:21:21,0:21:654:0:0:0,-6.32163,-59.1557 0/1:26:16,10:16:521:10:336:-22.7393,0,-39.3762 dDocent_Contig_1012 16 . G C 18991.6 . AB=0.576159;ABP=41.047;AC=3;AF=0.5;AN=6;AO=435;CIGAR=1M1I2M2X;DP=755;DPB=842.6;DPRA=0;EPP=947.601;EPPR=146.327;GTI=0;LEN=1;MEANALT=3.66667;MQM=59.0713;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.988506;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=16952;QR=2546;RO=66;RPL=0;RPP=947.601;RPPR=146.327;RPR=435;RUN=1;SAF=435;SAP=947.601;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:384:26,213,143:26:998:213,143:8298,5512:-1032.91,-366.52,-384.32,-592.3,0,-631.173 1|0:159:8,86,59:8:309:86,59:3292,2284:-423.539,-158.217,-157.707,-242.344,0,-249.961 1|0:212:32,136,41:32:1239:136,41:5362,1524:-448.229,-18.0346,-78.8868,-338.028,0,-427.466 dDocent_Contig_1015 1 . N G 2453.21 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=77;CIGAR=1X;DP=77;DPB=77;DPRA=0;EPP=76.3609;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=59.2987;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.168831;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2715;QR=0;RO=0;RPL=0;RPP=170.214;RPPR=0;RPR=77;RUN=1;SAF=13;SAP=76.3609;SAR=64;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:18:0,18:0:0:18:637:-57.6491,-5.41854,0 1/1:17:0,17:0:0:17:596:-53.9654,-5.11751,0 1/1:42:0,42:0:0:42:1482:-133.104,-12.6433,0 dDocent_Contig_1022 15 . A C 109.962 . AB=0.214286;ABP=22.8638;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=86;DPB=86;DPRA=0.965517;EPP=16.0391;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=3159;RO=80;RPL=0;RPP=16.0391;RPPR=176.728;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1310:0:0:0,-9.93399,-118.169 0/1:28:22,6:22:862:6:232:-12.8201,0,-69.4631 0/0:25:25,0:25:987:0:0:0,-7.52575,-89.1259 dDocent_Contig_1023 24 . A G 128.905 . AB=0.161765;ABP=70.5814;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=109;DPB=109;DPRA=0;EPP=31.2394;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=473;QR=3807;RO=96;RPL=0;RPP=31.2394;RPPR=211.472;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:39,2:39:1540:2:71:0,-5.6028,-132.109 0/1:29:24,5:24:947:5:175:-7.36219,0,-76.8054 0/1:39:33,6:33:1320:6:227:-9.0512,0,-107.325 dDocent_Contig_1024 98 . N A 1436.67 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=47;CIGAR=1X;DP=47;DPB=47;DPRA=0;EPP=105.07;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1579;QR=0;RO=0;RPL=47;RPP=105.07;RPPR=0;RPR=0;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:22:0,22:0:0:22:757:-68.4495,-6.62266,0 1/1:9:0,9:0:0:9:301:-27.4161,-2.70927,0 1/1:16:0,16:0:0:16:521:-47.1997,-4.81648,0 dDocent_Contig_1025 98 . N C 1856.32 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=67;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=148.499;EPPR=0;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.9701;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2047;QR=0;RO=0;RPL=67;RPP=148.499;RPPR=0;RPR=0;RUN=1;SAF=67;SAP=148.499;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:17:0,17:0:0:17:556:-50.3532,-5.11751,0 1/1:27:0,27:0:0:27:763:-68.9367,-8.12781,0 1/1:24:0,23:0:0:23:728:-65.7402,-6.92369,0 dDocent_Contig_1026 83 . A G 2125.9 . AB=0.617647;ABP=19.3602;AC=3;AF=0.5;AN=6;AO=84;CIGAR=1X;DP=136;DPB=136;DPRA=0;EPP=185.414;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2868;QR=1745;RO=52;RPL=84;RPP=185.414;RPPR=115.927;RPR=0;RUN=1;SAF=84;SAP=185.414;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:20,14:20:681:14:480:-33.2923,0,-51.3743 0/1:58:23,35:23:750:35:1203:-91.1153,0,-50.3442 0/1:44:9,35:9:314:35:1185:-93.7057,0,-15.3526 dDocent_Contig_1027 153 . T C 119.338 . AB=0.21875;ABP=24.9965;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X2M1X;DP=42;DPB=42;DPRA=1.6;EPP=18.2106;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=271;QR=1273;RO=34;RPL=0;RPP=18.2106;RPPR=76.8404;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=76.8404;SRR=34;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:10:10,0:10:368:0:0:0,-3.0103,-33.4585 0|1:19:14,4:14:543:4:152:-8.27466,0,-43.4421 0|1:13:10,3:10:362:3:119:-7.182,0,-29.0013 dDocent_Contig_1028 25 . G A 985.905 . AB=0.236842;ABP=117.298;AC=3;AF=0.5;AN=6;AO=45;CIGAR=1X;DP=190;DPB=190;DPRA=0;EPP=100.727;EPPR=317.874;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1781;QR=5677;RO=145;RPL=0;RPP=100.727;RPPR=317.874;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=145;SRP=317.874;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:74:51,23:51:1965:23:910:-59.9353,0,-154.785 0/1:52:40,12:40:1579:12:478:-27.7183,0,-126.708 0/1:64:54,10:54:2133:10:393:-16.4598,0,-172.892 dDocent_Contig_1029 76 . G T 109.092 . AB=0.157895;ABP=60.9543;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=125;DPB=125;DPRA=0;EPP=31.2394;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=476;QR=4072;RO=112;RPL=13;RPP=31.2394;RPPR=246.215;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:48,9:48:1724:9:325:-12.432,0,-138.268 0/0:50:47,3:47:1758:3:112:0,-4.6056,-148.032 0/0:18:17,1:17:590:1:39:0,-1.52198,-49.5169 dDocent_Contig_1031 23 . G T 124.752 . AB=0.157895;ABP=60.9543;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=88;DPB=88;DPRA=0.919355;EPP=22.5536;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=360;QR=3145;RO=79;RPL=0;RPP=22.5536;RPPR=174.557;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1227:0:0:0,-9.33193,-110.702 0/1:37:32,5:32:1267:5:205:-7.6969,0,-103.156 0/1:20:16,4:16:651:4:155:-8.30119,0,-52.9023 dDocent_Contig_1033 107 . N A 93.0108 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=93;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:33:-3.29913,-0.30103,0 1/1:2:0,2:0:0:2:60:-5.69918,-0.60206,0 dDocent_Contig_1034 48 . G C 360.755 . AB=0.258621;ABP=32.3626;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1X;DP=122;DPB=122;DPRA=1.8125;EPP=35.5824;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=608;QR=4211;RO=107;RPL=0;RPP=35.5824;RPPR=235.358;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:43,15:43:1683:15:608:-37.5984,0,-134.238 0/0:25:25,0:25:984:0:0:0,-7.52575,-88.861 0/0:39:39,0:39:1544:0:0:0,-11.7402,-139.204 dDocent_Contig_1036 8 . A C 170.894 . AB=0.121622;ABP=187.057;AC=1;AF=0.166667;AN=6;AO=21;CIGAR=1X;DP=240;DPB=240;DPRA=3.94444;EPP=48.6112;EPPR=474.22;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=59.9908;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=816;QR=8256;RO=217;RPL=0;RPP=48.6112;RPPR=474.22;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=217;SRP=474.22;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:65:62,3:62:2350:3:117:0,-8.65657,-200.807 0/0:27:27,0:27:1009:0:0:0,-8.12781,-91.1211 0/1:148:128,18:128:4897:18:699:-18.9133,0,-396.433 dDocent_Contig_1037 98 . N T 66.4848 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_1038 7 . T A 112.124 . AB=0.194444;ABP=32.2045;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=109;DPB=109;DPRA=0.986301;EPP=18.2106;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=258;QR=3923;RO=102;RPL=0;RPP=18.2106;RPPR=224.5;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:29,7:29:1116:7:258:-12.7353,0,-89.9057 0/0:25:25,0:25:951:0:0:0,-7.52575,-85.9029 0/0:48:48,0:48:1856:0:0:0,-14.4494,-167.287 dDocent_Contig_1039 7 . T A 367.699 . AB=0.0507614;ABP=348.341;AC=0;AF=0;AN=6;AO=10;CIGAR=1X17M2D3M;DP=250;DPB=239.696;DPRA=0;EPP=24.725;EPPR=133.299;GTI=0;LEN=1;MEANALT=19;MQM=56.4;MQMR=60;NS=3;NUMALT=9;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=356;QR=2313;RO=60;RPL=0;RPP=24.725;RPPR=133.299;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:92:21,5,5,5,7,2,4,7,7,5:21:805:5,5,5,7,2,4,7,7,5:187,194,193,269,65,151,269,273,193:-16.1171,-7.12462,-71.6887,-6.49749,-57.253,-71.0618,-6.58701,-57.3424,-56.7155,-71.1513,-0.355194,-51.1108,-50.4838,-50.5733,-64.3175,-17.1964,-67.9513,-67.3244,-67.4139,-61.1822,-82.6631,-10.0721,-60.8274,-60.2005,-60.2899,-54.0583,-70.8988,-74.9372,-0.358381,-51.1139,-50.487,-50.5765,-44.3448,-61.1854,-54.0614,-64.3207,0,-50.7557,-50.1287,-50.2182,-43.9865,-60.8272,-53.7032,-43.9897,-63.9625,-6.58714,-57.3426,-56.7156,-56.8051,-50.5734,-67.414,-60.2901,-50.5766,-50.2184,-71.1514 0|0:53:22,0,0,3,1,5,1,2,3,0:22:850:0,0,3,1,5,1,2,3,0:0,0,111,40,197,38,74,120,0:-9.57969,-16.2023,-86.0239,-16.2023,-86.0239,-86.0239,-7.12173,-76.9442,-76.9442,-76.0411,-12.9061,-82.7283,-82.7283,-73.6485,-82.4273,0,-69.8252,-69.8252,-60.7453,-66.5295,-68.32,-13.0853,-82.9073,-82.9073,-73.8275,-79.6117,-66.7085,-82.6063,-10.1479,-79.97,-79.97,-70.8903,-76.6744,-63.7712,-76.8534,-79.368,-6.31324,-76.1371,-76.1371,-67.0572,-72.8414,-59.938,-73.0204,-70.0831,-75.234,-16.2023,-86.0239,-86.0239,-76.9442,-82.7283,-69.8252,-82.9073,-79.97,-76.1371,-86.0239 0|0:105:17,5,6,7,6,4,7,2,0,5:17:658:5,6,7,6,4,7,2,0,5:169,230,263,237,155,260,70,0,195:-16.4292,-8.12268,-60.6711,-2.66788,-43.2979,-54.9159,0,-40.63,-35.1756,-51.9469,-2.04199,-42.6721,-37.2177,-34.5498,-54.2902,-8.81949,-49.4494,-43.995,-41.3271,-43.3693,-61.6695,-0.289422,-40.9194,-35.465,-32.7971,-34.8392,-41.6165,-52.2363,-15.8528,-56.4824,-51.0281,-48.3602,-50.4024,-57.1796,-48.6496,-69.3045,-21.5467,-62.1763,-56.7221,-54.0542,-56.0963,-62.8736,-54.3435,-69.9066,-75.6005,-5.51598,-46.146,-40.6916,-38.0237,-40.0658,-46.8431,-38.3131,-53.8762,-59.5702,-58.065 dDocent_Contig_1040 55 . A G 70.5368 . AB=0.0689655;ABP=49.8093;AC=0;AF=0;AN=6;AO=2;CIGAR=1X3M1X3M4I2M1X;DP=88;DPB=88.8182;DPRA=0.983051;EPP=7.35324;EPPR=174.557;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=3079;RO=79;RPL=2;RPP=7.35324;RPPR=174.557;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:29:22,2,5:22:866:2,5:79,185:-8.57656,-8.67663,-79.3833,0,-64.8539,-69.8512 0|0:34:32,0,1:32:1238:0,1:0,40:0,-9.63296,-111.461,-6.17809,-108.165,-107.864 0|0:25:25,0,0:25:975:0,0:0,0:0,-7.52575,-88.0559,-7.52575,-88.0559,-88.0559 dDocent_Contig_1041 10 . T A 3219.21 . AB=0.323404;ABP=130.323;AC=3;AF=0.5;AN=6;AO=152;CIGAR=1X3M;DP=470;DPB=470;DPRA=0;EPP=333.074;EPPR=565.422;GTI=0;LEN=1;MEANALT=2.66667;MQM=45.125;MQMR=51.4556;NS=3;NUMALT=2;ODDS=5.55112e-17;PAIRED=0.690789;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5186;QR=10279;RO=259;RPL=0;RPP=333.074;RPPR=565.422;RPR=152;RUN=1;SAF=152;SAP=333.074;SAR=0;SRF=259;SRP=565.422;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:144:87,14,42:87:3430:14,42:535,1599:-102.419,-96.7212,-353.481,0,-229.144,-248.398 0|1:149:81,14,52:81:3196:14,52:554,1733:-110.109,-102.322,-348.977,0,-218.739,-235.25 0|1:177:91,28,58:91:3653:28,58:1129,1854:-114.916,-88.9982,-334.67,0,-200.845,-236.694 dDocent_Contig_1042 1 . N G 77.8076 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 dDocent_Contig_1043 61 . A T 48.8153 . AB=0.16;ABP=28.1125;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=55;DPB=55;DPRA=1.66667;EPP=3.0103;EPPR=97.0649;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.921569;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=1994;RO=51;RPL=4;RPP=11.6962;RPPR=113.755;RPR=0;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=49;SRP=97.0649;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:856:0:0:0,-6.62266,-77.3562 0/1:25:21,4:21:818:4:154:-6.70543,0,-66.4097 0/0:8:8,0:8:320:0:0:0,-2.40824,-29.1679 dDocent_Contig_1044 12 . C G 643.067 . AB=0.40678;ABP=7.46366;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=59;DPB=59;DPRA=0;EPP=55.1256;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=961;QR=1390;RO=35;RPL=0;RPP=55.1256;RPPR=79.0118;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:10,5:10:395:5:200:-13.8639,0,-31.3878 0/1:25:13,12:13:513:12:479:-35.9332,0,-38.9844 0/1:19:12,7:12:482:7:282:-20.0325,0,-38.0096 dDocent_Contig_1045 145 . C T 1558.49 . AB=0.471545;ABP=3.87536;AC=3;AF=0.5;AN=6;AO=58;CIGAR=1X;DP=123;DPB=123;DPRA=0;EPP=128.956;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2194;QR=2434;RO=65;RPL=0;RPP=128.956;RPPR=144.156;RPR=58;RUN=1;SAF=0;SAP=128.956;SAR=58;SRF=0;SRP=144.156;SRR=65;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:12,26:12:470:26:1011:-79.8487,0,-31.2108 0/1:30:14,16:14:542:16:569:-42.4883,0,-40.0899 0/1:55:39,16:39:1422:16:614:-39.0349,0,-111.668 dDocent_Contig_1049 77 . G A 112.214 . AB=0.26087;ABP=14.4341;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=55;DPB=55;DPRA=1.4375;EPP=16.0391;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=218;QR=1830;RO=49;RPL=6;RPP=16.0391;RPPR=109.412;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:391:0:0:0,-3.31133,-35.5218 0/0:21:21,0:21:788:0:0:0,-6.32163,-71.2423 0/1:23:17,6:17:651:6:218:-13.0453,0,-52.0028 dDocent_Contig_1050 18 . T C 166.424 . AB=0.304348;ABP=10.6577;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=60;DPB=60;DPRA=1.24324;EPP=18.2106;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=1995;RO=53;RPL=0;RPP=18.2106;RPPR=118.098;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:829:0:0:0,-6.62266,-74.9247 0/1:23:16,7:16:582:7:278:-18.4663,0,-45.7747 0/0:15:15,0:15:584:0:0:0,-4.51545,-52.8998 dDocent_Contig_1051 8 . A C 1983.4 . AB=0.0564516;ABP=214.904;AC=0;AF=0;AN=6;AO=7;CIGAR=1X1M1X1M;DP=124;DPB=124;DPRA=0;EPP=18.2106;EPPR=89.8692;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.9;PAO=0;PQA=0;PQR=0;PRO=0;QA=267;QR=1537;RO=40;RPL=0;RPP=18.2106;RPPR=89.8692;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:31:12,0,3,16:12:455:0,3,16:0,116,640:-49.117,-52.7294,-90.0274,-43.2032,-80.4996,-79.5965,0,-37.2992,-27.7695,-32.4828 0|0:32:11,0,1,20:11:415:0,1,20:0,34,774:-60.307,-63.6184,-97.626,-60.8626,-94.8693,-94.5683,0,-34.0442,-31.2893,-28.0236 0|0:61:17,4,3,31:17:667:4,3,31:159,117,1211:-94.4384,-86.4634,-140.118,-89.9378,-131.704,-143.893,0,-41.7757,-45.2507,-45.5373 dDocent_Contig_1053 18 . T A 42.3971 . AB=0.121951;ABP=53.9075;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=133;DPB=133;DPRA=0.891304;EPP=13.8677;EPPR=278.787;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=5076;RO=127;RPL=0;RPP=13.8677;RPPR=278.787;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=127;SRP=278.787;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:36,5:36:1438:5:197:-5.76256,0,-117.335 0/0:35:35,0:35:1394:0:0:0,-10.536,-125.716 0/0:57:56,0:56:2244:0:0:0,-16.8577,-201.717 dDocent_Contig_1054 35 . A G 4002.18 . AB=0.818182;ABP=90.0666;AC=4;AF=0.666667;AN=6;AO=124;CIGAR=1X;DP=142;DPB=142;DPRA=0;EPP=272.273;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4809;QR=716;RO=18;RPL=0;RPP=272.273;RPPR=42.0968;RPR=124;RUN=1;SAF=124;SAP=272.273;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:63:7,56:7:279:56:2174:-176.888,0,-6.51626 1/1:43:0,43:0:0:43:1661:-149.732,-12.9443,0 0/1:36:11,25:11:437:25:974:-77.1211,0,-28.8457 dDocent_Contig_1056 191 . C T 133.808 . AB=0.25;ABP=16.0391;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=57;DPB=57;DPRA=1.45455;EPP=16.0391;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=1984;RO=51;RPL=6;RPP=16.0391;RPPR=113.755;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=113.755;SRR=51;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:967:0:0:0,-7.22472,-87.3285 0/1:24:18,6:18:678:6:245:-15.2048,0,-54.1131 0/0:9:9,0:9:339:0:0:0,-2.70927,-30.8554 dDocent_Contig_1057 9 . C A 154.367 . AB=0.139785;ABP=107.825;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=221;DPB=221;DPRA=1.45312;EPP=31.2394;EPPR=454.677;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=499;QR=8018;RO=208;RPL=0;RPP=31.2394;RPPR=454.677;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=208;SRP=454.677;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:47:47,0:47:1804:0:0:0,-14.1484,-162.613 0/1:93:80,13:80:3071:13:499:-17.2607,0,-248.552 0/0:81:81,0:81:3143:0:0:0,-24.3834,-283.017 dDocent_Contig_1059 16 . C T 1176.28 . AB=0.11976;ABP=212.733;AC=0;AF=0;AN=6;AO=20;CIGAR=2X;DP=167;DPB=167;DPRA=0;EPP=46.4397;EPPR=220.158;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=774;QR=3934;RO=100;RPL=0;RPP=46.4397;RPPR=220.158;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:43:26,4,13:26:1024:4,13:157,510:-34.113,-29.0276,-112.063,0,-71.3273,-80.3259 0|0:31:22,1,8:22:865:1,8:40,319:-19.6462,-22.9737,-93.8151,0,-67.8446,-68.7318 0|0:93:52,15,26:52:2045:15,26:577,1033:-69.3916,-37.6915,-201.361,0,-120.838,-160.367 dDocent_Contig_1060 16 . T A 1117.02 . AB=0.270115;ABP=82.8805;AC=3;AF=0.5;AN=6;AO=47;CIGAR=1X;DP=174;DPB=174;DPRA=0;EPP=105.07;EPPR=276.616;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1874;QR=5024;RO=126;RPL=0;RPP=105.07;RPPR=276.616;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=126;SRP=276.616;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:29,17:29:1159:17:664:-46.2383,0,-90.7419 0/1:74:63,10:63:2494:10:394:-13.489,0,-202.277 0/1:54:34,20:34:1371:20:816:-57.4979,0,-107.385 dDocent_Contig_1061 14 . T G 11508.2 . AB=0.609756;ABP=45.9101;AC=6;AF=1;AN=6;AO=250;CIGAR=1X3M;DP=410;DPB=409.25;DPRA=0;EPP=545.878;EPPR=26.8965;GTI=0;LEN=1;MEANALT=4.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.984;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9821;QR=425;RO=11;RPL=0;RPP=545.878;RPPR=26.8965;RPR=250;RUN=1;SAF=250;SAP=545.878;SAR=0;SRF=11;SRP=26.8965;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:152:0,1,41,99:0:0:1,41,99:38,1533,3910:-447.249,-444.133,-443.832,-321.724,-318.608,-309.382,-125.52,-122.403,0,-95.7178 1|1:125:6,7,46,64:6:230:7,46,64:259,1676,2491:-320.911,-301.53,-318.3,-185.83,-183.52,-190.859,-118.015,-115.706,0,-117.628 1|1:133:5,0,41,87:5:195:0,41,87:0,1521,3420:-388.188,-389.693,-405.721,-265.249,-281.276,-268.934,-108.405,-124.434,0,-98.2449 dDocent_Contig_1064 187 . G A 53.1606 . AB=0.148148;ABP=32.0437;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=81;DPB=81;DPRA=1.34091;EPP=13.8677;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=3002;RO=76;RPL=5;RPP=13.8677;RPPR=168.042;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=168.042;SRR=76;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:23,4:23:907:4:162:-6.83894,0,-73.8078 0/0:32:31,1:31:1203:1:40:0,-5.63728,-104.542 0/0:22:22,0:22:892:0:0:0,-6.62266,-80.5855 dDocent_Contig_1065 9 . T C 8058.51 . AB=0.644444;ABP=68.251;AC=6;AF=1;AN=6;AO=232;CIGAR=1X4M;DP=360;DPB=360;DPRA=0;EPP=498.143;EPPR=57.2971;GTI=0;LEN=1;MEANALT=4.66667;MQM=54.2672;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.926724;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8353;QR=984;RO=25;RPL=0;RPP=506.792;RPPR=57.2971;RPR=232;RUN=1;SAF=231;SAP=498.143;SAR=1;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:110:11,0,18,77:11:427:0,18,77:0,682,2729:-234.633,-237.945,-273.033,-184.499,-219.589,-214.17,-18.3458,-53.4428,0,-30.2634 1|1:115:5,6,27,70:5:198:6,27,70:234,1017,2499:-264.989,-251.36,-265.853,-185.396,-186.562,-193.569,-64.8403,-66.0116,0,-60.0734 1|1:135:9,6,30,85:9:359:6,30,85:237,1164,3125:-311.752,-298.711,-326.474,-223.698,-237.518,-244.236,-61.19,-75.0172,0,-65.1756 dDocent_Contig_1066 13 . T C 7079.75 . AB=0.824405;ABP=310.144;AC=3;AF=0.5;AN=6;AO=277;CIGAR=1X;DP=336;DPB=336;DPRA=0;EPP=604.508;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=42.9134;MQMR=54.5763;NS=3;NUMALT=1;ODDS=0;PAIRED=0.949458;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11098;QR=2317;RO=59;RPL=0;RPP=604.508;RPPR=131.127;RPR=277;RUN=1;SAF=277;SAP=604.508;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:113:20,93:20:790:93:3722:-246.385,0,-33.9693 0/1:76:16,60:16:618:60:2403:-153.065,0,-27.2062 0/1:147:23,124:23:909:124:4973:-314.048,0,-36.0281 dDocent_Contig_1067 12 . G A 5396.29 . AB=0.621053;ABP=39.2853;AC=3;AF=0.5;AN=6;AO=177;CIGAR=1X;DP=285;DPB=285;DPRA=0;EPP=387.361;EPPR=237.529;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7005;QR=4204;RO=108;RPL=0;RPP=387.361;RPPR=237.529;RPR=177;RUN=1;SAF=177;SAP=387.361;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:79:22,57:22:871:57:2231:-177.187,0,-54.9201 0/1:87:43,44:43:1683:44:1720:-128.845,0,-125.513 0/1:119:43,76:43:1650:76:3054:-239.119,0,-112.904 dDocent_Contig_1068 33 . C A 1280.59 . AB=0.433628;ABP=7.33403;AC=3;AF=0.5;AN=6;AO=49;CIGAR=1X;DP=113;DPB=113;DPRA=0;EPP=109.412;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1851;QR=2449;RO=64;RPL=0;RPP=109.412;RPPR=141.985;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:14,16:14:531:16:620:-47.108,0,-39.1016 0/1:36:12,24:12:453:24:879:-68.5809,0,-30.28 0/1:47:38,9:38:1465:9:352:-17.8929,0,-117.971 dDocent_Contig_1069 9 . C A 30179.4 . AB=0.54281;ABP=32.0141;AC=3;AF=0.5;AN=6;AO=989;CIGAR=2X3M;DP=1822;DPB=1822;DPRA=0;EPP=2150.6;EPPR=810.798;GTI=0;LEN=1;MEANALT=12.3333;MQM=59.9909;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0.988878;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=38180;QR=14593;RO=372;RPL=0;RPP=2150.6;RPPR=810.798;RPR=989;RUN=1;SAF=989;SAP=2150.6;SAR=0;SRF=372;SRP=810.798;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:571:89,37,51,319,41:89:3490:37,51,319,41:1457,2000,12302,1608:-983.402,-917.55,-1193.42,-846.711,-1041.08,-1118.37,0,-194.379,-123.532,-190.988,-877.961,-1072.33,-1001.49,-154.782,-1152.63 0|1:676:148,45,48,371,22:148:5787:45,48,371,22:1729,1888,14390,847:-1137.72,-1071.57,-1533.81,-1027.63,-1392.72,-1488.97,0,-365.107,-321.16,-364.114,-1112.72,-1477.81,-1433.88,-406.251,-1581.89 0|1:575:135,38,55,299,29:135:5316:38,55,299,29:1523,2162,11488,1138:-902.349,-842.814,-1268.71,-767.33,-1104.49,-1188.11,0,-337.17,-261.682,-347.332,-849.394,-1186.55,-1111.07,-343.746,-1278 dDocent_Contig_1070 27 . T C 398.102 . AB=0.372093;ABP=9.12072;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=43;DPB=43;DPRA=0;EPP=37.7539;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=635;QR=1071;RO=27;RPL=0;RPP=37.7539;RPPR=61.6401;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:14,4:14:550:4:160:-9.36489,0,-44.4225 0/1:12:7,5:7:275:5:194:-14.2196,0,-21.5061 0/1:13:6,7:6:246:7:281:-21.7486,0,-18.6067 dDocent_Contig_1071 67 . G A 361.648 . AB=0.394737;ABP=6.66752;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=67;DPB=67;DPRA=0;EPP=37.7539;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=599;QR=1951;RO=51;RPL=16;RPP=37.7539;RPPR=113.755;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:28,1:28:1056:1:39:0,-4.83331,-91.4462 0/1:18:15,3:15:590:3:121:-5.86166,0,-48.019 0/1:20:8,12:8:305:12:439:-33.826,0,-21.7894 dDocent_Contig_1072 71 . C T 55.4175 . AB=0.333333;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=41;DPB=41;DPRA=0.5625;EPP=9.52472;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=108;QR=1387;RO=38;RPL=3;RPP=9.52472;RPPR=85.5263;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:686:0:0:0,-5.71957,-62.0619 0/0:13:13,0:13:493:0:0:0,-3.91339,-44.7158 0/1:9:6,3:6:208:3:108:-7.36566,0,-16.3495 dDocent_Contig_1074 32 . T C 1210.85 . AB=0.321918;ABP=43.2272;AC=3;AF=0.5;AN=6;AO=47;CIGAR=1X;DP=146;DPB=146;DPRA=0;EPP=105.07;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1884;QR=3889;RO=99;RPL=0;RPP=105.07;RPPR=217.986;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:35,11:35:1373:11:444:-26.4684,0,-109.983 0/1:51:41,10:41:1610:10:390:-20.1002,0,-129.792 0/1:49:23,26:23:906:26:1050:-80.0391,0,-67.0913 dDocent_Contig_1075 116 . C T 1371.69 . AB=0.685185;ABP=19.0953;AC=4;AF=0.666667;AN=6;AO=50;CIGAR=1X;DP=67;DPB=67;DPRA=0;EPP=111.584;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1733;QR=596;RO=17;RPL=0;RPP=111.584;RPPR=39.9253;RPR=50;RUN=1;SAF=0;SAP=111.584;SAR=50;SRF=0;SRP=39.9253;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:9,18:9:315:18:602:-46.3664,0,-20.5607 0/1:27:8,19:8:281:19:667:-52.2272,0,-17.5027 1/1:13:0,13:0:0:13:464:-42.0978,-3.91339,0 dDocent_Contig_1076 33 . A G 52.7573 . AB=0.16;ABP=28.1125;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=68;DPB=68;DPRA=1.16279;EPP=11.6962;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=2488;RO=64;RPL=0;RPP=11.6962;RPPR=141.985;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:21,4:21:826:4:155:-6.79861,0,-67.1306 0/0:15:15,0:15:558:0:0:0,-4.51545,-50.5479 0/0:28:28,0:28:1104:0:0:0,-8.42884,-99.6385 dDocent_Contig_1077 9 . C A 127.457 . AB=0.24;ABP=17.6895;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X3M1X;DP=69;DPB=69;DPRA=1.13636;EPP=16.0391;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=2469;RO=63;RPL=0;RPP=16.0391;RPPR=139.813;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:25:19,6:19:747:6:238:-14.2686,0,-60.0327 0|0:19:19,0:19:733:0:0:0,-5.71957,-66.2967 0|0:25:25,0:25:989:0:0:0,-7.52575,-89.3154 dDocent_Contig_1078 107 . N T 95.1714 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=102;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:102:-9.5166,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_1080 82 . G A 150.301 . AB=0.322581;ABP=11.486;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=53;DPB=53;DPRA=0.704545;EPP=24.725;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=55.8095;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.880952;PAO=0;PQA=0;PQR=0;PRO=0;QA=303;QR=1134;RO=42;RPL=10;RPP=24.725;RPPR=94.2121;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:21,0:21:601:0:0:0,-6.32163,-50.0006 0/1:9:7,2:7:167:2:57:-2.70495,0,-12.5577 0/1:22:14,8:14:366:8:246:-15.8203,0,-26.5739 dDocent_Contig_1081 22 . A C 31.7385 . AB=0.102564;ABP=110.025;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=186;DPB=186;DPRA=1.44444;EPP=20.3821;EPPR=385.189;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=312;QR=6783;RO=176;RPL=0;RPP=20.3821;RPPR=385.189;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=176;SRP=385.189;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:44:44,0:44:1670:0:0:0,-13.2453,-150.549 0/1:78:69,8:69:2668:8:312:-4.99747,0,-216.853 0/0:64:63,0:63:2445:0:0:0,-18.9649,-219.832 dDocent_Contig_1082 47 . C A 49.9668 . AB=0.12069;ABP=75.4926;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=89;DPB=89;DPRA=0.935484;EPP=18.2106;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=280;QR=3224;RO=82;RPL=0;RPP=18.2106;RPPR=181.071;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:39,5:39:1538:5:199:-5.04324,0,-125.424 0/0:31:31,0:31:1217:0:0:0,-9.33193,-109.8 0/1:14:12,2:12:469:2:81:-3.47131,0,-38.3437 dDocent_Contig_1083 145 . T C 338.344 . 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AB=0.666053;ABP=393.157;AC=6;AF=1;AN=6;AO=1085;CIGAR=1X2M;DP=1629;DPB=1629;DPRA=0;EPP=2359.06;EPPR=65.983;GTI=0;LEN=1;MEANALT=9;MQM=29.6682;MQMR=34.5517;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=31714;QR=1131;RO=29;RPL=0;RPP=2359.06;RPPR=65.983;RPR=1085;RUN=1;SAF=1085;SAP=2359.06;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:355:14,35,45,240:14:545:35,45,240:1342,1229,7435:-575.716,-496.72,-524.124,-494.648,-449.379,-519.041,-47.3208,-2.0492,0,-13.019 1|1:493:11,29,87,336:11:426:29,87,336:1119,2424,10400:-883.246,-820.302,-844.105,-716.079,-682.358,-722.423,-137.915,-104.196,0,-69.3073 1|1:781:4,93,149,509:4:160:93,149,509:3610,3734,13879:-1205.62,-1020.11,-995.762,-953.727,-770.656,-912.525,-249.446,-66.3622,0,-99.8723 dDocent_Contig_1103 1 . N T 256.715 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=18;CIGAR=1X;DP=18;DPB=18;DPRA=0;EPP=42.0968;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=15.8333;MQMR=0;NS=1;NUMALT=1;ODDS=17.0818;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=605;QR=0;RO=0;RPL=0;RPP=42.0968;RPPR=0;RPR=18;RUN=1;SAF=0;SAP=42.0968;SAR=18;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:18:0,18:0:0:18:605:-25.6715,-5.41854,0 dDocent_Contig_1104 36 . C T 88.2466 . AB=0.333333;ABP=3.73412;AC=4;AF=1;AN=4;AO=1;CIGAR=2X;DP=6;DPB=6;DPRA=1;EPP=5.18177;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=10;MQMR=0;NS=2;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=40;QR=0;RO=0;RPL=0;RPP=5.18177;RPPR=0;RPR=1;RUN=1;SAF=0;SAP=5.18177;SAR=1;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,3,0:0:0:3,0:103,0:-6.07245,-0.90309,0,-6.07245,-0.90309,-6.07245 .:.:.:.:.:.:.:. 1|1:3:0,2,1:0:0:2,1:63,40:-2.53712,-0.698579,-0.0965193,-1.94996,0,-1.64893 dDocent_Contig_1105 9 . G T 75.3132 . AB=0;ABP=0;AC=4;AF=0.666667;AN=6;AO=2;CIGAR=1X1M14I2M;DP=6;DPB=13.25;DPRA=1;EPP=7.35324;EPPR=7.35324;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=40;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0.5;PQA=0;PQR=0;PRO=0.5;QA=78;QR=77;RO=2;RPL=0;RPP=7.35324;RPPR=7.35324;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=2;SRP=7.35324;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:78:-6.92763,-0.60206,0 1|1:1:0,0:0:0:0:0:0,0,0 0|0:3:2,0:2:77:0:0:0,-0.60206,-6.51229 dDocent_Contig_1106 112 . N G 224.796 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=10;CIGAR=5X;DP=11;DPB=11;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1.33333;MQM=28.8;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=331;QR=0;RO=0;RPL=0;RPP=24.725;RPPR=0;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:1:0,1:0:0:1:33:-3.22103,-0.30103,0 1|1:4:0,3:0:0:3:103:-7.11786,-0.90309,0 1|1:6:0,6:0:0:6:195:-11.6626,-1.80618,0 dDocent_Contig_1108 9 . A C 744.912 . AB=0.115385;ABP=36.4176;AC=0;AF=0;AN=6;AO=3;CIGAR=1X2M1X3M;DP=81;DPB=81;DPRA=0;EPP=9.52472;EPPR=87.6977;GTI=0;LEN=1;MEANALT=4;MQM=44;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=1519;RO=39;RPL=0;RPP=9.52472;RPPR=87.6977;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:26:15,1,3,6:15:583:1,3,6:40,116,231:-14.4521,-15.6768,-63.2866,-9.73617,-54.3545,-56.7412,0,-44.6214,-38.6787,-46.1051 0|0:27:10,3,0,13:10:393:3,0,13:118,0,494:-37.4925,-30.7984,-62.2266,-40.5028,-63.1297,-72.8328,0,-22.6245,-32.3268,-28.4134 0|0:28:14,10,0,4:14:543:10,0,4:393,0,151:-28.0695,0,-41.6065,-32.2839,-44.6168,-76.8925,-19.9127,-32.2436,-64.5188,-63.3147 dDocent_Contig_1109 61 . C A 59.312 . AB=0.16129;ABP=33.9012;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=53;DPB=53;DPRA=0.704545;EPP=13.8677;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=1897;RO=48;RPL=5;RPP=13.8677;RPPR=107.241;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:12,2:12:460:2:81:-3.47131,0,-37.5277 0/1:17:14,3:14:561:3:119:-5.97788,0,-45.716 0/0:22:22,0:22:876:0:0:0,-6.62266,-79.1472 dDocent_Contig_1110 110 . C G 36.8815 . AB=0.140351;ABP=67.0497;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=75;DPB=75;DPRA=1.58333;EPP=20.3821;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=263;QR=2140;RO=67;RPL=0;RPP=20.3821;RPPR=148.499;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=148.499;SRR=67;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:19,3:19:603:3:97:-2.42838,0,-47.9491 0/0:18:18,0:18:605:0:0:0,-5.41854,-54.7689 0/1:35:30,5:30:932:5:166:-4.73144,0,-73.6284 dDocent_Contig_1111 98 . N G 128.454 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=57;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=0.5;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=139;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:139:-12.8452,-1.20412,0 ./.:.:.:.:.:.:.:. dDocent_Contig_1112 15 . A T 1317.84 . AB=0.178947;ABP=258.17;AC=3;AF=0.5;AN=6;AO=51;CIGAR=2M6I2M1X;DP=285;DPB=395.4;DPRA=0;EPP=113.755;EPPR=169.553;GTI=0;LEN=1;MEANALT=5.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=1.11022e-16;PAIRED=1;PAIREDR=0.945652;PAO=0;PQA=0;PQR=0;PRO=0;QA=2005;QR=3537;RO=92;RPL=0;RPP=113.755;RPPR=202.786;RPR=51;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=88;SRP=169.553;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:79:25,3,0,1:25:958:3,0,1:119,0,25:-2.27062,0,-77.717,-9.79637,-78.6201,-88.4164,-7.85018,-76.6731,-86.4693,-86.1683 0|1:100:30,23,5,21:30:1145:23,5,21:892,183,754:-64.2604,0,-87.0124,-58.338,-78.9825,-150.767,-11.8131,-32.4563,-90.7912,-99.4227 0|1:106:37,25,0,8:37:1434:25,0,8:994,0,295:-70.7049,0,-110.275,-81.843,-117.801,-199.643,-57.7245,-93.6813,-175.523,-173.115 dDocent_Contig_1113 9 . A G 107.195 . AB=0.263158;ABP=12.2676;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X5M;DP=67;DPB=66.6667;DPRA=0.791667;EPP=13.8677;EPPR=133.299;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=2354;RO=60;RPL=0;RPP=13.8677;RPPR=133.299;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:12,2,5:12:463:2,5:76,193:-12.2424,-9.6236,-47.0426,0,-31.7941,-36.521 0|0:15:15,0,0:15:587:0,0:0,0:0,-4.51545,-53.1711,-4.51545,-53.1711,-53.1711 0|0:33:33,0,0:33:1304:0,0:0,0:0,-9.93399,-117.635,-9.93399,-117.635,-117.635 dDocent_Contig_1114 94 . G C 1651.24 . AB=0.59633;ABP=11.7958;AC=3;AF=0.5;AN=6;AO=65;CIGAR=1X;DP=109;DPB=109;DPRA=0;EPP=144.156;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2244;QR=1510;RO=44;RPL=65;RPP=144.156;RPPR=98.5551;RPR=0;RUN=1;SAF=65;SAP=144.156;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:4,34:4:140:34:1181:-95.1584,0,-1.50579 0/1:29:20,9:20:687:9:314:-19.868,0,-53.4207 0/1:42:20,22:20:683:22:749:-55.0817,0,-49.1466 dDocent_Contig_1115 10 . C G 2619.19 . AB=0.422222;ABP=14.8328;AC=3;AF=0.5;AN=6;AO=95;CIGAR=1X;DP=225;DPB=225;DPRA=0;EPP=209.3;EPPR=285.302;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3715;QR=5159;RO=130;RPL=0;RPP=209.3;RPPR=285.302;RPR=95;RUN=1;SAF=95;SAP=209.3;SAR=0;SRF=130;SRP=285.302;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:87:65,22:65:2602:22:831:-48.9051,0,-208.112 0/1:70:29,41:29:1154:41:1630:-125.867,0,-83.0698 0/1:68:36,32:36:1403:32:1254:-92.6695,0,-106.054 dDocent_Contig_1116 189 . G T 71.4735 . AB=0.2;ABP=18.6449;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=67;DPB=67;DPRA=1.09524;EPP=13.8677;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=2484;RO=62;RPL=5;RPP=13.8677;RPPR=137.642;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=137.642;SRR=62;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:16,4:16:627:4:159:-8.67023,0,-50.7398 0/0:26:25,1:25:1001:1:41:0,-3.73221,-86.2918 0/0:21:21,0:21:856:0:0:0,-6.32163,-77.3489 dDocent_Contig_1117 45 . C G 237.651 . AB=0.25;ABP=26.8965;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=68;DPB=68;DPRA=0.916667;EPP=26.8965;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=442;QR=2281;RO=57;RPL=0;RPP=26.8965;RPPR=126.784;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:18,3:18:724:3:119:-4.77287,0,-59.1633 0/1:23:15,8:15:597:8:323:-22.5149,0,-47.1447 0/0:24:24,0:24:960:0:0:0,-7.22472,-86.6956 dDocent_Contig_1118 19 . A T 66.5413 . AB=0.333333;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=35;DPB=35;DPRA=0.692308;EPP=9.52472;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=1275;RO=32;RPL=0;RPP=9.52472;RPPR=72.4974;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:593:0:0:0,-4.51545,-53.7097 0/0:11:11,0:11:437:0:0:0,-3.31133,-39.6849 0/1:9:6,3:6:245:3:120:-8.47804,0,-19.7202 dDocent_Contig_1119 17 . T A 205.524 . AB=0.230769;ABP=35.7494;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=70;DPB=70;DPRA=0;EPP=31.2394;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=54.1538;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.846154;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=502;QR=2295;RO=57;RPL=0;RPP=31.2394;RPPR=126.784;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:18,8:18:710:8:319:-18.3152,0,-56.3944 0/0:18:17,1:17:691:1:36:0,-1.82026,-58.92 0/1:26:22,4:22:894:4:147:-5.7601,0,-72.9385 dDocent_Contig_1121 198 . G A 198.111 . AB=0.222222;ABP=39.2015;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=54;DPB=54;DPRA=0;EPP=29.068;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=450;QR=1586;RO=42;RPL=12;RPP=29.068;RPPR=94.2121;RPR=0;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=94.2121;SRR=42;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:12,3:12:445:3:108:-5.55944,0,-35.8758 0/1:24:20,4:20:763:4:150:-6.63995,0,-61.7737 0/1:15:10,5:10:378:5:192:-13.1346,0,-29.8563 dDocent_Contig_1122 88 . G A 154.54 . AB=0.236842;ABP=25.8679;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=157;DPB=157;DPRA=0;EPP=33.4109;EPPR=313.531;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=484;QR=4819;RO=143;RPL=14;RPP=33.4109;RPPR=313.531;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=143;SRP=313.531;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:29,9:29:1001:9:312:-16.9769,0,-78.9623 0/0:33:31,2:31:1048:2:68:0,-3.47606,-88.1637 0/0:86:83,3:83:2770:3:104:0,-16.1855,-239.845 dDocent_Contig_1123 16 . A C 79.3846 . AB=0.222222;ABP=21.1059;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=36;DPB=36;DPRA=1.5;EPP=16.0391;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=210;QR=1113;RO=30;RPL=0;RPP=16.0391;RPPR=68.1545;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:336:0:0:0,-2.70927,-30.593 0/1:12:9,3:9:332:3:105:-6.18168,0,-26.6177 0/1:15:12,3:12:445:3:105:-5.27957,0,-35.8795 dDocent_Contig_1124 65 . C A 78.8434 . AB=0.193548;ABP=28.2974;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=74;DPB=74;DPRA=0;EPP=20.3821;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=272;QR=2136;RO=66;RPL=8;RPP=20.3821;RPPR=146.327;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:43:41,2:41:1323:2:66:0,-6.67593,-113.086 0/1:11:10,1:10:324:1:35:-0.187299,0,-26.1645 0/1:20:15,5:15:489:5:171:-9.70602,0,-38.3015 dDocent_Contig_1125 98 . N T 544.093 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=19;CIGAR=1X;DP=19;DPB=19;DPRA=0;EPP=44.2683;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=589;QR=0;RO=0;RPL=19;RPP=44.2683;RPPR=0;RPR=0;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:130:-12.0221,-1.20412,0 1/1:10:0,10:0:0:10:305:-27.7465,-3.0103,0 1/1:5:0,5:0:0:5:154:-14.1635,-1.50515,0 dDocent_Contig_1126 139 . A T 70.6782 . AB=0.166667;ABP=31.9633;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=112;DPB=112;DPRA=0.731707;EPP=13.8677;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=4194;RO=107;RPL=0;RPP=13.8677;RPPR=235.358;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=235.358;SRR=107;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:45:45,0:45:1742:0:0:0,-13.5463,-156.996 0/1:30:25,5:25:979:5:195:-8.89173,0,-79.3795 0/0:37:37,0:37:1473:0:0:0,-11.1381,-132.818 dDocent_Contig_1127 98 . N C 234.147 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=0;RO=0;RPL=7;RPP=18.2106;RPPR=0;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:138:-12.7604,-1.20412,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 dDocent_Contig_1128 9 . T A 2803.35 . AB=0.662921;ABP=23.5295;AC=4;AF=0.666667;AN=6;AO=92;CIGAR=1X;DP=125;DPB=125;DPRA=0;EPP=202.786;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3523;QR=1212;RO=32;RPL=0;RPP=202.786;RPPR=72.4974;RPR=92;RUN=1;SAF=92;SAP=202.786;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:60:21,39:21:797:39:1499:-117.123,0,-53.9938 1/1:36:2,33:2:78:33:1253:-105.747,-3.3358,0 0/1:29:9,20:9:337:20:771:-60.9884,0,-21.9522 dDocent_Contig_1129 1 . N T 2349.75 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=135;CIGAR=1X;DP=135;DPB=135;DPRA=0;EPP=287.538;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=19.8;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=4631;QR=0;RO=0;RPL=0;RPP=296.159;RPPR=0;RPR=135;RUN=1;SAF=1;SAP=287.538;SAR=134;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:29:0,29:0:0:29:1008:-53.7261,-8.72987,0 1/1:28:0,28:0:0:28:945:-48.7167,-8.42884,0 1/1:78:0,78:0:0:78:2678:-131.93,-23.4803,0 dDocent_Contig_1130 16 . T C 7361.62 . AB=0.557823;ABP=20.0866;AC=5;AF=0.833333;AN=6;AO=328;CIGAR=1X4M;DP=588;DPB=588;DPRA=0;EPP=715.253;EPPR=309.188;GTI=0;LEN=1;MEANALT=4.33333;MQM=31.9878;MQMR=28.8227;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10165;QR=5422;RO=141;RPL=0;RPP=715.253;RPPR=309.188;RPR=328;RUN=1;SAF=328;SAP=715.253;SAR=0;SRF=141;SRP=309.188;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:109:17,25,63:17:661:25,63:951,1799:-160.739,-92.7718,-120.682,-37.7091,0,-54.1546 0|1:117:31,13,69:31:1187:13,69:488,2198:-152.471,-124.377,-197.3,0,-39.3778,-56.0353 1|1:362:93,66,196:93:3574:66,196:2539,6168:-428.475,-264.434,-431.16,-5.50619,0,-133.058 dDocent_Contig_1131 15 . T C 242.403 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=268;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:39:-3.64612,-0.30103,0 1/1:3:0,3:0:0:3:113:-9.96142,-0.90309,0 1/1:3:0,3:0:0:3:116:-10.1545,-0.90309,0 dDocent_Contig_1133 10 . C T 210.523 . AB=0.142857;ABP=212.402;AC=1;AF=0.166667;AN=6;AO=93;CIGAR=1X;DP=959;DPB=959;DPRA=0;EPP=107.825;EPPR=1440.63;GTI=0;LEN=1;MEANALT=2.33333;MQM=51.8065;MQMR=56.5563;NS=3;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=0.825784;PAO=0;PQA=0;PQR=0;PRO=0;QA=3615;QR=33787;RO=861;RPL=0;RPP=204.957;RPPR=1872.65;RPR=93;RUN=1;SAF=80;SAP=107.825;SAR=13;SRF=808;SRP=1440.63;SRR=53;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:189:160,27:160:6206:27:993:-22.5748,0,-478.222 0/0:241:216,22:216:8495:22:869:0,-0.574304,-673.324 0/0:529:485,44:485:19086:44:1753:0,-11.233,-1486.63 dDocent_Contig_1136 133 . A C 30.6643 . AB=0;ABP=0;AC=2;AF=0.5;AN=4;AO=4;CIGAR=1X3M1X;DP=5;DPB=5;DPRA=4;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=7;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=134;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:1:0,0:0:0:0:0:0,0,0 1|1:4:0,4:0:0:4:134:-2.58703,-1.20412,0 .:.:.:.:.:.:.:. dDocent_Contig_1137 157 . C A 3340.94 . AB=0.581633;ABP=8.68272;AC=4;AF=0.666667;AN=6;AO=113;CIGAR=1X;DP=157;DPB=157;DPRA=0;EPP=248.387;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4162;QR=1550;RO=44;RPL=0;RPP=248.387;RPPR=98.5551;RPR=113;RUN=1;SAF=0;SAP=248.387;SAR=113;SRF=0;SRP=98.5551;SRR=44;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:21,41:21:702:41:1501:-116.698,0,-44.8134 1/1:59:3,56:3:89:56:2043:-175.797,-9.4558,0 0/1:36:20,16:20:759:16:618:-45.122,0,-57.7938 dDocent_Contig_1138 8 . 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T G 278.01 . AB=0.173077;ABP=99.5573;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=1X;DP=133;DPB=133;DPRA=0;EPP=46.4397;EPPR=248.387;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=765;QR=4471;RO=113;RPL=0;RPP=46.4397;RPPR=248.387;RPR=20;RUN=1;SAF=0;SAP=46.4397;SAR=20;SRF=0;SRP=248.387;SRR=113;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:37,7:37:1454:7:262:-10.6909,0,-117.87 0/1:60:49,11:49:1951:11:426:-20.6329,0,-157.732 0/0:29:27,2:27:1066:2:77:0,-1.42073,-88.919 dDocent_Contig_1179 8 . A G 330.647 . AB=0.325581;ABP=37.0974;AC=2;AF=0.333333;AN=6;AO=42;CIGAR=3M1X;DP=129;DPB=131.5;DPRA=0;EPP=94.2121;EPPR=155.013;GTI=0;LEN=1;MEANALT=2.66667;MQM=18.2857;MQMR=45.5143;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0.671429;PAO=0;PQA=0;PQR=0;PRO=0;QA=1591;QR=2660;RO=70;RPL=0;RPP=94.2121;RPPR=155.013;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:39:22,5,2,0,10:22:840:5,2,0,10:193,72,0,375:-9.2826,0,-55.3255,-10.0448,-50.979,-66.2429,-15.9053,-56.8307,-66.8449,-72.6952,-3.88468,-44.7324,-54.7454,-60.5939,-57.5836 0|1:46:27,1,0,3,15:27:1024:1,0,3,15:38,0,117,569:-15.939,-20.9431,-85.9474,-24.0668,-86.2485,-89.3672,-14.4229,-76.6229,-79.7419,-78.8388,0,-62.0766,-65.1954,-55.5695,-60.6799 0|1:44:21,6,0,0,17:21:796:6,0,0,17:230,0,0,647:-13.3396,-0.726116,-50.5557,-19.6612,-52.3619,-71.2588,-19.6612,-52.3619,-71.2588,-71.2588,0,-32.6022,-51.4969,-51.4969,-46.3794 dDocent_Contig_1180 37 . C T 66.0557 . AB=0.217391;ABP=18.9659;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=77;DPB=77;DPRA=0.980769;EPP=16.0391;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=206;QR=2797;RO=71;RPL=0;RPP=16.0391;RPPR=157.185;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:27,1:27:1056:1:39:0,-4.53228,-91.4398 0/0:26:26,0:26:1037:0:0:0,-7.82678,-93.6204 0/1:23:18,5:18:704:5:167:-8.42948,0,-56.7584 dDocent_Contig_1182 12 . T C 47.7796 . AB=0.214286;ABP=12.937;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=69;DPB=69;DPRA=0.509091;EPP=9.52472;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=2627;RO=66;RPL=0;RPP=9.52472;RPPR=146.327;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:843:0:0:0,-6.32163,-76.1816 0/1:14:11,3:11:446:3:116:-6.60186,0,-36.2818 0/0:34:34,0:34:1338:0:0:0,-10.235,-120.686 dDocent_Contig_1183 57 . C T 240.185 . AB=0.314286;ABP=13.4954;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=42;DPB=42;DPRA=2.5;EPP=26.8965;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=415;QR=1190;RO=31;RPL=11;RPP=26.8965;RPPR=70.3259;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:9,4:9:333:4:162:-11.0536,0,-26.4013 0/1:22:15,7:15:575:7:253:-16.4879,0,-45.447 0/0:7:7,0:7:282:0:0:0,-2.10721,-25.7526 dDocent_Contig_1184 98 . N A 397.779 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=16;CIGAR=1X;DP=16;DPB=16;DPRA=0;EPP=37.7539;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=434;QR=0;RO=0;RPL=16;RPP=37.7539;RPPR=0;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:13:-1.29999,-0.30103,0 1/1:15:0,15:0:0:15:421:-38.1651,-4.51545,0 dDocent_Contig_1185 37 . T C 1589.83 . AB=0.75;ABP=39.9253;AC=3;AF=0.5;AN=6;AO=51;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=113.755;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2034;QR=639;RO=17;RPL=0;RPP=113.755;RPPR=39.9253;RPR=51;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:8,6:8:299:6:237:-17.4885,0,-23.049 0/1:32:3,29:3:115:29:1151:-94.2415,0,-1.09152 0/1:22:6,16:6:225:16:646:-51.8499,0,-13.9876 dDocent_Contig_1186 7 . G A 8011.84 . AB=0.0831683;ABP=2289.39;AC=1;AF=0.166667;AN=6;AO=126;CIGAR=1X1M;DP=1515;DPB=1515;DPRA=0;EPP=276.616;EPPR=1191.25;GTI=0;LEN=1;MEANALT=5.33333;MQM=59.8254;MQMR=58.3853;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.854412;PAO=0;PQA=0;PQR=0;PRO=0;QA=4741;QR=23326;RO=680;RPL=0;RPP=276.616;RPPR=1479.61;RPR=126;RUN=1;SAF=126;SAP=276.616;SAR=0;SRF=645;SRP=1191.25;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:612:255,140,150,54:255:9119:140,150,54:5309,5451,2039:-361.544,-2.98478,-689.322,0,-293.152,-683.319,-271.194,-564.353,-561.361,-983.418 0|0:394:193,80,94,20:193:6843:80,94,20:3050,3393,748:-218.763,-26.6422,-555.586,0,-302.798,-524.719,-215.624,-518.43,-491.778,-762.625 0|1:509:232,95,105,52:232:7364:95,105,52:3612,3595,1954:-226.4,0,-560.403,-4.50712,-297.258,-561.888,-136.162,-428.922,-433.418,-709.505 dDocent_Contig_1188 34 . G A 756.992 . AB=0.287037;ABP=45.5551;AC=2;AF=0.333333;AN=6;AO=34;CIGAR=1X;DP=153;DPB=153;DPRA=0;EPP=76.8404;EPPR=261.416;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1349;QR=4721;RO=119;RPL=0;RPP=76.8404;RPPR=261.416;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=119;SRP=261.416;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:60:45,15:45:1760:15:589:-35.2874,0,-140.565 0/0:45:42,3:42:1677:3:115:0,-2.82132,-140.435 0/1:48:32,16:32:1284:16:645:-43.9346,0,-101.374 dDocent_Contig_1189 107 . N C 1089.76 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=37;CIGAR=1X;DP=38;DPB=38;DPRA=0;EPP=83.3548;EPPR=0;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1199;QR=0;RO=0;RPL=0;RPP=83.3548;RPPR=0;RPR=37;RUN=1;SAF=0;SAP=83.3548;SAR=37;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:19:0,18:0:0:18:598:-53.7942,-5.41854,0 1/1:11:0,11:0:0:11:355:-32.2636,-3.31133,0 1/1:8:0,8:0:0:8:246:-22.4413,-2.40824,0 dDocent_Contig_1192 60 . T C 71.7133 . AB=0.146341;ABP=47.552;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=106;DPB=106;DPRA=1.39286;EPP=20.3821;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=312;QR=3861;RO=98;RPL=8;RPP=20.3821;RPPR=215.815;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:1085:0:0:0,-8.42884,-97.9407 0/0:37:35,2:35:1391:2:79:0,-3.64087,-117.95 0/1:41:35,6:35:1385:6:233:-8.99523,0,-112.569 dDocent_Contig_1193 1 . N G 167.672 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=58;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=171;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:66:-6.26577,-0.60206,0 1/1:3:0,3:0:0:3:71:-6.62406,-0.90309,0 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 dDocent_Contig_1195 10 . C G 79.5136 . AB=0.205882;ABP=28.557;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=100;DPB=100;DPRA=1.0625;EPP=20.3821;EPPR=202.786;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=259;QR=3539;RO=92;RPL=0;RPP=20.3821;RPPR=202.786;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:32,0:32:1262:0:0:0,-9.63296,-113.86 0/0:34:33,1:33:1282:1:40:0,-6.23934,-111.663 0/1:34:27,7:27:995:7:219:-9.77527,0,-79.6131 dDocent_Contig_1196 7 . T G 46184.7 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=1508;CIGAR=1X;DP=1524;DPB=1524;DPRA=0;EPP=3277.59;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.994032;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=51513;QR=181;RO=14;RPL=0;RPP=3277.59;RPPR=33.4109;RPR=1508;RUN=1;SAF=1508;SAP=3277.59;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:560:2,557:2:22:557:19583:-1759.69,-166.296,0 1/1:726:5,721:5:82:721:24845:-2227.53,-211.004,0 1/1:238:7,230:7:77:230:7085:-630.645,-64.5191,0 dDocent_Contig_1197 15 . A C 184.569 . AB=0.152174;ABP=99.688;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=92;DPB=92;DPRA=0;EPP=33.4109;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.974359;PAO=0;PQA=0;PQR=0;PRO=0;QA=555;QR=3029;RO=78;RPL=0;RPP=33.4109;RPPR=172.385;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:16,4:16:614:4:157:-8.48729,0,-49.5689 0/1:51:43,8:43:1689:8:316:-13.4528,0,-136.893 0/1:21:19,2:19:726:2:82:-1.45805,0,-59.3292 dDocent_Contig_1199 136 . C T 36.2437 . AB=0.133333;ABP=55.5599;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=122;DPB=122;DPRA=0.797872;EPP=22.5536;EPPR=248.387;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=288;QR=3744;RO=113;RPL=0;RPP=22.5536;RPPR=248.387;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=248.387;SRR=113;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:39,6:39:1288:6:204:-5.14705,0,-102.662 0/0:30:27,3:27:909:3:84:0,-1.19217,-74.2782 0/0:47:47,0:47:1547:0:0:0,-14.1484,-139.506 dDocent_Contig_1200 43 . A G 1555.8 . AB=0.78125;ABP=46.9826;AC=3;AF=0.5;AN=6;AO=50;CIGAR=1X;DP=64;DPB=64;DPRA=0;EPP=111.584;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1993;QR=562;RO=14;RPL=0;RPP=111.584;RPPR=33.4109;RPR=50;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:2,11:2:77:11:443:-36.3129,0,-3.39544 0/1:34:7,27:7:282:27:1059:-85.3605,0,-15.5179 0/1:17:5,12:5:203:12:491:-39.4234,0,-13.5355 dDocent_Contig_1202 98 . N T 157.269 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=2X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=8.07091;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=171;QR=0;RO=0;RPL=5;RPP=13.8677;RPPR=0;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:5:0,5:0:0:5:171:-15.7267,-1.50515,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_1204 10 . A G 77.2349 . AB=0.142857;ABP=57.2971;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=125;DPB=125;DPRA=1.28947;EPP=18.2106;EPPR=259.244;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=266;QR=4485;RO=118;RPL=0;RPP=18.2106;RPPR=259.244;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=118;SRP=259.244;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:43:43,0:43:1652:0:0:0,-12.9443,-148.922 0/1:49:42,7:42:1627:7:266:-9.5474,0,-131.928 0/0:33:33,0:33:1206:0:0:0,-9.93399,-108.813 dDocent_Contig_1206 7 . G A 51.7309 . AB=0.214286;ABP=12.937;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=38;DPB=38;DPRA=1.16667;EPP=9.52472;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=1142;RO=35;RPL=0;RPP=9.52472;RPPR=79.0118;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:11,3:11:383:3:117:-6.69596,0,-30.5804 0/0:9:9,0:9:314:0:0:0,-2.70927,-28.5917 0/0:15:15,0:15:445:0:0:0,-4.51545,-40.3282 dDocent_Contig_1207 7 . G A 1663.11 . AB=0.180633;ABP=478.749;AC=3;AF=0.5;AN=6;AO=97;CIGAR=1X;DP=537;DPB=537;DPRA=0;EPP=213.643;EPPR=941.106;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=59.9977;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.995413;PAO=0;PQA=0;PQR=0;PRO=0;QA=3685;QR=14969;RO=436;RPL=0;RPP=213.643;RPPR=949.772;RPR=97;RUN=1;SAF=97;SAP=213.643;SAR=0;SRF=435;SRP=941.106;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:173:140,33:140:5054:33:1246:-60.3557,0,-402.847 0/1:212:182,29:182:6411:29:1103:-35.9371,0,-513.36 0/1:152:114,35:114:3504:35:1336:-75.541,0,-270.543 dDocent_Contig_1210 9 . T G 15959 . AB=0.364796;ABP=127.493;AC=6;AF=1;AN=6;AO=286;CIGAR=1X3M;DP=784;DPB=784;DPRA=0;EPP=624.051;EPPR=215.815;GTI=0;LEN=1;MEANALT=5;MQM=59.9441;MQMR=59.6327;NS=3;NUMALT=3;ODDS=0;PAIRED=0.986014;PAIREDR=0.969388;PAO=0;PQA=0;PQR=0;PRO=0;QA=9914;QR=3523;RO=98;RPL=0;RPP=624.051;RPPR=215.815;RPR=286;RUN=1;SAF=286;SAP=624.051;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:233:12,147,9,61:12:432:147,9,61:5452,338,2164:-583.207,-140.994,-131.986,-559.13,-148.547,-591.663,-410.577,0,-418.13,-427.456 1|1:240:36,98,12,93:36:1306:98,12,93:3689,446,3284:-452.434,-160.998,-237.885,-426.771,-230.885,-529.545,-195.888,0,-265.772,-274.276 1|1:311:50,124,4,132:50:1785:124,4,132:4466,137,4466:-565.78,-216.475,-324.653,-569.712,-350.86,-714.009,-218.851,0,-353.231,-324.614 dDocent_Contig_1212 205 . G A 917.694 . AB=0.603448;ABP=8.40154;AC=3;AF=0.5;AN=6;AO=35;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=79.0118;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1248;QR=804;RO=23;RPL=35;RPP=79.0118;RPPR=52.9542;RPR=0;RUN=1;SAF=0;SAP=79.0118;SAR=35;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:12,14:12:410:14:487:-36.3335,0,-29.4013 0/1:9:1,8:1:33:8:284:-23.194,0,-0.589865 0/1:23:10,13:10:361:13:477:-36.3491,0,-25.9099 dDocent_Contig_1213 16 . A G 147.132 . AB=0.461538;ABP=3.17734;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=79;DPB=79;DPRA=0.393939;EPP=16.0391;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=220;QR=2876;RO=73;RPL=0;RPP=16.0391;RPPR=161.528;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:7,6:7:278:6:220:-16.2361,0,-21.4768 0/0:22:22,0:22:854:0:0:0,-6.62266,-77.1683 0/0:44:44,0:44:1744:0:0:0,-13.2453,-157.174 dDocent_Contig_1214 48 . T A 62.2913 . AB=0.147059;ABP=39.7976;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=90;DPB=90;DPRA=1.21429;EPP=13.8677;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=3365;RO=85;RPL=0;RPP=13.8677;RPPR=187.585;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:35:35,0:35:1405:0:0:0,-10.536,-126.705 0/1:34:29,5:29:1115:5:199:-8.05304,0,-90.3954 0/0:21:21,0:21:845:0:0:0,-6.32163,-76.3647 dDocent_Contig_1215 18 . G T 67.5577 . AB=0.190476;ABP=20.4855;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=61;DPB=61;DPRA=1.05;EPP=11.6962;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=2263;RO=57;RPL=0;RPP=11.6962;RPPR=126.784;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:17,4:17:676:4:158:-8.27864,0,-54.8487 0/0:24:24,0:24:951:0:0:0,-7.22472,-85.8922 0/0:16:16,0:16:636:0:0:0,-4.81648,-57.5706 dDocent_Contig_1216 15 . A G 461.004 . AB=0.395349;ABP=7.10075;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=51;DPB=51;DPRA=2.6875;EPP=39.9253;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=687;QR=1359;RO=34;RPL=0;RPP=39.9253;RPPR=76.8404;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:16,14:16:635:14:564:-42.0719,0,-48.4519 0/0:8:8,0:8:324:0:0:0,-2.40824,-29.5294 0/1:13:10,3:10:400:3:123:-7.5514,0,-32.4434 dDocent_Contig_1217 166 . N G 74.9833 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:79:-7.49724,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_1219 75 . A G 5190.66 . AB=0.199468;ABP=1182.91;AC=3;AF=0.5;AN=6;AO=300;CIGAR=1X;DP=1504;DPB=1504;DPRA=0;EPP=21.1059;EPPR=15.7573;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.0233333;PAIREDR=0.0141431;PAO=0;PQA=0;PQR=0;PRO=0;QA=10853;QR=43629;RO=1202;RPL=300;RPP=654.452;RPPR=2613.12;RPR=0;RUN=1;SAF=175;SAP=21.1059;SAR=125;SRF=643;SRP=15.7573;SRR=559;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:605:476,128:476:17040:128:4580:-230.385,0,-1351.03 0/1:447:369,77:369:13395:77:2719:-110.304,0,-1070.41 0/1:452:357,95:357:13194:95:3554:-183.901,0,-1050.82 dDocent_Contig_1220 160 . G A 173.03 . AB=0.333333;ABP=8.80089;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=113;DPB=113;DPRA=0.539326;EPP=20.3821;EPPR=231.015;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=289;QR=4125;RO=105;RPL=8;RPP=20.3821;RPPR=231.015;RPR=0;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=231.015;SRR=105;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:46:46,0:46:1799:0:0:0,-13.8474,-162.124 0/1:24:16,8:16:605:8:289:-19.1269,0,-47.5442 0/0:43:43,0:43:1721:0:0:0,-12.9443,-155.105 dDocent_Contig_1221 47 . T G 79.1623 . AB=0.172414;ABP=30.0414;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=171;DPB=171;DPRA=0.6875;EPP=10.7656;EPPR=350.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=248;QR=5871;RO=164;RPL=6;RPP=10.7656;RPPR=350.499;RPR=1;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=164;SRP=359.132;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:72:72,0:72:2548:0:0:0,-21.6742,-229.534 0/1:29:24,5:24:875:5:201:-9.74014,0,-70.3309 0/0:70:68,2:68:2448:2:47:0,-16.6112,-216.088 dDocent_Contig_1222 12 . C T 503.475 . AB=0.428571;ABP=3.32051;AC=5;AF=0.833333;AN=6;AO=3;CIGAR=1X8M2X;DP=22;DPB=22;DPRA=7;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=0;NS=3;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=111;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:7:0,0,2,1,3,1:0:0:0,2,1,3,1:0,72,38,111,35:-14.9563,-14.9563,-14.9563,-9.08404,-9.08404,-8.48198,-11.8374,-11.8374,-5.96455,-11.5364,-5.87201,-5.87201,0,-2.74969,-4.96892,-12.1111,-12.1111,-6.24079,-8.9923,-3.02842,-11.8101 1|1:1:0,1,0,0,0,0:0:0:1,0,0,0,0:39,0,0,0,0:-2.57881,-0.30103,0,-2.57881,-0.30103,-2.57881,-2.57881,-0.30103,-2.57881,-2.57881,-2.57881,-0.30103,-2.57881,-2.57881,-2.57881,-2.57881,-0.30103,-2.57881,-2.57881,-2.57881,-2.57881 1|0:14:0,2,8,0,0,4:0:0:2,8,0,0,4:68,310,0,0,133:-36.3292,-32.3825,-31.7804,-10.8146,-6.87769,-8.4064,-36.3292,-32.3825,-10.8146,-36.3292,-36.3292,-32.3825,-10.8146,-36.3292,-36.3292,-25.5751,-21.6386,0,-25.5751,-25.5751,-24.371 dDocent_Contig_1223 167 . N G 170.493 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=190;QR=0;RO=0;RPL=5;RPP=13.8677;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:156:-13.4442,-1.20412,0 1/1:1:0,1:0:0:1:34:-3.30271,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_1224 33 . A T 53.2692 . AB=0.135135;ABP=45.7942;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=101;DPB=101;DPRA=1.15625;EPP=13.8677;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=3766;RO=96;RPL=0;RPP=13.8677;RPPR=211.472;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1055:0:0:0,-8.12781,-95.248 0/0:37:37,0:37:1455:0:0:0,-11.1381,-131.212 0/1:37:32,5:32:1256:5:199:-7.15083,0,-102.164 dDocent_Contig_1225 111 . A C 2827.64 . AB=0.0138889;ABP=150.791;AC=0;AF=0;AN=6;AO=4;CIGAR=1X1M1X;DP=156;DPB=156;DPRA=0;EPP=11.6962;EPPR=85.5263;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=68;QR=1185;RO=38;RPL=0;RPP=11.6962;RPPR=85.5263;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=85.5263;SRR=38;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:72:26,1,45:26:799:1,45:17,1410:-105.631,-112.232,-175.997,0,-62.9763,-50.6538 0|0:41:2,3,35:2:51:3,35:51,1122:-96.4643,-93.3909,-96.4722,-6.52339,-6.88425,0 0|0:43:10,0,33:10:335:0,33:0,1076:-84.192,-87.2023,-114.335,0,-27.4651,-17.5311 dDocent_Contig_1226 16 . T C 3080.84 . AB=0.2;ABP=34.2795;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X1M13D1M;DP=136;DPB=45;DPRA=0;EPP=20.3821;EPPR=52.9542;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=299;QR=893;RO=23;RPL=0;RPP=20.3821;RPPR=52.9542;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:56:16,0,39:16:612:0,39:0,1407:-110.251,-115.067,-165.289,0,-50.4789,-38.7387 1|0:40:1,8,31:1:40:8,31:299,1078:-108.461,-84.2793,-85.1677,-21.1564,0,-15.1224 0|0:40:6,0,34:6:241:0,34:0,1185:-94.895,-96.7012,-116.569,0,-20.2607,-10.0257 dDocent_Contig_1227 51 . T C 2474.22 . AB=0.692308;ABP=40.5935;AC=3;AF=0.5;AN=6;AO=81;CIGAR=1X;DP=117;DPB=117;DPRA=0;EPP=178.9;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3192;QR=1402;RO=36;RPL=81;RPP=178.9;RPPR=81.1833;RPR=0;RUN=1;SAF=81;SAP=178.9;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:11,16:11:421:16:633:-49.1789,0,-30.1096 0/1:53:13,40:13:503:40:1557:-124.427,0,-29.6586 0/1:37:12,25:12:478:25:1002:-79.3381,0,-32.2306 dDocent_Contig_1229 49 . A G 2700.16 . AB=0.536082;ABP=5.20416;AC=3;AF=0.5;AN=6;AO=104;CIGAR=1X;DP=194;DPB=194;DPRA=0;EPP=228.843;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3701;QR=3387;RO=90;RPL=0;RPP=228.843;RPPR=198.443;RPR=104;RUN=1;SAF=104;SAP=228.843;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:31,36:31:1167:36:1266:-94.0502,0,-85.1574 0/1:84:47,37:47:1758:37:1347:-96.2208,0,-133.181 0/1:43:12,31:12:462:31:1088:-85.268,0,-28.9866 dDocent_Contig_1230 98 . N A 159.405 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=168;QR=0;RO=0;RPL=6;RPP=16.0391;RPPR=0;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:127:-11.7448,-1.20412,0 1/1:2:0,2:0:0:2:41:-3.89396,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_1231 7 . G A 2814.93 . AB=0.108108;ABP=101.724;AC=0;AF=0;AN=6;AO=8;CIGAR=2X3M1X;DP=302;DPB=302;DPRA=0;EPP=20.3821;EPPR=376.504;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=307;QR=6336;RO=172;RPL=0;RPP=20.3821;RPPR=376.504;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=172;SRP=376.504;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:109:62,43,0:62:2303:43,0:1585,0:-111.027,0,-175.616,-129.69,-188.56,-318.164 0|0:119:77,42,0:77:2847:42,0:1521,0:-101.342,0,-220.603,-124.521,-233.246,-357.403 0|0:74:33,30,8:33:1186:30,8:1041,307:-74.6478,0,-87.7041,-59.3755,-71.5313,-153.718 dDocent_Contig_1233 153 . A G 299.545 . AB=0.274194;ABP=30.4689;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X1M1X;DP=82;DPB=82;DPRA=0;EPP=42.0968;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=607;QR=2177;RO=64;RPL=0;RPP=42.0968;RPPR=141.985;RPR=18;RUN=1;SAF=0;SAP=42.0968;SAR=18;SRF=0;SRP=141.985;SRR=64;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:20:19,1:19:636:1:35:0,-2.52197,-54.0568 0|1:32:20,12:20:686:12:396:-26.3233,0,-52.4264 0|1:30:25,5:25:855:5:176:-7.15412,0,-68.229 dDocent_Contig_1235 9 . G C 469.674 . AB=0.25;ABP=57.2971;AC=2;AF=0.333333;AN=6;AO=32;CIGAR=1X;DP=172;DPB=172;DPRA=0;EPP=72.4974;EPPR=307.016;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1124;QR=4902;RO=140;RPL=0;RPP=72.4974;RPPR=307.016;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=140;SRP=307.016;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:72:65,7:65:2326:7:236:0,-0.108744,-188.012 0/1:46:39,7:39:1364:7:263:-10.1817,0,-109.195 0/1:54:36,18:36:1212:18:625:-40.3075,0,-93.1093 dDocent_Contig_1237 7 . G A 163.75 . AB=0.180328;ABP=57.1547;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=93;DPB=93;DPRA=0.953125;EPP=26.8965;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=417;QR=2776;RO=81;RPL=0;RPP=26.8965;RPPR=178.9;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:31,0:31:1121:0:0:0,-9.33193,-101.067 0/1:28:22,6:22:787:6:222:-11.9077,0,-62.7155 0/1:33:28,5:28:868:5:195:-7.99021,0,-68.4503 dDocent_Contig_1238 133 . G A 5972.68 . AB=0.0517241;ABP=3849.96;AC=3;AF=0.5;AN=6;AO=114;CIGAR=1X2M1X1M3I2M;DP=2204;DPB=2463.14;DPRA=0;EPP=250.558;EPPR=2908.44;GTI=0;LEN=1;MEANALT=37;MQM=59.5789;MQMR=59.9081;NS=3;NUMALT=2;ODDS=0;PAIRED=0.964912;PAIREDR=0.973094;PAO=0;PQA=0;PQR=62;PRO=2;QA=3714;QR=38781;RO=1338;RPL=0;RPP=250.558;RPPR=2908.44;RPR=114;RUN=1;SAF=0;SAP=250.558;SAR=114;SRF=0;SRP=2908.44;SRR=1338;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:581:354,94,46:354:10185:94,46:3073,1507:-141.63,0,-781.601,-126.489,-688.193,-922.534 0|1:1178:706,219,48:706:19965:219,48:7016,1536:-352.834,0,-1516.97,-441.619,-1459.15,-2010.05 0|1:445:278,72,20:278:8631:72,20:2375,671:-108.326,0,-671.108,-137.66,-638.432,-824.415 dDocent_Contig_1239 65 . C A 935.051 . AB=0.336207;ABP=30.0414;AC=3;AF=0.5;AN=6;AO=39;CIGAR=1X;DP=116;DPB=116;DPRA=0;EPP=87.6977;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1477;QR=2938;RO=77;RPL=39;RPP=87.6977;RPPR=170.214;RPR=0;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:31,21:31:1186:21:793:-56.0286,0,-91.37 0/1:37:26,11:26:992:11:416:-26.6443,0,-78.438 0/1:27:20,7:20:760:7:268:-16.3551,0,-60.5794 dDocent_Contig_1240 205 . A T 1888.6 . AB=0.477612;ABP=3.30199;AC=4;AF=0.666667;AN=6;AO=67;CIGAR=1X;DP=103;DPB=103;DPRA=0;EPP=148.499;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2392;QR=1316;RO=36;RPL=67;RPP=148.499;RPPR=81.1833;RPR=0;RUN=1;SAF=0;SAP=148.499;SAR=67;SRF=0;SRP=81.1833;SRR=36;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:36:1,35:1:37:35:1236:-107.843,-7.13925,0 0/1:28:10,18:10:362:18:648:-50.222,0,-24.4961 0/1:39:25,14:25:917:14:508:-34.3185,0,-71.1105 dDocent_Contig_1241 107 . N A 160.423 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1/1:3:0,3:0:0:3:73:-6.81199,-0.90309,0 1/1:2:0,2:0:0:2:54:-5.12867,-0.60206,0 dDocent_Contig_1242 11 . C A 226.765 . AB=0.571429;ABP=3.63072;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=42;DPB=42;DPRA=1;EPP=20.3821;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=315;QR=1299;RO=34;RPL=0;RPP=20.3821;RPPR=76.8404;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:677:0:0:0,-5.41854,-61.2454 0/1:14:6,8:6:236:8:315:-24.5004,0,-17.3979 0/0:10:10,0:10:386:0:0:0,-3.0103,-35.0903 dDocent_Contig_1243 132 . C G 81.5829 . AB=0.166667;ABP=37.7539;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=80;DPB=80;DPRA=2.16667;EPP=18.2106;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=2719;RO=73;RPL=0;RPP=18.2106;RPPR=161.528;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=161.528;SRR=73;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:30,6:30:1105:6:224:-9.68117,0,-88.9047 0/0:29:28,1:28:1070:1:8:0,-7.92987,-95.8076 0/0:15:15,0:15:544:0:0:0,-4.51545,-49.2845 dDocent_Contig_1245 69 . G A 1158.41 . AB=0.471264;ABP=3.63429;AC=3;AF=0.5;AN=6;AO=41;CIGAR=1X;DP=87;DPB=87;DPRA=0;EPP=92.0407;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1628;QR=1803;RO=46;RPL=41;RPP=92.0407;RPPR=102.898;RPR=0;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:23,15:23:913:15:597:-42.6291,0,-71.041 0/1:32:16,16:16:613:16:628:-47.2212,0,-45.8701 0/1:17:7,10:7:277:10:403:-31.5131,0,-20.1826 dDocent_Contig_1247 12 . T G 256.72 . AB=0.314286;ABP=13.4954;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=44;DPB=44;DPRA=1.94444;EPP=26.8965;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=433;QR=1251;RO=33;RPL=0;RPP=26.8965;RPPR=74.6689;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:13,9:13:483:9:351:-25.3267,0,-37.1758 0/0:9:9,0:9:358:0:0:0,-2.70927,-32.5825 0/1:13:11,2:11:410:2:82:-3.86629,0,-33.329 dDocent_Contig_1249 14 . T G 2458.82 . AB=0.716216;ABP=33.0588;AC=4;AF=0.666667;AN=6;AO=78;CIGAR=1X;DP=101;DPB=101;DPRA=0;EPP=172.385;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3091;QR=921;RO=23;RPL=0;RPP=172.385;RPPR=52.9542;RPR=78;RUN=1;SAF=78;SAP=172.385;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:27:2,25:2:78:25:982:-81.2801,-0.724509,0 0/1:42:7,35:7:284:35:1381:-111.913,0,-13.2905 0/1:32:14,18:14:559:18:728:-56.2116,0,-41.02 dDocent_Contig_1251 30 . T A 1070.04 . AB=0.416667;ABP=8.80089;AC=3;AF=0.5;AN=6;AO=40;CIGAR=1X;DP=96;DPB=96;DPRA=0;EPP=89.8692;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1560;QR=2251;RO=56;RPL=0;RPP=89.8692;RPPR=124.613;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:15,11:15:590:11:427:-30.9502,0,-45.6103 0/1:39:27,12:27:1091:12:472:-31.0874,0,-86.7361 0/1:31:14,17:14:570:17:661:-50.4895,0,-42.3097 dDocent_Contig_1252 27 . G C 11666.2 . AB=0.674216;ABP=154.332;AC=3;AF=0.5;AN=6;AO=387;CIGAR=1X;DP=574;DPB=574;DPRA=0;EPP=843.37;EPPR=409.076;GTI=0;LEN=1;MEANALT=1;MQM=59.9845;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.984496;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=14946;QR=7313;RO=187;RPL=0;RPP=843.37;RPPR=409.076;RPR=387;RUN=1;SAF=387;SAP=843.37;SAR=0;SRF=187;SRP=409.076;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:244:71,173:71:2746:173:6642:-524.119,0,-173.832 0/1:221:77,144:77:3019:144:5605:-437.804,0,-205.292 0/1:109:39,70:39:1548:70:2699:-210.224,0,-106.754 dDocent_Contig_1253 69 . G A 31.7162 . AB=0.25;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=29;DPB=29;DPRA=0.761905;EPP=7.35324;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=1046;RO=27;RPL=2;RPP=7.35324;RPPR=61.6401;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:430:0:0:0,-3.31133,-39.0541 0/0:10:10,0:10:384:0:0:0,-3.0103,-34.9162 0/1:8:6,2:6:232:2:78:-4.99523,0,-18.8407 dDocent_Contig_1254 31 . C T 313.931 . AB=0.207547;ABP=42.3836;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=5M1X5M;DP=171;DPB=170;DPRA=1.65625;EPP=26.8965;EPPR=320.045;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=419;QR=5689;RO=146;RPL=0;RPP=26.8965;RPPR=320.045;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=146;SRP=320.045;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:86:74,11,0:74:2866:11,0:424,0:-12.819,0,-232.416,-35.0952,-235.727,-270.543 0|0:32:30,0,0:30:1164:0,0:0,0:0,-9.0309,-104.952,-9.0309,-104.952,-104.952 0|1:53:42,0,11:42:1659:0,11:0,419:-22.097,-34.7402,-171.266,0,-136.909,-133.597 dDocent_Contig_1255 61 . C A 2668.09 . AB=0.401639;ABP=23.5147;AC=3;AF=0.5;AN=6;AO=98;CIGAR=1X;DP=244;DPB=244;DPRA=0;EPP=215.815;EPPR=320.045;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3833;QR=5706;RO=146;RPL=98;RPP=215.815;RPPR=320.045;RPR=0;RUN=1;SAF=98;SAP=215.815;SAR=0;SRF=146;SRP=320.045;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:89:43,46:43:1673:46:1777:-133.364,0,-124.01 0/1:71:47,24:47:1832:24:946:-64.0682,0,-143.723 0/1:84:56,28:56:2201:28:1110:-74.9003,0,-172.986 dDocent_Contig_1256 24 . A G 2149.21 . AB=0.693069;ABP=35.7114;AC=3;AF=0.5;AN=6;AO=70;CIGAR=1X;DP=101;DPB=101;DPRA=0;EPP=155.013;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2777;QR=1246;RO=31;RPL=0;RPP=155.013;RPPR=70.3259;RPR=70;RUN=1;SAF=70;SAP=155.013;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:13,30:13:517:30:1183:-93.8071,0,-33.9314 0/1:24:3,21:3:122:21:832:-67.9692,0,-4.14777 0/1:34:15,19:15:607:19:762:-58.6667,0,-44.7332 dDocent_Contig_1257 133 . G T 44.1729 . AB=0.130435;ABP=57.5803;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=143;DPB=143;DPRA=0.948454;EPP=16.0391;EPPR=300.502;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=216;QR=5149;RO=137;RPL=0;RPP=16.0391;RPPR=300.502;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=300.502;SRR=137;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:40,6:40:1515:6:216:-5.94016,0,-122.774 0/0:42:42,0:42:1547:0:0:0,-12.6433,-139.488 0/0:55:55,0:55:2087:0:0:0,-16.5566,-188.058 dDocent_Contig_1259 47 . G A 253.782 . AB=0.4;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=93;DPB=93;DPRA=0.735294;EPP=24.725;EPPR=88.0117;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=382;QR=3268;RO=83;RPL=0;RPP=24.725;RPPR=88.0117;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:45:45,0:45:1779:0:0:0,-13.5463,-160.325 0/0:23:23,0:23:906:0:0:0,-6.92369,-81.8477 0/1:25:15,10:15:583:10:382:-27.2021,0,-45.2767 dDocent_Contig_1260 98 . N A 11981.6 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=407;CIGAR=1X;DP=407;DPB=407;DPRA=0;EPP=886.8;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=49.1032;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.914005;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=13751;QR=0;RO=0;RPL=407;RPP=886.8;RPPR=0;RPR=0;RUN=1;SAF=407;SAP=886.8;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:167:0,167:0:0:167:5697:-498.598,-50.272,0 1/1:91:0,91:0:0:91:3052:-263.887,-27.3937,0 1/1:149:0,149:0:0:149:5002:-435.193,-44.8535,0 dDocent_Contig_1262 98 . N A 11735.6 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=393;CIGAR=1X;DP=404;DPB=404;DPRA=0;EPP=856.399;EPPR=0;GTI=0;LEN=1;MEANALT=2.66667;MQM=51.9746;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.992366;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=13197;QR=0;RO=0;RPL=393;RPP=856.399;RPPR=0;RPR=0;RUN=1;SAF=393;SAP=856.399;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:180:0,175:0:0:175:5839:-517.482,-52.6803,0 1/1:108:0,102:0:0:102:3395:-303.16,-30.7051,0 1/1:116:0,116:0:0:116:3963:-352.438,-34.9195,0 dDocent_Contig_1265 98 . N T 37.0428 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=35;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:7:-0.699998,-0.30103,0 1/1:2:0,2:0:0:2:28:-2.65996,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_1266 74 . T C 2130.81 . AB=0.586957;ABP=12.0738;AC=3;AF=0.5;AN=6;AO=81;CIGAR=1X;DP=138;DPB=138;DPRA=0;EPP=178.9;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2880;QR=2022;RO=57;RPL=81;RPP=178.9;RPPR=126.784;RPR=0;RUN=1;SAF=81;SAP=178.9;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:11,39:11:392:39:1394:-110.705,0,-20.5678 0/1:36:25,11:25:881:11:393:-24.8728,0,-68.7691 0/1:52:21,31:21:749:31:1093:-83.0257,0,-52.0824 dDocent_Contig_1268 9 . T A 958.007 . AB=0.230769;ABP=11.1951;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=2X;DP=83;DPB=83;DPRA=0;EPP=9.52472;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=34;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=107;QR=1667;RO=46;RPL=0;RPP=9.52472;RPPR=102.898;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:30:14,0,16:14:464:0,16:0,601:-44.8638,-49.0782,-86.58,0,-37.8519,-33.0354 0|0:40:22,0,18:22:834:0,18:0,705:-51.6535,-58.2762,-126.652,0,-68.7616,-63.343 0|1:13:10,3,0:10:369:3,0:107,0:-4.80602,0,-29.6433,-7.81632,-30.5464,-38.0381 dDocent_Contig_1269 67 . A T 79.8588 . AB=0.157895;ABP=41.6397;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=103;DPB=103;DPRA=1.16923;EPP=16.0391;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=3601;RO=97;RPL=6;RPP=16.0391;RPPR=213.643;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:35:35,0:35:1304:0:0:0,-10.536,-117.654 0/1:38:32,6:32:1207:6:232:-9.80979,0,-97.4872 0/0:30:30,0:30:1090:0:0:0,-9.0309,-98.4095 dDocent_Contig_1270 16 . T A 5394.19 . AB=0.402083;ABP=42.9835;AC=3;AF=0.5;AN=6;AO=193;CIGAR=1X;DP=480;DPB=480;DPRA=0;EPP=422.104;EPPR=626.223;GTI=0;LEN=1;MEANALT=1;MQM=59.9378;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.989637;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7656;QR=11514;RO=287;RPL=0;RPP=422.104;RPPR=626.223;RPR=193;RUN=1;SAF=193;SAP=422.104;SAR=0;SRF=287;SRP=626.223;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:163:100,63:100:4008:63:2463:-172.757,0,-311.638 0/1:126:89,37:89:3557:37:1486:-96.0505,0,-282.236 0/1:191:98,93:98:3949:93:3707:-276.134,0,-297.887 dDocent_Contig_1271 41 . C T 456.956 . AB=0.409091;ABP=6.16881;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=64;DPB=64;DPRA=1.1;EPP=42.0968;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=686;QR=1829;RO=46;RPL=0;RPP=42.0968;RPPR=102.898;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:18,16:18:720:16:607:-44.7306,0,-54.8918 0/1:10:8,2:8:313:2:79:-4.48733,0,-25.5215 0/0:20:20,0:20:796:0:0:0,-6.0206,-71.9605 dDocent_Contig_1272 25 . A T 45.571 . AB=0.148148;ABP=32.0437;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=74;DPB=74;DPRA=3.2;EPP=13.8677;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=2681;RO=69;RPL=0;RPP=13.8677;RPPR=152.842;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:394:0:0:0,-3.0103,-35.8185 0/1:27:23,4:23:884:4:157:-6.38099,0,-71.7434 0/0:37:36,1:36:1403:1:41:0,-7.04354,-122.438 dDocent_Contig_1274 34 . T A 69.6705 . AB=0.112245;ABP=130.994;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=133;DPB=133;DPRA=1.4;EPP=26.8965;EPPR=267.93;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=436;QR=4757;RO=122;RPL=0;RPP=26.8965;RPPR=267.93;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=122;SRP=267.93;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:40,5:40:1525:5:196:-4.46857,0,-123.947 0/1:53:47,6:47:1834:6:240:-6.02086,0,-149.327 0/0:35:35,0:35:1398:0:0:0,-10.536,-126.08 dDocent_Contig_1275 10 . G C 268.277 . AB=0.144231;ABP=117.347;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X3M1X;DP=169;DPB=169;DPRA=0;EPP=37.7539;EPPR=304.845;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.964029;PAO=0;PQA=0;PQR=0;PRO=0;QA=611;QR=5209;RO=139;RPL=0;RPP=37.7539;RPPR=304.845;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=139;SRP=304.845;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:76:57,13,6,0:57:2133:13,6,0:500,232,0:-23.8888,0,-170.75,-21.9917,-155.607,-194.852,-41.0476,-174.664,-196.658,-215.714 0|0:28:19,2,3,4:19:716:2,3,4:80,119,149:-6.46113,-5.58674,-63.654,-2.38003,-54.458,-60.147,0,-52.0651,-48.8591,-57.4528 0|0:65:63,1,0,1:63:2360:1,0,1:31,0,41:0,-16.5262,-209.465,-18.9649,-209.766,-212.254,-15.5311,-206.382,-208.869,-208.568 dDocent_Contig_1276 18 . C T 163.548 . AB=0.272727;ABP=12.8806;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=2M1X;DP=65;DPB=75;DPRA=0;EPP=18.2106;EPPR=115.927;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=275;QR=2064;RO=52;RPL=0;RPP=18.2106;RPPR=115.927;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:29:25,4,0:25:994:4,0:147,0:-4.85679,0,-81.0307,-12.3825,-82.2348,-94.246 0|1:22:14,2,6:14:557:2,6:78,234:-15.0196,-12.8224,-58.089,0,-39.4593,-44.0638 0|0:14:13,0,1:13:513:0,1:0,41:0,-3.91339,-46.1093,-0.119853,-42.7241,-42.4231 dDocent_Contig_1277 66 . G T 212.557 . AB=0.197368;ABP=63.4687;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=103;DPB=103;DPRA=1.40741;EPP=35.5824;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=522;QR=3037;RO=88;RPL=15;RPP=35.5824;RPPR=194.1;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:932:0:0:0,-8.12781,-84.1946 0/1:21:15,6:15:517:6:207:-12.6465,0,-40.5362 0/1:55:46,9:46:1588:9:315:-12.1321,0,-126.656 dDocent_Contig_1278 107 . N A 289.939 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=26.8965;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=12.2298;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=319;QR=0;RO=0;RPL=0;RPP=26.8965;RPPR=0;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:11:0,11:0:0:11:319:-28.9939,-3.31133,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_1280 29 . T A 178.651 . AB=0.153846;ABP=97.7199;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=143;DPB=143;DPRA=0;EPP=35.5824;EPPR=280.959;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=575;QR=4933;RO=128;RPL=0;RPP=35.5824;RPPR=280.959;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=128;SRP=280.959;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:43,8:43:1659:8:301:-12.0915,0,-134.208 0/1:40:34,6:34:1297:6:233:-9.29656,0,-104.967 0/0:52:51,1:51:1977:1:41:0,-11.559,-174.05 dDocent_Contig_1281 19 . A T 270.999 . AB=0.4;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=75;DPB=75;DPRA=1;EPP=24.725;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=401;QR=2575;RO=65;RPL=0;RPP=24.725;RPPR=144.156;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1223:0:0:0,-9.33193,-110.343 0/0:19:19,0:19:749:0:0:0,-5.71957,-67.7284 0/1:25:15,10:15:603:10:401:-28.9238,0,-47.0822 dDocent_Contig_1282 70 . A C 990.774 . AB=0.233333;ABP=169.779;AC=3;AF=0.5;AN=6;AO=63;CIGAR=1X;DP=270;DPB=270;DPRA=0;EPP=139.813;EPPR=452.505;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2055;QR=6631;RO=207;RPL=63;RPP=139.813;RPPR=452.505;RPR=0;RUN=1;SAF=63;SAP=139.813;SAR=0;SRF=207;SRP=452.505;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:109:74,35:74:2340:35:1124:-68.638,0,-178.045 0/1:72:57,15:57:1817:15:497:-23.3724,0,-142.13 0/1:89:76,13:76:2474:13:434:-12.5898,0,-196.125 dDocent_Contig_1283 1 . N G 180.929 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=29.1429;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:105:-7.61909,-0.90309,0 ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:129:-10.1723,-1.20412,0 dDocent_Contig_1284 210 . G T 335.808 . AB=0.0392157;ABP=97.0649;AC=0;AF=0;AN=6;AO=2;CIGAR=1M1X2M4I3M6I4M1X;DP=171;DPB=224.667;DPRA=0;EPP=7.35324;EPPR=69.0688;GTI=0;LEN=1;MEANALT=16;MQM=40;MQMR=59.8421;NS=3;NUMALT=6;ODDS=0;PAIRED=1;PAIREDR=0.736842;PAO=1.71429;PQA=36.4286;PQR=36.4286;PRO=1.71429;QA=68;QR=1312;RO=38;RPL=2;RPP=7.35324;RPPR=21.525;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=8;SRP=30.668;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:61:12,0,0,0,2,7,0:12:391:0,0,0,2,7,0:0,0,0,74,250,0:-15.884,-19.4964,-51.0585,-19.4964,-51.0585,-51.0585,-19.4964,-51.0585,-51.0585,-51.0585,-13.5136,-45.0758,-45.0758,-45.0758,-44.4738,0,-31.5618,-31.5618,-31.5618,-25.579,-29.4546,-19.4964,-51.0585,-51.0585,-51.0585,-45.0758,-31.5618,-51.0585 0|0:59:13,2,0,0,0,7,3:13:457:2,0,0,0,7,3:76,0,0,0,253,110:-15.7798,-13.8413,-50.4391,-19.6932,-51.0412,-56.8927,-19.6932,-51.0412,-56.8927,-56.8927,-19.6932,-51.0412,-56.8927,-56.8927,-56.8927,0,-31.3491,-37.2008,-37.2008,-37.2008,-35.0935,-11.1434,-42.4919,-48.3435,-48.3435,-48.3435,-28.6514,-47.4404 0|0:51:13,0,2,3,0,4,0:13:464:0,2,3,0,4,0:0,68,99,0,146,0:-7.43977,-11.3532,-49.1758,-6.01092,-43.8335,-43.2315,-3.57018,-41.3926,-36.0505,-40.4895,-11.3532,-49.1758,-43.8335,-41.3926,-49.1758,0,-37.8232,-32.481,-30.0402,-37.8232,-36.6191,-11.3532,-49.1758,-43.8335,-41.3926,-49.1758,-37.8232,-49.1758 dDocent_Contig_1285 42 . T C 30.7788 . AB=0.333333;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=63;DPB=63;DPRA=0.869565;EPP=19.0002;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=18.1818;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.0909091;PAIREDR=0.942308;PAO=0;PQA=0;PQR=0;PRO=0;QA=390;QR=2056;RO=52;RPL=1;RPP=19.0002;RPPR=115.927;RPR=10;RUN=1;SAF=2;SAP=12.6832;SAR=9;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:17,5:17:662:5:178:0,-0.459651,-53.7496 0/0:23:23,0:23:912:0:0:0,-6.92369,-82.3879 0/1:18:12,6:12:482:6:212:-4.90092,0,-38.3132 dDocent_Contig_1286 15 . G A 162.915 . AB=0.219512;ABP=31.0276;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=50;DPB=50;DPRA=2.27778;EPP=22.5536;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=349;QR=1629;RO=41;RPL=0;RPP=22.5536;RPPR=92.0407;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:19,4:19:761:4:157:-7.58399,0,-61.888 0/1:18:13,5:13:507:5:192:-12.2304,0,-40.5573 0/0:9:9,0:9:361:0:0:0,-2.70927,-32.8541 dDocent_Contig_1288 91 . G A 2986.66 . AB=0.613757;ABP=24.254;AC=3;AF=0.5;AN=6;AO=116;CIGAR=1X;DP=189;DPB=189;DPRA=0;EPP=254.901;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4002;QR=2496;RO=73;RPL=116;RPP=254.901;RPPR=161.528;RPR=0;RUN=1;SAF=116;SAP=254.901;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:18,46:18:615:46:1600:-125.028,0,-36.4057 0/1:65:21,44:21:731:44:1503:-115.997,0,-46.546 0/1:60:34,26:34:1150:26:899:-63.1641,0,-85.7403 dDocent_Contig_1290 98 . N C 51.2975 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=54;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:54:-5.12867,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_1291 137 . C G 949.594 . AB=0.327731;ABP=33.6846;AC=3;AF=0.5;AN=6;AO=39;CIGAR=1X;DP=119;DPB=119;DPRA=0;EPP=87.6977;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1503;QR=3080;RO=80;RPL=0;RPP=87.6977;RPPR=176.728;RPR=39;RUN=1;SAF=0;SAP=87.6977;SAR=39;SRF=0;SRP=176.728;SRR=80;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:34,11:34:1321:11:423:-24.8769,0,-105.613 0/1:43:35,8:35:1342:8:301:-14.5016,0,-108.12 0/1:31:11,20:11:417:20:779:-61.1037,0,-28.5439 dDocent_Contig_1292 52 . G T 120.442 . AB=0.218182;ABP=40.9518;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=129;DPB=129;DPRA=1.48649;EPP=29.068;EPPR=257.073;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=335;QR=3553;RO=117;RPL=12;RPP=29.068;RPPR=257.073;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=117;SRP=257.073;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:41,0:41:1234:0:0:0,-12.3422,-111.333 0/1:55:43,12:43:1256:12:335:-13.8681,0,-96.7491 0/0:33:33,0:33:1063:0:0:0,-9.93399,-95.9625 dDocent_Contig_1293 27 . C G 56.3558 . AB=0.230769;ABP=11.1951;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=76;DPB=76;DPRA=1.15217;EPP=16.0391;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=2814;RO=70;RPL=0;RPP=16.0391;RPPR=155.013;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:925:0:0:0,-6.92369,-83.5528 0/0:40:37,3:37:1488:3:123:0,-0.576411,-122.696 0/1:13:10,3:10:401:3:122:-7.4591,0,-32.5356 dDocent_Contig_1294 8 . A G 3415.22 . AB=0.687117;ABP=52.5812;AC=3;AF=0.5;AN=6;AO=112;CIGAR=2X;DP=163;DPB=163;DPRA=0;EPP=246.215;EPPR=52.9542;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.956522;PAO=0;PQA=0;PQR=0;PRO=0;QA=3848;QR=887;RO=23;RPL=0;RPP=246.215;RPPR=52.9542;RPR=112;RUN=1;SAF=112;SAP=246.215;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:41:0,28,13:0:0:28,13:1000,502:-123.114,-41.6152,-33.1863,-81.8752,0,-77.9618 0|1:49:8,33,7:8:310:33,7:1196,272:-95.2097,0,-15.5343,-75.2618,-3.11568,-98.6275 0|1:73:15,51,3:15:577:51,3:1652,113:-128.721,0,-32.0428,-123.974,-38.1354,-170.457 dDocent_Contig_1295 8 . G A 81.9944 . AB=0.118644;ABP=152.069;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=200;DPB=200;DPRA=0.719512;EPP=33.4109;EPPR=406.904;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=517;QR=6450;RO=186;RPL=0;RPP=33.4109;RPPR=406.904;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=186;SRP=406.904;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:54,8:54:1978:8:297:-8.4198,0,-159.605 0/1:56:50,6:50:1746:6:220:-3.29524,0,-140.536 0/0:82:82,0:82:2726:0:0:0,-24.6845,-245.546 dDocent_Contig_1296 174 . C G 2602.31 . AB=0.758929;ABP=68.232;AC=3;AF=0.5;AN=6;AO=85;CIGAR=1X;DP=112;DPB=112;DPRA=0;EPP=187.585;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3318;QR=1032;RO=27;RPL=85;RPP=187.585;RPPR=61.6401;RPR=0;RUN=1;SAF=0;SAP=187.585;SAR=85;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:10,27:10:353:27:1040:-82.7582,0,-20.9569 0/1:35:12,23:12:474:23:888:-69.6826,0,-32.4758 0/1:40:5,35:5:205:35:1390:-113.313,0,-6.79381 dDocent_Contig_1300 209 . N G 2711.01 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=80;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=176.728;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2996;QR=0;RO=0;RPL=80;RPP=176.728;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=176.728;SAR=80;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:36:0,36:0:0:36:1325:-119.497,-10.8371,0 1/1:26:0,26:0:0:26:958:-86.5056,-7.82678,0 1/1:18:0,18:0:0:18:713:-64.4966,-5.41854,0 dDocent_Contig_1302 14 . C A 72.522 . AB=0.122807;ABP=73.4498;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=118;DPB=118;DPRA=0;EPP=22.5536;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=366;QR=4341;RO=109;RPL=0;RPP=22.5536;RPPR=239.701;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:50,7:50:1967:7:284:-8.77508,0,-160.077 0/0:31:30,1:30:1210:1:41:0,-5.23736,-105.08 0/0:30:29,1:29:1164:1:41:0,-4.93633,-100.943 dDocent_Contig_1303 19 . G T 125.611 . AB=0.170213;ABP=47.41;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=147;DPB=147;DPRA=1.48649;EPP=22.5536;EPPR=302.673;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=353;QR=5400;RO=138;RPL=0;RPP=22.5536;RPPR=302.673;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=138;SRP=302.673;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:37,0:37:1457:0:0:0,-11.1381,-131.382 0/1:47:39,8:39:1514:8:313:-14.385,0,-122.367 0/0:63:62,1:62:2429:1:40:0,-14.9692,-214.774 dDocent_Contig_1304 93 . A T 51.6992 . AB=0.3;ABP=6.48466;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=52;DPB=52;DPRA=0.47619;EPP=9.52472;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=1678;RO=49;RPL=3;RPP=9.52472;RPPR=109.412;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:7,3:7:242:3:104:-6.69279,0,-19.1074 0/0:29:29,0:29:986:0:0:0,-8.72987,-89.0497 0/0:13:13,0:13:450:0:0:0,-3.91339,-40.8313 dDocent_Contig_1305 42 . A T 159.942 . AB=0.47619;ABP=3.1137;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=62;DPB=62;DPRA=1.02439;EPP=24.725;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=262;QR=1695;RO=52;RPL=0;RPP=24.725;RPPR=115.927;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:11,10:11:373:10:262:-17.5171,0,-27.5765 0/0:27:27,0:27:855:0:0:0,-8.12781,-77.2455 0/0:14:14,0:14:467:0:0:0,-4.21442,-42.349 dDocent_Contig_1306 64 . A G 303.047 . AB=0.253521;ABP=40.4758;AC=1;AF=0.166667;AN=6;AO=20;CIGAR=1X;DP=131;DPB=131;DPRA=2.12;EPP=46.4397;EPPR=244.044;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.45;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=661;QR=3789;RO=111;RPL=20;RPP=46.4397;RPPR=244.044;RPR=0;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=111;SRP=244.044;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:35:33,2:33:1126:2:70:0,-3.88865,-94.9974 0/1:71:53,18:53:1819:18:591:-32.1286,0,-142.622 0/0:25:25,0:25:844:0:0:0,-7.52575,-76.2725 dDocent_Contig_1307 45 . A G 5808.52 . AB=0.842795;ABP=236.742;AC=3;AF=0.5;AN=6;AO=193;CIGAR=1X;DP=229;DPB=229;DPRA=0;EPP=422.104;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7275;QR=1355;RO=36;RPL=0;RPP=422.104;RPPR=81.1833;RPR=193;RUN=1;SAF=193;SAP=422.104;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:16,49:16:599:49:1817:-144.185,0,-34.6808 0/1:102:11,91:11:415:91:3447:-279.625,0,-6.9911 0/1:62:9,53:9:341:53:2011:-162.565,0,-12.3809 dDocent_Contig_1309 24 . T A 130.644 . AB=0.233333;ABP=21.5402;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=45;DPB=45;DPRA=1;EPP=18.2106;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=276;QR=1378;RO=38;RPL=0;RPP=18.2106;RPPR=85.5263;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:542:0:0:0,-4.51545,-49.108 0/1:15:10,5:10:369:5:198:-13.6816,0,-29.0404 0/1:15:13,2:13:467:2:78:-2.88733,0,-37.8524 dDocent_Contig_1310 32 . C T 4522.89 . AB=0.0583333;ABP=206.332;AC=0;AF=0;AN=6;AO=11;CIGAR=1X3M3X5M1X;DP=203;DPB=203;DPRA=0;EPP=26.8965;EPPR=74.6689;GTI=0;LEN=1;MEANALT=4.66667;MQM=38.5455;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=313;QR=1236;RO=33;RPL=0;RPP=26.8965;RPPR=74.6689;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:57:19,3,5,28:19:720:3,5,28:98,191,1067:-81.8366,-79.8064,-137.938,-71.8824,-123.169,-129.414,0,-51.3247,-43.3977,-50.6453 0|0:63:10,4,4,44:10:374:4,4,44:105,157,1718:-138.25,-133.09,-162.508,-128.347,-150.799,-157.767,0,-22.492,-17.7247,-17.4022 0|0:83:4,4,2,71:4:142:4,2,71:110,73,2763:-235.725,-228.895,-239.255,-230.966,-234.496,-241.928,-9.7821,-13.3561,-15.3971,0 dDocent_Contig_1312 7 . G A 200.866 . AB=0.232558;ABP=29.7245;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=135;DPB=135;DPRA=0.934783;EPP=24.725;EPPR=270.101;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=380;QR=4195;RO=123;RPL=0;RPP=24.725;RPPR=270.101;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:33,10:33:1166:10:380:-21.6095,0,-92.2789 0/0:43:42,0:42:1412:0:0:0,-12.6433,-127.148 0/0:49:48,0:48:1617:0:0:0,-14.4494,-145.676 dDocent_Contig_1313 98 . N G 55.1043 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=58;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:58:-5.50935,-0.60206,0 dDocent_Contig_1314 1 . N G 2567.77 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=87;CIGAR=1X;DP=87;DPB=87;DPRA=0;EPP=166.769;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=46.8391;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2960;QR=0;RO=0;RPL=0;RPP=191.928;RPPR=0;RPR=87;RUN=1;SAF=3;SAP=166.769;SAR=84;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:28:0,28:0:0:28:957:-83.3055,-8.42884,0 1/1:14:0,14:0:0:14:451:-40.3154,-4.21442,0 1/1:45:0,45:0:0:45:1552:-132.679,-13.5464,0 dDocent_Contig_1315 96 . G T 1304.23 . AB=0.565217;ABP=7.25883;AC=3;AF=0.5;AN=6;AO=65;CIGAR=1X;DP=115;DPB=115;DPRA=0;EPP=144.156;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1886;QR=1643;RO=50;RPL=65;RPP=144.156;RPPR=111.584;RPR=0;RUN=1;SAF=65;SAP=144.156;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:34,13:34:1135:13:356:-18.1599,0,-88.3034 0/1:26:5,21:5:155:21:604:-46.8087,0,-6.42979 0/1:42:11,31:11:353:31:926:-70.9769,0,-19.4361 dDocent_Contig_1316 13 . T C 4059.98 . AB=0.797101;ABP=55.9124;AC=4;AF=0.666667;AN=6;AO=122;CIGAR=1X;DP=136;DPB=136;DPRA=0;EPP=267.93;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4773;QR=563;RO=14;RPL=0;RPP=267.93;RPPR=33.4109;RPR=122;RUN=1;SAF=122;SAP=267.93;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:7,35:7:281:35:1340:-108.215,0,-13.0189 1/1:67:0,67:0:0:67:2653:-238.913,-20.169,0 0/1:27:7,20:7:282:20:780:-62.3915,0,-17.6248 dDocent_Contig_1318 33 . C T 8287.11 . AB=0.052017;ABP=1645.07;AC=0;AF=0;AN=6;AO=49;CIGAR=1M4D3M1X1M1D1M;DP=942;DPB=895.417;DPRA=0;EPP=109.412;EPPR=135.974;GTI=0;LEN=1;MEANALT=43.6667;MQM=40.5102;MQMR=60;NS=3;NUMALT=6;ODDS=0;PAIRED=0.857143;PAIREDR=0.884058;PAO=0;PQA=0;PQR=0;PRO=0;QA=1926;QR=2659;RO=69;RPL=0;RPP=109.412;RPPR=152.842;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=67;SRP=135.974;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:369:33,32,13,11,83,37,17:33:1288:32,13,11,83,37,17:1259,499,435,3261,1475,649:-273.864,-203.95,-300.197,-242.847,-268.88,-344.814,-248,-274.033,-312.931,-350.57,-15.5907,-41.6259,-80.5219,-85.6753,-96.4873,-162.326,-188.36,-227.257,-232.41,0,-257.069,-230.559,-256.592,-295.489,-300.643,-68.2337,-214.969,-331.322 0|0:279:15,9,20,22,56,16,36:15:573:9,20,22,56,16,36:347,798,859,2215,609,1450:-250.273,-227.797,-272.099,-189.065,-209.086,-230.056,-184.174,-204.195,-165.463,-224.563,-72.501,-92.5217,-53.7894,-48.8985,-102.655,-204.855,-224.875,-186.143,-181.252,-69.5791,-247.05,-135.277,-155.297,-116.565,-111.674,0,-132.355,-171.451 0|0:294:21,8,13,17,87,8,29:21:798:8,13,17,87,8,29:320,519,665,3462,308,1174:-310.097,-297.905,-360.931,-273.673,-320.594,-335.194,-261.75,-308.67,-284.438,-322.067,-31.3705,-78.2926,-54.0592,-42.1358,-70.6166,-291.136,-338.057,-313.825,-301.901,-71.5228,-354.163,-219.615,-266.536,-242.304,-230.381,0,-259.767,-276.32 dDocent_Contig_1319 185 . C T 597.108 . AB=0.301205;ABP=31.5011;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=83;DPB=83;DPRA=0;EPP=57.2971;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=970;QR=2301;RO=58;RPL=25;RPP=57.2971;RPPR=128.956;RPR=0;RUN=1;SAF=0;SAP=57.2971;SAR=25;SRF=0;SRP=128.956;SRR=58;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:13,16:13:508:16:613:-46.769,0,-37.3365 0/1:13:12,1:12:479:1:41:-0.181177,0,-39.5478 0/1:41:33,8:33:1314:8:316:-16.4624,0,-106.176 dDocent_Contig_1320 25 . G A 33.1946 . AB=0.142857;ABP=26.2761;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=41;DPB=41;DPRA=2.1;EPP=9.52472;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=1515;RO=38;RPL=0;RPP=9.52472;RPPR=85.5263;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:391:0:0:0,-3.0103,-35.5472 0/1:21:18,3:18:716:3:123:-5.14316,0,-58.4458 0/0:10:10,0:10:408:0:0:0,-3.0103,-37.0806 dDocent_Contig_1322 8 . G T 1145.38 . AB=0.453782;ABP=5.21827;AC=3;AF=0.5;AN=6;AO=54;CIGAR=1X;DP=119;DPB=119;DPRA=0;EPP=120.27;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1722;QR=2295;RO=65;RPL=0;RPP=120.27;RPPR=144.156;RPR=54;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:38,16:38:1378:16:556:-34.0995,0,-108.048 0/1:24:10,14:10:349:14:508:-38.8321,0,-24.5168 0/1:41:17,24:17:568:24:658:-47.1296,0,-39.0833 dDocent_Contig_1324 33 . C T 108.469 . AB=0.2;ABP=26.4622;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=136;DPB=136;DPRA=0.566038;EPP=16.0391;EPPR=285.302;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=237;QR=5083;RO=130;RPL=0;RPP=16.0391;RPPR=285.302;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=130;SRP=285.302;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:48:48,0:48:1877:0:0:0,-14.4494,-169.152 0/0:58:58,0:58:2256:0:0:0,-17.4597,-203.222 0/1:30:24,6:24:950:6:237:-12.6708,0,-76.772 dDocent_Contig_1325 133 . C A 155.437 . AB=0.243243;ABP=24.1968;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=68;DPB=68;DPRA=2.3871;EPP=22.5536;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=313;QR=2101;RO=59;RPL=0;RPP=22.5536;RPPR=131.127;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=131.127;SRR=59;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:527:0:0:0,-4.51545,-47.7584 0/0:16:16,0:16:565:0:0:0,-4.81648,-51.177 0/1:37:28,9:28:1009:9:313:-17.3676,0,-79.9844 dDocent_Contig_1326 19 . C T 44.3922 . AB=0.142857;ABP=34.0313;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=87;DPB=87;DPRA=0.949153;EPP=11.6962;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=3262;RO=83;RPL=0;RPP=11.6962;RPPR=183.243;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1052:0:0:0,-8.12781,-94.9746 0/0:32:32,0:32:1260:0:0:0,-9.63296,-113.675 0/1:28:24,4:24:950:4:159:-6.26311,0,-77.3703 dDocent_Contig_1327 37 . C G 247.883 . AB=0.314286;ABP=13.4954;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=66;DPB=66;DPRA=2.25806;EPP=26.8965;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=409;QR=2214;RO=55;RPL=0;RPP=26.8965;RPPR=122.441;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:634:0:0:0,-4.81648,-57.3923 0/0:15:15,0:15:609:0:0:0,-4.51545,-55.1482 0/1:35:24,11:24:971:11:409:-26.6122,0,-77.1513 dDocent_Contig_1328 1 . N A 125.641 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=14;CIGAR=1X4M;DP=17;DPB=33.8;DPRA=0;EPP=33.4109;EPPR=0;GTI=0;LEN=1;MEANALT=1.66667;MQM=55.6429;MQMR=0;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0;PAO=10.5;PQA=187;PQR=187;PRO=10.5;QA=140;QR=0;RO=0;RPL=0;RPP=33.4109;RPPR=0;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:11:0,0,2,9:0:0:0,2,9:0,15,105:-9.34589,-9.34589,-9.34589,-8.61229,-8.61229,-8.01023,-2.70927,-2.70927,-2.05367,0 1|1:3:0,1,0,2:0:0:1,0,2:8,0,14:-0.841936,-0.522449,-0.221419,-0.841936,-0.522449,-0.841936,-0.60206,-0.103092,-0.60206,0 1|1:3:0,0,0,3:0:0:0,0,3:0,0,21:-1.77827,-1.77827,-1.77827,-1.77827,-1.77827,-1.77827,-0.90309,-0.90309,-0.90309,0 dDocent_Contig_1331 100 . N C 449.714 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=13;CIGAR=6X;DP=13;DPB=13;DPRA=0;EPP=31.2394;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=57.3846;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.769231;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=486;QR=0;RO=0;RPL=0;RPP=31.2394;RPPR=0;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:5:0,5:0:0:5:183:-16.8261,-1.50515,0 1|1:6:0,6:0:0:6:229:-20.6545,-1.80618,0 1|1:2:0,2:0:0:2:74:-7.01328,-0.60206,0 dDocent_Contig_1335 175 . C G 3423.85 . AB=0.770833;ABP=94.755;AC=3;AF=0.5;AN=6;AO=111;CIGAR=1X;DP=144;DPB=144;DPRA=0;EPP=244.044;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4340;QR=1277;RO=32;RPL=111;RPP=244.044;RPPR=72.4974;RPR=0;RUN=1;SAF=0;SAP=244.044;SAR=111;SRF=0;SRP=72.4974;SRR=32;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:14,39:14:548:39:1516:-120.724,0,-33.7028 0/1:39:5,34:5:201:34:1328:-108.052,0,-6.73072 0/1:52:13,38:13:528:38:1496:-119.133,0,-32.1144 dDocent_Contig_1336 112 . G C 439.047 . AB=0.0853659;ABP=125.46;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1M1X4M;DP=82;DPB=82.3333;DPRA=0;EPP=18.2106;EPPR=89.8692;GTI=0;LEN=1;MEANALT=4.33333;MQM=60;MQMR=57.8;NS=3;NUMALT=4;ODDS=0;PAIRED=0.428571;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=1317;RO=40;RPL=0;RPP=18.2106;RPPR=89.8692;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=0;SRP=89.8692;SRR=40;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:38:18,0,5,3,11:18:594:0,5,3,11:0,147,117,375:-25.0796,-30.4981,-78.5468,-27.0646,-75.0855,-73.5803,-20.8616,-68.9219,-65.4623,-68.0189,0,-48.1052,-44.6553,-38.4752,-44.7939 0|0:25:12,0,3,1,8:12:394:0,3,1,8:0,92,39,263:-17.7152,-21.3276,-53.1864,-19.0607,-50.8955,-49.9924,-18.1129,-49.9769,-47.6868,-49.6759,0,-31.9198,-29.641,-28.7079,-29.5115 0|1:19:10,2,0,3,2:10:329:2,0,3,2:70,0,117,70:-6.63276,-3.94556,-29.426,-9.64306,-30.028,-35.7247,0,-20.3973,-26.096,-25.1929,-3.94443,-24.3297,-30.0269,-20.3962,-29.4249 dDocent_Contig_1337 36 . T C 618.708 . AB=0.0797927;ABP=1483.03;AC=0;AF=0;AN=6;AO=108;CIGAR=3X;DP=1500;DPB=1500;DPRA=0;EPP=66.0634;EPPR=875.507;GTI=0;LEN=1;MEANALT=11;MQM=33.7037;MQMR=57.2524;NS=3;NUMALT=3;ODDS=0;PAIRED=0.277778;PAIREDR=0.244802;PAO=0;PQA=0;PQR=0;PRO=0;QA=4144;QR=40414;RO=1058;RPL=0;RPP=237.529;RPPR=2283.09;RPR=108;RUN=1;SAF=82;SAP=66.0634;SAR=26;SRF=855;SRP=875.507;SRR=203;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:535:398,31,40,35:398:14975:31,40,35:1206,1449,1266:0,-39.7444,-1248.98,-5.17167,-1143.68,-1211.7,-16.7025,-1155.21,-1120.65,-1224.74 0|0:479:334,42,44,37:334:12772:42,44,37:1539,1602,1310:-26.8271,-43.6038,-1071.22,0,-956.505,-1027.04,-20.7859,-977.287,-933.715,-1049.93 0|0:486:326,35,45,43:326:12667:35,45,43:1399,1704,1530:-38.5666,-52.8679,-1078.82,0,-952.666,-1022.96,-12.6193,-965.28,-912.429,-1036.18 dDocent_Contig_1338 64 . G A 266.188 . AB=0.384615;ABP=6.01695;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=65;DPB=65;DPRA=1.33333;EPP=24.725;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=399;QR=2166;RO=55;RPL=10;RPP=24.725;RPPR=122.441;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:977:0:0:0,-7.52575,-88.2291 0/0:14:14,0:14:558:0:0:0,-4.21442,-50.5638 0/1:26:16,10:16:631:10:399:-28.4428,0,-49.2965 dDocent_Contig_1339 146 . G A 848.26 . AB=0.0672269;ABP=196.6;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X4M;DP=119;DPB=119;DPRA=0;EPP=20.3821;EPPR=170.214;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=301;QR=2997;RO=77;RPL=0;RPP=20.3821;RPPR=170.214;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=170.214;SRR=77;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:25:20,4,1:20:774:4,1:158,39:-6.98528,0,-62.3622,-9.801,-60.3603,-73.0625 0|1:31:22,4,5:22:860:4,5:156,183:-8.31302,-2.10166,-71.6206,0,-57.8803,-69.1983 0|1:63:35,26,2:35:1363:26,2:1039,79:-75.0495,0,-104.175,-79.0853,-105.501,-190.484 dDocent_Contig_1340 15 . G A 294.702 . AB=0.241379;ABP=36.7056;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=33.4109;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=570;QR=1738;RO=44;RPL=0;RPP=33.4109;RPPR=98.5551;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:10,3:10:397:3:121:-7.36681,0,-32.1742 0/1:10:7,3:7:280:3:122:-8.36219,0,-22.5604 0/1:35:27,8:27:1061:8:327:-19.2641,0,-85.2428 dDocent_Contig_1342 31 . G T 31.8876 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=28;DPB=28;DPRA=0.666667;EPP=7.35324;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=1001;RO=26;RPL=0;RPP=7.35324;RPPR=59.4686;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:478:0:0:0,-3.61236,-43.3726 0/0:9:9,0:9:328:0:0:0,-2.70927,-29.8639 0/1:7:5,2:5:195:2:75:-5.01238,0,-15.8165 dDocent_Contig_1343 7 . G A 208.697 . AB=0.342857;ABP=10.5174;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=43;DPB=43;DPRA=2.1875;EPP=9.52472;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1.5;MQM=36.1667;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=441;QR=1031;RO=30;RPL=0;RPP=29.068;RPPR=68.1545;RPR=12;RUN=1;SAF=9;SAP=9.52472;SAR=3;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:308:0:0:0,-2.40824,-28.0822 0/1:19:9,10:9:321:10:371:-22.6875,0,-23.5074 0/1:16:13,2:13:402:2:70:-0.62133,0,-31.8303 dDocent_Contig_1344 17 . A G 76.0134 . AB=0.239726;ABP=88.9173;AC=3;AF=0.5;AN=6;AO=35;CIGAR=1X;DP=146;DPB=146;DPRA=0;EPP=70.5741;EPPR=216.525;GTI=0;LEN=1;MEANALT=1.33333;MQM=18.0857;MQMR=58.5545;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0;PAIREDR=0.972727;PAO=0;PQA=0;PQR=0;PRO=0;QA=1238;QR=4310;RO=110;RPL=0;RPP=79.0118;RPPR=241.872;RPR=35;RUN=1;SAF=1;SAP=70.5741;SAR=34;SRF=107;SRP=216.525;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:38,15:38:1498:15:535:-7.59593,0,-116.504 0/1:46:37,9:37:1438:9:308:-1.30234,0,-115.833 0/1:47:35,11:35:1374:11:395:-3.49587,0,-104.753 dDocent_Contig_1345 7 . G A 154.129 . AB=0.175439;ABP=55.1637;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=57;DPB=57;DPRA=0;EPP=24.725;EPPR=102.898;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=0.956522;PAO=0;PQA=0;PQR=0;PRO=0;QA=377;QR=1476;RO=46;RPL=0;RPP=24.725;RPPR=102.898;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:18,2:18:601:2:67:-0.340877,0,-48.3717 0/1:12:10,1:10:346:1:39:-0.335407,0,-28.0234 0/1:25:18,7:18:529:7:271:-17.2306,0,-40.3577 dDocent_Contig_1346 15 . T A 195.499 . AB=0.236842;ABP=25.8679;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=141;DPB=141;DPRA=1.70312;EPP=26.8965;EPPR=283.13;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=434;QR=4570;RO=129;RPL=0;RPP=26.8965;RPPR=283.13;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=129;SRP=283.13;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:28,9:28:984:9:358:-21.0727,0,-77.3589 0/0:71:69,2:69:2452:2:76:0,-14.1583,-213.696 0/0:32:32,0:32:1134:0:0:0,-9.63296,-102.362 dDocent_Contig_1347 7 . G A 235.053 . AB=0.409091;ABP=4.58955;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=103;DPB=103;DPRA=0.891892;EPP=29.068;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=467;QR=3118;RO=91;RPL=0;RPP=29.068;RPPR=200.614;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:44:41,3:41:1423:3:116:0,-2.42761,-117.525 0/0:37:37,0:37:1307:0:0:0,-11.1381,-117.911 0/1:22:13,9:13:388:9:351:-25.3292,0,-28.5824 dDocent_Contig_1348 79 . G A 1197.01 . AB=0.378882;ABP=23.5246;AC=3;AF=0.5;AN=6;AO=61;CIGAR=1X;DP=161;DPB=161;DPRA=0;EPP=135.47;EPPR=220.158;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1920;QR=3249;RO=100;RPL=61;RPP=135.47;RPPR=220.158;RPR=0;RUN=1;SAF=61;SAP=135.47;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:34,12:34:1100:12:364:-19.2062,0,-85.4496 0/1:46:20,26:20:659:26:836:-61.6931,0,-45.775 0/1:69:46,23:46:1490:23:720:-44.3246,0,-113.614 dDocent_Contig_1350 7 . G T 94.4074 . AB=0.0526316;ABP=69.0688;AC=0;AF=0;AN=6;AO=4;CIGAR=1M1X3M;DP=157;DPB=154.2;DPRA=0;EPP=11.6962;EPPR=298.331;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=0.75;PAIREDR=0.801471;PAO=0;PQA=0;PQR=0;PRO=0;QA=58;QR=4930;RO=136;RPL=0;RPP=11.6962;RPPR=298.331;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=136;SRP=298.331;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:86:80,2,2:80:2926:2,2:73,22:0,-18.0357,-256.75,-22.7494,-255.98,-261.343 0|0:33:28,4,0:28:1009:4,0:142,0:-3.12763,0,-81.1153,-11.5565,-82.3194,-93.8871 0|0:38:28,6,2:28:995:6,2:222,36:-9.82534,0,-79.3869,-15.6483,-78.5658,-96.1286 dDocent_Contig_1351 209 . N G 113.038 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:78:-7.40278,-0.60206,0 1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0 dDocent_Contig_1352 43 . G A 346.997 . AB=0.340909;ABP=12.6832;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=59;DPB=59;DPRA=0;EPP=37.7539;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=605;QR=1673;RO=43;RPL=0;RPP=37.7539;RPPR=96.3836;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:14,1:14:544:1:41:0,-0.420883,-45.2024 0/1:33:24,9:24:930:9:334:-20.4692,0,-74.071 0/1:11:5,6:5:199:6:230:-17.7528,0,-14.9767 dDocent_Contig_1353 178 . C G 561.166 . AB=0.42;ABP=5.78978;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=48.6112;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=826;QR=1071;RO=29;RPL=21;RPP=48.6112;RPPR=65.983;RPR=0;RUN=1;SAF=0;SAP=48.6112;SAR=21;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:7,3:7:269:3:121:-8.26969,0,-21.5621 0/1:29:12,17:12:431:17:664:-51.3611,0,-30.3882 0/1:11:10,1:10:371:1:41:-0.783237,0,-30.4227 dDocent_Contig_1354 38 . T C 2070.39 . AB=0.301471;ABP=96.1281;AC=3;AF=0.5;AN=6;AO=82;CIGAR=1X;DP=272;DPB=272;DPRA=0;EPP=181.071;EPPR=415.59;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3262;QR=7532;RO=190;RPL=0;RPP=181.071;RPPR=415.59;RPR=82;RUN=1;SAF=82;SAP=181.071;SAR=0;SRF=190;SRP=415.59;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:103:90,13:90:3539:13:513:-15.5073,0,-287.547 0/1:86:54,32:54:2166:32:1274:-89.044,0,-169.23 0/1:83:46,37:46:1827:37:1475:-108.011,0,-139.65 dDocent_Contig_1355 11 . G A 670.739 . AB=0.6;ABP=6.48466;AC=1;AF=0.166667;AN=6;AO=24;CIGAR=1X;DP=92;DPB=92;DPRA=1.53846;EPP=55.1256;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=896;QR=2604;RO=68;RPL=0;RPP=55.1256;RPPR=150.67;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:620:0:0:0,-4.81648,-56.1324 0/0:36:36,0:36:1375:0:0:0,-10.8371,-124.008 0/1:40:16,24:16:609:24:896:-68.8978,0,-43.0963 dDocent_Contig_1356 35 . T G 2295.23 . AB=0.170098;ABP=875.554;AC=1;AF=0.166667;AN=6;AO=157;CIGAR=1X;DP=1708;DPB=1708;DPRA=2.35159;EPP=343.931;EPPR=3360.11;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.88535;PAIREDR=0.878396;PAO=0;PQA=0;PQR=0;PRO=0;QA=5654;QR=57631;RO=1546;RPL=0;RPP=343.931;RPPR=3360.11;RPR=157;RUN=1;SAF=157;SAP=343.931;SAR=0;SRF=1546;SRP=3360.11;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:923:765,157:765:28283:157:5654:-231.046,0,-2265.78 0/0:638:637,0:637:23915:0:0:0,-191.756,-2150.65 0/0:147:144,0:144:5433:0:0:0,-43.3483,-488.777 dDocent_Contig_1358 26 . G A 781.765 . AB=0.459016;ABP=3.90025;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X;DP=61;DPB=61;DPRA=0;EPP=63.8115;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1122;QR=1327;RO=33;RPL=0;RPP=63.8115;RPPR=74.6689;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:12,9:12:477:9:356:-26.0794,0,-36.9592 0/1:23:15,8:15:611:8:319:-22.1514,0,-48.4038 0/1:17:6,11:6:239:11:447:-35.4686,0,-16.7657 dDocent_Contig_1359 7 . G T 242.774 . AB=0.209877;ABP=62.2298;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=1X;DP=109;DPB=109;DPRA=0;EPP=46.4397;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=662;QR=3081;RO=89;RPL=0;RPP=46.4397;RPPR=196.271;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:33,10:33:1244:10:387:-22.2434,0,-99.3091 0/0:28:25,3:25:883:3:89:0,-0.128591,-71.4728 0/1:38:31,7:31:954:7:186:-5.5558,0,-74.6874 dDocent_Contig_1361 13 . T G 30.9445 . 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G T 181.381 . AB=0.230769;ABP=27.5646;AC=3;AF=0.5;AN=6;AO=9;CIGAR=2X2M2X1M1X;DP=39;DPB=39;DPRA=0;EPP=22.5536;EPPR=44.6459;GTI=0;LEN=1;MEANALT=1.66667;MQM=39.8889;MQMR=58.0435;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.956522;PAO=0;PQA=0;PQR=0;PRO=0;QA=327;QR=875;RO=23;RPL=0;RPP=22.5536;RPPR=52.9542;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=22;SRP=44.6459;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:12:9,0,3:9:347:0,3:0,102:-5.71341,-8.42268,-36.9568,0,-28.8802,-27.9771 0|1:17:7,6,4:7:269:6,4:222,149:-13.9628,0,-18.0639,-6.71909,-10.5242,-25.3597 0|1:10:7,1,2:7:259:1,2:39,76:-3.98309,-2.96619,-23.8508,0,-18.0555,-20.5762 dDocent_Contig_1379 13 . T A 800.659 . AB=0.361111;ABP=15.074;AC=2;AF=0.333333;AN=6;AO=26;CIGAR=1X1M1X2M;DP=72;DPB=72.4;DPRA=0;EPP=51.1168;EPPR=61.6401;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0.666667;PQA=0;PQR=0;PRO=0.666667;QA=1021;QR=1061;RO=27;RPL=0;RPP=59.4686;RPPR=61.6401;RPR=26;RUN=1;SAF=25;SAP=51.1168;SAR=1;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:33:10,2,9,10:10:394:2,9,10:80,344,384:-28.5162,-25.3859,-57.2038,-3.30083,-29.5833,-33.0142,0,-26.2836,-4.20089,-29.4135 1|0:13:1,0,8,3:1:39:0,8,3:0,320,116:-32.4956,-32.7967,-36.0038,-6.38485,-9.60422,-7.19598,-23.2642,-26.4721,0,-25.569 0|1:26:16,0,9,1:16:628:0,9,1:0,357,39:-24.5768,-29.3933,-81.0394,0,-51.6505,-48.9413,-26.1881,-77.8337,-48.4448,-77.5326 dDocent_Contig_1381 80 . T G 116.949 . AB=0.242424;ABP=22.0271;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=61;DPB=61;DPRA=0.589286;EPP=20.3821;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=272;QR=1751;RO=53;RPL=8;RPP=20.3821;RPPR=118.098;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:954:0:0:0,-8.42884,-86.1719 0/1:14:10,4:10:304:4:138:-8.54598,0,-23.442 0/1:19:15,4:15:493:4:134:-6.67176,0,-38.9645 dDocent_Contig_1382 18 . A G 129.311 . AB=0.21875;ABP=24.9965;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=76;DPB=76;DPRA=2.03333;EPP=20.3821;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=307;QR=2667;RO=68;RPL=0;RPP=20.3821;RPPR=150.67;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:28,1:28:1099:1:40:0,-4.73419,-95.2093 0/0:15:15,0:15:586:0:0:0,-4.51545,-53.0808 0/1:32:25,7:25:982:7:267:-14.755,0,-79.0448 dDocent_Contig_1383 57 . G A 66.9703 . AB=0.25;ABP=11.6962;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=52;DPB=52;DPRA=0.888889;EPP=11.6962;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=141;QR=1721;RO=48;RPL=4;RPP=11.6962;RPPR=107.241;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:12,4:12:434:4:141:-8.2199,0,-34.5852 0/0:24:24,0:24:868:0:0:0,-7.22472,-78.4415 0/0:12:12,0:12:419:0:0:0,-3.61236,-38.0407 dDocent_Contig_1384 8 . T C 3146.56 . AB=0.755102;ABP=86.1024;AC=3;AF=0.5;AN=6;AO=111;CIGAR=1X;DP=147;DPB=147;DPRA=0;EPP=244.044;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.864865;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4040;QR=1078;RO=36;RPL=0;RPP=244.044;RPPR=81.1833;RPR=111;RUN=1;SAF=111;SAP=244.044;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:66:10,56:10:331:56:2072:-166.851,0,-10.2436 0/1:63:20,43:20:619:43:1543:-120.166,0,-37.0347 0/1:18:6,12:6:128:12:425:-33.1621,0,-6.31388 dDocent_Contig_1385 7 . G A 319.795 . AB=0.149701;ABP=181.006;AC=2;AF=0.333333;AN=6;AO=33;CIGAR=1X;DP=291;DPB=291;DPRA=0;EPP=74.6689;EPPR=532.987;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=59.2738;NS=3;NUMALT=1;ODDS=0;PAIRED=0.878788;PAIREDR=0.936508;PAO=0;PQA=0;PQR=0;PRO=0;QA=1249;QR=8392;RO=252;RPL=0;RPP=74.6689;RPPR=550.221;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=250;SRP=532.987;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:106:92,12:92:3181:12:459:-10.1439,0,-254.255 0/1:61:48,13:48:1686:13:482:-25.3585,0,-133.565 0/0:124:112,8:112:3525:8:308:0,-8.2796,-289.358 dDocent_Contig_1386 98 . N T 1553.2 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=52;CIGAR=1X;DP=52;DPB=52;DPRA=0;EPP=115.927;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1710;QR=0;RO=0;RPL=52;RPP=115.927;RPPR=0;RPR=0;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:27:0,27:0:0:27:878:-79.3224,-8.12781,0 1/1:11:0,11:0:0:11:360:-32.7169,-3.31133,0 1/1:14:0,14:0:0:14:472:-42.8035,-4.21442,0 dDocent_Contig_1387 7 . G A 220.734 . AB=0.244444;ABP=28.5372;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=63;DPB=63;DPRA=1.25;EPP=26.8965;EPPR=113.755;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=425;QR=1781;RO=51;RPL=0;RPP=26.8965;RPPR=113.755;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:649:0:0:0,-5.41854,-58.7354 0/1:18:13,5:13:488:5:194:-12.4143,0,-38.8444 0/1:27:20,6:20:644:6:231:-13.182,0,-50.2944 dDocent_Contig_1388 36 . C T 137.954 . AB=0.195122;ABP=36.112;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=92;DPB=92;DPRA=0.401961;EPP=20.3821;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=321;QR=3347;RO=84;RPL=0;RPP=20.3821;RPPR=185.414;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:51:51,0:51:2024:0:0:0,-15.3525,-182.356 0/1:25:20,5:20:800:5:199:-10.7622,0,-64.7884 0/1:16:13,3:13:523:3:122:-6.55601,0,-42.6007 dDocent_Contig_1389 87 . C T 676.139 . AB=0.482143;ABP=3.16541;AC=1;AF=0.166667;AN=6;AO=29;CIGAR=1X;DP=134;DPB=134;DPRA=0.895833;EPP=65.983;EPPR=231.015;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1025;QR=3616;RO=105;RPL=29;RPP=65.983;RPPR=231.015;RPR=0;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:29,27:29:1004:27:952:-69.1368,0,-73.8153 0/0:30:28,2:28:969:2:73:0,-2.0996,-80.5928 0/0:48:48,0:48:1643:0:0:0,-14.4494,-148.161 dDocent_Contig_1391 203 . T G 34.5375 . AB=0.25;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=37;DPB=37;DPRA=0.551724;EPP=7.35324;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1265;RO=35;RPL=2;RPP=7.35324;RPPR=79.0118;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=79.0118;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2388 0/0:7:7,0:7:257:0:0:0,-2.10721,-23.484 0/1:8:6,2:6:220:2:81:-5.27749,0,-17.7472 dDocent_Contig_1393 12 . T C 921.531 . AB=0.0483871;ABP=662.017;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X3M;DP=372;DPB=372;DPRA=0;EPP=42.0968;EPPR=643.595;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=709;QR=11538;RO=295;RPL=0;RPP=42.0968;RPPR=643.595;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=295;SRP=643.595;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:194:151,33,10:151:5906:33,10:1286,391:-60.2371,0,-475.621,-73.5486,-453.411,-556.095 0|1:92:76,8,7:76:2941:8,7:315,278:-3.0491,0,-239.177,-3.02761,-218.698,-242.506 0|1:86:68,17,1:68:2691:17,1:667,40:-34.3769,0,-216.341,-51.5515,-218.163,-272.716 dDocent_Contig_1394 98 . N C 13710.5 . AB=0.141414;ABP=113.58;AC=6;AF=1;AN=6;AO=43;CIGAR=2M1I10X;DP=508;DPB=591;DPRA=0;EPP=96.3836;EPPR=0;GTI=0;LEN=1;MEANALT=8.33333;MQM=46.7907;MQMR=0;NS=3;NUMALT=3;ODDS=0;PAIRED=0.209302;PAIREDR=0;PAO=119;PQA=3790;PQR=3790;PRO=119;QA=1539;QR=0;RO=0;RPL=43;RPP=96.3836;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=96.3836;SAR=43;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:99:0,7,72,14:0:0:7,72,14:255,2598,499:-249.358,-231.274,-229.167,-37.6276,-19.6717,-15.9534,-211.34,-193.26,0,-207.126 1|1:177:0,0,151,10:0:0:0,151,10:0,5414,359:-486.548,-486.548,-486.548,-45.4555,-45.4555,0,-459.862,-459.862,-18.9269,-456.852 1|1:232:0,5,196,19:0:0:5,196,19:170,7094,681:-636.67,-622.893,-621.388,-59.0019,-45.2556,0,-586.552,-572.776,-9.10974,-580.832 dDocent_Contig_1395 9 . T C 2624.67 . AB=0.734177;ABP=40.64;AC=4;AF=0.666667;AN=6;AO=89;CIGAR=1X;DP=112;DPB=112;DPRA=0;EPP=196.271;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3291;QR=852;RO=23;RPL=0;RPP=196.271;RPPR=52.9542;RPR=89;RUN=1;SAF=89;SAP=196.271;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:33:2,31:2:77:31:1185:-99.6376,-2.62485,0 0/1:47:14,33:14:513:33:1194:-93.5948,0,-32.357 0/1:32:7,25:7:262:25:912:-72.7572,0,-14.3045 dDocent_Contig_1396 48 . C T 51.2543 . AB=0.2;ABP=14.7363;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=47;DPB=47;DPRA=0.9375;EPP=9.52472;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=1768;RO=44;RPL=0;RPP=9.52472;RPPR=98.5551;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:680:0:0:0,-5.11751,-61.5263 0/0:15:15,0:15:605:0:0:0,-4.51545,-54.7879 0/1:15:12,3:12:483:3:123:-6.94934,0,-39.3053 dDocent_Contig_1397 89 . C A 210.826 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=74;DPB=74;DPRA=0.642857;EPP=22.5536;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=311;QR=2214;RO=65;RPL=9;RPP=22.5536;RPPR=144.156;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:517:0:0:0,-4.51545,-46.8579 0/0:41:41,0:41:1391:0:0:0,-12.3422,-125.487 0/1:18:9,9:9:306:9:311:-22.9065,0,-22.4513 dDocent_Contig_1398 15 . T G 26405.3 . AB=0.761601;ABP=656.28;AC=2;AF=0.333333;AN=6;AO=856;CIGAR=1X;DP=1810;DPB=1810;DPRA=0;EPP=1861.79;EPPR=2074.59;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.973131;PAIREDR=0.95283;PAO=0;PQA=0;PQR=0;PRO=0;QA=33819;QR=37869;RO=954;RPL=0;RPP=1861.79;RPPR=2074.59;RPR=856;RUN=1;SAF=856;SAP=1861.79;SAR=0;SRF=954;SRP=2074.59;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:711:692,19:692:27433:19:738:0,-147.291,-2399.9 0/1:917:207,710:207:8222:710:28008:-2242.39,0,-463.509 0/1:182:55,127:55:2214:127:5073:-401.66,0,-144.642 dDocent_Contig_1399 7 . G A 281.098 . AB=0.264151;ABP=28.6173;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=86;DPB=86;DPRA=0;EPP=35.5824;EPPR=152.842;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=554;QR=2355;RO=69;RPL=0;RPP=35.5824;RPPR=152.842;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:20,5:20:705:5:189:-9.84951,0,-56.2365 0/1:28:18,9:18:643:9:330:-21.7831,0,-49.9391 0/0:33:31,1:31:1007:1:35:0,-6.36426,-87.524 dDocent_Contig_1402 107 . N A 1664.51 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=57;CIGAR=1X;DP=57;DPB=57;DPRA=0;EPP=126.784;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1834;QR=0;RO=0;RPL=0;RPP=126.784;RPPR=0;RPR=57;RUN=1;SAF=0;SAP=126.784;SAR=57;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:24:0,24:0:0:24:777:-70.2327,-7.22472,0 1/1:10:0,10:0:0:10:315:-28.6586,-3.0103,0 1/1:23:0,23:0:0:23:742:-67.0824,-6.92369,0 dDocent_Contig_1404 10 . G A 33.2658 . AB=0.666667;ABP=3.73412;AC=1;AF=0.5;AN=2;AO=2;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=7.35324;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1;MQM=23;MQMR=10;NS=1;NUMALT=1;ODDS=4.38487;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=35;RO=1;RPL=0;RPP=7.35324;RPPR=5.18177;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=5.18177;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 0/1:3:1,2:1:35:2:70:-3.41667,0,-0.0956757 dDocent_Contig_1405 17 . G C 52.4702 . AB=0.362745;ABP=19.7008;AC=3;AF=0.5;AN=6;AO=88;CIGAR=3M1X;DP=219;DPB=219;DPRA=0;EPP=194.1;EPPR=183.243;GTI=0;LEN=1;MEANALT=4.33333;MQM=7;MQMR=7.79518;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3492;QR=3260;RO=83;RPL=0;RPP=194.1;RPPR=183.243;RPR=88;RUN=1;SAF=88;SAP=194.1;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:102:36,22,4,37:36:1407:22,4,37:855,145,1484:-1.32933,-4.93384,-15.5524,-10.8521,-20.8611,-26.8876,0,-10.0153,-15.9294,-6.10503 1|1:90:34,11,2,42:34:1333:11,2,42:434,76,1643:-5.04047,-8.95423,-16.8144,-14.6183,-19.4683,-25.1855,-1.48699,-6.32111,-11.9861,0 0|0:27:13,3,2,9:13:520:3,2,9:120,77,365:0,-2.92695,-6.29831,-3.2559,-6.54391,-6.92829,-0.953934,-4.24195,-4.5709,-2.51912 dDocent_Contig_1406 35 . A C 31.6793 . AB=0.129032;ABP=40.0654;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=126;DPB=126;DPRA=0.652632;EPP=11.6962;EPPR=267.93;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=4839;RO=122;RPL=0;RPP=11.6962;RPPR=267.93;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=122;SRP=267.93;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:59:59,0:59:2319:0:0:0,-17.7608,-208.875 0/0:36:36,0:36:1431:0:0:0,-10.8371,-129.042 0/1:31:27,4:27:1089:4:155:-4.99154,0,-88.9629 dDocent_Contig_1407 22 . T A 38.5263 . AB=0.166667;ABP=20.3821;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=92;DPB=92;DPRA=0.486486;EPP=9.52472;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=3533;RO=89;RPL=0;RPP=9.52472;RPPR=196.271;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:47:47,0:47:1878:0:0:0,-14.1484,-169.224 0/0:27:27,0:27:1064:0:0:0,-8.12781,-96.0501 0/1:18:15,3:15:591:3:119:-5.67647,0,-48.1073 dDocent_Contig_1408 87 . C G 1126.34 . AB=0.589744;ABP=8.46682;AC=3;AF=0.5;AN=6;AO=46;CIGAR=1X;DP=78;DPB=78;DPRA=0;EPP=102.898;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1563;QR=1094;RO=32;RPL=46;RPP=102.898;RPPR=72.4974;RPR=0;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:12,11:12:411:11:365:-26.2478,0,-30.3953 0/1:39:16,23:16:545:23:787:-59.4065,0,-37.633 0/1:16:4,12:4:138:12:411:-32.5025,0,-7.94392 dDocent_Contig_1409 7 . G A 83.5315 . AB=0.189189;ABP=34.0565;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X1M1X;DP=56;DPB=56;DPRA=0.973684;EPP=18.2106;EPPR=100.904;GTI=0;LEN=1;MEANALT=1;MQM=42.8571;MQMR=58.1429;NS=3;NUMALT=1;ODDS=0;PAIRED=0.285714;PAIREDR=0.959184;PAO=0;PQA=0;PQR=0;PRO=0;QA=270;QR=1721;RO=49;RPL=0;RPP=18.2106;RPPR=109.412;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=48;SRP=100.904;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:13,2:13:428:2:77:-2.79369,0,-34.3165 0|0:19:19,0:19:714:0:0:0,-5.71957,-60.0684 0|1:22:17,5:17:579:5:193:-9.05966,0,-45.8046 dDocent_Contig_1410 50 . T C 2604.75 . AB=0.611765;ABP=12.2327;AC=4;AF=0.666667;AN=6;AO=87;CIGAR=2X;DP=122;DPB=122;DPRA=0;EPP=191.928;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3290;QR=1348;RO=35;RPL=87;RPP=191.928;RPPR=79.0118;RPR=0;RUN=1;SAF=87;SAP=191.928;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:49:20,29:20:774:29:1098:-84.3621,0,-55.2353 1|1:37:2,35:2:78:35:1335:-113.028,-3.73464,0 0|1:36:13,23:13:496:23:857:-66.6079,0,-34.1499 dDocent_Contig_1411 1 . N G 392.843 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=26.8965;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=425;QR=0;RO=0;RPL=0;RPP=26.8965;RPPR=0;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:5:0,5:0:0:5:185:-17.0075,-1.50515,0 1/1:6:0,6:0:0:6:240:-21.9757,-1.80618,0 dDocent_Contig_1412 15 . T C 494.986 . AB=0.25;ABP=31.2394;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X3M5I1M2X2M;DP=72;DPB=85;DPRA=0;EPP=31.2394;EPPR=102.898;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=514;QR=1807;RO=46;RPL=0;RPP=31.2394;RPPR=102.898;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:20:8,4,8,0:8:314:4,8,0:157,318,0:-23.7769,-13.2741,-37.8911,0,-12.9108,-23.4153,-26.1852,-39.0952,-25.8235,-52.0074 0|1:33:23,1,0,9:23:897:1,0,9:41,0,354:-22.1801,-25.718,-99.1465,-29.1038,-99.4475,-102.832,0,-70.328,-73.7129,-71.0036 0|1:19:15,0,0,4:15:596:0,0,4:0,0,160:-9.06444,-13.5799,-62.6452,-13.5799,-62.6452,-62.6452,0,-49.4643,-49.4643,-48.2602 dDocent_Contig_1413 46 . C A 80.2533 . AB=0.235294;ABP=13.3567;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=88;DPB=88;DPRA=0.478873;EPP=11.6962;EPPR=176.831;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=3261;RO=84;RPL=0;RPP=11.6962;RPPR=176.831;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:53:53,0:53:2037:0:0:0,-15.9546,-183.524 0/1:17:13,4:13:517:4:162:-9.84924,0,-41.7575 0/0:18:18,0:18:707:0:0:0,-5.41854,-63.9553 dDocent_Contig_1414 42 . G T 18348.9 . AB=0.410882;ABP=113.315;AC=3;AF=0.5;AN=6;AO=657;CIGAR=2X;DP=1599;DPB=1600;DPRA=0;EPP=1327.34;EPPR=1622.22;GTI=0;LEN=1;MEANALT=3.33333;MQM=59.9361;MQMR=59.5679;NS=3;NUMALT=2;ODDS=0;PAIRED=0.585997;PAIREDR=0.552693;PAO=0;PQA=0;PQR=0;PRO=0;QA=25529;QR=32262;RO=854;RPL=24;RPP=1228.82;RPPR=1433.28;RPR=633;RUN=1;SAF=645;SAP=1327.34;SAR=12;SRF=828;SRP=1638.49;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:552:282,21,249:282:10650:21,249:817,9619:-704.996,-722.749,-1589.19,0,-805.618,-797.8 0|1:470:259,32,175:259:9699:32,175:1249,6855:-485.638,-460.942,-1239.42,0,-685.45,-735.435 0|1:577:313,28,233:313:11913:28,233:1102,9055:-649.78,-653.353,-1609.85,0,-874.276,-894.787 dDocent_Contig_1416 7 . G A 180.224 . AB=0.234043;ABP=31.8863;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=47;DPB=47;DPRA=0;EPP=4.78696;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=45.4545;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=413;QR=1241;RO=36;RPL=0;RPP=26.8965;RPPR=81.1833;RPR=11;RUN=1;SAF=7;SAP=4.78696;SAR=4;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:8,2:8:274:2:80:-4.01233,0,-21.976 0/1:28:20,8:20:737:8:294:-17.5099,0,-58.2269 0/1:9:8,1:8:230:1:39:-1.18729,0,-18.2717 dDocent_Contig_1417 75 . C A 2996.33 . AB=0.781609;ABP=62.9379;AC=4;AF=0.666667;AN=6;AO=98;CIGAR=1X;DP=117;DPB=117;DPRA=0;EPP=215.815;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3650;QR=707;RO=19;RPL=98;RPP=215.815;RPPR=44.2683;RPR=0;RUN=1;SAF=98;SAP=215.815;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:5,23:5:186:23:833:-66.8511,0,-8.67242 0/1:59:14,45:14:521:45:1704:-135.833,0,-29.4681 1/1:30:0,30:0:0:30:1113:-100.472,-9.0309,0 dDocent_Contig_1418 85 . G C 1734.55 . AB=0.758065;ABP=38.8746;AC=4;AF=0.666667;AN=6;AO=64;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=141.985;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2202;QR=559;RO=16;RPL=64;RPP=141.985;RPPR=37.7539;RPR=0;RUN=1;SAF=64;SAP=141.985;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:8,22:8:279:22:755:-59.2376,0,-16.4181 1/1:18:1,17:1:35:17:584:-49.3863,-1.91991,0 0/1:32:7,25:7:245:25:863:-68.3537,0,-12.7583 dDocent_Contig_1419 18 . G T 1585.89 . AB=0.509259;ABP=3.09072;AC=2;AF=0.333333;AN=6;AO=57;CIGAR=1X;DP=158;DPB=158;DPRA=0;EPP=126.784;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2236;QR=4013;RO=101;RPL=0;RPP=126.784;RPPR=222.329;RPR=57;RUN=1;SAF=57;SAP=126.784;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:10,39:10:394:39:1539:-124.008,0,-21.0678 0/1:59:43,16:43:1695:16:617:-38.1038,0,-135.018 0/0:50:48,2:48:1924:2:80:0,-7.45992,-165.769 dDocent_Contig_1420 32 . T C 3361.5 . AB=0.558252;ABP=9.08199;AC=3;AF=0.5;AN=6;AO=115;CIGAR=1X;DP=206;DPB=206;DPRA=0;EPP=252.73;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4477;QR=3257;RO=91;RPL=0;RPP=252.73;RPPR=200.614;RPR=115;RUN=1;SAF=115;SAP=252.73;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:20,37:20:695:37:1459:-114.402,0,-45.7056 0/1:80:42,38:42:1475:38:1478:-109.192,0,-108.942 0/1:69:29,40:29:1087:40:1540:-118.079,0,-77.3657 dDocent_Contig_1421 58 . A G 73.4097 . AB=0.266667;ABP=10.1038;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=75;DPB=75;DPRA=0.709677;EPP=16.0391;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=219;QR=2551;RO=69;RPL=6;RPP=16.0391;RPPR=152.842;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:27,2:27:989:2:71:0,-1.98879,-82.5617 0/0:31:31,0:31:1142:0:0:0,-9.33193,-103.075 0/1:15:11,4:11:420:4:148:-9.16486,0,-33.6321 dDocent_Contig_1422 64 . T C 84.8289 . AB=0.192308;ABP=24.391;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=89;DPB=89;DPRA=0.825397;EPP=13.8677;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=194;QR=3075;RO=84;RPL=5;RPP=13.8677;RPPR=185.414;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:21,5:21:780:5:194:-10.0058,0,-62.6979 0/0:15:15,0:15:545:0:0:0,-4.51545,-49.3771 0/0:48:48,0:48:1750:0:0:0,-14.4494,-157.778 dDocent_Contig_1426 1 . N G 69.6324 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=9;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=318;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:240:-4.94815,-1.80618,0 1/1:2:0,2:0:0:2:78:-1.70926,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_1427 1 . N T 66.4848 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_1430 7 . C G 2176.68 . AB=0.421296;ABP=14.6317;AC=3;AF=0.5;AN=6;AO=91;CIGAR=1X;DP=216;DPB=216;DPRA=0;EPP=200.614;EPPR=267.93;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3189;QR=4658;RO=122;RPL=0;RPP=200.614;RPPR=267.93;RPR=91;RUN=1;SAF=91;SAP=200.614;SAR=0;SRF=122;SRP=267.93;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:82:51,30:51:1940:30:1044:-69.4926,0,-150.082 0/1:66:30,36:30:1152:36:1346:-101.563,0,-84.1119 0/1:68:41,25:41:1566:25:799:-52.1356,0,-121.154 dDocent_Contig_1431 23 . C A 136.527 . AB=0.241379;ABP=19.8579;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=82;DPB=82;DPRA=1.09434;EPP=18.2106;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=265;QR=2960;RO=75;RPL=0;RPP=18.2106;RPPR=165.871;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:982:0:0:0,-7.52575,-88.6762 0/0:28:28,0:28:1116:0:0:0,-8.42884,-100.724 0/1:29:22,7:22:862:7:265:-15.4766,0,-69.1564 dDocent_Contig_1432 152 . G C 3317.19 . AB=0.693694;ABP=39.1819;AC=4;AF=0.666667;AN=6;AO=109;CIGAR=1X2M;DP=147;DPB=147;DPRA=0;EPP=239.701;EPPR=65.983;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4181;QR=1137;RO=29;RPL=0;RPP=239.701;RPPR=65.983;RPR=109;RUN=1;SAF=0;SAP=239.701;SAR=109;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:36:3,1,32:3:112:1,32:40,1243:-101.689,-99.2971,-108.164,-0.483089,-6.33125,0 0|1:52:10,7,34:10:390:7,34:257,1310:-104.569,-86.5797,-116.53,0,-11.0771,-21.839 0|1:59:16,0,43:16:635:0,43:0,1628:-128.984,-133.8,-186.079,0,-52.6701,-39.7259 dDocent_Contig_1433 71 . C T 1499.78 . AB=0.66;ABP=14.1282;AC=4;AF=0.666667;AN=6;AO=54;CIGAR=1X;DP=71;DPB=71;DPRA=0;EPP=120.27;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1862;QR=599;RO=17;RPL=54;RPP=120.27;RPPR=39.9253;RPR=0;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:8,12:8:281:12:422:-32.2949,0,-19.6098 0/1:30:9,21:9:318:21:713:-55.4538,0,-19.9301 1/1:21:0,21:0:0:21:727:-65.7519,-6.32163,0 dDocent_Contig_1434 26 . C A 234.241 . AB=0.277778;ABP=18.4519;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=120;DPB=120;DPRA=0.857143;EPP=24.725;EPPR=241.872;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=397;QR=4408;RO=110;RPL=0;RPP=24.725;RPPR=241.872;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=110;SRP=241.872;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:35:35,0:35:1378:0:0:0,-10.536,-124.275 0/0:49:49,0:49:1984:0:0:0,-14.7505,-178.748 0/1:36:26,10:26:1046:10:397:-25.248,0,-83.5954 dDocent_Contig_1435 20 . C T 65.6724 . AB=0.258065;ABP=18.771;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=51;DPB=51;DPRA=0;EPP=22.5536;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=27.7778;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=351;QR=1662;RO=42;RPL=0;RPP=22.5536;RPPR=94.2121;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:14,3:14:559:3:118:-3.23647,0,-45.5356 0/1:14:9,5:9:353:5:198:-6.84533,0,-27.9165 0/0:20:19,1:19:750:1:35:0,-2.87443,-64.6774 dDocent_Contig_1436 139 . G T 36.9016 . AB=0.166667;ABP=20.3821;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=63;DPB=63;DPRA=0.869565;EPP=11.6962;EPPR=13.6468;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.440678;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=2181;RO=59;RPL=4;RPP=11.6962;RPPR=131.127;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=21;SRP=13.6468;SRR=38;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:15,3:15:570:3:114:-5.21294,0,-46.2173 0/0:23:23,0:23:857:0:0:0,-6.92369,-77.4406 0/0:22:21,1:21:754:1:41:0,-2.52809,-64.0697 dDocent_Contig_1437 14 . C G 850.323 . AB=0.28;ABP=34.5401;AC=1;AF=0.166667;AN=6;AO=21;CIGAR=3M1I1M1X1M1X3M;DP=119;DPB=126.6;DPRA=0;EPP=48.6112;EPPR=96.3836;GTI=0;LEN=1;MEANALT=5.5;MQM=59;MQMR=60;NS=3;NUMALT=9;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=801;QR=1656;RO=43;RPL=0;RPP=48.6112;RPPR=96.3836;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:41:12,0,3,19,0,3,2,0,0,0:12:465:0,3,19,0,3,2,0,0,0:0,120,724,0,120,71,0,0,0:-55.7697,-59.3821,-97.5837,-49.5403,-87.7428,-86.8397,0,-38.2056,-28.3635,-32.4861,-59.3821,-97.5837,-87.7428,-38.2056,-97.5837,-49.5951,-87.7976,-77.9565,-28.4184,-87.7976,-86.8945,-53.9392,-92.14,-82.2992,-32.7642,-92.14,-82.354,-91.5379,-59.3821,-97.5837,-87.7428,-38.2056,-97.5837,-87.7976,-92.14,-97.5837,-59.3821,-97.5837,-87.7428,-38.2056,-97.5837,-87.7976,-92.14,-97.5837,-97.5837,-59.3821,-97.5837,-87.7428,-38.2056,-97.5837,-87.7976,-92.14,-97.5837,-97.5837,-97.5837 0|0:44:17,3,2,0,5,1,11,3,0,0:17:653:3,2,0,5,1,11,3,0,0:117,76,0,90,39,313,119,0,0:-16.7536,-12.6609,-65.4094,-15.6514,-60.0979,-68.698,-21.8711,-66.3125,-69.3,-75.5142,-16.6429,-61.079,-64.0661,-70.2795,-68.7744,-18.6673,-63.1113,-66.0989,-72.3132,-67.0788,-72.0121,0,-44.4503,-47.4377,-53.6516,-48.4288,-50.4506,-50.3403,-16.3297,-60.7727,-63.7602,-69.9743,-64.7421,-66.7733,-48.1157,-69.0712,-21.8711,-66.3125,-69.3,-75.5142,-70.2795,-72.3132,-53.6516,-69.9743,-75.5142,-21.8711,-66.3125,-69.3,-75.5142,-70.2795,-72.3132,-53.6516,-69.9743,-75.5142,-75.5142 0|0:34:14,0,0,2,0,2,11,0,2,2:14:538:0,0,2,0,2,11,0,2,2:0,0,77,0,80,312,0,79,72:-18.0318,-22.2462,-66.4394,-22.2462,-66.4394,-66.4394,-15.9171,-60.1157,-60.1157,-59.5136,-22.2462,-66.4394,-66.4394,-60.1157,-66.4394,-15.6629,-59.8622,-59.8622,-53.5381,-59.8622,-59.2601,0,-44.1681,-44.1681,-37.8468,-44.1681,-37.5928,-40.8568,-22.2462,-66.4394,-66.4394,-60.1157,-66.4394,-59.8622,-44.1681,-66.4394,-16.0065,-60.2048,-60.2048,-53.8808,-60.2048,-53.6272,-37.9361,-60.2048,-59.6027,-16.908,-61.1039,-61.1039,-54.7801,-61.1039,-54.5265,-38.8368,-61.1039,-54.8692,-60.5018 dDocent_Contig_1439 15 . T C 80.1467 . AB=0.116667;ABP=79.5909;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X1M1X3M;DP=60;DPB=60;DPRA=0;EPP=18.2106;EPPR=107.241;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.714286;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=261;QR=1899;RO=48;RPL=0;RPP=18.2106;RPPR=107.241;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:25:19,4,2:19:756:4,2:144,68:-6.04201,0,-61.0973,-6.25313,-56.7919,-67.9315 0|1:24:20,1,3:20:789:1,3:40,118:-3.68128,-6.40515,-71.0219,0,-61.6162,-64.0085 0|1:11:9,0,2:9:354:0,2:0,75:-3.80901,-6.51828,-35.6507,0,-29.5105,-28.9084 dDocent_Contig_1440 65 . C T 77.0669 . AB=0.166667;ABP=31.9633;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=57;DPB=57;DPRA=2.22222;EPP=13.8677;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=2038;RO=52;RPL=5;RPP=13.8677;RPPR=115.927;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:535:0:0:0,-4.21442,-48.4881 0/1:30:25,5:25:978:5:202:-9.53059,0,-79.2898 0/0:13:13,0:13:525:0:0:0,-3.91339,-47.5974 dDocent_Contig_1441 17 . C A 217.898 . AB=0.285714;ABP=16.9698;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=42;DPB=42;DPRA=2.5;EPP=24.725;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.96875;PAO=0;PQA=0;PQR=0;PRO=0;QA=390;QR=1278;RO=32;RPL=0;RPP=24.725;RPPR=72.4974;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:9,3:9:357:3:120:-7.57495,0,-28.8794 0/1:23:16,7:16:639:7:270:-17.7378,0,-50.9207 0/0:7:7,0:7:282:0:0:0,-2.10721,-25.7524 dDocent_Contig_1443 149 . A G 102.395 . AB=0.206897;ABP=24.6501;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=64;DPB=64;DPRA=1.65714;EPP=16.0391;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=227;QR=2193;RO=58;RPL=0;RPP=16.0391;RPPR=128.956;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=128.956;SRR=58;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:879:0:0:0,-6.92369,-79.4292 0/1:29:23,6:23:865:6:227:-12.0635,0,-69.435 0/0:12:12,0:12:449:0:0:0,-3.61236,-40.7558 dDocent_Contig_1444 98 . N T 310.596 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=329;QR=0;RO=0;RPL=10;RPP=24.725;RPPR=0;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0 1/1:6:0,6:0:0:6:198:-18.1447,-1.80618,0 1/1:3:0,3:0:0:3:99:-9.23746,-0.90309,0 dDocent_Contig_1445 19 . A G 121.036 . AB=0.294118;ABP=9.26925;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=43;DPB=43;DPRA=1.30769;EPP=13.8677;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=1521;RO=38;RPL=0;RPP=13.8677;RPPR=85.5263;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:12,5:12:476:5:204:-13.6265,0,-38.0742 0/0:8:8,0:8:322:0:0:0,-2.40824,-29.3483 0/0:18:18,0:18:723:0:0:0,-5.41854,-65.3965 dDocent_Contig_1446 42 . A T 265.717 . AB=0.275;ABP=20.5992;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=2X;DP=113;DPB=113;DPRA=1.09589;EPP=26.8965;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=442;QR=4077;RO=102;RPL=0;RPP=26.8965;RPPR=224.5;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:40:29,11:29:1167:11:442:-28.0946,0,-93.2694 0|0:37:37,0:37:1479:0:0:0,-11.1381,-133.359 0|0:36:36,0:36:1431:0:0:0,-10.8371,-129.044 dDocent_Contig_1447 7 . G A 1157.18 . AB=0.431373;ABP=7.18293;AC=2;AF=0.333333;AN=6;AO=44;CIGAR=1X;DP=155;DPB=155;DPRA=0.962264;EPP=98.5551;EPPR=239.701;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1657;QR=3829;RO=109;RPL=0;RPP=98.5551;RPPR=239.701;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:21,26:21:781:26:984:-74.7217,0,-56.4672 0/1:55:36,18:36:1280:18:673:-44.5193,0,-99.1082 0/0:53:52,0:52:1768:0:0:0,-15.6536,-159.259 dDocent_Contig_1448 68 . G C 219.42 . AB=0.175676;ABP=70.6194;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=74;DPB=74;DPRA=0;EPP=31.2394;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.769231;PAIREDR=0.95082;PAO=0;PQA=0;PQR=0;PRO=0;QA=525;QR=2311;RO=61;RPL=13;RPP=31.2394;RPPR=135.47;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:30,3:30:1160:3:121:-1.34621,0,-94.7539 0/1:22:20,2:20:745:2:81:-1.06307,0,-60.7513 0/1:19:11,8:11:406:8:323:-23.7196,0,-31.168 dDocent_Contig_1449 28 . G A 47.7072 . AB=0.115385;ABP=69.8248;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=124;DPB=124;DPRA=2.45238;EPP=22.5536;EPPR=252.73;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=363;QR=4563;RO=115;RPL=0;RPP=22.5536;RPPR=252.73;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=115;SRP=252.73;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:811:0:0:0,-6.32163,-73.3068 0/0:51:48,3:48:1890:3:120:0,-4.16522,-159.126 0/1:52:46,6:46:1862:6:243:-6.59462,0,-152.125 dDocent_Contig_1450 131 . C T 54.0145 . AB=0.2;ABP=18.6449;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=46;DPB=46;DPRA=1.53846;EPP=11.6962;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=1376;RO=42;RPL=0;RPP=11.6962;RPPR=94.2121;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=94.2121;SRR=42;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:16,4:16:540:4:140:-6.92433,0,-42.8994 0/0:16:16,0:16:519:0:0:0,-4.81648,-47.0204 0/0:10:10,0:10:317:0:0:0,-3.0103,-28.8372 dDocent_Contig_1452 144 . C T 80.7793 . AB=0.25;ABP=11.6962;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=40;DPB=40;DPRA=1.33333;EPP=11.6962;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=1261;RO=36;RPL=0;RPP=11.6962;RPPR=81.1833;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=81.1833;SRR=36;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:12,4:12:396:4:156:-9.60081,0,-31.134 0/0:9:9,0:9:314:0:0:0,-2.70927,-28.5927 0/0:15:15,0:15:551:0:0:0,-4.51545,-49.9228 dDocent_Contig_1453 59 . C A 89.5466 . AB=0.307692;ABP=7.18621;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=36;DPB=36;DPRA=1.13043;EPP=11.6962;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=1228;RO=32;RPL=4;RPP=11.6962;RPPR=72.4974;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:579:0:0:0,-4.51545,-52.4398 0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2579 0/1:13:9,4:9:361:4:159:-10.7786,0,-28.9413 dDocent_Contig_1454 209 . N G 76.8682 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 dDocent_Contig_1456 9 . G C 238.527 . AB=0.26087;ABP=25.858;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X2M1X;DP=67;DPB=67;DPRA=1.09524;EPP=29.068;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=450;QR=1995;RO=55;RPL=0;RPP=29.068;RPPR=122.441;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:21:21,0:21:779:0:0:0,-6.32163,-70.4335 0|1:22:19,3:19:698:3:114:-4.00956,0,-56.5225 0|1:24:15,9:15:518:9:336:-23.3646,0,-39.7138 dDocent_Contig_1458 19 . T G 563.624 . AB=0.338462;ABP=17.7429;AC=2;AF=0.333333;AN=6;AO=24;CIGAR=1X;DP=90;DPB=90;DPRA=0;EPP=55.1256;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=951;QR=2625;RO=66;RPL=0;RPP=55.1256;RPPR=146.327;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:23,2:23:922:2:76:0,-0.311493,-76.0708 0/1:27:22,5:22:862:5:195:-9.79585,0,-69.7624 0/1:38:21,17:21:841:17:680:-50.0888,0,-64.564 dDocent_Contig_1459 98 . N A 100.757 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=108;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_1461 33 . T G 246.421 . AB=0.185714;ABP=63.067;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=210;DPB=210;DPRA=1;EPP=31.2394;EPPR=430.79;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=0.969543;PAO=0;PQA=0;PQR=0;PRO=0;QA=521;QR=7747;RO=197;RPL=0;RPP=31.2394;RPPR=430.79;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=197;SRP=430.79;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:70:57,13:57:2240:13:521:-26.165,0,-180.711 0/0:64:64,0:64:2508:0:0:0,-19.2659,-225.881 0/0:76:76,0:76:2999:0:0:0,-22.8783,-270.004 dDocent_Contig_1462 111 . G T 56.5806 . AB=0.25;ABP=11.6962;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=71;DPB=71;DPRA=0.581818;EPP=11.6962;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=133;QR=2273;RO=67;RPL=0;RPP=11.6962;RPPR=148.499;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=148.499;SRR=67;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1024:0:0:0,-9.33193,-92.4581 0/1:16:12,4:12:417:4:133:-7.48196,0,-33.0467 0/0:24:24,0:24:832:0:0:0,-7.22472,-75.1987 dDocent_Contig_1463 71 . G A 2988.65 . AB=0.16092;ABP=89.8942;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X2M1X;DP=142;DPB=142;DPRA=0;EPP=33.4109;EPPR=44.2683;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=452;QR=634;RO=19;RPL=14;RPP=33.4109;RPPR=44.2683;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:48:5,6,37:5:168:6,37:189,1249:-101.315,-87.6236,-99.4276,-1.56813,0,-4.04987 0|0:55:11,0,44:11:363:0,44:0,1512:-119.819,-123.13,-152.477,0,-29.6791,-16.4338 1|0:39:3,8,28:3:103:8,28:263,886:-83.2488,-62.8939,-68.852,-12.8769,0,-12.8158 dDocent_Contig_1466 34 . G T 173.834 . AB=0.180328;ABP=57.1547;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=94;DPB=94;DPRA=0.924242;EPP=26.8965;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=428;QR=3188;RO=83;RPL=0;RPP=26.8965;RPPR=183.243;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1257:0:0:0,-9.93399,-113.413 0/1:45:37,8:37:1415:8:307:-14.4427,0,-114.076 0/1:16:13,3:13:516:3:121:-6.46351,0,-41.9721 dDocent_Contig_1467 107 . N T 62.694 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=66;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:66:-6.26831,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_1468 60 . G C 216.352 . AB=0.258621;ABP=32.3626;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=35.5824;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.953488;PAO=0;PQA=0;PQR=0;PRO=0;QA=485;QR=1450;RO=43;RPL=15;RPP=35.5824;RPPR=96.3836;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:16,7:16:531:7:219:-13.0929,0,-41.1831 0/1:24:19,5:19:641:5:163:-7.76658,0,-50.784 0/1:11:8,3:8:278:3:103:-6.29864,0,-22.0466 dDocent_Contig_1470 133 . A C 77.6467 . AB=0.227273;ABP=17.2236;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=72;DPB=72;DPRA=0.88;EPP=13.8677;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=173;QR=2254;RO=67;RPL=0;RPP=13.8677;RPPR=148.499;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=148.499;SRR=67;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:17,5:17:567:5:173:-9.28755,0,-44.7241 0/0:27:27,0:27:903:0:0:0,-8.12781,-81.5776 0/0:23:23,0:23:784:0:0:0,-6.92369,-70.8731 dDocent_Contig_1471 11 . T G 5635.87 . AB=0.898089;ABP=219.12;AC=4;AF=0.666667;AN=6;AO=177;CIGAR=1X;DP=193;DPB=193;DPRA=0;EPP=387.361;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6812;QR=644;RO=16;RPL=0;RPP=387.361;RPPR=37.7539;RPR=177;RUN=1;SAF=177;SAP=387.361;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:81:7,74:7:281:74:2865:-233.598,0,-1.27875 0/1:76:9,67:9:363:67:2561:-207.767,0,-10.156 1/1:36:0,36:0:0:36:1386:-124.996,-10.8371,0 dDocent_Contig_1472 24 . C T 579.401 . AB=0.215385;ABP=94.4794;AC=2;AF=0.333333;AN=6;AO=28;CIGAR=1X;DP=187;DPB=187;DPRA=1.14035;EPP=63.8115;EPPR=337.472;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.987342;PAO=0;PQA=0;PQR=0;PRO=0;QA=1109;QR=6229;RO=158;RPL=0;RPP=63.8115;RPPR=346.103;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=157;SRP=337.472;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:57:57,0:57:2242:0:0:0,-17.1587,-201.955 0/1:56:41,15:41:1592:15:586:-36.217,0,-126.664 0/1:74:60,13:60:2395:13:523:-25.2459,0,-193.546 dDocent_Contig_1473 12 . C G 48051.6 . AB=0.0874295;ABP=3672.56;AC=0;AF=0;AN=6;AO=217;CIGAR=1X1M1X6M1X;DP=2482;DPB=2482.1;DPRA=0;EPP=474.22;EPPR=70.3259;GTI=0;LEN=1;MEANALT=35.6667;MQM=51.0968;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0.333333;PQA=13;PQR=0;PRO=0;QA=7305;QR=1213;RO=31;RPL=0;RPP=474.22;RPPR=70.3259;RPR=217;RUN=1;SAF=217;SAP=474.22;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:912:18,65,225,345,41:18:707:65,225,345,41:2134,8662,12583,1591:-1662.78,-1498.91,-1537.5,-966.198,-855.065,-956.618,-643.854,-532.723,0,-598.151,-1537.49,-1426.36,-893.639,-571.295,-1583.3 0|0:678:10,78,199,242,14:10:388:78,199,242,14:2409,7595,8927,546:-1296.91,-1110.42,-1118.82,-692.497,-534.876,-664.471,-575.551,-417.932,0,-534.582,-1255.07,-1097.45,-679.531,-562.586,-1282.74 0|0:892:3,74,220,385,58:3:118:74,220,385,58:2762,8448,14347,2261:-1850.99,-1626.2,-1613.63,-1162.13,-946.137,-1105.61,-680.063,-464.072,0,-573.874,-1666.07,-1450.08,-986.008,-503.941,-1658.32 dDocent_Contig_1475 44 . C T 2123.11 . AB=0.453988;ABP=6.00773;AC=3;AF=0.5;AN=6;AO=74;CIGAR=1X;DP=163;DPB=163;DPRA=0;EPP=163.699;EPPR=194.1;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2954;QR=3366;RO=88;RPL=0;RPP=163.699;RPPR=194.1;RPR=74;RUN=1;SAF=74;SAP=163.699;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:13,37:13:507:37:1483:-118.667,0,-30.9208 0/1:64:42,22:42:1629:22:879:-60.1549,0,-127.593 0/1:49:33,15:33:1230:15:592:-39.0119,0,-96.3597 dDocent_Contig_1477 134 . G A 39.885 . AB=0.1875;ABP=16.582;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=2X;DP=32;DPB=32;DPRA=2;EPP=9.52472;EPPR=63.8115;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=1110;RO=28;RPL=0;RPP=9.52472;RPPR=63.8115;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:10:10,0:10:390:0:0:0,-3.0103,-35.4538 0|0:6:6,0:6:237:0:0:0,-1.80618,-21.7031 0|1:16:12,3:12:483:3:115:-5.81234,0,-38.9059 dDocent_Contig_1478 21 . C T 2488.64 . AB=0.110355;ABP=3492.34;AC=3;AF=0.5;AN=6;AO=292;CIGAR=1X;DP=2646;DPB=2646;DPRA=0;EPP=637.08;EPPR=4874.36;GTI=0;LEN=1;MEANALT=2.33333;MQM=58.4795;MQMR=59.8321;NS=3;NUMALT=1;ODDS=0;PAIRED=0.996575;PAIREDR=0.981296;PAO=0;PQA=0;PQR=0;PRO=0;QA=11637;QR=91587;RO=2299;RPL=0;RPP=637.08;RPPR=4995.23;RPR=292;RUN=1;SAF=292;SAP=637.08;SAR=0;SRF=2285;SRP=4874.36;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:930:775,126:775:30828:126:5016:-176.796,0,-2494.3 0/1:867:760,94:760:30262:94:3737:-69.9917,0,-2462.02 0/1:849:764,72:764:30497:72:2884:-7.59937,0,-2483.95 dDocent_Contig_1480 92 . C T 52.3906 . AB=0.166667;ABP=31.9633;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=84;DPB=84;DPRA=1.71053;EPP=20.3821;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=2625;RO=76;RPL=8;RPP=20.3821;RPPR=168.042;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:35:32,3:32:1103:3:103:0,-0.926028,-89.9685 0/1:30:25,5:25:860:5:175:-7.06279,0,-68.6845 0/0:19:19,0:19:662:0:0:0,-5.71957,-59.9056 dDocent_Contig_1481 14 . T C 25655.5 . AB=0.643229;ABP=71.4343;AC=6;AF=1;AN=6;AO=785;CIGAR=1X6M1X2M1X;DP=1124;DPB=1124;DPRA=0;EPP=1707.62;EPPR=79.0118;GTI=0;LEN=1;MEANALT=19.3333;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=2.22045e-16;PAIRED=0.997452;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=29556;QR=1356;RO=35;RPL=0;RPP=1707.62;RPPR=79.0118;RPR=785;RUN=1;SAF=785;SAP=1707.62;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:351:3,6,24,5,261:3:115:6,24,5,261:218,880,186,9756:-867.043,-850.15,-857.782,-796.023,-787.666,-798.237,-852.722,-844.364,-790.238,-860.656,-69.1299,-60.7729,-6.64773,-63.3445,0 1|1:389:20,16,20,1,277:20:765:16,20,1,277:635,732,35,10382:-864.873,-818.629,-876.587,-811.077,-821.587,-867.83,-868.046,-878.556,-871.003,-930.519,-20.6097,-31.1186,-23.5703,-80.5378,0 1|1:384:12,21,12,34,247:12:476:21,12,34,247:827,433,1286,9418:-835.155,-770.731,-803.594,-803.438,-774.586,-839.01,-733.361,-704.509,-737.217,-762.311,-66.2202,-37.3676,-70.0779,0,-31.0515 dDocent_Contig_1483 38 . A G 36.9154 . AB=0.125;ABP=71.4117;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X;DP=56;DPB=56;DPRA=0;EPP=18.2106;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=274;QR=1893;RO=49;RPL=0;RPP=18.2106;RPPR=109.412;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:8,2:8:304:2:81:-4.67543,0,-24.7043 0/1:16:14,2:14:547:2:76:-2.39706,0,-44.7509 0/1:30:27,3:27:1042:3:117:-1.87839,0,-85.0339 dDocent_Contig_1484 9 . G A 83.9568 . AB=0.150943;ABP=59.0998;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=122;DPB=122;DPRA=1.19444;EPP=22.5536;EPPR=248.387;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=324;QR=4099;RO=113;RPL=0;RPP=22.5536;RPPR=248.387;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=113;SRP=248.387;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:36:36,0:36:1316:0:0:0,-10.8371,-118.725 0/0:33:32,1:32:1186:1:37:0,-6.23616,-103.339 0/1:53:45,8:45:1597:8:287:-10.2196,0,-128.039 dDocent_Contig_1486 98 . N T 86.7838 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=93;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:93:-8.67784,-0.90309,0 dDocent_Contig_1487 126 . G T 54.7384 . AB=0.235294;ABP=13.3567;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=82;DPB=82;DPRA=0.523077;EPP=11.6962;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=131;QR=2491;RO=78;RPL=0;RPP=11.6962;RPPR=172.385;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=172.385;SRR=78;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:13,4:13:400:4:131:-6.99672,0,-31.1804 0/0:40:40,0:40:1309:0:0:0,-12.0412,-118.101 0/0:25:25,0:25:782:0:0:0,-7.52575,-70.6724 dDocent_Contig_1488 117 . T C 389.117 . AB=0.269231;ABP=39.0901;AC=2;AF=0.333333;AN=6;AO=22;CIGAR=1M1I1X;DP=117;DPB=128;DPRA=0;EPP=50.7827;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=760;QR=3218;RO=95;RPL=0;RPP=50.7827;RPPR=209.3;RPR=22;RUN=1;SAF=0;SAP=50.7827;SAR=22;SRF=0;SRP=209.3;SRR=95;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:39:38,1:38:1283:1:35:0,-8.24154,-112.271 0|1:37:30,7:30:1004:7:239:-10.706,0,-79.5269 0|1:41:27,14:27:931:14:486:-31.7285,0,-71.7612 dDocent_Contig_1489 126 . C T 221.757 . AB=0.25;ABP=31.2394;AC=1;AF=0.166667;AN=6;AO=17;CIGAR=1X;DP=121;DPB=121;DPRA=1.82692;EPP=39.9253;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=570;QR=3431;RO=104;RPL=0;RPP=39.9253;RPPR=228.843;RPR=17;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=228.843;SRR=104;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:831:0:0:0,-7.82678,-75.0839 0/0:43:39,4:39:1307:4:133:0,-0.645651,-105.626 0/1:52:39,13:39:1293:13:437:-23.9993,0,-101.009 dDocent_Contig_1491 107 . N G 62.6944 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=66;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:66:-6.26836,-0.60206,0 dDocent_Contig_1492 170 . G A 54.2646 . AB=0.214286;ABP=12.937;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=49;DPB=49;DPRA=0.8;EPP=9.52472;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=1798;RO=46;RPL=3;RPP=9.52472;RPPR=102.898;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=102.898;SRR=46;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:979:0:0:0,-7.52575,-88.4089 0/0:10:10,0:10:398:0:0:0,-3.0103,-36.1788 0/1:14:11,3:11:421:3:123:-7.25037,0,-34.0201 dDocent_Contig_1493 69 . G C 211.458 . AB=0.297297;ABP=16.2152;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=84;DPB=84;DPRA=0;EPP=31.2394;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=439;QR=2369;RO=71;RPL=13;RPP=31.2394;RPPR=157.185;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:26,11:26:866:11:372:-22.6687,0,-67.109 0/0:19:18,1:18:582:1:34:0,-2.32066,-49.2894 0/0:28:27,1:27:921:1:33:0,-5.1297,-79.903 dDocent_Contig_1494 8 . T A 49639.1 . AB=0.714734;ABP=1025.11;AC=3;AF=0.5;AN=6;AO=1824;CIGAR=1X;DP=2552;DPB=2552;DPRA=0;EPP=3963.78;EPPR=1575.16;GTI=0;LEN=1;MEANALT=1.33333;MQM=57.2094;MQMR=47.7141;NS=3;NUMALT=1;ODDS=0;PAIRED=0.985746;PAIREDR=0.477901;PAO=0;PQA=0;PQR=0;PRO=0;QA=64458;QR=24478;RO=724;RPL=0;RPP=3963.78;RPPR=1575.16;RPR=1824;RUN=1;SAF=1824;SAP=3963.78;SAR=0;SRF=724;SRP=1575.16;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:682:201,481:201:6977:481:17613:-1361.87,0,-366.372 0/1:720:167,549:167:5813:549:19950:-1557.46,0,-252.276 0/1:1150:356,794:356:11688:794:26895:-2050.11,0,-614.292 dDocent_Contig_1495 19 . C T 304.458 . AB=0.342105;ABP=11.239;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1X;DP=98;DPB=98;DPRA=0.984848;EPP=35.5824;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=563;QR=3311;RO=83;RPL=0;RPP=35.5824;RPPR=183.243;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1303:0:0:0,-9.93399,-117.543 0/1:38:25,13:25:1007:13:482:-32.2691,0,-79.4865 0/0:27:25,2:25:1001:2:81:0,-0.442076,-82.7029 dDocent_Contig_1496 115 . C G 104.949 . AB=0.26087;ABP=14.4341;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=98;DPB=98;DPRA=2.38235;EPP=20.3821;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=3005;RO=90;RPL=0;RPP=20.3821;RPPR=198.443;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=198.443;SRR=90;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:576:0:0:0,-5.11751,-52.1609 0/0:58:56,2:56:1865:2:68:0,-11.0018,-161.669 0/1:23:17,6:17:564:6:210:-12.3188,0,-44.1496 dDocent_Contig_1497 7 . G A 46074.5 . AB=0.121364;ABP=1244.53;AC=2;AF=0.333333;AN=6;AO=173;CIGAR=1X1M1X;DP=1651;DPB=1651;DPRA=0;EPP=378.675;EPPR=83.3548;GTI=0;LEN=1;MEANALT=5.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.99422;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6543;QR=1277;RO=37;RPL=0;RPP=378.675;RPPR=83.3548;RPR=173;RUN=1;SAF=173;SAP=378.675;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:556:15,82,451:15:527:82,451:3087,16866:-1586.59,-1338.16,-1356.36,-210.08,0,-117.201 0|0:654:11,52,557:11:384:52,557:1976,20699:-1826.96,-1668.22,-1683.79,-136.448,-5.60074,0 1|0:441:11,39,372:11:366:39,372:1480,13575:-1197.42,-1079.37,-1097.24,-91.7961,0,-9.42416 dDocent_Contig_1498 12 . C A 4259.38 . AB=0.0882353;ABP=403.583;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X5M1X3M1X;DP=272;DPB=272;DPRA=0;EPP=55.1256;EPPR=222.329;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=59.9901;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=928;QR=3928;RO=101;RPL=0;RPP=55.1256;RPPR=222.329;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:71:12,53,6:12:468:53,6:2057,228:-165.396,0,-22.5188,-150.314,-19.7813,-186.975 0|1:114:58,46,9:58:2268:46,9:1786,349:-129.288,0,-172.624,-118.074,-157.799,-301.834 0|1:87:31,46,9:31:1192:46,9:1779,351:-136.777,0,-83.9993,-117.257,-68.9939,-212.398 dDocent_Contig_1499 162 . A G 192.025 . AB=0.214286;ABP=42.7172;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=56;DPB=56;DPRA=0;EPP=29.068;EPPR=81.9729;GTI=0;LEN=1;MEANALT=1;MQM=58.6667;MQMR=59.3864;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.931818;PAO=0;PQA=0;PQR=0;PRO=0;QA=450;QR=1655;RO=44;RPL=12;RPP=29.068;RPPR=81.9729;RPR=0;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=98.5551;SRR=44;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:10,5:10:355:5:199:-13.772,0,-27.7618 0/1:22:18,4:18:684:4:130:-5.3927,0,-55.2513 0/1:19:16,3:16:616:3:121:-5.56063,0,-50.0546 dDocent_Contig_1500 7 . G T 112.418 . AB=0.0804598;ABP=136.019;AC=0;AF=0;AN=6;AO=7;CIGAR=1M1X3M1X1M3X;DP=122;DPB=122.5;DPRA=0;EPP=18.2106;EPPR=139.813;GTI=0;LEN=1;MEANALT=8;MQM=23;MQMR=60;NS=3;NUMALT=7;ODDS=2.77556e-17;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=254;QR=2359;RO=63;RPL=0;RPP=18.2106;RPPR=139.813;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:35:19,0,0,3,0,2,3,0:19:714:0,0,3,0,2,3,0:0,0,103,0,69,102,0:-2.63793,-8.3575,-66.8797,-8.3575,-66.8797,-66.8797,0,-58.5281,-58.5281,-57.625,-8.3575,-66.8797,-66.8797,-58.5281,-66.8797,-2.75047,-61.2765,-61.2765,-52.925,-61.2765,-60.6744,-0.0790552,-58.6067,-58.6067,-50.2553,-58.6067,-53.0036,-57.7036,-8.3575,-66.8797,-66.8797,-58.5281,-66.8797,-61.2765,-58.6067,-66.8797 0|0:32:17,0,5,3,0,0,0,3:17:643:0,5,3,0,0,0,3:0,192,99,0,0,0,120:-4.78817,-9.90568,-62.647,-1.1635,-53.8827,-52.3776,-1.93044,-54.6767,-45.9156,-53.7736,-9.90568,-62.647,-53.8827,-54.6767,-62.647,-9.90568,-62.647,-53.8827,-54.6767,-62.647,-62.647,-9.90568,-62.647,-53.8827,-54.6767,-62.647,-62.647,-62.647,0,-52.7566,-43.994,-44.7859,-52.7566,-52.7566,-52.7566,-51.8535 0|0:55:27,6,2,0,3,2,0,10:27:1002:6,2,0,3,2,0,10:120,62,0,105,67,0,239:-9.19793,-9.96711,-90.2028,-13.9265,-88.6121,-95.3719,-17.3257,-92.0089,-95.974,-99.372,-8.82423,-83.5179,-87.4822,-90.8802,-89.9771,-11.8949,-86.5843,-90.5488,-93.9468,-85.4548,-93.3447,-17.3257,-92.0089,-95.974,-99.372,-90.8802,-93.9468,-99.372,0,-74.6962,-78.6557,-82.0521,-73.5611,-76.6275,-82.0521,-79.0418 dDocent_Contig_1502 39 . T A 42448.4 . AB=0.404316;ABP=227.824;AC=3;AF=0.5;AN=6;AO=1143;CIGAR=1M1X1M2X2M1X4M;DP=2827;DPB=2896.58;DPRA=0;EPP=2467.66;EPPR=991.325;GTI=0;LEN=1;MEANALT=37;MQM=59.6605;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.00787402;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=44026;QR=18185;RO=471;RPL=0;RPP=2485;RPPR=991.325;RPR=1143;RUN=1;SAF=1141;SAP=2467.66;SAR=2;SRF=471;SRP=1025.77;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:942:136,373,65,258:136:5245:373,65,258:14370,2415,9299:-1466.61,-327.93,-646.349,-1309.93,-561.019,-1721.07,-748.911,0,-981.998,-1101.95 1|0:941:185,344,36,254:185:7148:344,36,254:13166,1344,9214:-1189.69,-165.113,-648.631,-1135.35,-642.155,-1711.58,-493.19,0,-970.228,-1003.8 1|0:944:150,426,31,257:150:5792:426,31,257:16490,1197,9330:-1594.07,-285.963,-633.378,-1540.92,-663.318,-2007.24,-877.6,0,-1254.95,-1275.88 dDocent_Contig_1503 132 . G A 210.817 . AB=0.208955;ABP=52.306;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1X;DP=151;DPB=151;DPRA=1.29762;EPP=35.5824;EPPR=298.331;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=509;QR=4567;RO=136;RPL=0;RPP=35.5824;RPPR=298.331;RPR=15;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=298.331;SRR=136;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:41,1:41:1406:1:34:0,-9.24435,-123.439 0/0:42:42,0:42:1359:0:0:0,-12.6433,-122.596 0/1:67:53,14:53:1802:14:475:-22.9056,0,-142.292 dDocent_Contig_1504 24 . T G 48.4217 . AB=0.272727;ABP=7.94546;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=64;DPB=64;DPRA=0.415094;EPP=9.52472;EPPR=110.694;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.901639;PAO=0;PQA=0;PQR=0;PRO=0;QA=107;QR=2248;RO=61;RPL=0;RPP=9.52472;RPPR=135.47;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=58;SRP=110.694;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:37,0:37:1347:0:0:0,-11.1381,-121.515 0/0:16:16,0:16:615:0:0:0,-4.81648,-55.6886 0/1:11:8,3:8:286:3:107:-6.66607,0,-22.7708 dDocent_Contig_1505 7 . A G 1768.63 . AB=0.59322;ABP=11.917;AC=3;AF=0.5;AN=6;AO=70;CIGAR=1X;DP=118;DPB=118;DPRA=0;EPP=155.013;EPPR=102.898;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.971429;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2407;QR=1749;RO=46;RPL=0;RPP=155.013;RPPR=102.898;RPR=70;RUN=1;SAF=70;SAP=155.013;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:16,18:16:603:18:666:-50.0351,0,-44.3701 0/1:47:20,26:20:763:26:946:-71.4821,0,-55.0288 0/1:37:10,26:10:383:26:795:-60.8682,0,-23.8532 dDocent_Contig_1507 20 . C G 133.808 . AB=0.24;ABP=17.6895;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=68;DPB=68;DPRA=1.16279;EPP=16.0391;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=2478;RO=62;RPL=0;RPP=16.0391;RPPR=137.642;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:19,6:19:744:6:245:-14.9037,0,-59.7576 0/0:31:31,0:31:1246:0:0:0,-9.33193,-112.412 0/0:12:12,0:12:488:0:0:0,-3.61236,-44.2715 dDocent_Contig_1509 42 . A G 190.587 . AB=0.166667;ABP=72.4974;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=222;DPB=222;DPRA=1.15672;EPP=33.4109;EPPR=454.677;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=550;QR=8103;RO=208;RPL=0;RPP=33.4109;RPPR=454.677;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=208;SRP=454.677;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:67:67,0:67:2597:0:0:0,-20.169,-233.885 0/0:83:81,2:81:3168:2:81:0,-17.2998,-277.535 0/1:72:60,12:60:2338:12:469:-20.8826,0,-188.909 dDocent_Contig_1510 35 . A G 73.9291 . AB=0.178571;ABP=28.1373;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=130;DPB=130;DPRA=0.54902;EPP=13.8677;EPPR=274.444;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=192;QR=4817;RO=125;RPL=0;RPP=13.8677;RPPR=274.444;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=125;SRP=274.444;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:48:48,0:48:1856:0:0:0,-14.4494,-167.264 0/0:54:54,0:54:2088:0:0:0,-16.2556,-188.126 0/1:28:23,5:23:873:5:192:-9.21681,0,-70.4404 dDocent_Contig_1511 174 . C T 1033.72 . AB=0.367925;ABP=19.071;AC=3;AF=0.5;AN=6;AO=39;CIGAR=1X;DP=106;DPB=106;DPRA=0;EPP=87.6977;EPPR=146.327;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1551;QR=2574;RO=66;RPL=39;RPP=87.6977;RPPR=146.327;RPR=0;RUN=1;SAF=0;SAP=87.6977;SAR=39;SRF=0;SRP=146.327;SRR=66;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:15,23:15:591:23:909:-70.6746,0,-42.0892 0/1:48:41,6:41:1581:6:240:-7.70159,0,-128.299 0/1:20:10,10:10:402:10:402:-30.5188,0,-30.5188 dDocent_Contig_1513 9 . T C 3439.77 . AB=0.785714;ABP=112.204;AC=3;AF=0.5;AN=6;AO=121;CIGAR=1X1M;DP=154;DPB=154;DPRA=0;EPP=265.758;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4374;QR=966;RO=26;RPL=0;RPP=265.758;RPPR=59.4686;RPR=121;RUN=1;SAF=121;SAP=265.758;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:43:8,1,34:8:302:1,34:37,1256:-100.315,-99.696,-124.147,0,-21.7309,-14.5221 0|1:59:6,6,47:6:235:6,47:215,1755:-141.899,-126.178,-143.698,0,-1.82837,-5.19252 0|1:52:12,0,40:12:429:0,40:0,1363:-107.284,-110.896,-145.871,0,-35.3283,-23.2871 dDocent_Contig_1514 79 . G T 246.489 . AB=0.4;ABP=5.61607;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=85;DPB=85;DPRA=1.09091;EPP=29.068;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=391;QR=2494;RO=73;RPL=12;RPP=29.068;RPPR=161.528;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1120:0:0:0,-9.93399,-101.106 0/0:22:22,0:22:753:0:0:0,-6.62266,-68.0885 0/1:30:18,12:18:621:12:391:-26.4728,0,-47.1835 dDocent_Contig_1516 84 . G A 65.0499 . AB=0.181818;ABP=32.0291;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=98;DPB=98;DPRA=1.01538;EPP=16.0391;EPPR=202.786;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=196;QR=3049;RO=92;RPL=6;RPP=16.0391;RPPR=202.786;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:27,6:27:922:6:196:-8.02787,0,-73.3569 0/0:45:45,0:45:1481:0:0:0,-13.5463,-133.577 0/0:20:20,0:20:646:0:0:0,-6.0206,-58.4437 dDocent_Contig_1517 22 . C T 2391.47 . AB=0.592593;ABP=13.0634;AC=3;AF=0.5;AN=6;AO=80;CIGAR=1X;DP=135;DPB=135;DPRA=0;EPP=176.728;EPPR=120.27;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3158;QR=2132;RO=54;RPL=0;RPP=176.728;RPPR=120.27;RPR=80;RUN=1;SAF=80;SAP=176.728;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:11,32:11:439:32:1259:-100.548,0,-26.8144 0/1:62:29,33:29:1131:33:1296:-98.2442,0,-83.3984 0/1:29:14,15:14:562:15:603:-45.8777,0,-42.1935 dDocent_Contig_1518 160 . C A 220.318 . AB=0.277778;ABP=18.4519;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=60;DPB=60;DPRA=0.75;EPP=24.725;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=396;QR=1972;RO=50;RPL=10;RPP=24.725;RPPR=111.584;RPR=0;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=111.584;SRR=50;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:12,5:12:469:5:193:-12.6212,0,-37.4371 0/0:24:24,0:24:945:0:0:0,-7.22472,-85.3503 0/1:19:14,5:14:558:5:203:-12.9335,0,-44.8414 dDocent_Contig_1519 13 . C A 1159.75 . AB=0.340909;ABP=32.0291;AC=3;AF=0.5;AN=6;AO=45;CIGAR=1X;DP=132;DPB=132;DPRA=0;EPP=100.727;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1779;QR=3449;RO=87;RPL=0;RPP=100.727;RPPR=191.928;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:33,14:33:1321:14:548:-35.5128,0,-105.009 0/1:55:27,28:27:1069:28:1112:-83.8112,0,-79.9469 0/1:30:27,3:27:1059:3:119:-2.06449,0,-86.5711 dDocent_Contig_1520 112 . C T 2675.74 . AB=0.811111;ABP=78.674;AC=4;AF=0.666667;AN=6;AO=98;CIGAR=1X;DP=117;DPB=117;DPRA=0;EPP=215.815;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3377;QR=613;RO=19;RPL=0;RPP=215.815;RPPR=44.2683;RPR=98;RUN=1;SAF=0;SAP=215.815;SAR=98;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:27:2,25:2:70:25:847:-69.8895,-1.48041,0 0/1:52:12,40:12:375:40:1397:-110.374,0,-18.3986 0/1:38:5,33:5:168:33:1133:-90.8312,0,-4.01188 dDocent_Contig_1521 23 . G A 484.156 . AB=0.307692;ABP=23.8898;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X;DP=65;DPB=65;DPRA=0;EPP=46.4397;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=804;QR=1774;RO=45;RPL=0;RPP=46.4397;RPPR=100.727;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:11,5:11:431:5:203:-13.8364,0,-34.3237 0/1:16:14,2:14:557:2:80:-2.77531,0,-45.653 0/1:33:20,13:20:786:13:521:-37.3031,0,-61.118 dDocent_Contig_1522 7 . G A 2132.01 . AB=0.0627133;ABP=3896.19;AC=0;AF=0;AN=6;AO=147;CIGAR=1X5M;DP=2344;DPB=2344;DPRA=0;EPP=322.217;EPPR=3703.2;GTI=0;LEN=1;MEANALT=17;MQM=59.6463;MQMR=59.5546;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.985915;PAO=0;PQA=0;PQR=0;PRO=0;QA=5556;QR=61667;RO=1704;RPL=0;RPP=322.217;RPPR=3703.2;RPR=147;RUN=1;SAF=147;SAP=322.217;SAR=0;SRF=1704;SRP=3703.2;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:752:511,45,105,41:511:18839:45,105,41:1725,4074,1539:-147.908,-161.565,-1688.28,0,-1400.09,-1508.64,-175.662,-1575.75,-1414.18,-1703.57 0|0:565:428,21,46,43:428:15614:21,46,43:797,1786,1613:-6.2686,-71.1144,-1339.19,0,-1210.41,-1260.55,-3.07431,-1213.49,-1142.37,-1264.53 0|0:1027:765,27,96,63:765:27214:27,96,63:1044,3727,2404:-64.5469,-214.638,-2423.51,0,-2136.81,-2188.11,-97.6076,-2234.41,-2019.79,-2295.65 dDocent_Contig_1524 51 . A G 3834.32 . AB=0.320717;ABP=143.161;AC=3;AF=0.5;AN=6;AO=161;CIGAR=1X;DP=502;DPB=502;DPRA=0;EPP=352.617;EPPR=743.482;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.795031;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5993;QR=12800;RO=341;RPL=161;RPP=352.617;RPPR=743.482;RPR=0;RUN=1;SAF=161;SAP=352.617;SAR=0;SRF=341;SRP=743.482;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:147:107,40:107:3985:40:1520:-92.8112,0,-314.491 0/1:208:159,49:159:6001:49:1836:-102.863,0,-477.365 0/1:147:75,72:75:2814:72:2637:-193.281,0,-209.195 dDocent_Contig_1525 31 . T G 45.6995 . AB=0.1875;ABP=16.582;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=43;DPB=43;DPRA=1.18519;EPP=9.52472;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=1560;RO=40;RPL=0;RPP=9.52472;RPPR=89.8692;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:13,3:13:518:3:117:-6.09281,0,-42.1488 0/0:8:8,0:8:307:0:0:0,-2.40824,-27.9831 0/0:19:19,0:19:735:0:0:0,-5.71957,-66.4679 dDocent_Contig_1526 136 . G A 92.1015 . AB=0.16;ABP=53.2147;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=174;DPB=174;DPRA=0.974576;EPP=26.8965;EPPR=356.96;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=392;QR=5479;RO=163;RPL=0;RPP=26.8965;RPPR=356.96;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=356.96;SRR=163;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:59:59,0:59:1959:0:0:0,-17.7608,-176.581 0/0:65:62,3:62:2076:3:106:0,-9.67778,-177.222 0/1:50:42,8:42:1444:8:286:-11.0341,0,-115.205 dDocent_Contig_1527 7 . G A 14631.4 . AB=0.440843;ABP=40.5201;AC=3;AF=0.5;AN=6;AO=544;CIGAR=1X;DP=1234;DPB=1234;DPRA=0;EPP=1184.29;EPPR=1473.1;GTI=0;LEN=1;MEANALT=2.33333;MQM=58.7059;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.777574;PAIREDR=0.822747;PAO=0;PQA=0;PQR=0;PRO=0;QA=20596;QR=24183;RO=677;RPL=0;RPP=1184.29;RPPR=1473.1;RPR=544;RUN=1;SAF=544;SAP=1184.29;SAR=0;SRF=677;SRP=1473.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:481:258,218:258:9358:218:8227:-591.942,0,-698.421 0/1:513:297,212:297:10902:212:7995:-557.663,0,-827.446 0/1:240:122,114:122:3923:114:4374:-319.055,0,-281.975 dDocent_Contig_1528 98 . N G 130.254 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=134;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:101:-9.42377,-0.90309,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:33:-3.29913,-0.30103,0 dDocent_Contig_1529 8 . A G 1825.17 . AB=0.62963;ABP=18.7736;AC=3;AF=0.5;AN=6;AO=68;CIGAR=1X;DP=108;DPB=108;DPRA=0;EPP=150.67;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2441;QR=1318;RO=39;RPL=0;RPP=150.67;RPPR=87.6977;RPR=68;RUN=1;SAF=68;SAP=150.67;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:21,10:21:730:10:361:-23.4997,0,-56.6746 0/1:52:10,41:10:360:41:1488:-118.468,0,-17.0123 0/1:25:8,17:8:228:17:592:-46.0728,0,-13.2688 dDocent_Contig_1531 8 . A T 75.6684 . AB=0.148148;ABP=90.1105;AC=1;AF=0.166667;AN=6;AO=19;CIGAR=1X;DP=215;DPB=215;DPRA=0;EPP=44.2683;EPPR=426.447;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=59.9538;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=604;QR=6816;RO=195;RPL=0;RPP=44.2683;RPPR=426.447;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=195;SRP=426.447;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:70:66,4:66:2386:4:126:0,-9.4231,-203.314 0/0:64:60,3:60:2186:3:106:0,-9.36666,-187.117 0/1:81:69,12:69:2244:12:372:-9.39075,0,-177.774 dDocent_Contig_1533 11 . C A 1215.52 . AB=0.438095;ABP=6.50534;AC=3;AF=0.5;AN=6;AO=46;CIGAR=1X;DP=105;DPB=105;DPRA=0;EPP=102.898;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1752;QR=2312;RO=59;RPL=0;RPP=102.898;RPPR=131.127;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:22,14:22:882:14:542:-38.284,0,-68.8527 0/1:31:15,16:15:566:16:627:-47.4336,0,-41.9301 0/1:38:22,16:22:864:16:583:-41.3575,0,-66.6286 dDocent_Contig_1535 107 . N T 104.487 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_1536 106 . N A 188.295 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=6;CIGAR=1X15I1X;DP=38;DPB=245;DPRA=2.21429;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=3;MQM=45;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=0;PAO=9;PQA=355;PQR=0;PRO=0;QA=229;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:14:0,3:0:0:3:116:-7.95472,-0.90309,0 1|1:17:0,3:0:0:3:113:-10.1747,-0.90309,0 1|1:7:0,0:0:0:0:0:0,0,0 dDocent_Contig_1539 46 . A T 73.6255 . AB=0.171429;ABP=35.8306;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=96;DPB=96;DPRA=1.21429;EPP=20.3821;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=293;QR=3419;RO=88;RPL=0;RPP=20.3821;RPPR=194.1;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:29,6:29:1130:6:212:-8.88542,0,-91.454 0/0:33:31,2:31:1222:2:81:0,-2.24826,-102.57 0/0:28:28,0:28:1067:0:0:0,-8.42884,-96.3193 dDocent_Contig_1540 94 . G A 3536 . AB=0.641667;ABP=23.9288;AC=4;AF=0.666667;AN=6;AO=134;CIGAR=1X;DP=181;DPB=181;DPRA=0;EPP=293.988;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4482;QR=1553;RO=47;RPL=134;RPP=293.988;RPPR=105.07;RPR=0;RUN=1;SAF=134;SAP=293.988;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:66:30,36:30:1003:36:1237:-91.7662,0,-70.7079 0/1:54:13,41:13:431:41:1381:-108.33,0,-22.8545 1/1:61:4,57:4:119:57:1864:-157.027,-7.35813,0 dDocent_Contig_1542 141 . G T 180.249 . AB=0.4375;ABP=3.55317;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=46;DPB=46;DPRA=1.06667;EPP=18.2106;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=270;QR=1461;RO=39;RPL=0;RPP=18.2106;RPPR=87.6977;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=87.6977;SRR=39;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:520:0:0:0,-4.21442,-47.1372 0/1:16:9,7:9:350:7:270:-19.8488,0,-27.0449 0/0:16:16,0:16:591:0:0:0,-4.81648,-53.5195 dDocent_Contig_1544 38 . T C 1040.44 . AB=0.425287;ABP=7.22845;AC=2;AF=0.333333;AN=6;AO=40;CIGAR=1X;DP=154;DPB=154;DPRA=0;EPP=89.8692;EPPR=250.558;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1596;QR=4543;RO=114;RPL=0;RPP=89.8692;RPPR=250.558;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:28,17:28:1122:17:678:-47.8033,0,-87.7181 0/0:67:64,3:64:2546:3:117:0,-9.25972,-218.366 0/1:42:22,20:22:875:20:801:-59.7633,0,-66.4124 dDocent_Contig_1545 98 . N C 205.349 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=211;QR=0;RO=0;RPL=7;RPP=18.2106;RPPR=0;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:33:-3.29913,-0.30103,0 1/1:4:0,4:0:0:4:109:-10.0801,-1.20412,0 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 dDocent_Contig_1546 59 . T C 1590.86 . AB=0.373494;ABP=26.0855;AC=3;AF=0.5;AN=6;AO=62;CIGAR=1X;DP=166;DPB=166;DPRA=0;EPP=137.642;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2374;QR=4082;RO=104;RPL=62;RPP=137.642;RPPR=228.843;RPR=0;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:25,33:25:968:33:1279:-97.9198,0,-69.9614 0/1:40:31,9:31:1198:9:339:-18.8156,0,-96.0573 0/1:68:48,20:48:1916:20:756:-47.8732,0,-152.175 dDocent_Contig_1547 22 . A G 1971.15 . AB=0.641026;ABP=16.4846;AC=4;AF=0.666667;AN=6;AO=63;CIGAR=1X;DP=92;DPB=92;DPRA=0;EPP=139.813;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2523;QR=1164;RO=29;RPL=0;RPP=139.813;RPPR=65.983;RPR=63;RUN=1;SAF=63;SAP=139.813;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:15,17:15:604:17:687:-52.5268,0,-45.0652 1/1:14:1,13:1:39:13:521:-43.3405,-0.317856,0 0/1:46:13,33:13:521:33:1315:-104.77,0,-33.3897 dDocent_Contig_1549 55 . A C 1294.43 . AB=0.673077;ABP=16.5402;AC=4;AF=0.666667;AN=6;AO=42;CIGAR=1X;DP=59;DPB=59;DPRA=0;EPP=94.2121;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1640;QR=657;RO=17;RPL=42;RPP=94.2121;RPPR=39.9253;RPR=0;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:6,9:6:239:9:353:-27.6144,0,-17.369 1/1:7:0,7:0:0:7:285:-26.0244,-2.10721,0 0/1:37:11,26:11:418:26:1002:-79.3273,0,-26.83 dDocent_Contig_1552 7 . G A 1985.53 . AB=0.170663;ABP=670.957;AC=3;AF=0.5;AN=6;AO=121;CIGAR=1X;DP=709;DPB=709;DPRA=0;EPP=265.758;EPPR=1251.61;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4593;QR=19677;RO=575;RPL=0;RPP=265.758;RPPR=1251.61;RPR=121;RUN=1;SAF=121;SAP=265.758;SAR=0;SRF=575;SRP=1251.61;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:206:173,30:173:6054:30:1109:-38.7546,0,-483.523 0/1:258:199,55:199:6889:55:2111:-113.614,0,-543.394 0/1:245:203,36:203:6734:36:1373:-51.7081,0,-533.939 dDocent_Contig_1553 71 . C A 3743.59 . AB=0.793103;ABP=89.5697;AC=4;AF=0.666667;AN=6;AO=134;CIGAR=1X;DP=158;DPB=158;DPRA=0;EPP=293.988;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4577;QR=834;RO=24;RPL=134;RPP=293.988;RPPR=55.1256;RPR=0;RUN=1;SAF=134;SAP=293.988;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:13,29:13:450:29:1010:-78.5684,0,-28.1861 0/1:74:11,63:11:384:63:2136:-170.231,0,-12.6182 1/1:42:0,42:0:0:42:1431:-129.083,-12.6433,0 dDocent_Contig_1554 7 . G T 1005.63 . AB=0.410526;ABP=9.61615;AC=3;AF=0.5;AN=6;AO=39;CIGAR=1X;DP=95;DPB=95;DPRA=0;EPP=87.6977;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1485;QR=1989;RO=56;RPL=0;RPP=87.6977;RPPR=124.613;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:16,19:16:555:19:727:-55.2247,0,-39.7315 0/1:39:31,8:31:1138:8:312:-16.7048,0,-90.9752 0/1:21:9,12:9:296:12:446:-34.157,0,-20.6317 dDocent_Contig_1556 16 . T A 810.56 . AB=0.213904;ABP=135.958;AC=3;AF=0.5;AN=6;AO=40;CIGAR=1X;DP=187;DPB=187;DPRA=0;EPP=89.8692;EPPR=322.217;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1576;QR=5756;RO=147;RPL=0;RPP=89.8692;RPPR=322.217;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=147;SRP=322.217;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:33,13:33:1291:13:514:-32.7604,0,-102.621 0/1:83:67,16:67:2618:16:635:-32.4971,0,-210.793 0/1:58:47,11:47:1847:11:427:-21.3213,0,-148.989 dDocent_Contig_1557 24 . T C 730.901 . AB=0.368421;ABP=14.4391;AC=2;AF=0.333333;AN=6;AO=29;CIGAR=1X;DP=96;DPB=96;DPRA=0;EPP=65.983;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1138;QR=2487;RO=67;RPL=0;RPP=65.983;RPPR=148.499;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:19,1:19:707:1:40:0,-2.02492,-59.9591 0/1:33:23,10:23:842:10:403:-26.6964,0,-66.1507 0/1:43:25,18:25:938:18:695:-49.9165,0,-71.7837 dDocent_Contig_1558 8 . A G 277.049 . AB=0.241379;ABP=36.7056;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=136;DPB=136;DPRA=1.48718;EPP=33.4109;EPPR=267.93;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=515;QR=4382;RO=122;RPL=0;RPP=33.4109;RPPR=267.93;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=122;SRP=267.93;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:44,14:44:1631:14:515:-29.2278,0,-129.593 0/0:47:47,0:47:1707:0:0:0,-14.1484,-153.896 0/0:31:31,0:31:1044:0:0:0,-9.33193,-94.2411 dDocent_Contig_1559 18 . G A 104.563 . AB=0.140351;ABP=67.0497;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=143;DPB=143;DPRA=1.32558;EPP=20.3821;EPPR=296.159;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=323;QR=5339;RO=135;RPL=0;RPP=20.3821;RPPR=296.159;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=135;SRP=296.159;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:42,0:42:1630:0:0:0,-12.6433,-146.934 0/0:44:44,0:44:1742:0:0:0,-13.2453,-157.006 0/1:57:49,8:49:1967:8:323:-12.2802,0,-160.067 dDocent_Contig_1560 18 . C G 3625.18 . AB=0.809859;ABP=121.432;AC=3;AF=0.5;AN=6;AO=115;CIGAR=1X;DP=142;DPB=142;DPRA=0;EPP=252.73;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4555;QR=1091;RO=27;RPL=0;RPP=252.73;RPPR=61.6401;RPR=115;RUN=1;SAF=115;SAP=252.73;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:14,25:14:566:25:986:-77.2974,0,-39.5428 0/1:66:6,60:6:240:60:2373:-193.864,0,-2.10656 0/1:37:7,30:7:285:30:1196:-96.7792,0,-14.8863 dDocent_Contig_1561 27 . G A 34.5375 . AB=0.222222;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=24;DPB=24;DPRA=1.2;EPP=7.35324;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=896;RO=22;RPL=0;RPP=7.35324;RPPR=50.7827;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:286:2:81:-4.97646,0,-23.4055 0/0:7:7,0:7:283:0:0:0,-2.10721,-25.8436 0/0:8:8,0:8:327:0:0:0,-2.40824,-29.8001 dDocent_Contig_1562 49 . G T 209.913 . AB=0.0961538;ABP=76.6733;AC=0;AF=0;AN=6;AO=9;CIGAR=1X2M1X;DP=108;DPB=108;DPRA=0;EPP=22.5536;EPPR=187.585;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=358;QR=3312;RO=85;RPL=9;RPP=22.5536;RPPR=187.585;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:24:19,2,3:19:737:2,3:79,122:-4.3506,-3.57383,-63.4989,0,-54.0352,-59.6337 0|0:28:17,3,8:17:643:3,8:118,308:-20.1628,-15.5714,-67.3665,0,-42.9811,-50.2817 0|0:56:49,4,3:49:1932:4,3:161,123:0,-1.48538,-159.216,-4.59505,-150.267,-162.634 dDocent_Contig_1563 43 . G A 1397.31 . AB=0.381295;ABP=20.0228;AC=3;AF=0.5;AN=6;AO=53;CIGAR=1X;DP=139;DPB=139;DPRA=0;EPP=118.098;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2068;QR=3399;RO=86;RPL=0;RPP=118.098;RPPR=189.757;RPR=53;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:28,14:28:1099:14:542:-36.4761,0,-86.5564 0/1:54:26,28:26:1033:28:1083:-81.4957,0,-77.0109 0/1:43:32,11:32:1267:11:443:-27.2818,0,-101.36 dDocent_Contig_1564 88 . C A 1367.65 . AB=0.0645161;ABP=105.14;AC=0;AF=0;AN=6;AO=4;CIGAR=11M1X1M1X5M;DP=94;DPB=94.7368;DPRA=0;EPP=11.6962;EPPR=48.6112;GTI=0;LEN=1;MEANALT=6.5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=55;QR=713;RO=21;RPL=4;RPP=11.6962;RPPR=48.6112;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:20:8,2,1,9:8:279:2,1,9:27,37,288:-20.8756,-21.4875,-43.5881,-20.2498,-41.1611,-42.6671,0,-21.0019,-19.7577,-20.0812 0|0:32:1,0,7,23:1:35:0,7,23:0,246,727:-75.3271,-75.6281,-78.4766,-55.5993,-58.4483,-56.3411,-17.1674,-20.0148,0,-13.0911 0|0:42:12,2,2,19:12:399:2,2,19:28,75,615:-46.085,-47.7892,-79.4876,-43.5471,-73.9425,-75.2505,0,-30.453,-26.2053,-26.6394 dDocent_Contig_1565 82 . G A 1177.87 . AB=0.538462;ABP=4.17955;AC=3;AF=0.5;AN=6;AO=49;CIGAR=1X;DP=91;DPB=91;DPRA=0;EPP=109.412;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1664;QR=1481;RO=42;RPL=49;RPP=109.412;RPPR=94.2121;RPR=0;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:24,28:24:840:28:970:-71.9521,0,-60.2631 0/1:22:11,11:11:393:11:350:-25.1838,0,-29.0868 0/1:17:7,10:7:248:10:344:-26.174,0,-17.5469 dDocent_Contig_1566 98 . N T 70.2696 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=74;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:74:-7.02588,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_1567 180 . C T 1424 . AB=0.583333;ABP=8.07707;AC=3;AF=0.5;AN=6;AO=49;CIGAR=1X;DP=84;DPB=84;DPRA=0;EPP=109.412;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1910;QR=1353;RO=35;RPL=49;RPP=109.412;RPPR=79.0118;RPR=0;RUN=1;SAF=0;SAP=109.412;SAR=49;SRF=0;SRP=79.0118;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:20,16:20:750:16:601:-43.588,0,-56.9753 0/1:20:2,18:2:82:18:724:-59.4653,0,-1.75908 0/1:28:13,15:13:521:15:585:-44.5527,0,-38.807 dDocent_Contig_1568 38 . C T 141.815 . AB=0.216216;ABP=28.8919;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=72;DPB=72;DPRA=0.528571;EPP=20.3821;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=312;QR=2514;RO=64;RPL=0;RPP=20.3821;RPPR=141.985;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:17,6:17:653:6:234:-14.5068,0,-52.1694 0/1:14:12,2:12:477:2:78:-3.18836,0,-39.0673 0/0:35:35,0:35:1384:0:0:0,-10.536,-124.823 dDocent_Contig_1570 48 . T G 77.7103 . AB=0.111111;ABP=144.88;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=108;DPB=108;DPRA=0;EPP=29.068;EPPR=113.846;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=477;QR=3764;RO=96;RPL=0;RPP=29.068;RPPR=113.846;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:31,5:31:1205:5:201:-7.63344,0,-97.8917 0/1:24:22,2:22:867:2:79:-0.272912,0,-71.1076 0/1:48:43,5:43:1692:5:197:-3.65459,0,-138.049 dDocent_Contig_1571 10 . T C 3640.22 . AB=0.5125;ABP=3.33602;AC=3;AF=0.5;AN=6;AO=123;CIGAR=1X;DP=240;DPB=240;DPRA=0;EPP=270.101;EPPR=257.073;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4901;QR=4645;RO=117;RPL=0;RPP=270.101;RPPR=257.073;RPR=123;RUN=1;SAF=123;SAP=270.101;SAR=0;SRF=117;SRP=257.073;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:76:31,45:31:1225:45:1784:-137.905,0,-87.6512 0/1:75:44,31:44:1732:31:1239:-89.2082,0,-133.529 0/1:89:42,47:42:1688:47:1878:-142.432,0,-125.351 dDocent_Contig_1572 25 . G A 140.082 . AB=0.0877193;ABP=87.1644;AC=0;AF=0;AN=6;AO=5;CIGAR=5M1I7M1X;DP=149;DPB=148.538;DPRA=1.23913;EPP=13.8677;EPPR=287.473;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=5116;RO=131;RPL=0;RPP=13.8677;RPPR=287.473;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=131;SRP=287.473;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:44:43,0,0:43:1669:0,0:0,0:0,-12.9443,-150.09,-12.9443,-150.09,-150.09 0|0:57:40,5,9:40:1568:5,9:197,340:-15.8321,-11.6581,-139.115,0,-112.755,-126.253 0|0:48:48,0,0:48:1879:0,0:0,0:0,-14.4494,-169.336,-14.4494,-169.336,-169.336 dDocent_Contig_1574 9 . C T 11169 . AB=0.268996;ABP=838.707;AC=3;AF=0.5;AN=6;AO=485;CIGAR=1X;DP=1803;DPB=1803;DPRA=0;EPP=1056.17;EPPR=2858.5;GTI=0;LEN=1;MEANALT=1.66667;MQM=59.7918;MQMR=59.5719;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.98251;PAO=0;PQA=0;PQR=0;PRO=0;QA=18506;QR=50119;RO=1315;RPL=0;RPP=1056.17;RPPR=2858.5;RPR=485;RUN=1;SAF=485;SAP=1056.17;SAR=0;SRF=1315;SRP=2858.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:598:435,162:435:16516:162:6161:-374.092,0,-1304.61 0/1:448:336,110:336:12726:110:4184:-241.98,0,-997.119 0/1:757:544,213:544:20877:213:8161:-506.354,0,-1648.9 dDocent_Contig_1576 11 . C T 83.2657 . AB=0.25;ABP=11.6962;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=43;DPB=43;DPRA=1.18519;EPP=11.6962;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=1574;RO=39;RPL=0;RPP=11.6962;RPPR=87.6977;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:608:0:0:0,-4.51545,-55.0572 0/0:12:12,0:12:474:0:0:0,-3.61236,-43.0112 0/1:16:12,4:12:492:4:162:-10.1505,0,-39.8143 dDocent_Contig_1577 24 . T C 1090.06 . AB=0.464286;ABP=3.94093;AC=3;AF=0.5;AN=6;AO=39;CIGAR=1X;DP=84;DPB=84;DPRA=0;EPP=87.6977;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1542;QR=1832;RO=45;RPL=0;RPP=87.6977;RPPR=100.727;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:21,10:21:850:10:385:-25.6711,0,-67.4801 0/1:19:6,13:6:246:13:522:-41.6088,0,-16.8005 0/1:34:18,16:18:736:16:635:-47.2492,0,-56.3273 dDocent_Contig_1578 19 . G C 580.991 . AB=0.262626;ABP=51.4626;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X;DP=99;DPB=99;DPRA=0;EPP=59.4686;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1026;QR=2776;RO=73;RPL=0;RPP=59.4686;RPPR=161.528;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:14,6:14:532:6:231:-15.135,0,-42.2009 0/1:33:21,12:21:772:12:478:-33.438,0,-59.8602 0/1:46:38,8:38:1472:8:317:-15.0491,0,-118.903 dDocent_Contig_1579 47 . G A 741.304 . AB=0.322222;ABP=27.7168;AC=3;AF=0.5;AN=6;AO=29;CIGAR=1X;DP=90;DPB=90;DPRA=0;EPP=65.983;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1174;QR=2394;RO=61;RPL=0;RPP=65.983;RPPR=135.47;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:21,14:21:838:14:565:-40.6568,0,-65.1985 0/1:31:27,4:27:1074:4:162:-5.63503,0,-87.6162 0/1:24:13,11:13:482:11:447:-33.3614,0,-36.4801 dDocent_Contig_1580 93 . G A 255.253 . AB=0.413793;ABP=4.88226;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=73;DPB=73;DPRA=1.31818;EPP=29.068;EPPR=126.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.983607;PAO=0;PQA=0;PQR=0;PRO=0;QA=394;QR=2030;RO=61;RPL=12;RPP=29.068;RPPR=135.47;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=60;SRP=126.927;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:17,12:17:554:12:394:-27.0482,0,-41.4415 0/0:27:27,0:27:891:0:0:0,-8.12781,-80.4924 0/0:17:17,0:17:585:0:0:0,-5.11751,-52.975 dDocent_Contig_1581 9 . T C 758.647 . AB=0.408451;ABP=8.17902;AC=2;AF=0.333333;AN=6;AO=29;CIGAR=1X1M1X1M1X;DP=121;DPB=121;DPRA=0.71;EPP=65.983;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1112;QR=3549;RO=91;RPL=0;RPP=65.983;RPPR=200.614;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:28:12,16:12:470:16:605:-46.3562,0,-34.2231 0|0:50:49,0:49:1910:0:0:0,-14.7505,-171.751 0|1:43:30,13:30:1169:13:507:-33.0314,0,-92.556 dDocent_Contig_1582 63 . C T 37.8283 . AB=0.153846;ABP=30.0702;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=57;DPB=57;DPRA=0.419355;EPP=11.6962;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=2083;RO=53;RPL=4;RPP=11.6962;RPPR=118.098;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:14,2:14:560:2:77:-2.49172,0,-45.9271 0/1:10:8,2:8:306:2:82:-4.76938,0,-24.8885 0/0:31:31,0:31:1217:0:0:0,-9.33193,-109.806 dDocent_Contig_1584 61 . T C 78.7145 . AB=0.142857;ABP=49.5419;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=130;DPB=130;DPRA=0.954545;EPP=16.0391;EPPR=272.273;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=4863;RO=124;RPL=6;RPP=16.0391;RPPR=272.273;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=124;SRP=272.273;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1294:0:0:0,-9.93399,-116.73 0/1:42:36,6:36:1420:6:244:-9.69536,0,-115.42 0/0:55:55,0:55:2149:0:0:0,-16.5566,-193.606 dDocent_Contig_1585 44 . G A 38542.5 . AB=0.26386;ABP=693.202;AC=3;AF=0.5;AN=6;AO=376;CIGAR=2X;DP=1425;DPB=1425;DPRA=0;EPP=819.484;EPPR=202.786;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.952128;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=14784;QR=3517;RO=92;RPL=0;RPP=819.484;RPPR=202.786;RPR=376;RUN=1;SAF=376;SAP=819.484;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:466:18,136,307:18:674:136,307:5325,12037:-1367,-934.591,-948.843,-382.657,0,-345.433 1|0:394:27,97,249:27:1025:97,249:3804,9827:-1029.17,-724.486,-779.325,-228.784,0,-237.866 1|0:565:47,143,353:47:1818:143,353:5655,14105:-1463.6,-1012.4,-1118.68,-316.036,0,-359.094 dDocent_Contig_1586 208 . A G 61081.9 . AB=0.0391843;ABP=4616;AC=0;AF=0;AN=6;AO=98;CIGAR=1X2M1X;DP=2501;DPB=2501;DPRA=0;EPP=130.994;EPPR=603.737;GTI=0;LEN=1;MEANALT=13.3333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.816327;PAIREDR=0.858553;PAO=0;PQA=0;PQR=0;PRO=0;QA=3567;QR=11191;RO=304;RPL=98;RPP=215.815;RPPR=663.138;RPR=0;RUN=1;SAF=11;SAP=130.994;SAR=87;SRF=7;SRP=603.737;SRR=297;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:981:120,25,788:120:4417:25,788:893,29544:-2383.66,-2347,-2700.63,0,-288.391,-123.963 0|0:754:102,40,589:102:3754:40,589:1420,22037:-1773.86,-1688.89,-1983.78,0,-191.269,-129.638 0|0:766:82,33,631:82:3020:33,631:1254,24140:-1956.19,-1878.05,-2115.05,0,-144.101,-56.985 dDocent_Contig_1590 13 . T C 12997.3 . AB=0.836653;ABP=497.189;AC=3;AF=0.5;AN=6;AO=420;CIGAR=1X;DP=502;DPB=502;DPRA=0;EPP=915.029;EPPR=176.728;GTI=0;LEN=1;MEANALT=1.33333;MQM=55.431;MQMR=58.8875;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.975;PAO=0;PQA=0;PQR=0;PRO=0;QA=16747;QR=3167;RO=80;RPL=0;RPP=915.029;RPPR=176.728;RPR=420;RUN=1;SAF=420;SAP=915.029;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:155:29,124:29:1162:124:4886:-382.54,0,-58.4467 0/1:163:29,134:29:1143:134:5335:-403.313,0,-54.0836 0/1:184:22,162:22:862:162:6526:-519.397,0,-19.9677 dDocent_Contig_1591 12 . T C 32.0726 . AB=0.142857;ABP=34.0313;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=55;DPB=55;DPRA=0;EPP=13.8677;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=1995;RO=50;RPL=0;RPP=13.8677;RPPR=111.584;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:15,2:15:606:2:78:-2.28579,0,-49.7605 0/1:11:9,2:9:359:2:81:-4.3744,0,-29.3592 0/0:27:26,1:26:1030:1:41:0,-4.03324,-88.8959 dDocent_Contig_1593 7 . C A 5330.22 . AB=0.0392157;ABP=285.174;AC=0;AF=0;AN=6;AO=41;CIGAR=1X2M1X;DP=520;DPB=520;DPRA=0;EPP=92.0407;EPPR=128.956;GTI=0;LEN=1;MEANALT=5;MQM=21;MQMR=46.6379;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.62069;PAO=0;PQA=0;PQR=0;PRO=0;QA=1571;QR=2215;RO=58;RPL=0;RPP=92.0407;RPPR=128.956;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:153:28,6,9,110:28:1064:6,9,110:231,358,4333:-131.991,-130.927,-206.824,-122.612,-190.825,-197.608,0,-68.2649,-59.953,-44.6283 0|0:141:14,11,6,104:14:533:11,6,104:412,243,4108:-143.046,-129.903,-156.992,-141.335,-154.378,-169.928,-0.879567,-13.9537,-25.3927,0 0|0:226:16,24,2,181:16:618:24,2,181:928,76,7266:-259.507,-226.346,-263.085,-260.945,-266.931,-304.306,-10.4885,-16.564,-51.1096,0 dDocent_Contig_1594 16 . T C 3307.89 . AB=0.348066;ABP=184.466;AC=3;AF=0.5;AN=6;AO=315;CIGAR=1X3M;DP=905;DPB=900.25;DPRA=0;EPP=687.024;EPPR=965.442;GTI=0;LEN=1;MEANALT=9;MQM=25.0952;MQMR=16.4406;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.0561555;PAO=0;PQA=0;PQR=0;PRO=0;QA=7079;QR=18195;RO=463;RPL=0;RPP=687.024;RPPR=1008.4;RPR=315;RUN=1;SAF=315;SAP=687.024;SAR=0;SRF=458;SRP=965.442;SRR=5;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:312:171,1,109:171:6684:1,109:40,2466:-115.036,-164.233,-341.426,0,-175.211,-144.679 0|1:235:137,0,63:137:5398:0,63:0,1476:-60.2648,-101.506,-257.971,0,-156.515,-137.551 0|1:358:155,18,143:155:6113:18,143:721,3137:-161.011,-185.593,-308.712,0,-106.445,-85.4797 dDocent_Contig_1595 7 . C T 3402.47 . AB=0.226361;ABP=229.994;AC=3;AF=0.5;AN=6;AO=79;CIGAR=1X1M1X;DP=349;DPB=349;DPRA=0;EPP=174.557;EPPR=124.613;GTI=0;LEN=1;MEANALT=2;MQM=52.443;MQMR=47.1786;NS=3;NUMALT=2;ODDS=0;PAIRED=0.936709;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2985;QR=2105;RO=56;RPL=0;RPP=174.557;RPPR=124.613;RPR=79;RUN=1;SAF=79;SAP=174.557;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:142:32,40,70:32:1194:40,70:1500,2643:-105.692,0,-78.7548,-41.3495,-16.8274,-111.009 1|0:98:10,16,72:10:378:16,72:607,2785:-119.832,-73.1176,-75.7198,-42.5238,0,-28.1723 1|0:109:14,23,72:14:533:23,72:878,2769:-120.245,-54.8477,-86.5391,-31.0068,0,-47.9102 dDocent_Contig_1596 45 . T C 489.507 . AB=0.147847;ABP=3179.54;AC=3;AF=0.5;AN=6;AO=436;CIGAR=1X;DP=2949;DPB=2949;DPRA=0;EPP=941.106;EPPR=4910.15;GTI=0;LEN=1;MEANALT=2;MQM=23.6468;MQMR=40.949;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=17373;QR=95464;RO=2390;RPL=1;RPP=941.106;RPPR=4910.15;RPR=435;RUN=1;SAF=436;SAP=949.772;SAR=0;SRF=2390;SRP=5192.83;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:1124:900,170:900:35777:170:6683:-1.82188,0,-2381.93 0/1:876:716,121:716:28653:121:4839:-11.7531,0,-1835.46 0/1:949:774,145:774:31034:145:5851:-40.6336,0,-1994.52 dDocent_Contig_1597 69 . C A 10300.4 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=666;CIGAR=1X;DP=710;DPB=710;DPRA=0;EPP=1449.21;EPPR=76.8404;GTI=0;LEN=1;MEANALT=2;MQM=19.6502;MQMR=54.5588;NS=3;NUMALT=1;ODDS=2.77556e-17;PAIRED=0.0165165;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=25472;QR=1213;RO=34;RPL=666;RPP=1449.21;RPPR=76.8404;RPR=0;RUN=1;SAF=666;SAP=1449.21;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:238:1,237:1:7:237:9100:-435.091,-70.9588,0 1/1:221:11,205:11:414:205:7809:-304.419,-27.5942,0 1/1:251:22,224:22:792:224:8563:-290.052,-4.62298,0 dDocent_Contig_1598 16 . T C 12991.7 . AB=0.774325;ABP=802.426;AC=4;AF=0.666667;AN=6;AO=1418;CIGAR=1X2M;DP=1821;DPB=1821;DPRA=0;EPP=3082.16;EPPR=561.079;GTI=0;LEN=1;MEANALT=6;MQM=16.8731;MQMR=26.4319;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.140078;PAO=0;PQA=0;PQR=0;PRO=0;QA=23946;QR=10164;RO=257;RPL=0;RPP=3082.16;RPPR=561.079;RPR=1418;RUN=1;SAF=1418;SAP=3082.16;SAR=0;SRF=257;SRP=561.079;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:598:72,42,471:72:2834:42,471:1659,8127:-482.111,-450.611,-544.637,-35.107,-88.6195,0 0|1:535:79,40,411:79:3139:40,411:1593,7224:-384.199,-370.4,-509.133,0,-113.277,-27.1012 0|1:688:106,36,536:106:4191:36,536:1442,8595:-436.383,-433.573,-615.506,0,-158.116,-31.4614 dDocent_Contig_1599 36 . T A 151.287 . AB=0.317365;ABP=99.7774;AC=1;AF=0.166667;AN=6;AO=231;CIGAR=1X;DP=883;DPB=883;DPRA=0;EPP=504.62;EPPR=1414.47;GTI=0;LEN=1;MEANALT=1.66667;MQM=12.3983;MQMR=21.9508;NS=3;NUMALT=1;ODDS=5.55112e-17;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=9182;QR=26021;RO=650;RPL=0;RPP=504.62;RPPR=1414.47;RPR=231;RUN=1;SAF=231;SAP=504.62;SAR=0;SRF=650;SRP=1414.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:301:238,61:238:9516:61:2415:0,-16.8868,-320.161 0/0:248:184,64:184:7370:64:2541:0,-7.66665,-277.862 0/1:334:228,106:228:9135:106:4226:-16.9526,0,-326.389 dDocent_Contig_1600 50 . G T 55.345 . AB=0.285714;ABP=8.59409;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=72;DPB=72;DPRA=0.482759;EPP=3.0103;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=32;MQMR=54.9118;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.882353;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=2649;RO=68;RPL=4;RPP=11.6962;RPPR=150.67;RPR=0;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:34,0:34:1321:0:0:0,-10.235,-119.159 0/1:14:10,4:10:390:4:158:-7.35841,0,-28.4199 0/0:24:24,0:24:938:0:0:0,-7.22472,-70.5379 dDocent_Contig_1601 36 . A G 731.725 . AB=0.304762;ABP=37.7745;AC=3;AF=0.5;AN=6;AO=32;CIGAR=1X1M2X;DP=105;DPB=105;DPRA=0;EPP=72.4974;EPPR=144.156;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.953846;PAO=0;PQA=0;PQR=0;PRO=0;QA=1199;QR=2507;RO=65;RPL=0;RPP=72.4974;RPPR=144.156;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:25:18,6,1:18:680:6,1:220,38:-12.547,0,-53.9254,-14.8471,-52.6149,-70.2881 0|1:43:17,22,1:17:655:22,1:842,39:-63.9791,0,-47.1694,-65.8903,-50.5858,-119.373 0|1:37:30,4,3:30:1172:4,3:137,119:-2.05037,0,-95.1384,-1.2624,-86.5463,-96.7498 dDocent_Contig_1602 76 . G A 444.095 . AB=0.333333;ABP=18.9344;AC=1;AF=0.166667;AN=6;AO=22;CIGAR=1X;DP=198;DPB=198;DPRA=1;EPP=50.7827;EPPR=385.189;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=731;QR=6071;RO=176;RPL=22;RPP=50.7827;RPPR=385.189;RPR=0;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=176;SRP=385.189;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:73:73,0:73:2479:0:0:0,-21.9752,-223.365 0/0:59:59,0:59:2066:0:0:0,-17.7608,-186.211 0/1:66:44,22:44:1526:22:731:-46.2334,0,-117.767 dDocent_Contig_1603 9 . T C 18658.2 . AB=0.0326188;ABP=2038.91;AC=0;AF=0;AN=6;AO=35;CIGAR=1X1M1X2M1I4M;DP=1073;DPB=1084.11;DPRA=0;EPP=79.0118;EPPR=42.0968;GTI=0;LEN=1;MEANALT=32;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=4.44089e-16;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1323;QR=698;RO=18;RPL=0;RPP=79.0118;RPPR=42.0968;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:366:3,9,21,11,35,169:3:117:9,21,11,35,169:342,809,413,1373,6556:-639.789,-612.644,-619.552,-574.266,-555.835,-577.562,-606.86,-588.43,-550.052,-613.167,-527.779,-509.349,-470.97,-503.565,-526.861,-103.295,-84.8654,-46.4871,-79.0818,0,-62.039 0|0:252:8,15,9,16,11,120:8:305:15,9,16,11,120:577,354,593,421,4665:-403.993,-359.029,-379.533,-377.281,-354.928,-399.591,-357.889,-335.535,-353.787,-378.091,-371.855,-349.501,-367.753,-348.361,-393.563,-23.4927,-1.13928,-19.3912,0,-13.9652,-12.3883 0|0:455:7,11,18,30,17,236:7:276:11,18,30,17,236:404,712,1146,651,9231:-827.55,-796.637,-816.034,-771.059,-760.747,-788.349,-735.631,-725.319,-699.742,-749.309,-776.246,-765.935,-740.357,-704.929,-793.837,-71.3167,-61.0059,-35.4272,0,-40.6148,-22.9824 dDocent_Contig_1604 9 . T G 127.121 . AB=0.173913;ABP=45.4956;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=130;DPB=130;DPRA=1.09524;EPP=20.3821;EPPR=267.93;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=308;QR=4664;RO=122;RPL=0;RPP=20.3821;RPPR=267.93;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=122;SRP=267.93;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:38,8:38:1446:8:308:-14.235,0,-116.573 0/0:38:38,0:38:1459:0:0:0,-11.4391,-131.588 0/0:46:46,0:46:1759:0:0:0,-13.8474,-158.565 dDocent_Contig_1605 8 . T C 97.7866 . AB=0.227273;ABP=17.2236;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=40;DPB=40;DPRA=2.44444;EPP=13.8677;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.971429;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=1312;RO=35;RPL=0;RPP=13.8677;RPPR=79.0118;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:17,5:17:632:5:195:-11.3015,0,-50.5903 0/0:8:8,0:8:304:0:0:0,-2.40824,-27.7191 0/0:10:10,0:10:376:0:0:0,-3.0103,-34.19 dDocent_Contig_1606 55 . C G 65.5797 . AB=0.151515;ABP=37.8197;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=114;DPB=114;DPRA=0.814815;EPP=13.8677;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=196;QR=4312;RO=109;RPL=5;RPP=13.8677;RPPR=239.701;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:28,5:28:1121:5:196:-8.08085,0,-91.2422 0/0:54:54,0:54:2122:0:0:0,-16.2556,-191.172 0/0:27:27,0:27:1069:0:0:0,-8.12781,-96.5001 dDocent_Contig_1607 7 . C T 30734.2 . AB=0.644139;ABP=304.736;AC=3;AF=0.5;AN=6;AO=1077;CIGAR=1X;DP=1672;DPB=1672;DPRA=0;EPP=2341.69;EPPR=1279.84;GTI=0;LEN=1;MEANALT=1.66667;MQM=55.8812;MQMR=59.6786;NS=3;NUMALT=1;ODDS=0;PAIRED=0.95636;PAIREDR=0.969388;PAO=0;PQA=0;PQR=0;PRO=0;QA=40726;QR=22379;RO=588;RPL=0;RPP=2341.69;RPPR=1279.84;RPR=1077;RUN=1;SAF=1077;SAP=2341.69;SAR=0;SRF=588;SRP=1279.84;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:431:193,238:193:7320:238:8994:-667.331,0,-528.261 0/1:526:154,369:154:5793:369:13899:-1052.99,0,-363.463 0/1:715:241,470:241:9266:470:17833:-1358.62,0,-617.038 dDocent_Contig_1608 93 . G A 383.735 . AB=0.25;ABP=55.1256;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=96;DPB=96;DPRA=0;EPP=55.1256;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=798;QR=2421;RO=72;RPL=24;RPP=55.1256;RPPR=159.356;RPR=0;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:23,13:23:766:13:439:-28.9965,0,-58.4144 0/1:20:16,4:16:547:4:140:-6.92433,0,-43.5339 0/1:40:33,7:33:1108:7:219:-7.97552,0,-87.9818 dDocent_Contig_1609 8 . T C 2576.98 . AB=0.535294;ABP=4.84966;AC=3;AF=0.5;AN=6;AO=91;CIGAR=1X;DP=170;DPB=170;DPRA=0;EPP=200.614;EPPR=172.385;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3482;QR=2964;RO=78;RPL=0;RPP=200.614;RPPR=172.385;RPR=91;RUN=1;SAF=91;SAP=200.614;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:35,29:35:1328:29:1116:-81.2993,0,-100.367 0/1:43:20,23:20:760:23:862:-64.9527,0,-55.7831 0/1:62:23,39:23:876:39:1504:-116.969,0,-60.4944 dDocent_Contig_1610 7 . T C 79770.2 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=2425;CIGAR=1X;DP=2553;DPB=2553;DPRA=0;EPP=5268.83;EPPR=198.443;GTI=0;LEN=1;MEANALT=2.33333;MQM=59.8944;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.97732;PAIREDR=0.933333;PAO=0;PQA=0;PQR=0;PRO=0;QA=92187;QR=3445;RO=90;RPL=0;RPP=5268.83;RPPR=198.443;RPR=2425;RUN=1;SAF=2425;SAP=5268.83;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:880:18,845:18:686:845:31880:-2802.58,-198.094,0 1/1:650:30,611:30:1154:611:23143:-1977.37,-89.1839,0 1/1:1023:42,969:42:1605:969:37164:-3196.6,-159.974,0 dDocent_Contig_1612 79 . G A 173.315 . AB=0.380952;ABP=5.59539;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=91;DPB=91;DPRA=0.6;EPP=20.3821;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=276;QR=2757;RO=83;RPL=8;RPP=20.3821;RPPR=183.243;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:13,8:13:416:8:276:-18.8544,0,-31.4259 0/0:47:47,0:47:1565:0:0:0,-14.1484,-141.14 0/0:23:23,0:23:776:0:0:0,-6.92369,-70.154 dDocent_Contig_1613 42 . G A 120.402 . AB=0.3125;ABP=7.89611;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=68;DPB=68;DPRA=0.615385;EPP=13.8677;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.968254;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=2410;RO=63;RPL=5;RPP=13.8677;RPPR=139.813;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:11,5:11:413:5:200:-13.5631,0,-32.7034 0/0:35:35,0:35:1341:0:0:0,-10.536,-120.973 0/0:17:17,0:17:656:0:0:0,-5.11751,-59.375 dDocent_Contig_1614 132 . T C 55.4715 . AB=0.25;ABP=13.8677;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=27;DPB=27;DPRA=1.42857;EPP=13.8677;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=50.4;MQMR=59.5909;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.909091;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=742;RO=22;RPL=0;RPP=13.8677;RPPR=50.7827;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:238:0:0:0,-2.10721,-21.7525 0/1:11:9,2:9:301:2:66:-2.90326,0,-24.1038 0/1:9:6,3:6:203:3:95:-6.14902,0,-15.8889 dDocent_Contig_1615 98 . N T 449.13 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=15;CIGAR=2X;DP=15;DPB=15;DPRA=0;EPP=35.5824;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=483;QR=0;RO=0;RPL=15;RPP=35.5824;RPPR=0;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:9:0,9:0:0:9:285:-25.9605,-2.70927,0 1|1:3:0,3:0:0:3:96:-8.95804,-0.90309,0 1|1:3:0,3:0:0:3:102:-9.51695,-0.90309,0 dDocent_Contig_1616 114 . C G 2397.16 . AB=0.726562;ABP=60.0793;AC=3;AF=0.5;AN=6;AO=93;CIGAR=1X;DP=128;DPB=128;DPRA=0;EPP=204.957;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3142;QR=1182;RO=35;RPL=0;RPP=204.957;RPPR=79.0118;RPR=93;RUN=1;SAF=0;SAP=204.957;SAR=93;SRF=0;SRP=79.0118;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:15,22:15:504:22:756:-57.2212,0,-34.543 0/1:28:13,15:13:447:15:464:-33.628,0,-32.1309 0/1:63:7,56:7:231:56:1922:-154.298,0,-2.1485 dDocent_Contig_1617 8 . T C 413.673 . AB=0.271429;ABP=34.7758;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1M1X3M;DP=70;DPB=70;DPRA=0;EPP=28.7251;EPPR=83.3548;GTI=0;LEN=1;MEANALT=3.33333;MQM=58.1053;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=0.894737;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=710;QR=1420;RO=37;RPL=0;RPP=44.2683;RPPR=83.3548;RPR=19;RUN=1;SAF=17;SAP=28.7251;SAR=2;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:25:17,0,0,2,5,0:17:657:0,0,2,5,0:0,0,75,190,0:-10.47,-15.5875,-69.5574,-15.5875,-69.5574,-69.5574,-9.4448,-63.4149,-63.4149,-62.8128,0,-53.976,-53.976,-47.8337,-52.4708,-15.5875,-69.5574,-69.5574,-63.4149,-53.976,-69.5574 0|1:17:5,2,2,0,4,3:5:193:2,2,0,4,3:77,77,0,148,117:-10.5965,-5.77857,-21.0289,-5.78389,-15.3135,-21.0342,-12.1016,-21.6309,-21.6362,-27.9536,0,-9.52809,-9.5334,-15.8501,-14.646,-2.4879,-12.0181,-12.0234,-18.3411,-6.23824,-17.438 0|1:28:15,0,3,0,10,0:15:570:0,3,0,10,0:0,117,0,372,0:-25.8232,-30.3387,-77.0865,-20.7167,-67.4674,-66.5643,-30.3387,-77.0865,-67.4674,-77.0865,0,-46.737,-37.1177,-46.737,-43.7267,-30.3387,-77.0865,-67.4674,-77.0865,-46.737,-77.0865 dDocent_Contig_1618 7 . C T 606.946 . AB=0.380952;ABP=10.7656;AC=2;AF=0.333333;AN=6;AO=26;CIGAR=1X;DP=91;DPB=91;DPRA=0;EPP=59.4686;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=58.9615;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1000;QR=2451;RO=65;RPL=0;RPP=59.4686;RPPR=144.156;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:28,20:28:1053:20:772:-54.8674,0,-80.6291 0/0:28:26,2:26:972:2:78:0,-1.02537,-80.3876 0/1:15:11,4:11:426:4:150:-9.34992,0,-34.1793 dDocent_Contig_1619 8 . T G 5160.77 . AB=0.776256;ABP=148.182;AC=2;AF=0.333333;AN=6;AO=170;CIGAR=1X3M1X;DP=251;DPB=251;DPRA=3.42188;EPP=372.161;EPPR=176.728;GTI=0;LEN=1;MEANALT=1.5;MQM=47.7529;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.00588235;PAIREDR=0.8125;PAO=0;PQA=0;PQR=0;PRO=0;QA=6598;QR=3043;RO=80;RPL=0;RPP=372.161;RPPR=176.728;RPR=170;RUN=1;SAF=170;SAP=372.161;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:32:32,0:32:1207:0:0:0,-9.63296,-108.911 0|1:31:25,6:25:953:6:231:-11.6381,0,-76.7481 0|1:188:23,164:23:883:164:6367:-507.962,0,-23.1059 dDocent_Contig_1620 1 . N G 74.9872 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:79:-7.49763,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_1621 168 . N G 273.178 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.571429;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=285;QR=0;RO=0;RPL=7;RPP=18.2106;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:121:-11.2802,-0.90309,0 1/1:3:0,3:0:0:3:123:-11.4648,-0.90309,0 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 dDocent_Contig_1622 73 . C T 102.26 . AB=0.2;ABP=38.1882;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=65;DPB=65;DPRA=4.5;EPP=22.5536;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=281;QR=1798;RO=56;RPL=9;RPP=22.5536;RPPR=124.613;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:394:0:0:0,-3.61236,-35.7783 0/0:8:8,0:8:272:0:0:0,-2.40824,-24.8118 0/1:45:36,9:36:1132:9:281:-12.0499,0,-88.6179 dDocent_Contig_1623 14 . A G 83.0856 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=32.5;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:40:-3.85447,-0.30103,0 ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:80:-4.15166,-0.90309,0 dDocent_Contig_1625 14 . T A 986.263 . AB=0.507246;ABP=3.04177;AC=3;AF=0.5;AN=6;AO=35;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=79.0118;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1376;QR=1367;RO=34;RPL=0;RPP=79.0118;RPPR=76.8404;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:23,8:23:921:8:314:-19.2925,0,-73.8653 0/1:17:2,15:2:82:15:586:-47.959,0,-2.66217 0/1:21:9,12:9:364:12:476:-36.8673,0,-26.8029 dDocent_Contig_1626 40 . G T 187.339 . AB=0.275862;ABP=15.6647;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=86;DPB=86;DPRA=1.01754;EPP=20.3821;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=318;QR=2952;RO=77;RPL=0;RPP=20.3821;RPPR=170.214;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:21,8:21:795:8:318:-20.2568,0,-63.1411 0/0:30:29,0:29:1131:0:0:0,-8.72987,-101.688 0/0:27:27,0:27:1026:0:0:0,-8.12781,-92.646 dDocent_Contig_1629 14 . C T 262.664 . AB=0.146341;ABP=136.635;AC=2;AF=0.333333;AN=6;AO=21;CIGAR=1X2M;DP=163;DPB=163;DPRA=0;EPP=48.6112;EPPR=280.959;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.857143;PAIREDR=0.867188;PAO=0;PQA=0;PQR=0;PRO=0;QA=822;QR=5088;RO=128;RPL=0;RPP=48.6112;RPPR=280.959;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=128;SRP=280.959;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:63:57,0,6:57:2257:0,6:0,224:-1.54812,-18.7068,-204.487,0,-186.155,-184.349 0|0:40:34,3,3:34:1343:3,3:120,122:0,-0.35328,-109.949,-0.168477,-100.787,-109.77 0|1:60:37,11,12:37:1488:11,12:445,476:-28.0401,-2.48357,-121.801,0,-85.9312,-119.01 dDocent_Contig_1630 135 . C A 382.246 . AB=0.409091;ABP=6.16881;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X;DP=44;DPB=44;DPRA=0;EPP=42.0968;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=622;QR=902;RO=26;RPL=0;RPP=42.0968;RPPR=59.4686;RPR=18;RUN=1;SAF=0;SAP=42.0968;SAR=18;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:9,5:9:307:5:179:-12.246,0,-23.7465 0/1:11:5,6:5:178:6:195:-14.5566,0,-13.0573 0/1:19:12,7:12:417:7:248:-16.9448,0,-32.1421 dDocent_Contig_1631 7 . T C 27487.3 . AB=0.404177;ABP=220.658;AC=3;AF=0.5;AN=6;AO=1103;CIGAR=1X;DP=2729;DPB=2729;DPRA=0;EPP=2398.14;EPPR=3518.62;GTI=0;LEN=1;MEANALT=2;MQM=54.0372;MQMR=57.6504;NS=3;NUMALT=1;ODDS=0;PAIRED=0.964642;PAIREDR=0.994441;PAO=0;PQA=0;PQR=0;PRO=0;QA=41925;QR=61126;RO=1619;RPL=0;RPP=2398.14;RPPR=3518.62;RPR=1103;RUN=1;SAF=1103;SAP=2398.14;SAR=0;SRF=1619;SRP=3518.62;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:1207:750,453:750:28202:453:17166:-1125.98,0,-2156.36 0/1:642:357,283:357:13432:283:10713:-709.491,0,-998.779 0/1:880:512,367:512:19492:367:14046:-918.775,0,-1457.51 dDocent_Contig_1632 200 . G A 246.772 . AB=0.305556;ABP=14.8328;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=91;DPB=91;DPRA=2.17647;EPP=29.068;EPPR=165.981;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.974684;PAO=0;PQA=0;PQR=0;PRO=0;QA=446;QR=2903;RO=79;RPL=12;RPP=29.068;RPPR=174.557;RPR=0;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=1;SRP=165.981;SRR=78;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:616:0:0:0,-5.11751,-55.7659 0/0:38:37,1:37:1374:1:35:0,-7.94051,-120.44 0/1:36:25,11:25:913:11:411:-26.5011,0,-71.6356 dDocent_Contig_1633 20 . C A 299.749 . AB=0.2;ABP=65.5487;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=37.7539;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.9375;PAO=0;PQA=0;PQR=0;PRO=0;QA=630;QR=2562;RO=64;RPL=0;RPP=37.7539;RPPR=141.985;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:23,8:23:919:8:312:-19.1111,0,-73.684 0/1:24:18,6:18:709:6:236:-14.3841,0,-56.9132 0/1:25:23,2:23:934:2:82:-0.253928,0,-76.8358 dDocent_Contig_1634 204 . T C 84.8969 . AB=0.1875;ABP=30.1537;AC=3;AF=0.5;AN=6;AO=6;CIGAR=1X;DP=32;DPB=32;DPRA=0;EPP=16.0391;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=218;QR=884;RO=26;RPL=6;RPP=16.0391;RPPR=59.4686;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:7,4:7:223:4:144:-10.0021,0,-17.0681 0/1:10:9,1:9:325:1:37:-0.687529,0,-26.5859 0/1:11:10,1:10:336:1:37:-0.386499,0,-27.2483 dDocent_Contig_1635 175 . C T 133.191 . AB=0.25;ABP=16.0391;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=3X;DP=101;DPB=101;DPRA=0.623377;EPP=16.0391;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=3742;RO=95;RPL=6;RPP=16.0391;RPPR=209.3;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=209.3;SRR=95;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:24:18,6:18:706:6:241:-14.842,0,-56.6468 0|0:35:35,0:35:1367:0:0:0,-10.536,-123.3 0|0:42:42,0:42:1669:0:0:0,-12.6433,-150.444 dDocent_Contig_1637 19 . G T 378.33 . AB=0.171429;ABP=134.291;AC=2;AF=0.333333;AN=6;AO=26;CIGAR=1X;DP=203;DPB=203;DPRA=0;EPP=59.4686;EPPR=387.361;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.99435;PAO=0;PQA=0;PQR=0;PRO=0;QA=1000;QR=6670;RO=177;RPL=0;RPP=59.4686;RPPR=387.361;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=177;SRP=387.361;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:81:63,18:63:2339:18:689:-37.9535,0,-186.348 0/1:59:53,6:53:2012:6:231:-3.39668,0,-163.557 0/0:63:61,2:61:2319:2:80:0,-11.3733,-201.328 dDocent_Contig_1638 21 . C G 236.464 . AB=0.405405;ABP=5.88603;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=37;DPB=37;DPRA=0;EPP=35.5824;EPPR=42.4916;GTI=0;LEN=1;MEANALT=1;MQM=30.5333;MQMR=59.4091;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.954545;PAO=0;PQA=0;PQR=0;PRO=0;QA=557;QR=849;RO=22;RPL=0;RPP=35.5824;RPPR=50.7827;RPR=15;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=21;SRP=42.4916;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:266:2:78:-2.89298,0,-21.581 0/1:16:12,4:12:467:4:128:-5.69234,0,-37.5504 0/1:12:3,9:3:116:9:351:-20.5658,0,-7.20392 dDocent_Contig_1639 98 . N G 889.667 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=31;CIGAR=1X;DP=31;DPB=31;DPRA=0;EPP=70.3259;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=973;QR=0;RO=0;RPL=31;RPP=70.3259;RPPR=0;RPR=0;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:8:0,8:0:0:8:249:-22.7154,-2.40824,0 1/1:16:0,16:0:0:16:499:-45.2081,-4.81648,0 1/1:7:0,7:0:0:7:225:-20.5661,-2.10721,0 dDocent_Contig_1641 56 . T C 68.9875 . AB=0.192308;ABP=24.391;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=60;DPB=60;DPRA=1.52941;EPP=13.8677;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=180;QR=2019;RO=55;RPL=5;RPP=13.8677;RPPR=122.441;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:882:0:0:0,-7.22472,-79.6864 0/1:26:21,5:21:766:5:180:-8.72265,0,-61.4322 0/0:10:10,0:10:371:0:0:0,-3.0103,-33.7379 dDocent_Contig_1642 139 . A G 153.568 . AB=0.347826;ABP=7.63648;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=38;DPB=38;DPRA=0.766667;EPP=20.3821;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=1046;RO=30;RPL=0;RPP=20.3821;RPPR=68.1545;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:9,2:9:318:2:69:-3.24133,0,-25.6497 0/0:15:15,0:15:513:0:0:0,-4.51545,-46.4933 0/1:12:6,6:6:215:6:210:-15.6301,0,-16.0868 dDocent_Contig_1644 98 . N C 1056.68 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=34;CIGAR=1X;DP=34;DPB=34;DPRA=0;EPP=76.8404;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1158;QR=0;RO=0;RPL=34;RPP=76.8404;RPPR=0;RPR=0;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:18:0,18:0:0:18:626:-56.6665,-5.41854,0 1/1:11:0,11:0:0:11:370:-33.6249,-3.31133,0 1/1:5:0,5:0:0:5:162:-14.8995,-1.50515,0 dDocent_Contig_1646 41 . G A 61.4317 . AB=0.333333;ABP=6.62942;AC=0;AF=0;AN=6;AO=5;CIGAR=1M2X2M1D3M1X1M1X;DP=68;DPB=66.6667;DPRA=0;EPP=13.8677;EPPR=98.5551;GTI=0;LEN=1;MEANALT=2;MQM=16.8;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=1720;RO=44;RPL=0;RPP=13.8677;RPPR=98.5551;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:15:8,0,0,5,2:8:311:0,0,5,2:0,0,197,75:-3.79371,-6.20195,-31.8456,-6.20195,-31.8456,-31.8456,-0.306426,-25.8749,-25.8749,-24.3697,0,-25.6933,-25.6933,-19.7348,-25.0912 0|0:13:6,4,0,0,3:6:236:4,0,0,3:88,0,0,94:-5.79566,-2.03502,-20.2979,-7.60184,-21.502,-27.0848,-7.60184,-21.502,-27.0848,-27.0848,0,-13.9795,-19.5354,-19.5354,-18.6323 0|0:40:30,0,7,0,1:30:1173:0,7,0,1:0,154,0,40:-0.778099,-9.809,-106.38,0,-96.5484,-94.4412,-9.809,-106.38,-96.5484,-106.38,-6.4933,-103.084,-93.2527,-103.084,-102.783 dDocent_Contig_1647 86 . T C 226.263 . AB=0.314286;ABP=13.4954;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=95;DPB=95;DPRA=1.47917;EPP=31.2394;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=455;QR=2816;RO=82;RPL=13;RPP=31.2394;RPPR=181.071;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:817:0:0:0,-7.22472,-73.8444 0/0:36:34,2:34:1165:2:70:0,-4.18968,-98.5068 0/1:35:24,11:24:834:11:385:-24.4502,0,-64.8431 dDocent_Contig_1648 189 . G A 93.2989 . AB=0.1875;ABP=30.1537;AC=3;AF=0.5;AN=6;AO=6;CIGAR=1X;DP=32;DPB=32;DPRA=0;EPP=16.0391;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=964;RO=26;RPL=6;RPP=16.0391;RPPR=59.4686;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:11,1:11:435:1:40:-0.383319,0,-35.8918 0/1:12:10,2:10:347:2:78:-3.79042,0,-27.9389 0/1:8:5,3:5:182:3:123:-9.05655,0,-14.3168 dDocent_Contig_1649 110 . G A 303.361 . AB=0.481481;ABP=3.09072;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=43;DPB=43;DPRA=3.375;EPP=31.2394;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=444;QR=993;RO=30;RPL=0;RPP=31.2394;RPPR=68.1545;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:306:0:0:0,-3.0103,-27.8384 0/0:6:6,0:6:202:0:0:0,-1.80618,-18.511 0/1:27:14,13:14:485:13:444:-32.16,0,-35.8525 dDocent_Contig_1652 115 . C A 46.3861 . AB=0.153846;ABP=57.1301;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X3M1X1M1X;DP=52;DPB=52;DPRA=0;EPP=20.3821;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=275;QR=1545;RO=44;RPL=0;RPP=20.3821;RPPR=98.5551;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=98.5551;SRR=44;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:18:15,3:15:528:3:101:-4.00459,0,-42.4331 0|1:14:12,2:12:420:2:72:-2.6223,0,-33.92 0|1:20:17,3:17:597:3:102:-3.49578,0,-48.0376 dDocent_Contig_1653 107 . N T 101.644 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=102;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:67:-6.36304,-0.60206,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_1654 98 . N A 37.0552 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=39;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:39:-3.70435,-0.60206,0 dDocent_Contig_1656 159 . A C 41.3008 . AB=0.157895;ABP=22.325;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=45;DPB=45;DPRA=1.46154;EPP=9.52472;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1635;RO=42;RPL=3;RPP=9.52472;RPPR=94.2121;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=94.2121;SRR=42;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:16,3:16:619:3:122:-5.65292,0,-50.3227 0/0:13:13,0:13:494:0:0:0,-3.91339,-44.8011 0/0:13:13,0:13:522:0:0:0,-3.91339,-47.3246 dDocent_Contig_1657 108 . A T 409.059 . AB=0.285714;ABP=33.7211;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1X;DP=77;DPB=77;DPRA=0;EPP=50.7827;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.863636;PAIREDR=0.909091;PAO=0;PQA=0;PQR=0;PRO=0;QA=762;QR=1821;RO=55;RPL=0;RPP=50.7827;RPPR=122.441;RPR=22;RUN=1;SAF=0;SAP=50.7827;SAR=22;SRF=0;SRP=122.441;SRR=55;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:23,13:23:748:13:445:-29.5397,0,-56.7857 0/1:22:19,3:19:623:3:104:-3.08043,0,-49.757 0/1:19:13,6:13:450:6:213:-13.7968,0,-35.1114 dDocent_Contig_1658 16 . G A 858.696 . AB=0.149733;ABP=401.563;AC=3;AF=0.5;AN=6;AO=56;CIGAR=1X;DP=374;DPB=374;DPRA=0;EPP=124.613;EPPR=682.681;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.99361;PAO=0;PQA=0;PQR=0;PRO=0;QA=2248;QR=12375;RO=313;RPL=0;RPP=124.613;RPPR=682.681;RPR=56;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=313;SRP=682.681;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:107:92,15:92:3654:15:592:-21.4082,0,-296.675 0/1:117:94,21:94:3710:21:840:-40.8883,0,-298.907 0/1:150:127,20:127:5011:20:816:-29.0959,0,-406.224 dDocent_Contig_1660 42 . G A 179.255 . AB=0.2;ABP=42.0968;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=63;DPB=63;DPRA=1.92308;EPP=24.725;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.3;PAIREDR=0.886792;PAO=0;PQA=0;PQR=0;PRO=0;QA=397;QR=2101;RO=53;RPL=0;RPP=24.725;RPPR=118.098;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:13,2:13:522:2:80:-3.07634,0,-42.8123 0/1:35:27,8:27:1061:8:317:-18.36,0,-85.2489 0/0:13:13,0:13:518:0:0:0,-3.91339,-46.9678 dDocent_Contig_1661 7 . C A 2217.14 . AB=0.527027;ABP=3.94932;AC=3;AF=0.5;AN=6;AO=78;CIGAR=2X1M;DP=148;DPB=148;DPRA=0;EPP=172.385;EPPR=137.642;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2987;QR=2346;RO=62;RPL=0;RPP=172.385;RPPR=137.642;RPR=78;RUN=1;SAF=78;SAP=172.385;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:43:10,6,25:10:370:6,25:231,951:-74.9883,-59.0305,-87.4907,0,-11.2907,-22.7371 0|1:44:23,0,21:23:863:0,21:0,797:-58.8078,-65.7314,-136.422,0,-71.0677,-64.746 0|1:61:29,0,32:29:1113:0,32:0,1239:-93.4405,-102.17,-193.53,0,-91.745,-82.112 dDocent_Contig_1662 15 . G C 40.3241 . AB=0.2;ABP=14.7363;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=33;DPB=33;DPRA=1.66667;EPP=9.52472;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=108;QR=1196;RO=30;RPL=0;RPP=9.52472;RPPR=68.1545;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:12,3:12:469:3:108:-5.55524,0,-38.0424 0/0:8:8,0:8:323:0:0:0,-2.40824,-29.4381 0/0:10:10,0:10:404:0:0:0,-3.0103,-36.7201 dDocent_Contig_1663 76 . C T 59.2994 . AB=0.134615;ABP=63.3104;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=2X;DP=119;DPB=119;DPRA=0;EPP=24.725;EPPR=237.529;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=352;QR=3905;RO=108;RPL=10;RPP=24.725;RPPR=237.529;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:52:44,7:44:1597:7:251:-7.45279,0,-128.56 0|0:41:40,1:40:1466:1:37:0,-8.6444,-128.535 0|0:26:24,2:24:842:2:64:0,-1.74823,-70.0202 dDocent_Contig_1664 77 . C T 811.615 . AB=0.260606;ABP=85.1446;AC=3;AF=0.5;AN=6;AO=43;CIGAR=1X;DP=165;DPB=165;DPRA=0;EPP=96.3836;EPPR=267.93;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1504;QR=4342;RO=122;RPL=43;RPP=96.3836;RPPR=267.93;RPR=0;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=122;SRP=267.93;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:43,16:43:1538:16:561:-33.0562,0,-120.949 0/1:32:14,18:14:498:18:620:-46.4893,0,-35.5226 0/1:74:65,9:65:2306:9:323:-7.13885,0,-185.526 dDocent_Contig_1665 33 . C T 158.35 . AB=0.242424;ABP=22.0271;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=22.5536;EPPR=83.5666;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.888889;PAIREDR=0.95122;PAO=0;PQA=0;PQR=0;PRO=0;QA=345;QR=1646;RO=41;RPL=0;RPP=22.5536;RPPR=92.0407;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=40;SRP=83.5666;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:17,4:17:689:4:157:-8.1868,0,-56.0179 0/1:12:8,4:8:317:4:160:-11.1711,0,-25.2842 0/0:17:16,1:16:640:1:28:0,-2.31778,-55.1352 dDocent_Contig_1667 98 . N T 336.367 . AB=0;ABP=0;AC=4;AF=0.666667;AN=6;AO=11;CIGAR=1X;DP=12;DPB=12;DPRA=5.5;EPP=26.8965;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=360;QR=0;RO=0;RPL=11;RPP=26.8965;RPPR=0;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:7:0,7:0:0:7:239:-21.844,-2.10721,0 1/1:4:0,4:0:0:4:121:-11.1894,-1.20412,0 0/0:1:0,0:0:0:0:0:0,0,0 dDocent_Contig_1669 28 . G A 4610.5 . AB=0.594595;ABP=23.1404;AC=3;AF=0.5;AN=6;AO=154;CIGAR=1X;DP=259;DPB=259;DPRA=0;EPP=337.417;EPPR=231.015;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6044;QR=4154;RO=105;RPL=0;RPP=337.417;RPPR=231.015;RPR=154;RUN=1;SAF=154;SAP=337.417;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:84:28,56:28:1114:56:2168:-170.026,0,-75.2603 0/1:48:23,25:23:891:25:943:-70.7168,0,-66.0409 0/1:127:54,73:54:2149:73:2933:-225.83,0,-155.359 dDocent_Contig_1670 12 . A T 741.188 . AB=0.333333;ABP=24.725;AC=3;AF=0.5;AN=6;AO=30;CIGAR=1X;DP=90;DPB=90;DPRA=0;EPP=68.1545;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1164;QR=2371;RO=60;RPL=0;RPP=68.1545;RPPR=133.299;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:29,3:29:1144:3:115:-1.09025,0,-93.6061 0/1:23:15,8:15:589:8:316:-21.8809,0,-46.4262 0/1:35:16,19:16:638:19:733:-55.7433,0,-47.2188 dDocent_Contig_1672 53 . G T 1575.55 . AB=0.528846;ABP=3.76196;AC=3;AF=0.5;AN=6;AO=55;CIGAR=1X;DP=104;DPB=104;DPRA=0;EPP=122.441;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2149;QR=1882;RO=49;RPL=55;RPP=122.441;RPPR=109.412;RPR=0;RUN=1;SAF=55;SAP=122.441;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:26,8:26:1020:8:310:-18.0253,0,-81.8614 0/1:28:7,21:7:258:21:824:-66.0511,0,-15.1437 0/1:42:16,26:16:604:26:1015:-79.0014,0,-42.0436 dDocent_Contig_1673 34 . C T 802.749 . AB=0.586957;ABP=6.03148;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=61.6401;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1095;QR=737;RO=19;RPL=0;RPP=61.6401;RPPR=44.2683;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:9,8:9:353:8:324:-24.4119,0,-27.0136 0/1:16:6,10:6:229:10:405:-31.9941,0,-16.1558 0/1:13:4,9:4:155:9:366:-29.3918,0,-10.4101 dDocent_Contig_1674 189 . A C 3485.37 . AB=0.772152;ABP=53.8337;AC=4;AF=0.666667;AN=6;AO=110;CIGAR=1X;DP=132;DPB=132;DPRA=0;EPP=241.872;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4335;QR=890;RO=22;RPL=110;RPP=241.872;RPPR=50.7827;RPR=0;RUN=1;SAF=0;SAP=241.872;SAR=110;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:6,21:6:238:21:825:-66.4355,0,-13.6656 0/1:52:12,40:12:489:40:1552:-124.273,0,-28.7078 1/1:53:4,49:4:163:49:1958:-161.351,-0.896163,0 dDocent_Contig_1675 98 . N A 117.946 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:68:-6.45788,-0.60206,0 1/1:2:0,2:0:0:2:53:-5.03457,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_1676 20 . G A 47.3739 . AB=0.118644;ABP=77.5396;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=149;DPB=149;DPRA=1.31111;EPP=18.2106;EPPR=311.359;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=263;QR=5590;RO=142;RPL=0;RPP=18.2106;RPPR=311.359;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=142;SRP=311.359;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:52,7:52:2055:7:263:-6.26026,0,-167.385 0/0:38:38,0:38:1505:0:0:0,-11.4391,-135.695 0/0:52:52,0:52:2030:0:0:0,-15.6536,-182.883 dDocent_Contig_1677 47 . G A 62.9661 . AB=0.137255;ABP=61.2994;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=93;DPB=93;DPRA=0;EPP=22.5536;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=354;QR=3235;RO=84;RPL=0;RPP=22.5536;RPPR=185.414;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:40,2:40:1536:2:81:0,-4.95753,-130.798 0/1:21:17,4:17:636:4:155:-8.00273,0,-51.2337 0/1:30:27,3:27:1063:3:118:-1.97068,0,-86.931 dDocent_Contig_1678 30 . C A 1997.97 . AB=0.59292;ABP=11.4848;AC=3;AF=0.5;AN=6;AO=67;CIGAR=1X;DP=113;DPB=113;DPRA=0;EPP=148.499;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2649;QR=1812;RO=46;RPL=0;RPP=148.499;RPPR=102.898;RPR=67;RUN=1;SAF=67;SAP=148.499;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:9,22:9:352:22:873:-69.5521,0,-22.7076 0/1:46:15,31:15:585:31:1224:-96.588,0,-39.1377 0/1:36:22,14:22:875:14:552:-39.1799,0,-68.2239 dDocent_Contig_1679 165 . G A 591.031 . AB=0.311688;ABP=26.7273;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=77;DPB=77;DPRA=0;EPP=55.1256;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=954;QR=2047;RO=53;RPL=24;RPP=55.1256;RPPR=118.098;RPR=0;RUN=1;SAF=0;SAP=55.1256;SAR=24;SRF=0;SRP=118.098;SRR=53;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:12,19:12:447:19:770:-60.288,0,-31.234 0/1:20:18,2:18:702:2:76:-1.19294,0,-57.4828 0/1:26:23,3:23:898:3:108:-2.24391,0,-73.296 dDocent_Contig_1680 37 . A C 2355.31 . AB=0.675439;ABP=33.4871;AC=3;AF=0.5;AN=6;AO=77;CIGAR=1X;DP=114;DPB=114;DPRA=0;EPP=170.214;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3050;QR=1481;RO=37;RPL=0;RPP=170.214;RPPR=83.3548;RPR=77;RUN=1;SAF=77;SAP=170.214;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:21,31:21:840:31:1201:-92.6995,0,-60.2599 0/1:26:11,15:11:447:15:598:-46.3322,0,-32.7591 0/1:36:5,31:5:194:31:1251:-102.022,0,-6.99053 dDocent_Contig_1681 109 . C T 142.365 . AB=0.388889;ABP=4.9405;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=57;DPB=57;DPRA=0.923077;EPP=18.2106;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=235;QR=1624;RO=50;RPL=0;RPP=18.2106;RPPR=111.584;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=111.584;SRR=50;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:32,0:32:1020:0:0:0,-9.63296,-92.0928 0/1:18:11,7:11:361:7:235:-16.0604,0,-27.3911 0/0:7:7,0:7:243:0:0:0,-2.10721,-22.2088 dDocent_Contig_1682 7 . C T 842.238 . AB=0.124638;ABP=847.442;AC=2;AF=0.333333;AN=6;AO=115;CIGAR=1X;DP=1100;DPB=1100;DPRA=0;EPP=252.73;EPPR=2042.25;GTI=0;LEN=1;MEANALT=2;MQM=57.3304;MQMR=59.7727;NS=3;NUMALT=1;ODDS=0;PAIRED=0.895652;PAIREDR=0.965589;PAO=0;PQA=0;PQR=0;PRO=0;QA=4403;QR=36588;RO=959;RPL=0;RPP=252.73;RPPR=2085.45;RPR=115;RUN=1;SAF=115;SAP=252.73;SAR=0;SRF=954;SRP=2042.25;SRR=5;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:410:370,29:370:14023:29:1100:0,-22.4059,-1160.92 0/1:287:242,40:242:9220:40:1541:-47.5967,0,-743.901 0/1:403:347,46:347:13345:46:1762:-40.1501,0,-1081.76 dDocent_Contig_1683 195 . C G 2343.86 . AB=0.65;ABP=26.4622;AC=3;AF=0.5;AN=6;AO=78;CIGAR=1X;DP=120;DPB=120;DPRA=0;EPP=172.385;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3057;QR=1534;RO=42;RPL=78;RPP=172.385;RPPR=94.2121;RPR=0;RUN=1;SAF=0;SAP=172.385;SAR=78;SRF=0;SRP=94.2121;SRR=42;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:9,36:9:341:36:1411:-113.71,0,-17.4965 0/1:32:13,19:13:442:19:739:-57.2036,0,-30.4599 0/1:43:20,23:20:751:23:907:-68.9947,0,-54.968 dDocent_Contig_1684 8 . T A 288.835 . AB=0.122744;ABP=345.437;AC=3;AF=0.5;AN=6;AO=34;CIGAR=1X1M;DP=277;DPB=277;DPRA=0;EPP=76.8404;EPPR=519.821;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1289;QR=9055;RO=238;RPL=0;RPP=76.8404;RPPR=519.821;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=238;SRP=519.821;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:60:49,4,7:49:1877:4,7:153,269:-7.33366,-9.52935,-162.372,0,-141.493,-151.941 0|1:95:81,0,13:81:3045:0,13:0,492:-15.9389,-40.3224,-289.791,0,-249.458,-245.545 0|1:122:108,0,14:108:4133:0,14:0,528:-11.1337,-43.645,-382.818,0,-339.551,-335.336 dDocent_Contig_1686 24 . T A 4025.31 . AB=0.62931;ABP=19.8579;AC=4;AF=0.666667;AN=6;AO=127;CIGAR=1X;DP=171;DPB=171;DPRA=0;EPP=278.787;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.984252;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4936;QR=1653;RO=44;RPL=0;RPP=278.787;RPPR=98.5551;RPR=127;RUN=1;SAF=127;SAP=278.787;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:29,19:29:1087:19:753:-53.6445,0,-83.6812 1/1:55:1,54:1:40:54:2056:-181.254,-12.561,0 0/1:68:14,54:14:526:54:2127:-171.155,0,-27.2108 dDocent_Contig_1687 166 . N G 229.634 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=237;QR=0;RO=0;RPL=6;RPP=16.0391;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 1/1:1:0,1:0:0:1:37:-3.69783,-0.30103,0 1/1:4:0,4:0:0:4:159:-14.6923,-1.20412,0 dDocent_Contig_1688 155 . T C 149.203 . AB=0.4375;ABP=3.55317;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=34;DPB=34;DPRA=1.77778;EPP=18.2106;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.740741;PAO=0;PQA=0;PQR=0;PRO=0;QA=236;QR=1025;RO=27;RPL=0;RPP=18.2106;RPPR=61.6401;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:256:0:0:0,-2.10721,-23.3919 0/1:16:9,7:9:349:7:236:-16.7442,0,-26.9544 0/0:11:11,0:11:420:0:0:0,-3.31133,-38.1526 dDocent_Contig_1689 19 . G A 249.867 . AB=0.244898;ABP=30.7077;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=139;DPB=139;DPRA=0.639344;EPP=33.4109;EPPR=274.444;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=539;QR=5024;RO=125;RPL=0;RPP=33.4109;RPPR=274.444;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=125;SRP=274.444;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:27,2:27:1073:2:81:0,-1.04414,-89.1711 0/1:49:37,12:37:1483:12:458:-26.8105,0,-118.966 0/0:61:61,0:61:2468:0:0:0,-18.3628,-222.253 dDocent_Contig_1690 13 . G A 142.037 . AB=0.25;ABP=18.2106;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=20.3821;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.973684;PAO=0;PQA=0;PQR=0;PRO=0;QA=322;QR=1506;RO=38;RPL=0;RPP=20.3821;RPPR=85.5263;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:13,4:13:519:4:160:-9.66541,0,-41.9391 0/1:11:8,3:8:321:3:122:-8.06116,0,-25.9461 0/0:18:17,1:17:666:1:40:0,-1.42286,-56.2647 dDocent_Contig_1691 58 . G A 180.441 . AB=0.133803;ABP=168.409;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=142;DPB=142;DPRA=0;EPP=44.2683;EPPR=270.101;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.886179;PAO=0;PQA=0;PQR=0;PRO=0;QA=724;QR=4638;RO=123;RPL=19;RPP=44.2683;RPPR=270.101;RPR=0;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:54,11:54:1986:11:405:-17.2179,0,-159.382 0/1:25:22,3:22:843:3:122:-3.84674,0,-68.6556 0/1:52:47,5:47:1809:5:197:-2.45226,0,-147.38 dDocent_Contig_1692 16 . T A 37.6035 . AB=0.166667;ABP=20.3821;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=79;DPB=79;DPRA=0.590164;EPP=9.52472;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.4605;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.947368;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=3022;RO=76;RPL=0;RPP=9.52472;RPPR=168.042;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1053:0:0:0,-8.12781,-95.0574 0/1:18:15,3:15:601:3:118:-5.58418,0,-48.6796 0/0:34:34,0:34:1368:0:0:0,-10.235,-123.377 dDocent_Contig_1693 91 . C A 22969.9 . AB=0.484288;ABP=9.15168;AC=3;AF=0.5;AN=6;AO=1387;CIGAR=1X1M1X;DP=2864;DPB=2868;DPRA=0;EPP=2954.35;EPPR=2112.94;GTI=0;LEN=1;MEANALT=14.6667;MQM=29.3252;MQMR=59.9413;NS=3;NUMALT=2;ODDS=0;PAIRED=0.00288392;PAIREDR=0.0058651;PAO=0;PQA=0;PQR=69;PRO=2;QA=47357;QR=34987;RO=1023;RPL=1387;RPP=3014.84;RPPR=2224.43;RPR=0;RUN=1;SAF=1380;SAP=2954.35;SAR=7;SRF=1010;SRP=2112.94;SRR=13;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:974:329,507,62:329:11236:507,62:17304,2092:-857.546,0,-759.229,-787.029,-742.302,-1680.23 0|1:1024:399,443,74:399:13673:443,74:15097,2489:-716.068,0,-975.527,-634.514,-907.227,-1721.14 0|1:866:295,437,78:295:10078:437,78:14956,2662:-728.897,0,-686.345,-601.677,-601.883,-1396.12 dDocent_Contig_1694 7 . T C 3146.67 . AB=0.711409;ABP=60.8531;AC=3;AF=0.5;AN=6;AO=106;CIGAR=1X;DP=149;DPB=149;DPRA=0;EPP=233.186;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4045;QR=1582;RO=42;RPL=0;RPP=233.186;RPPR=94.2121;RPR=106;RUN=1;SAF=106;SAP=233.186;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:26,30:26:988:30:1141:-85.9674,0,-72.2061 0/1:51:11,40:11:404:40:1524:-122.083,0,-21.3512 0/1:41:5,36:5:190:36:1380:-112.14,0,-5.12451 dDocent_Contig_1696 8 . T G 32.7096 . AB=0.173913;ABP=24.253;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=68;DPB=68;DPRA=1.02222;EPP=11.6962;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=130;QR=2407;RO=64;RPL=0;RPP=11.6962;RPPR=141.985;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:958:0:0:0,-7.52575,-86.5345 0/1:23:19,4:19:712:4:130:-5.09464,0,-57.4856 0/0:20:20,0:20:737:0:0:0,-6.0206,-66.6498 dDocent_Contig_1697 7 . T C 66618.5 . AB=0.0916988;ABP=1503.16;AC=6;AF=1;AN=6;AO=210;CIGAR=1X4M;DP=2724;DPB=2723.8;DPRA=0;EPP=459.02;EPPR=285.302;GTI=0;LEN=1;MEANALT=16;MQM=59.7524;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.947619;PAIREDR=0.976923;PAO=0;PQA=0;PQR=0;PRO=0;QA=8008;QR=4976;RO=130;RPL=0;RPP=459.02;RPPR=285.302;RPR=210;RUN=1;SAF=210;SAP=459.02;SAR=0;SRF=130;SRP=285.302;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:861:38,650,56:38:1454:650,56:24884,2123:-2101.58,-76.3508,0,-1939.25,-21.8994,-2041.71 1|1:1036:48,772,95:48:1836:772,95:29479,3614:-2526.49,-145.741,-64.0075,-2244.54,0,-2366.61 1|1:827:44,634,59:44:1686:634,59:24396,2271:-2035.3,-52.4797,0,-1862.1,-4.40072,-1982.71 dDocent_Contig_1698 11 . G A 3179.45 . AB=0.126154;ABP=792.077;AC=1;AF=0.166667;AN=6;AO=82;CIGAR=4M1X3M;DP=650;DPB=643.75;DPRA=0;EPP=111.478;EPPR=637.11;GTI=0;LEN=1;MEANALT=11;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=0.817073;PAIREDR=0.959459;PAO=0;PQA=0;PQR=0;PRO=0;QA=3192;QR=11359;RO=296;RPL=0;RPP=181.071;RPPR=645.766;RPR=82;RUN=1;SAF=73;SAP=111.478;SAR=9;SRF=295;SRP=637.11;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:239:110,7,10,57,24,2:110:4183:7,10,57,24,2:268,381,2134,920,69:-141.648,-152.768,-493.715,-143.515,-464.576,-483.559,0,-321.059,-311.807,-325.894,-99.2725,-420.333,-411.081,-267.565,-435.103,-169.157,-490.217,-480.964,-337.448,-436.722,-511.608 0|1:196:91,13,4,24,29,2:91:3482:13,4,24,29,2:488,142,915,1131,74:-65.5667,-52.9858,-334.806,-81.3951,-327.154,-365.924,-17.8972,-263.657,-292.066,-296.407,0,-245.762,-274.171,-210.674,-277.007,-86.907,-332.666,-361.075,-297.578,-279.683,-372.039 0|0:215:95,7,16,47,29,15:95:3694:7,16,47,29,15:268,641,1768,1141,559:-116.253,-122.858,-424.316,-92.0402,-373.613,-390.79,0,-281.57,-250.754,-289.414,-50.9947,-332.569,-301.752,-209.709,-345.832,-99.0924,-380.664,-349.848,-257.804,-308.803,-398.141 dDocent_Contig_1700 34 . G A 120.406 . AB=0.3125;ABP=7.89611;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=45;DPB=45;DPRA=1.10345;EPP=13.8677;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=1594;RO=40;RPL=0;RPP=13.8677;RPPR=89.8692;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:11,5:11:446:5:200:-13.5634,0,-35.6795 0/0:13:13,0:13:518:0:0:0,-3.91339,-46.9667 0/0:16:16,0:16:630:0:0:0,-4.81648,-57.0272 dDocent_Contig_1701 9 . C G 2062 . AB=0.0714286;ABP=92.3509;AC=0;AF=0;AN=6;AO=4;CIGAR=1X1M1X3M;DP=178;DPB=178;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=5;MQM=40;MQMR=0;NS=3;NUMALT=6;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:56:0,4,25,0,9,13,5:0:0:4,25,0,9,13,5:140,853,0,225,415,132:-91.1386,-80.1682,-78.9641,-32.641,-21.6663,-25.1153,-91.1386,-80.1682,-32.641,-91.1386,-75.1612,-64.191,-16.6736,-75.1612,-72.4519,-58.5121,-47.5396,0,-58.5121,-42.5367,-54.5987,-81.5109,-70.5405,-23.016,-81.5109,-65.5356,-48.8847,-80.0058 0|0:50:0,0,15,1,18,9,4:0:0:0,15,1,18,9,4:0,522,7,396,266,54:-59.1148,-59.1148,-59.1148,-26.7123,-26.7123,-22.1969,-59.0193,-59.0193,-26.6178,-58.7183,-32.4133,-32.4133,0,-32.3203,-26.9947,-38.7489,-38.7489,-6.33114,-38.6539,-12.0422,-36.0397,-56.4701,-56.4701,-24.0697,-56.3752,-29.777,-36.1053,-55.266 0|0:72:0,0,21,4,21,6,11:0:0:0,21,4,21,6,11:0,746,28,423,172,263:-61.4696,-61.4696,-61.4696,-26.9434,-26.9434,-20.6218,-61.0815,-61.0815,-26.5581,-59.8774,-34.5312,-34.5312,0,-34.1473,-28.2095,-48.9883,-48.9883,-14.4573,-48.6006,-22.0472,-47.1822,-42.5142,-42.5142,-7.98115,-42.1272,-15.5735,-30.0307,-39.2028 dDocent_Contig_1707 32 . G A 7174.71 . AB=0.814815;ABP=142.467;AC=4;AF=0.666667;AN=6;AO=216;CIGAR=1X;DP=248;DPB=248;DPRA=0;EPP=472.048;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8596;QR=1185;RO=30;RPL=0;RPP=472.048;RPPR=68.1545;RPR=216;RUN=1;SAF=216;SAP=472.048;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:16,39:16:641:39:1561:-124.174,0,-41.4684 1/1:86:1,84:1:41:84:3334:-296.038,-21.8975,0 0/1:107:13,93:13:503:93:3701:-300.782,0,-13.2934 dDocent_Contig_1708 87 . T C 136.891 . AB=0.257143;ABP=20.9405;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=99;DPB=99;DPRA=1.09375;EPP=22.5536;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.966667;PAO=0;PQA=0;PQR=0;PRO=0;QA=286;QR=3065;RO=90;RPL=9;RPP=22.5536;RPPR=198.443;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:876:0:0:0,-7.82678,-79.1504 0/1:35:26,9:26:901:9:286:-15.513,0,-70.8705 0/0:38:38,0:38:1288:0:0:0,-11.4391,-116.219 dDocent_Contig_1709 16 . C T 118.859 . AB=0.357143;ABP=5.49198;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=38;DPB=38;DPRA=1.16667;EPP=13.8677;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=1250;RO=33;RPL=0;RPP=13.8677;RPPR=74.6689;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:489:0:0:0,-3.91339,-44.3534 0/0:11:11,0:11:422:0:0:0,-3.31133,-38.3333 0/1:14:9,5:9:339:5:195:-13.7098,0,-26.6495 dDocent_Contig_1710 55 . C T 240.893 . AB=0.282051;ABP=19.1015;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=56;DPB=56;DPRA=1.14706;EPP=26.8965;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=429;QR=1747;RO=45;RPL=11;RPP=26.8965;RPPR=100.727;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:644:0:0:0,-5.11751,-58.2874 0/1:17:12,5:12:470:5:193:-12.6224,0,-37.5337 0/1:22:16,6:16:633:6:236:-14.9898,0,-50.6855 dDocent_Contig_1711 83 . C T 56.9672 . AB=0.134328;ABP=80.8268;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1X;DP=182;DPB=182;DPRA=1.18519;EPP=35.5824;EPPR=365.646;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=500;QR=5458;RO=167;RPL=15;RPP=35.5824;RPPR=365.646;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=167;SRP=365.646;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:61:55,6:55:1803:6:196:0,-0.400788,-144.586 0/0:54:54,0:54:1764:0:0:0,-16.2556,-159.038 0/1:67:58,9:58:1891:9:304:-7.52006,0,-150.292 dDocent_Contig_1713 13 . T A 211.605 . AB=0.112033;ABP=318.09;AC=2;AF=0.333333;AN=6;AO=31;CIGAR=1X;DP=319;DPB=319;DPRA=0;EPP=70.3259;EPPR=628.394;GTI=0;LEN=1;MEANALT=1;MQM=58.7419;MQMR=44.5312;NS=3;NUMALT=1;ODDS=0;PAIRED=0.967742;PAIREDR=0.447917;PAO=0;PQA=0;PQR=0;PRO=0;QA=1249;QR=11549;RO=288;RPL=0;RPP=70.3259;RPPR=619.739;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=287;SRP=619.739;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:78:74,4:74:2949:4:160:0,-8.69742,-213.787 0/1:77:68,9:68:2706:9:358:-7.93824,0,-198.739 0/1:164:146,18:146:5894:18:731:-16.7451,0,-403.753 dDocent_Contig_1715 168 . G A 354.239 . AB=0.368421;ABP=8.7247;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=38;DPB=38;DPRA=0;EPP=33.4109;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=565;QR=951;RO=24;RPL=14;RPP=33.4109;RPPR=55.1256;RPR=0;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:7,11:7:284:11:443:-34.8072,0,-20.5155 0/1:12:10,2:10:387:2:81:-4.07337,0,-31.5657 0/1:8:7,1:7:280:1:41:-1.68633,0,-23.1617 dDocent_Contig_1716 76 . G T 406.41 . AB=0.168182;ABP=213.406;AC=3;AF=0.5;AN=6;AO=37;CIGAR=1X;DP=220;DPB=220;DPRA=0;EPP=83.3548;EPPR=366.406;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.783784;PAIREDR=0.781421;PAO=0;PQA=0;PQR=0;PRO=0;QA=1238;QR=6202;RO=183;RPL=37;RPP=83.3548;RPPR=400.39;RPR=0;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=179;SRP=366.406;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:89:79,10:79:2682:10:338:-3.95636,0,-214.838 0/1:63:51,12:51:1721:12:401:-17.4477,0,-136.211 0/1:68:53,15:53:1799:15:499:-24.7582,0,-141.723 dDocent_Contig_1718 30 . C T 161.918 . AB=0.269231;ABP=15.0369;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=57;DPB=57;DPRA=1.67742;EPP=18.2106;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=283;QR=2004;RO=50;RPL=0;RPP=18.2106;RPPR=111.584;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:681:0:0:0,-5.11751,-61.6217 0/0:14:14,0:14:558:0:0:0,-4.21442,-50.5601 0/1:26:19,7:19:765:7:283:-18.0157,0,-61.3434 dDocent_Contig_1719 98 . N T 424.597 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=16;CIGAR=1X;DP=16;DPB=16;DPRA=0;EPP=37.7539;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=462;QR=0;RO=0;RPL=16;RPP=37.7539;RPPR=0;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:10:0,10:0:0:10:271:-24.6561,-3.0103,0 1/1:6:0,6:0:0:6:191:-17.5025,-1.80618,0 ./.:.:.:.:.:.:.:. dDocent_Contig_1720 17 . G A 2366.63 . AB=0.612903;ABP=9.87495;AC=4;AF=0.666667;AN=6;AO=73;CIGAR=1X;DP=97;DPB=97;DPRA=0;EPP=161.528;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2866;QR=917;RO=24;RPL=0;RPP=161.528;RPPR=55.1256;RPR=73;RUN=1;SAF=73;SAP=161.528;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:10,24:10:375:24:951:-75.6567,0,-23.8579 0/1:28:14,14:14:542:14:537:-40.2382,0,-40.6882 1/1:35:0,35:0:0:35:1378:-124.291,-10.5361,0 dDocent_Contig_1721 59 . T C 131.709 . AB=0.125;ABP=130.041;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=150;DPB=150;DPRA=1.13043;EPP=31.2394;EPPR=300.502;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=525;QR=5381;RO=137;RPL=13;RPP=31.2394;RPPR=300.502;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=137;SRP=300.502;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:46,7:46:1775:7:283:-9.88899,0,-144.016 0/1:51:45,6:45:1770:6:242:-6.80479,0,-144.17 0/0:46:46,0:46:1836:0:0:0,-13.8474,-165.454 dDocent_Contig_1722 98 . N T 39.91 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=42;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:42:-3.98987,-0.60206,0 dDocent_Contig_1723 39 . C A 859.141 . AB=0.314815;ABP=35.1803;AC=3;AF=0.5;AN=6;AO=34;CIGAR=1X;DP=108;DPB=108;DPRA=0;EPP=76.8404;EPPR=161.528;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1366;QR=2927;RO=73;RPL=0;RPP=76.8404;RPPR=161.528;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:19,13:19:764:13:521:-37.6032,0,-59.4484 0/1:31:23,8:23:922:8:320:-19.8357,0,-73.9529 0/1:45:31,13:31:1241:13:525:-33.998,0,-98.3585 dDocent_Contig_1724 1 . N G 49.0099 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=44.5;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=52;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:52:-4.8999,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_1725 28 . G A 37.4223 . AB=0.133333;ABP=38.0434;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X2M1X;DP=77;DPB=77;DPRA=1.2766;EPP=11.6962;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=59;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=2678;RO=72;RPL=0;RPP=11.6962;RPPR=159.356;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:21:20,0:20:751:0:0:0,-6.0206,-67.8302 0|1:30:26,4:26:944:4:158:-5.56606,0,-76.2351 0|0:26:26,0:26:983:0:0:0,-7.82678,-88.7771 dDocent_Contig_1726 142 . A G 2093.63 . AB=0.480519;ABP=3.51792;AC=3;AF=0.5;AN=6;AO=74;CIGAR=1X;DP=154;DPB=154;DPRA=0;EPP=163.699;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2893;QR=3145;RO=80;RPL=0;RPP=163.699;RPPR=176.728;RPR=74;RUN=1;SAF=0;SAP=163.699;SAR=74;SRF=0;SRP=176.728;SRR=80;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:28,8:28:1098:8:314:-17.7841,0,-88.2706 0/1:58:38,20:38:1499:20:764:-51.6067,0,-117.693 0/1:60:14,46:14:548:46:1815:-145.495,0,-31.595 dDocent_Contig_1727 58 . T G 142.774 . AB=0.315789;ABP=8.61041;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=63;DPB=63;DPRA=1.075;EPP=18.2106;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=276;QR=2240;RO=56;RPL=7;RPP=18.2106;RPPR=124.613;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:13,6:13:523:6:235:-15.8003,0,-41.6965 0/0:24:23,1:23:915:1:41:0,-3.13015,-78.5644 0/0:20:20,0:20:802:0:0:0,-6.0206,-72.4955 dDocent_Contig_1728 68 . C T 108.765 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:39:-3.64612,-0.30103,0 1/1:2:0,2:0:0:2:78:-6.92763,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_1729 74 . T C 1227.49 . AB=0.485149;ABP=3.2038;AC=3;AF=0.5;AN=6;AO=49;CIGAR=1X;DP=101;DPB=101;DPRA=0;EPP=109.412;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1752;QR=1784;RO=52;RPL=49;RPP=109.412;RPPR=115.927;RPR=0;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:17,21:17:598:21:756:-56.927,0,-42.7078 0/1:27:15,12:15:488:12:431:-31.0017,0,-36.1004 0/1:36:20,16:20:698:16:565:-40.3434,0,-52.3055 dDocent_Contig_1730 1 . N G 153.911 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:78:-7.4033,-0.60206,0 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_1732 56 . C T 291.314 . AB=0.37931;ABP=6.67934;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=72;DPB=72;DPRA=0;EPP=31.2394;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=507;QR=2313;RO=59;RPL=13;RPP=31.2394;RPPR=131.127;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:20,1:20:767:1:36:0,-2.72335,-65.7485 0/0:22:21,1:21:825:1:34:0,-3.22375,-71.1636 0/1:29:18,11:18:721:11:437:-30.9553,0,-56.487 dDocent_Contig_1743 108 . G A 49.3016 . AB=0.142857;ABP=57.2971;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=119;DPB=119;DPRA=1.15278;EPP=20.3821;EPPR=244.044;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=267;QR=3674;RO=111;RPL=0;RPP=20.3821;RPPR=244.044;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=244.044;SRR=111;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:42,7:42:1362:7:232:-6.45303,0,-108.113 0/0:34:33,1:33:1091:1:35:0,-6.73639,-94.9899 0/0:36:36,0:36:1221:0:0:0,-10.8371,-110.192 dDocent_Contig_1744 9 . C T 356.699 . AB=0.261538;ABP=35.1147;AC=2;AF=0.333333;AN=6;AO=19;CIGAR=1X;DP=155;DPB=155;DPRA=0;EPP=44.2683;EPPR=298.331;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.992647;PAO=0;PQA=0;PQR=0;PRO=0;QA=723;QR=5213;RO=136;RPL=0;RPP=44.2683;RPPR=298.331;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=136;SRP=298.331;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:90:88,2:88:3369:2:78:0,-19.6892,-295.948 0/1:42:32,10:32:1229:10:385:-22.3634,0,-98.261 0/1:23:16,7:16:615:7:260:-16.8293,0,-48.7657 dDocent_Contig_1745 19 . T A 6406.57 . AB=0.424403;ABP=21.7241;AC=6;AF=1;AN=6;AO=160;CIGAR=1X3M;DP=377;DPB=377;DPRA=0;EPP=324.877;EPPR=98.5551;GTI=0;LEN=1;MEANALT=4.33333;MQM=59.7;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0.96875;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6369;QR=1744;RO=44;RPL=0;RPP=350.446;RPPR=98.5551;RPR=160;RUN=1;SAF=157;SAP=324.877;SAR=3;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:120:14,11,11,34,50:14:559:11,11,34,50:431,446,1352,2001:-225.71,-194.485,-237.214,-193.143,-203.745,-235.873,-118.791,-129.392,-128.051,-154.597,-65.0921,-75.694,-74.3519,0,-96.0817 1|1:120:13,23,6,22,55:13:514:23,6,22,55:915,218,834,2170:-207.588,-136.162,-171.539,-193.707,-160.668,-234.2,-143.773,-110.735,-168.278,-179.45,-33.0417,0,-57.5489,-7.61691,-58.7862 1|1:137:17,25,12,28,55:17:671:25,12,28,55:993,478,1124,2198:-212.883,-136.255,-183.937,-178.641,-152.104,-230.236,-125.824,-99.2863,-141.672,-172.603,-36.9697,-10.4318,-52.8178,0,-75.6204 dDocent_Contig_1746 14 . G A 46.5479 . AB=0.166667;ABP=26.1727;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=86;DPB=86;DPRA=0.774194;EPP=11.6962;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=145;QR=3211;RO=82;RPL=0;RPP=11.6962;RPPR=181.071;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:20,4:20:807:4:145:-6.17766,0,-65.7211 0/0:30:30,0:30:1139:0:0:0,-9.0309,-102.788 0/0:32:32,0:32:1265:0:0:0,-9.63296,-114.119 dDocent_Contig_1749 22 . A T 848.43 . AB=0.415584;ABP=7.77626;AC=2;AF=0.333333;AN=6;AO=32;CIGAR=1X;DP=94;DPB=94;DPRA=2.26471;EPP=72.4974;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=58.4688;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.96875;PAIREDR=0.983871;PAO=0;PQA=0;PQR=0;PRO=0;QA=1260;QR=2437;RO=62;RPL=0;RPP=72.4974;RPPR=137.642;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:10,25:10:396:25:981:-75.5278,0,-25.4623 0/0:17:17,0:17:678:0:0:0,-5.11751,-61.3514 0/1:42:35,7:35:1363:7:279:-12.8381,0,-110.295 dDocent_Contig_1750 32 . T A 220.309 . AB=0.454545;ABP=3.20771;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X2M1X3M1X3M;DP=38;DPB=38;DPRA=0;EPP=13.8677;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=183;QR=949;RO=24;RPL=0;RPP=13.8677;RPPR=55.1256;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:11:6,5,0,0:6:238:5,0,0:183,0,0:-13.5075,0,-18.4832,-15.3137,-19.9883,-34.9224,-15.3137,-19.9883,-34.9224,-34.9224 0|0:14:7,0,3,4:7:278:0,3,4:0,102,161:-11.1976,-13.3049,-36.2027,-5.05832,-27.9421,-27.039,0,-22.927,-14.6709,-21.7229 0|0:13:11,0,2,0:11:433:0,2,0:0,71,0:-2.82769,-6.13902,-41.7924,0,-36.0141,-35.412,-6.13902,-41.7924,-36.0141,-41.7924 dDocent_Contig_1753 1 . N G 113.73 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:122:-11.3725,-0.90309,0 dDocent_Contig_1756 208 . G A 233.883 . AB=0.170732;ABP=80.23;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=105;DPB=105;DPRA=0;EPP=35.5824;EPPR=196.271;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=605;QR=3323;RO=89;RPL=15;RPP=35.5824;RPPR=196.271;RPR=0;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=196.271;SRR=89;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:43,5:43:1644:5:199:-3.83892,0,-133.753 0/0:23:21,1:21:792:1:40:0,-3.03149,-67.5902 0/1:34:25,9:25:887:9:366:-23.0701,0,-69.8975 dDocent_Contig_1759 98 . N G 62.694 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=66;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:66:-6.26831,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_1760 8 . T C 135.732 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X2M1X1M1X;DP=46;DPB=46;DPRA=0.555556;EPP=13.8677;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=1593;RO=41;RPL=0;RPP=13.8677;RPPR=92.0407;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:10:5,5:5:194:5:197:-15.0961,0,-14.8214 0|0:9:9,0:9:355:0:0:0,-2.70927,-32.3129 0|0:27:27,0:27:1044:0:0:0,-8.12781,-94.264 dDocent_Contig_1761 28 . C T 87.3855 . AB=0.222222;ABP=27.1378;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X;DP=36;DPB=36;DPRA=0;EPP=20.3821;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1.33333;MQM=45.375;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.625;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=319;QR=1065;RO=27;RPL=0;RPP=20.3821;RPPR=61.6401;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:12,4:12:470:4:156:-7.54985,0,-37.5371 0/1:10:8,2:8:310:2:81:-4.67139,0,-25.2477 0/1:9:7,2:7:285:2:82:-1.46047,0,-23.3151 dDocent_Contig_1764 7 . C T 702.006 . AB=0.104762;ABP=145.48;AC=0;AF=0;AN=6;AO=11;CIGAR=1X4M2X1M1X1M;DP=105;DPB=105;DPRA=0;EPP=26.8965;EPPR=98.5551;GTI=0;LEN=1;MEANALT=5.33333;MQM=59.2727;MQMR=60;NS=3;NUMALT=7;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=416;QR=1721;RO=44;RPL=0;RPP=26.8965;RPPR=98.5551;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:39:15,0,3,4,3,0,4,8:15:582:0,3,4,3,0,4,8:0,18,155,81,0,163,326:-22.1201,-26.6355,-74.4786,-26.6148,-74.443,-73.5399,-13.8929,-61.7445,-61.7117,-60.5404,-21.0719,-68.9122,-68.8798,-56.1788,-68.0091,-26.6355,-74.4786,-74.443,-61.7445,-68.9122,-74.4786,-13.1711,-61.0244,-60.9914,-48.2888,-55.4585,-61.0244,-59.8203,0,-47.8693,-47.8396,-35.1317,-42.304,-47.8693,-34.411,-45.4611 0|0:33:11,2,1,4,0,2,0,13:11:431:2,1,4,0,2,0,13:18,6,150,0,76,0,516:-39.2321,-42.0446,-76.8921,-42.5376,-77.4851,-77.6905,-30.25,-65.2082,-65.7043,-64.5092,-42.5435,-77.4942,-77.9916,-65.7133,-78.002,-36.4914,-71.4453,-71.9421,-59.6629,-71.9518,-71.3498,-42.5435,-77.4942,-77.9916,-65.7133,-78.002,-71.9518,-78.002,0,-35.0145,-35.5064,-23.2147,-35.5111,-29.4578,-35.5111,-31.5977 0|0:33:18,0,1,3,5,0,0,6:18:708:0,1,3,5,0,0,6:0,6,111,192,0,0,240:-14.3713,-19.7898,-78.0469,-19.7926,-78.0371,-77.7361,-10.7092,-68.9692,-68.9606,-68.0661,-4.35525,-62.6201,-62.6124,-53.5427,-61.115,-19.7898,-78.0469,-78.0371,-68.9692,-62.6201,-78.0469,-19.7898,-78.0469,-78.0371,-68.9692,-62.6201,-78.0469,-78.0469,0,-58.2778,-58.2703,-49.1997,-42.85,-58.2778,-58.2778,-56.4716 dDocent_Contig_1765 21 . G C 4056.01 . AB=0.835526;ABP=151.642;AC=3;AF=0.5;AN=6;AO=127;CIGAR=1X;DP=152;DPB=152;DPRA=0;EPP=278.787;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5062;QR=980;RO=25;RPL=0;RPP=278.787;RPPR=57.2971;RPR=127;RUN=1;SAF=127;SAP=278.787;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:5,52:5:202:52:2042:-166.811,0,-1.40278 0/1:53:9,44:9:349:44:1777:-144.189,0,-15.8108 0/1:42:11,31:11:429:31:1243:-99.4924,0,-26.3194 dDocent_Contig_1766 188 . A T 61.5392 . AB=0.173913;ABP=24.253;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1M5I1M1X;DP=51;DPB=57.6667;DPRA=1.64286;EPP=11.6962;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=1761;RO=47;RPL=4;RPP=11.6962;RPPR=105.07;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=105.07;SRR=47;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:19,4:19:709:4:158:-7.67679,0,-57.1991 0|0:13:13,0:13:502:0:0:0,-3.91339,-45.5211 0|0:15:15,0:15:550:0:0:0,-4.51545,-49.8283 dDocent_Contig_1768 179 . G A 350.673 . AB=0.304348;ABP=18.305;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1X;DP=112;DPB=112;DPRA=1.74;EPP=35.5824;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=601;QR=3843;RO=97;RPL=15;RPP=35.5824;RPPR=213.643;RPR=0;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=213.643;SRR=97;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:40,1:40:1603:1:41:0,-8.24766,-140.41 0/0:25:25,0:25:984:0:0:0,-7.52575,-88.8602 0/1:46:32,14:32:1256:14:560:-36.8912,0,-99.4591 dDocent_Contig_1769 39 . A T 2002.99 . AB=0.633333;ABP=7.64277;AC=1;AF=0.166667;AN=6;AO=19;CIGAR=8M1X4M;DP=87;DPB=83.3846;DPRA=0;EPP=44.2683;EPPR=48.6112;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=749;QR=819;RO=21;RPL=0;RPP=44.2683;RPPR=48.6112;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:41:12,29,0:12:472:29,0:1138,0:-90.3664,0,-30.4891,-93.9788,-39.219,-132.805 0|0:16:9,7,0:9:347:7,0:239,0:-17.0174,0,-26.7729,-19.7267,-28.8801,-48.2464 0|1:30:0,11,19:0:0:11,19:442,749:-98.4377,-62.0121,-58.7008,-36.8241,0,-31.1045 dDocent_Contig_1770 58 . C A 209.74 . AB=0.23913;ABP=30.2009;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=68;DPB=68;DPRA=1.04545;EPP=26.8965;EPPR=102.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.877193;PAO=0;PQA=0;PQR=0;PRO=0;QA=411;QR=2098;RO=57;RPL=11;RPP=26.8965;RPPR=126.784;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=54;SRP=102.098;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:8,1:8:297:1:38:-1.088,0,-24.3739 0/1:37:27,10:27:995:10:373:-22.7805,0,-78.7155 0/0:22:22,0:22:806:0:0:0,-6.62266,-72.8649 dDocent_Contig_1771 50 . T C 78.166 . AB=0.108911;ABP=137.19;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=194;DPB=194;DPRA=2.17204;EPP=26.8965;EPPR=400.39;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=441;QR=7121;RO=183;RPL=11;RPP=26.8965;RPPR=400.39;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=183;SRP=400.39;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:52:52,0:52:1992:0:0:0,-15.6536,-179.483 0/0:41:41,0:41:1589:0:0:0,-12.3422,-143.247 0/1:101:90,11:90:3540:11:441:-9.6405,0,-288.259 dDocent_Contig_1773 12 . G A 87.9238 . 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AB=0.196262;ABP=88.753;AC=2;AF=0.333333;AN=6;AO=25;CIGAR=1X;DP=157;DPB=157;DPRA=0;EPP=57.2971;EPPR=289.645;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=942;QR=5172;RO=132;RPL=0;RPP=57.2971;RPPR=289.645;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=132;SRP=289.645;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:44,14:44:1724:14:526:-30.2127,0,-137.938 0/0:50:46,4:46:1795:4:142:0,-1.92523,-148.658 0/1:49:42,7:42:1653:7:274:-10.2766,0,-134.257 dDocent_Contig_1776 34 . A G 164.228 . 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AB=0.554545;ABP=8.69561;AC=3;AF=0.5;AN=6;AO=122;CIGAR=1X;DP=220;DPB=220;DPRA=0;EPP=267.93;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4599;QR=3901;RO=98;RPL=0;RPP=267.93;RPPR=215.815;RPR=122;RUN=1;SAF=122;SAP=267.93;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:24,33:24:945:33:1255:-96.0761,0,-68.1879 0/1:75:34,41:34:1344:41:1536:-115.914,0,-98.6444 0/1:88:40,48:40:1612:48:1808:-136.457,0,-118.82 dDocent_Contig_1783 10 . G C 4455.29 . AB=0.751323;ABP=106.701;AC=3;AF=0.5;AN=6;AO=142;CIGAR=1X;DP=189;DPB=189;DPRA=0;EPP=311.359;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.992958;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5637;QR=1857;RO=47;RPL=0;RPP=311.359;RPPR=105.07;RPR=142;RUN=1;SAF=142;SAP=311.359;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:17,45:17:664:45:1745:-138.605,0,-41.4299 0/1:79:17,62:17:672:62:2480:-199.566,0,-37.0299 0/1:48:13,35:13:521:35:1412:-112.88,0,-32.7871 dDocent_Contig_1784 12 . A G 189.419 . AB=0.188679;ABP=47.6279;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=151;DPB=151;DPRA=1.08163;EPP=24.725;EPPR=309.188;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=404;QR=5687;RO=141;RPL=0;RPP=24.725;RPPR=309.188;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=141;SRP=309.188;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:42,0:42:1703:0:0:0,-12.6433,-153.486 0/1:53:43,10:43:1724:10:404:-20.7658,0,-139.427 0/0:56:56,0:56:2260:0:0:0,-16.8577,-203.56 dDocent_Contig_1785 45 . G A 1906.39 . AB=0.437838;ABP=9.21954;AC=3;AF=0.5;AN=6;AO=81;CIGAR=1X;DP=185;DPB=185;DPRA=0;EPP=178.9;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2788;QR=3617;RO=104;RPL=0;RPP=178.9;RPPR=228.843;RPR=81;RUN=1;SAF=81;SAP=178.9;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:89:42,47:42:1469:47:1607:-118.121,0,-105.708 0/1:54:35,19:35:1260:19:662:-43.6451,0,-97.4456 0/1:42:27,15:27:888:15:519:-34.3956,0,-67.5793 dDocent_Contig_1787 24 . C A 3683.37 . AB=0.533613;ABP=5.346;AC=3;AF=0.5;AN=6;AO=127;CIGAR=2X;DP=238;DPB=238;DPRA=0;EPP=278.787;EPPR=237.529;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.976378;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4938;QR=4317;RO=108;RPL=0;RPP=278.787;RPPR=237.529;RPR=127;RUN=1;SAF=127;SAP=278.787;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:79:46,32:46:1822:32:1268:-90.7176,0,-140.525 0|1:61:29,32:29:1165:32:1251:-94.5034,0,-86.7682 0|1:98:33,63:33:1330:63:2419:-188.639,0,-90.7124 dDocent_Contig_1788 42 . G T 224.674 . AB=0.444444;ABP=3.49285;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=43;DPB=43;DPRA=1.44;EPP=20.3821;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=326;QR=1385;RO=35;RPL=0;RPP=20.3821;RPPR=79.0118;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:467:0:0:0,-3.61236,-42.3764 0/0:13:13,0:13:521:0:0:0,-3.91339,-47.2369 0/1:18:10,8:10:397:8:326:-24.2913,0,-30.6674 dDocent_Contig_1789 74 . A C 47.846 . AB=0.137255;ABP=61.2994;AC=3;AF=0.5;AN=6;AO=7;CIGAR=2X1M1X;DP=51;DPB=51;DPRA=0;EPP=18.2106;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=1432;RO=43;RPL=7;RPP=18.2106;RPPR=96.3836;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:11:8,3:8:266:3:103:-6.29864,0,-20.954 0|1:20:18,2:18:604:2:67:-0.342445,0,-48.6579 0|1:20:17,2:17:562:2:70:-0.597917,0,-44.8555 dDocent_Contig_1791 54 . G A 432.053 . AB=0.244186;ABP=51.8937;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X;DP=86;DPB=86;DPRA=0;EPP=48.6112;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.938462;PAO=0;PQA=0;PQR=0;PRO=0;QA=817;QR=2480;RO=65;RPL=21;RPP=48.6112;RPPR=144.156;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:19,9:19:687:9:351:-23.5208,0,-53.7095 0/1:36:29,7:29:1112:7:281:-14.8251,0,-89.5336 0/1:22:17,5:17:681:5:185:-10.3822,0,-54.9963 dDocent_Contig_1792 7 . C T 428.891 . AB=0.235955;ABP=56.9067;AC=2;AF=0.333333;AN=6;AO=22;CIGAR=1X;DP=139;DPB=139;DPRA=0;EPP=50.7827;EPPR=257.073;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.965812;PAO=0;PQA=0;PQR=0;PRO=0;QA=844;QR=4439;RO=117;RPL=0;RPP=50.7827;RPPR=257.073;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=117;SRP=257.073;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:50:49,1:49:1865:1:39:0,-11.1549,-164.203 0/1:39:35,4:35:1306:4:154:-2.49329,0,-106.089 0/1:50:33,17:33:1268:17:651:-43.8746,0,-99.3595 dDocent_Contig_1794 90 . T A 2481.78 . AB=0.55618;ABP=7.89001;AC=3;AF=0.5;AN=6;AO=99;CIGAR=1X;DP=178;DPB=178;DPRA=0;EPP=217.986;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3404;QR=2662;RO=79;RPL=99;RPP=217.986;RPPR=174.557;RPR=0;RUN=1;SAF=99;SAP=217.986;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:25,26:25:861:26:895:-65.5124,0,-62.4513 0/1:56:39,17:39:1306:17:593:-36.84,0,-100.969 0/1:71:15,56:15:495:56:1916:-151.349,0,-23.492 dDocent_Contig_1795 18 . G A 554.528 . AB=0.264368;ABP=44.9671;AC=1;AF=0.166667;AN=6;AO=37;CIGAR=1X;DP=311;DPB=311;DPRA=0;EPP=83.3548;EPPR=597.994;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1479;QR=10859;RO=274;RPL=0;RPP=83.3548;RPPR=597.994;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=274;SRP=597.994;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:104:96,8:96:3837:8:311:0,-2.95816,-316.987 0/1:87:64,23:64:2532:23:924:-57.2767,0,-201.828 0/0:120:114,6:114:4490:6:244:0,-13.7848,-381.692 dDocent_Contig_1796 27 . C A 36.6748 . AB=0.166667;ABP=20.3821;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=69;DPB=69;DPRA=0.705882;EPP=9.52472;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9394;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=2568;RO=66;RPL=0;RPP=9.52472;RPPR=146.327;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:795:0:0:0,-6.32163,-71.8584 0/1:18:15,3:15:586:3:117:-5.49129,0,-47.6519 0/0:30:30,0:30:1187:0:0:0,-9.0309,-107.11 dDocent_Contig_1797 7 . C A 2260.23 . AB=0.0338983;ABP=337.012;AC=0;AF=0;AN=6;AO=6;CIGAR=1X1M2X3M;DP=177;DPB=177;DPRA=0;EPP=16.0391;EPPR=172.385;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=226;QR=2937;RO=78;RPL=0;RPP=16.0391;RPPR=172.385;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:77:45,3,0,0,29:45:1693:3,0,0,29:111,0,0,1088:-75.5736,-80.0405,-217.854,-89.12,-218.757,-227.837,-89.12,-218.757,-227.837,-227.837,0,-129.642,-138.722,-138.722,-129.992 0|0:32:10,2,0,3,15:10:375:2,0,3,15:76,0,118,575:-43.648,-40.4208,-70.55,-46.6583,-71.1521,-77.3872,-46.2568,-70.7383,-76.9714,-76.0683,0,-24.5527,-30.7936,-30.405,-26.2781 0|0:68:23,1,4,1,38:23:869:1,4,1,38:39,160,40,1453:-112.324,-116.042,-186.974,-106.065,-174.093,-176.095,-119.107,-187.131,-177.155,-190.036,0,-68.0697,-58.0906,-71.1384,-59.8373 dDocent_Contig_1798 86 . A G 27176.5 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=812;CIGAR=1X;DP=843;DPB=843;DPRA=0;EPP=1766.25;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.987685;PAIREDR=0.966667;PAO=0;PQA=0;PQR=0;PRO=0;QA=31169;QR=951;RO=30;RPL=0;RPP=1766.25;RPPR=68.1545;RPR=812;RUN=1;SAF=0;SAP=1766.25;SAR=812;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:321:14,307:14:454:307:11758:-1016.44,-55.461,0 1/1:331:7,323:7:230:323:12311:-1086.34,-78.437,0 1/1:191:9,182:9:267:182:7100:-614.399,-33.1791,0 dDocent_Contig_1799 98 . N A 110.985 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:120:-11.0982,-1.20412,0 dDocent_Contig_1800 53 . C T 128.328 . AB=0.170213;ABP=47.41;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=164;DPB=164;DPRA=1.55;EPP=31.2394;EPPR=330.903;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=515;QR=6022;RO=151;RPL=13;RPP=31.2394;RPPR=330.903;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=151;SRP=330.903;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:77:72,5:72:2849:5:199:0,-4.89075,-238.234 0/0:40:40,0:40:1598:0:0:0,-12.0412,-144.06 0/1:47:39,8:39:1575:8:316:-14.6567,0,-127.835 dDocent_Contig_1802 7 . C T 100.44 . AB=0.170732;ABP=41.6201;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=102;DPB=102;DPRA=1.34426;EPP=18.2106;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=265;QR=3616;RO=95;RPL=0;RPP=18.2106;RPPR=209.3;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:32,0:32:1216:0:0:0,-9.63296,-109.737 0/0:29:29,0:29:1095:0:0:0,-8.72987,-98.8546 0/1:41:34,7:34:1305:7:265:-11.8679,0,-105.396 dDocent_Contig_1803 8 . T G 105.761 . AB=0.222222;ABP=33.1696;AC=2;AF=0.333334;AN=6;AO=11;CIGAR=3M1X;DP=70;DPB=68;DPRA=0;EPP=26.8965;EPPR=113.755;GTI=0;LEN=1;MEANALT=2.33333;MQM=32.1818;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.818182;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=415;QR=1939;RO=51;RPL=0;RPP=26.8965;RPPR=113.755;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:14,5,4:14:535:5,4:190,148:-2.38393,0,-42.586,-2.99424,-40.5219,-45.8377 0|0:25:22,1,1:22:829:1,1:38,39:0,-4.6261,-72.317,-3.39115,-69.4323,-71.1417 0|1:22:15,1,6:15:575:1,6:38,228:-11.6589,-14.1698,-61.0987,0,-45.3039,-45.505 dDocent_Contig_1804 8 . T C 246.913 . AB=0.254902;ABP=29.6215;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=51;DPB=51;DPRA=0;EPP=31.2394;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=494;QR=1463;RO=38;RPL=0;RPP=31.2394;RPPR=85.5263;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:19,3:19:732:3:115:-4.10223,0,-59.5887 0/1:14:10,4:10:386:4:150:-9.65095,0,-30.8826 0/1:15:9,6:9:345:6:229:-16.4599,0,-26.8927 dDocent_Contig_1805 16 . T C 183.87 . AB=0.333333;ABP=8.80089;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=93;DPB=93;DPRA=2.23529;EPP=22.5536;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=338;QR=3290;RO=84;RPL=0;RPP=22.5536;RPPR=185.414;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:52:51,1:51:1983:1:37:0,-11.9557,-174.979 0/0:17:17,0:17:670:0:0:0,-5.11751,-60.6299 0/1:24:16,8:16:637:8:301:-20.2109,0,-50.4359 dDocent_Contig_1806 52 . C A 117.684 . AB=0.150943;ABP=59.0998;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=156;DPB=156;DPRA=0;EPP=29.068;EPPR=313.531;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.944056;PAO=0;PQA=0;PQR=0;PRO=0;QA=483;QR=5704;RO=143;RPL=12;RPP=29.068;RPPR=313.531;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=143;SRP=313.531;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:54:52,2:52:2063:2:77:0,-8.94648,-178.553 0/0:49:47,2:47:1881:2:81:0,-7.06474,-161.812 0/1:53:44,8:44:1760:8:325:-13.5923,0,-142.593 dDocent_Contig_1807 98 . N G 43.7057 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=46;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:46:-4.36947,-0.60206,0 dDocent_Contig_1808 13 . C T 10292.7 . AB=0.0490628;ABP=3206.94;AC=0;AF=0;AN=6;AO=89;CIGAR=1X3M1X1M;DP=1814;DPB=1804.67;DPRA=0;EPP=196.271;EPPR=1484.26;GTI=0;LEN=1;MEANALT=16;MQM=60;MQMR=59.9416;NS=3;NUMALT=6;ODDS=0;PAIRED=1;PAIREDR=0.977208;PAO=0;PQA=0;PQR=0;PRO=0;QA=3362;QR=26935;RO=702;RPL=0;RPP=196.271;RPPR=1527.38;RPR=89;RUN=1;SAF=89;SAP=196.271;SAR=0;SRF=697;SRP=1484.26;SRR=5;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:659:225,31,97,23,17,22,166:225:8624:31,97,23,17,22,166:1232,3800,870,640,844,6507:-467.337,-433.638,-1132.05,-223.747,-830.056,-902.287,-463.75,-1070.06,-860.168,-1164.57,-482.633,-1088.94,-879.051,-1119.05,-1185.25,-467.01,-1073.32,-863.428,-1103.43,-1122.31,-1168.13,0,-606.31,-396.418,-636.422,-655.305,-639.682,-657.77 0|0:459:182,18,57,14,25,26,94:182:6939:18,57,14,25,26,94:698,2188,533,938,1014,3708:-250.3,-247.743,-811.525,-126.384,-638.241,-678.427,-261.367,-773.224,-651.866,-826.354,-228.259,-740.115,-618.757,-753.74,-789.934,-222.556,-734.413,-613.055,-748.038,-714.929,-783.931,0,-511.861,-390.502,-525.485,-492.376,-486.674,-540.908 0|0:696:295,45,61,52,12,37,125:295:11372:45,61,52,12,37,125:1784,2421,1959,470,1449,4935:-317.154,-259.114,-1179.33,-207.132,-994.05,-1122.53,-245.44,-1032.36,-980.376,-1163.55,-367.313,-1154.23,-1102.25,-1140.56,-1297.46,-287.858,-1074.78,-1022.79,-1061.1,-1182.97,-1210.48,0,-786.918,-734.937,-773.244,-895.117,-815.662,-896.134 dDocent_Contig_1809 33 . C T 49.4622 . AB=0.173913;ABP=24.253;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=39;DPB=39;DPRA=0.71875;EPP=11.6962;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.8;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=1399;RO=35;RPL=0;RPP=11.6962;RPPR=79.0118;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:6,1:6:241:1:41:-1.98736,0,-19.9595 0/0:16:16,0:16:642:0:0:0,-4.81648,-58.1147 0/1:16:13,3:13:516:3:123:-6.64831,0,-41.9686 dDocent_Contig_1811 94 . A T 57.0248 . AB=0.222222;ABP=15.074;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=54;DPB=54;DPRA=1;EPP=11.6962;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=1698;RO=50;RPL=4;RPP=11.6962;RPPR=111.584;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:699:0:0:0,-6.32163,-63.2199 0/0:15:15,0:15:520:0:0:0,-4.51545,-47.1292 0/1:18:14,4:14:479:4:140:-7.52639,0,-38.0176 dDocent_Contig_1812 184 . C A 38.8519 . AB=0.121951;ABP=53.9075;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=76;DPB=76;DPRA=0;EPP=16.0391;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=2576;RO=70;RPL=6;RPP=16.0391;RPPR=155.013;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=155.013;SRR=70;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:15,3:15:541:3:116:-5.39774,0,-43.5867 0/1:23:21,2:21:728:2:82:-0.855988,0,-58.88 0/0:35:34,1:34:1307:1:41:0,-6.44148,-113.794 dDocent_Contig_1815 7 . C G 358.534 . AB=0.268657;ABP=34.1563;AC=2;AF=0.333333;AN=6;AO=21;CIGAR=1X;DP=145;DPB=145;DPRA=0;EPP=48.6112;EPPR=270.101;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=765;QR=4617;RO=123;RPL=0;RPP=48.6112;RPPR=270.101;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:32,9:32:1214:9:339:-18.5223,0,-97.2153 0/0:78:74,3:74:2756:3:111:0,-13.2101,-237.876 0/1:26:17,9:17:647:9:315:-20.854,0,-50.7378 dDocent_Contig_1816 61 . T A 140.409 . AB=0.3;ABP=9.95901;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=92;DPB=92;DPRA=0.555556;EPP=16.0391;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=3358;RO=86;RPL=6;RPP=16.0391;RPPR=189.757;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:1028:0:0:0,-7.82678,-92.815 0/0:46:46,0:46:1764:0:0:0,-13.8474,-158.992 0/1:20:14,6:14:566:6:239:-15.8648,0,-45.262 dDocent_Contig_1817 107 . N A 127.748 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=133;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:37:-3.51494,-0.60206,0 1/1:3:0,3:0:0:3:96:-8.95796,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_1819 107 . N A 125.533 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=129;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:60:-5.69857,-0.60206,0 dDocent_Contig_1820 146 . T C 66.1294 . AB=0.16129;ABP=33.9012;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=73;DPB=73;DPRA=0.758621;EPP=16.0391;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=229;QR=2461;RO=67;RPL=0;RPP=16.0391;RPPR=148.499;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=148.499;SRR=67;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:26,5:26:969:5:190:-8.13443,0,-78.1857 0/0:29:29,0:29:1041:0:0:0,-8.72987,-93.9867 0/0:13:12,1:12:451:1:39:0,-0.0168255,-37.0385 dDocent_Contig_1821 93 . G A 2286.2 . AB=0.592857;ABP=13.4954;AC=4;AF=0.666667;AN=6;AO=83;CIGAR=1X3M;DP=140;DPB=140;DPRA=0;EPP=183.243;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2793;QR=1383;RO=42;RPL=83;RPP=183.243;RPPR=94.2121;RPR=0;RUN=1;SAF=83;SAP=183.243;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:45:19,0,26:19:635:0,26:0,834:-61.8108,-67.5304,-118.949,0,-51.7469,-43.9201 1|1:48:9,15,24:9:275:15,24:515,828:-84.383,-45.2745,-62.7815,-19.823,0,-34.6174 0|1:47:14,0,33:14:473:0,33:0,1131:-87.9486,-92.163,-130.504,0,-38.6798,-28.7459 dDocent_Contig_1822 8 . G T 1644.68 . AB=0.183333;ABP=159.791;AC=0;AF=0;AN=6;AO=33;CIGAR=2X2M;DP=180;DPB=180;DPRA=0;EPP=74.6689;EPPR=122.441;GTI=0;LEN=1;MEANALT=5;MQM=59.697;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0.969697;PAIREDR=0.854545;PAO=0;PQA=0;PQR=0;PRO=0;QA=1256;QR=2085;RO=55;RPL=0;RPP=74.6689;RPPR=122.441;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:65:20,5,8,24,8:20:753:5,8,24,8:188,305,908,292:-68.4163,-59.0338,-119.229,-49.4365,-95.7344,-108.729,0,-46.2986,-36.7011,-54.4771,-50.5853,-96.8821,-87.2852,-37.8502,-109.877 0|0:42:12,3,9,14,3:12:453:3,9,14,3:110,342,518,109:-38.7608,-33.3824,-69.61,-14.3219,-42.4634,-48.745,0,-28.1405,-9.08072,-32.9164,-33.473,-61.6129,-42.554,-28.2311,-69.7005 0|0:73:23,2,16,22,6:23:879:2,16,22,6:78,609,849,156:-62.814,-63.325,-134.852,-19.7807,-85.5005,-87.0965,0,-65.7241,-22.1794,-65.5141,-57.5229,-123.235,-79.6964,-59.9215,-127.841 dDocent_Contig_1823 13 . T C 475.263 . AB=0.165714;ABP=172.869;AC=2;AF=0.333333;AN=6;AO=36;CIGAR=1X;DP=263;DPB=263;DPRA=0;EPP=81.1833;EPPR=495.935;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=0.977974;PAO=0;PQA=0;PQR=0;PRO=0;QA=1429;QR=8987;RO=227;RPL=0;RPP=81.1833;RPPR=495.935;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=227;SRP=495.935;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:86:71,15:71:2828:15:595:-27.9995,0,-228.739 0/1:89:75,14:75:2947:14:550:-23.0494,0,-238.544 0/0:88:81,7:81:3212:7:284:0,-0.556645,-263.217 dDocent_Contig_1824 7 . C A 2022.91 . AB=0.517483;ABP=3.38993;AC=3;AF=0.5;AN=6;AO=74;CIGAR=1X;DP=143;DPB=143;DPRA=0;EPP=163.699;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2777;QR=2633;RO=69;RPL=0;RPP=163.699;RPPR=152.842;RPR=74;RUN=1;SAF=74;SAP=163.699;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:19,23:19:725:23:853:-64.4377,0,-52.9361 0/1:45:31,14:31:1189:14:516:-33.232,0,-93.7616 0/1:56:19,37:19:719:37:1408:-110.144,0,-48.1778 dDocent_Contig_1825 98 . N T 132.249 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=136;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:101:-9.42383,-0.90309,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_1826 9 . T A 23706.9 . AB=0.721612;ABP=468.835;AC=3;AF=0.5;AN=6;AO=788;CIGAR=1X;DP=1092;DPB=1092;DPRA=0;EPP=1714.13;EPPR=660.966;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=59.198;NS=3;NUMALT=1;ODDS=0;PAIRED=0.996193;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=30066;QR=11359;RO=303;RPL=0;RPP=1714.13;RPPR=660.966;RPR=788;RUN=1;SAF=788;SAP=1714.13;SAR=0;SRF=303;SRP=660.966;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:344:105,239:105:3895:239:9071:-712.576,0,-246.998 0/1:347:82,265:82:3053:265:10070:-801.506,0,-170.411 0/1:401:116,284:116:4411:284:10925:-862.127,0,-276.255 dDocent_Contig_1827 22 . T A 1789.69 . AB=0.53913;ABP=4.53977;AC=3;AF=0.5;AN=6;AO=62;CIGAR=1X;DP=115;DPB=115;DPRA=0;EPP=137.642;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2424;QR=2066;RO=53;RPL=0;RPP=137.642;RPPR=118.098;RPR=62;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:19,16:19:745:16:627:-46.2244,0,-56.8382 0/1:40:17,23:17:649:23:900:-69.2704,0,-46.7025 0/1:40:17,23:17:672:23:897:-68.9967,0,-48.77 dDocent_Contig_1828 50 . T C 2360.76 . AB=0.669421;ABP=33.1776;AC=3;AF=0.5;AN=6;AO=81;CIGAR=1X;DP=121;DPB=121;DPRA=0;EPP=178.9;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3079;QR=1509;RO=40;RPL=81;RPP=178.9;RPPR=89.8692;RPR=0;RUN=1;SAF=81;SAP=178.9;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:22,15:22:829:15:572:-40.6821,0,-63.7893 0/1:41:11,30:11:423:30:1146:-91.0936,0,-26.081 0/1:43:7,36:7:257:36:1361:-109.823,0,-10.5365 dDocent_Contig_1829 7 . C T 248.303 . AB=0.216667;ABP=44.8473;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=147;DPB=147;DPRA=1.06383;EPP=33.4109;EPPR=291.816;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=532;QR=5056;RO=133;RPL=0;RPP=33.4109;RPPR=291.816;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=133;SRP=291.816;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:47:47,0:47:1802:0:0:0,-14.1484,-162.432 0/1:60:47,13:47:1775:13:493:-26.6542,0,-141.944 0/0:40:39,1:39:1479:1:39:0,-8.14463,-129.487 dDocent_Contig_1830 24 . G C 100.805 . AB=0.12;ABP=34.3664;AC=0;AF=0;AN=6;AO=3;CIGAR=7M1X5M2D7M4D6M;DP=59;DPB=57.125;DPRA=0;EPP=9.52472;EPPR=87.6977;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=58;QR=1460;RO=39;RPL=0;RPP=9.52472;RPPR=87.6977;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:18:12,0,2,0,2,0:12:454:0,2,0,2,0:0,80,0,81,0:-3.10089,-6.71325,-43.96,-0.0914715,-37.3654,-36.7633,-6.71325,-43.96,-37.3654,-43.96,0,-37.2758,-30.6798,-37.2758,-36.6737,-6.71325,-43.96,-37.3654,-43.96,-37.2758,-43.96 0|0:25:16,3,0,3,0,0:16:592:3,0,3,0,0:58,0,111,0,0:-4.30954,-4.85273,-52.4143,-9.12602,-53.3174,-57.6143,0,-44.2344,-48.5289,-47.6258,-9.12602,-53.3174,-57.6143,-48.5289,-57.6143,-9.12602,-53.3174,-57.6143,-48.5289,-57.6143,-57.6143 0|0:16:11,0,0,0,0,4:11:414:0,0,0,0,4:0,0,0,0,140:-8.07962,-11.3909,-45.3326,-11.3909,-45.3326,-45.3326,-11.3909,-45.3326,-45.3326,-45.3326,-11.3909,-45.3326,-45.3326,-45.3326,-45.3326,0,-33.9477,-33.9477,-33.9477,-33.9477,-32.7436 dDocent_Contig_1831 98 . N T 264.607 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=12;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=29.068;EPPR=0;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=283;QR=0;RO=0;RPL=12;RPP=29.068;RPPR=0;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:17:-1.61499,-0.60206,0 1/1:6:0,6:0:0:6:141:-12.9229,-1.80618,0 1/1:5:0,4:0:0:4:125:-11.4417,-1.20412,0 dDocent_Contig_1832 41 . C A 41.3821 . AB=0.137931;ABP=36.0317;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=116;DPB=116;DPRA=0.666667;EPP=11.6962;EPPR=229.154;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=4416;RO=112;RPL=0;RPP=11.6962;RPPR=229.154;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:50:50,0:50:1969:0:0:0,-15.0515,-177.401 0/0:37:37,0:37:1475:0:0:0,-11.1381,-132.998 0/1:29:25,4:25:972:4:159:-5.96208,0,-79.0439 dDocent_Contig_1834 97 . A G 218.261 . AB=0.3;ABP=16.9077;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=74;DPB=74;DPRA=0;EPP=31.2394;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=442;QR=1937;RO=61;RPL=13;RPP=31.2394;RPPR=135.47;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:33,1:33:1019:1:34:0,-6.83611,-88.593 0/1:9:7,2:7:229:2:68:-3.74866,0,-18.2213 0/1:31:21,10:21:689:10:340:-21.5977,0,-52.9873 dDocent_Contig_1835 77 . G T 36.2868 . AB=0.0833333;ABP=111.584;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=2X;DP=122;DPB=122;DPRA=0;EPP=18.2106;EPPR=246.215;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=4217;RO=112;RPL=7;RPP=18.2106;RPPR=246.215;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:49:44,5,0:44:1659:5,0:201,0:-3.72042,0,-134.822,-16.9657,-136.327,-152.894 0|0:50:49,1,0:49:1845:1,0:40,0:0,-11.0558,-162.308,-14.7505,-162.609,-165.905 0|0:23:19,1,3:19:713:1,3:41,112:-3.42288,-5.74928,-63.8567,0,-54.9882,-57.4709 dDocent_Contig_1837 64 . A T 2752.71 . AB=0.722973;ABP=66.922;AC=3;AF=0.5;AN=6;AO=107;CIGAR=1X;DP=148;DPB=148;DPRA=0;EPP=235.358;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3605;QR=1404;RO=41;RPL=107;RPP=235.358;RPPR=92.0407;RPR=0;RUN=1;SAF=107;SAP=235.358;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:17,35:17:582:35:1173:-90.2157,0,-37.0496 0/1:36:16,20:16:545:20:671:-49.8684,0,-38.5366 0/1:60:8,52:8:277:52:1761:-140.71,0,-7.20521 dDocent_Contig_1838 22 . T C 50039.1 . AB=0.694312;ABP=758.288;AC=3;AF=0.5;AN=6;AO=1599;CIGAR=1X3M;DP=2303;DPB=2303;DPRA=0;EPP=3475.19;EPPR=952.041;GTI=0;LEN=1;MEANALT=7;MQM=59.5322;MQMR=53.4291;NS=3;NUMALT=2;ODDS=2.22045e-16;PAIRED=0.873046;PAIREDR=0.809701;PAO=0;PQA=0;PQR=0;PRO=0;QA=62914;QR=20895;RO=536;RPL=0;RPP=3475.19;RPPR=1166.92;RPR=1599;RUN=1;SAF=1599;SAP=3475.19;SAR=0;SRF=510;SRP=952.041;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:913:202,45,650:202:7884:45,650:1756,25377:-2023.62,-1940.35,-2523.73,0,-452.829,-401.243 0|1:760:186,54,501:186:7212:54,501:2087,19760:-1568.73,-1453.32,-1971.71,0,-363.223,-383.814 0|1:630:148,29,448:148:5799:29,448:1126,17777:-1417.08,-1369.13,-1828.64,0,-375.742,-333.383 dDocent_Contig_1840 18 . G T 4382.89 . AB=0.204607;ABP=562.344;AC=1;AF=0.166667;AN=6;AO=151;CIGAR=3X;DP=738;DPB=738;DPRA=0;EPP=330.903;EPPR=782.569;GTI=0;LEN=1;MEANALT=4.33333;MQM=58.6887;MQMR=60;NS=3;NUMALT=3;ODDS=1.11022e-16;PAIRED=0.940397;PAIREDR=0.910864;PAO=0;PQA=0;PQR=0;PRO=0;QA=5938;QR=13454;RO=359;RPL=0;RPP=330.903;RPPR=782.569;RPR=151;RUN=1;SAF=151;SAP=330.903;SAR=0;SRF=359;SRP=782.569;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:255:124,67,22,35:124:4648:67,22,35:2637,871,1319:-173.219,0,-360.515,-140.178,-310.315,-514.237,-108.239,-278.372,-418.548,-478.379 0|0:219:107,38,18,50:107:3986:38,18,50:1474,701,1905:-121.639,-32.7514,-347.578,-97.1705,-302.338,-418.016,0,-205.162,-269.581,-311.208 0|0:264:128,46,23,59:128:4820:46,23,59:1827,891,2284:-148.954,-37.0768,-418.143,-114.613,-359.116,-502.601,0,-244.5,-322.036,-377.149 dDocent_Contig_1842 52 . A G 146.969 . AB=0.185185;ABP=49.4959;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=70;DPB=70;DPRA=1.6875;EPP=24.725;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=375;QR=2320;RO=60;RPL=10;RPP=24.725;RPPR=133.299;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:608:0:0:0,-4.81648,-55.0552 0/1:40:33,7:33:1278:7:261:-11.8033,0,-103.263 0/1:14:11,3:11:434:3:114:-6.4165,0,-35.2003 dDocent_Contig_1844 49 . C A 70.1683 . AB=0.1875;ABP=16.582;AC=2;AF=0.333334;AN=6;AO=3;CIGAR=1X3M;DP=35;DPB=35;DPRA=1.77778;EPP=9.52472;EPPR=63.8115;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=1098;RO=28;RPL=3;RPP=9.52472;RPPR=63.8115;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:10:8,2,0:8:309:2,0:77,0:-4.29853,0,-25.1595,-6.70677,-25.7615,-32.0834 0|1:16:11,2,3:11:433:2,3:69,116:-6.24042,-3.96259,-38.9871,0,-30.0638,-34.759 0|0:9:9,0,0:9:356:0,0:0,0:0,-2.70927,-32.4017,-2.70927,-32.4017,-32.4017 dDocent_Contig_1845 62 . G A 64.4599 . AB=0.272727;ABP=7.94546;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=39;DPB=39;DPRA=0.785714;EPP=9.52472;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1417;RO=36;RPL=3;RPP=9.52472;RPPR=81.1833;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:8,3:8:312:3:121:-7.96887,0,-25.1276 0/0:18:18,0:18:715:0:0:0,-5.41854,-64.6726 0/0:10:10,0:10:390:0:0:0,-3.0103,-35.4544 dDocent_Contig_1846 73 . T G 2174.55 . AB=0.0784314;ABP=81.7368;AC=0;AF=0;AN=6;AO=4;CIGAR=6M1X5M;DP=186;DPB=179.417;DPRA=0;EPP=11.6962;EPPR=198.443;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=146;QR=3208;RO=90;RPL=4;RPP=11.6962;RPPR=198.443;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:43:12,26,5,0:12:423:26,5,0:951,185,0:-74.0888,0,-26.6004,-62.5659,-19.2875,-95.4961,-77.7011,-34.4272,-97.0013,-112.137 0|0:51:30,15,1,4:30:1077:15,1,4:556,38,146:-36.4995,0,-83.3708,-42.4126,-84.769,-129.966,-33.6005,-75.9571,-118.338,-120.251 0|0:92:48,42,0,0:48:1708:42,0,0:1549,0,0:-112.39,0,-126.708,-126.84,-139.351,-266.034,-126.84,-139.351,-266.034,-266.034 dDocent_Contig_1847 132 . T A 98.8411 . AB=0.444444;ABP=3.25157;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=51;DPB=51;DPRA=0.428571;EPP=11.6962;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=1749;RO=47;RPL=0;RPP=11.6962;RPPR=105.07;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=105.07;SRR=47;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1234:0:0:0,-9.93399,-111.353 0/1:9:5,4:5:188:4:156:-11.708,0,-14.5746 0/0:9:9,0:9:327:0:0:0,-2.70927,-29.7742 dDocent_Contig_1849 59 . T G 932.252 . AB=0.321918;ABP=43.2272;AC=3;AF=0.5;AN=6;AO=47;CIGAR=1X;DP=146;DPB=146;DPRA=0;EPP=105.07;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.723404;PAIREDR=0.959596;PAO=0;PQA=0;PQR=0;PRO=0;QA=1575;QR=3243;RO=99;RPL=26;RPP=4.16534;RPPR=3.03223;RPR=21;RUN=1;SAF=26;SAP=4.16534;SAR=21;SRF=49;SRP=3.03223;SRR=50;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:70:45,25:45:1499:25:846:-55.3737,0,-114.124 0/1:43:35,8:35:1160:8:267:-11.4115,0,-91.7499 0/1:33:19,14:19:584:14:462:-31.9628,0,-42.9187 dDocent_Contig_1850 1 . N G 181.058 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=8.07091;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:5:0,5:0:0:5:197:-18.1057,-1.50515,0 dDocent_Contig_1851 59 . A G 175.869 . AB=0.28125;ABP=16.3106;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=93;DPB=93;DPRA=1.04918;EPP=22.5536;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=319;QR=3183;RO=84;RPL=9;RPP=22.5536;RPPR=185.414;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:44:44,0:44:1699:0:0:0,-13.2453,-153.157 0/0:17:17,0:17:633:0:0:0,-5.11751,-57.2978 0/1:32:23,9:23:851:9:319:-19.4108,0,-67.2714 dDocent_Contig_1852 74 . A G 1921.77 . AB=0.505263;ABP=3.03316;AC=4;AF=0.666667;AN=6;AO=77;CIGAR=1X;DP=127;DPB=127;DPRA=0;EPP=170.214;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2568;QR=1649;RO=50;RPL=77;RPP=170.214;RPPR=111.584;RPR=0;RUN=1;SAF=77;SAP=170.214;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:12,19:12:401:19:631:-47.771,0,-27.0811 1/1:32:3,29:3:83:29:951:-78.145,-1.88767,0 0/1:64:35,29:35:1165:29:986:-69.7835,0,-85.8848 dDocent_Contig_1853 47 . G C 188.828 . AB=0.210526;ABP=44.4969;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=81;DPB=81;DPRA=1.1875;EPP=29.068;EPPR=150.67;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.916667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=431;QR=2695;RO=68;RPL=0;RPP=29.068;RPPR=150.67;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:16,8:16:637:8:283:-18.5732,0,-50.4411 0/1:33:28,4:28:1084:4:148:-3.83037,0,-88.0248 0/0:24:24,0:24:974:0:0:0,-7.22472,-87.9578 dDocent_Contig_1856 25 . G A 1981.05 . AB=0.329167;ABP=63.8477;AC=3;AF=0.5;AN=6;AO=79;CIGAR=1X2M;DP=240;DPB=240;DPRA=0;EPP=174.557;EPPR=337.417;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.993506;PAO=0;PQA=0;PQR=0;PRO=0;QA=3041;QR=5975;RO=154;RPL=0;RPP=174.557;RPPR=337.417;RPR=79;RUN=1;SAF=79;SAP=174.557;SAR=0;SRF=154;SRP=337.417;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:81:57,0,23:57:2193:0,23:0,906:-57.3643,-74.523,-254.542,0,-180.011,-173.087 0|1:83:43,0,40:43:1663:0,40:0,1543:-114.129,-127.074,-263.661,0,-136.973,-124.932 0|1:76:54,5,16:54:2119:5,16:199,592:-32.1344,-31.9983,-204.769,0,-157.868,-169.437 dDocent_Contig_1858 107 . N G 64.5896 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:68:-6.45788,-0.60206,0 dDocent_Contig_1859 109 . C T 402.245 . AB=0.193333;ABP=125.539;AC=3;AF=0.5;AN=6;AO=29;CIGAR=1X;DP=150;DPB=150;DPRA=0;EPP=65.983;EPPR=265.758;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=999;QR=4086;RO=121;RPL=0;RPP=65.983;RPPR=265.758;RPR=29;RUN=1;SAF=0;SAP=65.983;SAR=29;SRF=0;SRP=265.758;SRR=121;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:43,7:43:1425:7:228:-5.78798,0,-113.483 0/1:50:40,10:40:1349:10:349:-16.695,0,-106.65 0/1:50:38,12:38:1312:12:422:-23.2643,0,-103.326 dDocent_Contig_1860 8 . A G 2567.67 . AB=0.491935;ABP=3.08035;AC=3;AF=0.5;AN=6;AO=61;CIGAR=1X3M1X;DP=124;DPB=124;DPRA=0;EPP=135.47;EPPR=55.1256;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2320;QR=919;RO=24;RPL=0;RPP=135.47;RPPR=55.1256;RPR=61;RUN=1;SAF=61;SAP=135.47;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:39:10,20,9:10:381:20,9:758,350:-59.1264,0,-25.2274,-33.3759,-2.4866,-61.9194 0|1:31:11,17,3:11:425:17,3:635,119:-48.7218,0,-29.8377,-44.1977,-27.1256,-78.206 1|0:54:3,24,27:3:113:24,27:927,1098:-154.442,-79.2164,-81.2485,-66.8844,0,-68.0145 dDocent_Contig_1861 129 . C T 157.126 . AB=0.275862;ABP=15.6647;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=55;DPB=55;DPRA=2.23077;EPP=20.3821;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=288;QR=1684;RO=47;RPL=0;RPP=20.3821;RPPR=105.07;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=105.07;SRR=47;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:495:0:0:0,-4.21442,-44.8801 0/1:29:21,8:21:756:8:288:-17.5365,0,-59.6353 0/0:12:12,0:12:433:0:0:0,-3.61236,-39.31 dDocent_Contig_1862 16 . T C 1103.12 . AB=0.535211;ABP=3.7749;AC=3;AF=0.5;AN=6;AO=38;CIGAR=1X;DP=71;DPB=71;DPRA=0;EPP=85.5263;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1513;QR=1304;RO=33;RPL=0;RPP=85.5263;RPPR=74.6689;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:6,12:6:232:12:467:-36.9569,0,-15.8282 0/1:23:11,12:11:439:12:486:-37.1682,0,-32.942 0/1:30:16,14:16:633:14:560:-41.7099,0,-48.2714 dDocent_Contig_1863 54 . G T 1725.56 . AB=0.361111;ABP=33.1696;AC=3;AF=0.5;AN=6;AO=65;CIGAR=1X2M1X2M;DP=180;DPB=180;DPRA=0;EPP=144.156;EPPR=222.329;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2536;QR=3632;RO=101;RPL=65;RPP=144.156;RPPR=222.329;RPR=0;RUN=1;SAF=65;SAP=144.156;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:70:60,9,1:60:2155:9,1:349,40:-10.601,0,-173.026,-25.3665,-172.44,-200.816 0|1:57:22,29,6:22:809:29,6:1126,227:-85.9067,0,-57.4024,-73.9224,-47.5214,-138.248 0|1:53:19,27,7:19:668:27,7:1061,256:-81.5709,0,-46.2315,-66.3766,-33.4361,-118.622 dDocent_Contig_1867 32 . A G 156.589 . AB=0.105263;ABP=28.7251;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X1M1X;DP=34;DPB=34;DPRA=0;EPP=7.35324;EPPR=50.7827;GTI=0;LEN=1;MEANALT=3;MQM=9;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=856;RO=22;RPL=0;RPP=7.35324;RPPR=50.7827;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:19:9,2,2,6:9:356:2,2,6:68,69,239:-17.1147,-16.3658,-45.1014,-18.861,-44.7235,-47.5785,0,-26.0027,-28.4886,-27.6562 0|0:8:7,0,0,1:7:266:0,0,1:0,0,41:-1.68633,-3.79354,-25.5821,-3.79354,-25.5821,-25.5821,0,-22.1943,-22.1943,-21.8933 0|1:7:6,1,0,0:6:234:1,0,0:35,0,0:-0.166347,0,-19.3225,-1.97253,-19.6236,-21.3456,-1.97253,-19.6236,-21.3456,-21.3456 dDocent_Contig_1869 125 . A G 37.1362 . AB=0.1875;ABP=16.582;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=38;DPB=38;DPRA=1.45455;EPP=9.52472;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=111;QR=1282;RO=35;RPL=0;RPP=9.52472;RPPR=79.0118;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=79.0118;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:370:0:0:0,-3.0103,-33.6502 0/0:12:12,0:12:431:0:0:0,-3.61236,-39.1297 0/1:16:13,3:13:481:3:111:-5.53744,0,-38.8179 dDocent_Contig_1870 8 . G A 155.405 . AB=0.228571;ABP=25.4075;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=183;DPB=183;DPRA=0.472973;EPP=20.3821;EPPR=383.018;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.977143;PAO=0;PQA=0;PQR=0;PRO=0;QA=306;QR=6680;RO=175;RPL=0;RPP=20.3821;RPPR=383.018;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=175;SRP=383.018;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:44:44,0:44:1667:0:0:0,-13.2453,-150.292 0/1:35:27,8:27:1009:8:306:-17.3644,0,-80.5839 0/0:104:104,0:104:4004:0:0:0,-31.3071,-360.45 dDocent_Contig_1871 8 . G A 70.1947 . AB=0.15;ABP=45.5712;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=104;DPB=104;DPRA=0;EPP=20.3821;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.989583;PAO=0;PQA=0;PQR=0;PRO=0;QA=304;QR=3608;RO=96;RPL=0;RPP=20.3821;RPPR=211.472;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:39,1:39:1461:1:39:0,-8.14463,-127.866 0/0:24:23,1:23:870:1:37:0,-3.52689,-74.9225 0/1:40:34,6:34:1277:6:228:-8.84338,0,-103.178 dDocent_Contig_1872 16 . T C 73.9982 . AB=0.140625;ABP=74.8046;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1M11I1X1M2X;DP=64;DPB=83.8;DPRA=0;EPP=22.5536;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=345;QR=2138;RO=55;RPL=0;RPP=22.5536;RPPR=122.441;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:12,3:12:477:3:109:-5.65024,0,-38.7674 0|1:34:30,4:30:1148:4:158:-4.36563,0,-93.3733 0|1:15:13,2:13:513:2:78:-2.88785,0,-42.0013 dDocent_Contig_1874 106 . N T 272.34 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=9;CIGAR=2X;DP=9;DPB=9;DPRA=0;EPP=22.5536;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=10.8435;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=299;QR=0;RO=0;RPL=0;RPP=22.5536;RPPR=0;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:9:0,9:0:0:9:299:-27.234,-2.70927,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_1876 5 . T G 256.56 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=8;CIGAR=5I1X3M1X2M1X1M2X;DP=9;DPB=62;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1.5;MQM=59;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=89;PQA=3446;PQR=10;PRO=1;QA=282;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:6:0,5:0:0:5:173:-15.5618,-1.50515,0 1|1:3:0,3:0:0:3:109:-9.79287,-0.90309,0 dDocent_Contig_1878 179 . C T 2119.55 . AB=0.136857;ABP=1584.85;AC=3;AF=0.5;AN=6;AO=189;CIGAR=1X;DP=1381;DPB=1381;DPRA=0;EPP=244.572;EPPR=1972.64;GTI=0;LEN=1;MEANALT=2.33333;MQM=57.7407;MQMR=57.4776;NS=3;NUMALT=1;ODDS=0;PAIRED=0.814815;PAIREDR=0.871296;PAO=0;PQA=0;PQR=0;PRO=0;QA=7034;QR=45461;RO=1181;RPL=189;RPP=413.419;RPPR=2567.52;RPR=0;RUN=1;SAF=22;SAP=244.572;SAR=167;SRF=73;SRP=1972.64;SRR=1108;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:516:458,55:458:17676:55:2032:-27.9633,0,-1413.94 0/1:503:424,76:424:16162:76:2897:-108.428,0,-1279.37 0/1:362:299,58:299:11623:58:2105:-81.0869,0,-920.906 dDocent_Contig_1884 43 . T G 2052.92 . AB=0.71875;ABP=42.9111;AC=3;AF=0.5;AN=6;AO=69;CIGAR=1X;DP=96;DPB=96;DPRA=0;EPP=152.842;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2653;QR=1062;RO=27;RPL=0;RPP=152.842;RPPR=61.6401;RPR=69;RUN=1;SAF=69;SAP=152.842;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:16,20:16:629:20:780:-59.6823,0,-46.1052 0/1:34:8,26:8:316:26:1007:-80.6912,0,-18.5698 0/1:26:3,23:3:117:23:866:-70.4295,0,-3.0836 dDocent_Contig_1887 98 . N C 138.295 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=137;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 dDocent_Contig_1888 13 . T C 190.216 . AB=0.4375;ABP=3.55317;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=76;DPB=76;DPRA=0.533333;EPP=18.2106;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=281;QR=2754;RO=69;RPL=0;RPP=18.2106;RPPR=152.842;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:729:0:0:0,-5.41854,-65.9351 0/1:16:9,7:9:360:7:281:-20.8455,0,-27.9469 0/0:42:42,0:42:1665:0:0:0,-12.6433,-150.074 dDocent_Contig_1890 17 . A G 122.831 . AB=0.241379;ABP=19.8579;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=77;DPB=77;DPRA=1.20833;EPP=18.2106;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=250;QR=2698;RO=70;RPL=0;RPP=18.2106;RPPR=155.013;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:912:0:0:0,-7.22472,-82.3944 0/1:29:22,7:22:854:7:250:-14.107,0,-68.4467 0/0:24:24,0:24:932:0:0:0,-7.22472,-84.1856 dDocent_Contig_1892 15 . C A 134.501 . AB=0.163636;ABP=57.0602;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=70;DPB=70;DPRA=0;EPP=24.725;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=405;QR=2381;RO=60;RPL=0;RPP=24.725;RPPR=133.299;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:28,4:28:1101:4:162:-5.334,0,-89.7378 0/1:23:18,5:18:716:5:202:-11.6384,0,-57.8381 0/0:15:14,1:14:564:1:41:0,-0.420883,-47.0063 dDocent_Contig_1895 93 . C G 1046.79 . AB=0.529412;ABP=3.26577;AC=4;AF=0.666667;AN=6;AO=38;CIGAR=1X;DP=54;DPB=54;DPRA=0;EPP=85.5263;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1305;QR=550;RO=16;RPL=38;RPP=85.5263;RPPR=37.7539;RPR=0;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:6,9:6:210:9:313:-23.9914,0,-14.7266 1/1:20:0,20:0:0:20:684:-61.878,-6.0206,0 0/1:19:10,9:10:340:9:308:-22.3328,0,-25.2093 dDocent_Contig_1896 24 . T C 752.047 . AB=0.15528;ABP=335.367;AC=3;AF=0.5;AN=6;AO=50;CIGAR=1X;DP=322;DPB=322;DPRA=0;EPP=111.584;EPPR=593.651;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.98;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1963;QR=10664;RO=272;RPL=0;RPP=111.584;RPPR=593.651;RPR=50;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=272;SRP=593.651;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:105:85,20:85:3282:20:794:-40.1707,0,-263.859 0/1:60:44,16:44:1729:16:610:-37.1591,0,-137.781 0/1:157:143,14:143:5653:14:559:-3.39185,0,-461.35 dDocent_Contig_1897 72 . G A 46.7768 . AB=0.235294;ABP=13.3567;AC=2;AF=0.5;AN=4;AO=4;CIGAR=1X;DP=17;DPB=17;DPRA=0;EPP=11.6962;EPPR=11.1951;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=40;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=150;QR=475;RO=13;RPL=4;RPP=11.6962;RPPR=11.1951;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:260:2:75:-4.03631,0,-19.8592 0/1:8:6,2:6:215:2:75:-4.33734,0,-16.2977 ./.:.:.:.:.:.:.:. dDocent_Contig_1898 11 . A C 3046.67 . AB=0.636943;ABP=28.5839;AC=3;AF=0.5;AN=6;AO=100;CIGAR=1X;DP=157;DPB=157;DPRA=0;EPP=220.158;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.98;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3963;QR=2194;RO=57;RPL=0;RPP=220.158;RPPR=126.784;RPR=100;RUN=1;SAF=100;SAP=220.158;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:21,32:21:810:32:1275:-99.0614,0,-57.262 0/1:48:14,34:14:548:34:1350:-107.311,0,-35.2154 0/1:56:22,34:22:836:34:1338:-103.817,0,-58.6977 dDocent_Contig_1899 36 . T C 112.788 . AB=0.145161;ABP=70.8163;AC=1;AF=0.166667;AN=6;AO=21;CIGAR=1X;DP=216;DPB=216;DPRA=0;EPP=48.6112;EPPR=426.447;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=808;QR=5961;RO=195;RPL=0;RPP=48.6112;RPPR=426.447;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=195;SRP=426.447;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:73:67,6:67:1995:6:227:0,-1.18352,-159.007 0/1:62:53,9:53:1631:9:349:-13.1026,0,-128.387 0/0:81:75,6:75:2335:6:232:0,-3.13667,-189.154 dDocent_Contig_1900 98 . N T 62.694 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=66;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:66:-6.26831,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_1901 42 . G A 5687.01 . AB=0.626087;ABP=18.8904;AC=4;AF=0.666667;AN=6;AO=179;CIGAR=2X;DP=238;DPB=238;DPRA=0;EPP=391.704;EPPR=113.755;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7080;QR=1921;RO=51;RPL=0;RPP=391.704;RPPR=113.755;RPR=179;RUN=1;SAF=179;SAP=391.704;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:123:9,107,7:9:338:107,7:4223,285:-349.29,-4.5445,0,-328.488,-8.6859,-354.062 0|1:52:22,30,0:22:842:30,0:1182,0:-91.0143,0,-60.4376,-97.6369,-69.4685,-166.718 0|1:63:20,42,0:20:741:42,0:1675,0:-131.92,0,-47.9421,-137.941,-60.5854,-198.545 dDocent_Contig_1902 9 . T A 1368.67 . AB=0.0482955;ABP=626.84;AC=0;AF=0;AN=6;AO=17;CIGAR=1X5M1X1M;DP=352;DPB=360.5;DPRA=0;EPP=39.9253;EPPR=128.956;GTI=0;LEN=1;MEANALT=15.6667;MQM=60;MQMR=59.0517;NS=3;NUMALT=9;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=187.5;PRO=5;QA=642;QR=2269;RO=58;RPL=0;RPP=39.9253;RPPR=128.956;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:132:24,17,8,3,0,18,15,8,9,11:24:927:17,8,3,0,18,15,8,9,11:507,314,112,0,698,575,321,362,430:-42.0085,-10.5741,-81.5165,-23.4022,-60.8047,-97.0552,-40.0615,-77.4629,-90.2921,-115.218,-49.2332,-86.634,-99.4634,-116.121,-125.293,0,-37.4045,-50.2322,-66.8908,-76.0621,-70.6436,-4.08671,-41.4909,-54.3192,-70.9779,-80.1493,-30.9178,-75.6338,-27.2065,-64.6088,-77.4375,-94.0957,-103.267,-54.0363,-58.1232,-100.859,-19.9346,-57.3374,-70.1665,-86.8249,-95.9962,-46.7649,-50.8519,-73.9702,-93.287,-20.3016,-57.7044,-70.5328,-87.191,-96.3623,-47.1317,-51.2185,-74.3366,-67.0655,-93.0509 0|0:93:20,7,0,5,2,6,2,7,19,5:20:785:7,0,5,2,6,2,7,19,5:63,0,189,81,239,72,275,758,204:-55.5481,-59.7502,-122.198,-61.5687,-124.305,-126.128,-46.0713,-108.81,-110.632,-109.127,-60.0171,-122.753,-124.575,-109.08,-123.973,-47.6014,-110.34,-112.161,-96.6659,-110.609,-110.355,-56.2319,-118.969,-120.791,-105.296,-119.239,-106.825,-120.189,-41.9169,-104.657,-106.478,-90.9826,-104.926,-92.5119,-101.142,-104.371,0,-62.7525,-64.5714,-49.0741,-63.0197,-50.6041,-59.2346,-44.9197,-58.8518,-49.6447,-112.383,-114.205,-98.7092,-112.652,-100.238,-108.868,-94.5551,-52.6474,-112.699 0|0:127:14,12,5,9,8,7,5,4,17,8:14:557:12,5,9,8,7,5,4,17,8:298,200,341,317,282,197,154,674,303:-44.8335,-27.7206,-69.9759,-32.5678,-57.1091,-76.9311,-21.0828,-45.6249,-50.4722,-64.2426,-41.502,-66.0435,-70.8898,-59.4058,-84.9605,-30.2631,-54.8047,-59.652,-48.1675,-68.5854,-74.0242,-33.3331,-57.8744,-62.722,-51.2375,-71.6551,-60.4173,-77.6963,-39.8154,-64.3564,-69.2039,-57.7195,-78.137,-66.8992,-69.9692,-84.479,0,-24.5439,-29.3903,-17.9054,-38.3252,-27.0858,-30.1557,-36.638,-40.7529,-25.3503,-49.8922,-54.7395,-43.255,-63.6731,-52.4349,-55.5048,-61.9868,-22.173,-68.8109 dDocent_Contig_1903 13 . C T 192.286 . AB=0.185714;ABP=63.067;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=97;DPB=97;DPRA=0;EPP=33.4109;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.7952;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.963855;PAO=0;PQA=0;PQR=0;PRO=0;QA=516;QR=3286;RO=83;RPL=0;RPP=33.4109;RPPR=183.243;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:17,3:17:686:3:111:-4.33332,0,-56.0485 0/0:27:26,1:26:1036:1:37:0,-4.42998,-86.2581 0/1:50:40,10:40:1564:10:368:-18.4175,0,-125.941 dDocent_Contig_1904 89 . A G 134.561 . AB=0.181818;ABP=51.3749;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=154;DPB=154;DPRA=1.11111;EPP=24.725;EPPR=315.702;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=350;QR=5121;RO=144;RPL=10;RPP=24.725;RPPR=315.702;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=144;SRP=315.702;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:53:53,0:53:1899:0:0:0,-15.9546,-171.181 0/0:46:46,0:46:1655:0:0:0,-13.8474,-149.236 0/1:55:45,10:45:1567:10:350:-15.28,0,-124.764 dDocent_Contig_1905 14 . A G 374.66 . AB=0.0925926;ABP=80.8616;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X4M;DP=75;DPB=75;DPRA=0;EPP=13.8677;EPPR=113.755;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=59.0588;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.960784;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=2011;RO=51;RPL=0;RPP=13.8677;RPPR=113.755;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:17:12,3,2,0:12:469:3,2,0:118,82,0:-6.0842,0,-37.6296,-2.9218,-31.7618,-40.8667,-9.69656,-38.5327,-41.4688,-48.2391 0|0:21:19,0,0,2:19:745:0,0,2:0,0,82:-1.45805,-7.17762,-68.1041,-7.17762,-68.1041,-68.1041,0,-61.3341,-61.3341,-60.7321 0|0:37:20,0,3,14:20:797:0,3,14:0,122,505:-34.8649,-40.8854,-106.534,-30.8138,-96.4692,-95.5661,0,-65.6249,-55.5606,-61.4105 dDocent_Contig_1906 13 . C T 3827.52 . AB=0.0330189;ABP=404.569;AC=0;AF=0;AN=6;AO=7;CIGAR=1X3M1X;DP=338;DPB=338;DPRA=0;EPP=18.2106;EPPR=419.933;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=281;QR=7648;RO=192;RPL=0;RPP=18.2106;RPPR=419.933;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=192;SRP=419.933;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:100:61,6,32:61:2416:6,32:241,1286:-87.6296,-86.1324,-283.176,0,-179.008,-189.235 0|0:126:72,0,54:72:2862:0,54:0,2143:-155.11,-176.784,-412.415,0,-236.028,-219.772 0|0:112:59,1,50:59:2370:1,50:40,1984:-145.535,-160.001,-354.996,0,-191.997,-180.241 dDocent_Contig_1907 50 . A G 161.52 . AB=0.2;ABP=38.1882;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=132;DPB=132;DPRA=1.03448;EPP=22.5536;EPPR=270.101;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=343;QR=4798;RO=123;RPL=9;RPP=22.5536;RPPR=270.101;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:36,9:36:1402:9:343:-17.6749,0,-112.9 0/0:42:42,0:42:1601:0:0:0,-12.6433,-144.329 0/0:45:45,0:45:1795:0:0:0,-13.5463,-161.767 dDocent_Contig_1908 14 . G A 69.1585 . AB=0.2;ABP=22.5536;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=54;DPB=54;DPRA=0.431034;EPP=13.8677;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=181;QR=1933;RO=49;RPL=0;RPP=13.8677;RPPR=109.412;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:11,4:11:439:4:140:-8.4215,0,-35.3505 0/0:29:29,0:29:1139:0:0:0,-8.72987,-102.794 0/1:10:9,1:9:355:1:41:-1.08427,0,-29.2984 dDocent_Contig_1910 62 . C A 280.583 . AB=0.254545;ABP=31.7922;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=67;DPB=67;DPRA=2.29167;EPP=33.4109;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=527;QR=2081;RO=53;RPL=14;RPP=33.4109;RPPR=118.098;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:23,9:23:896:9:340:-21.3186,0,-71.3165 0/0:12:12,0:12:478:0:0:0,-3.61236,-43.3719 0/1:23:18,5:18:707:5:187:-10.2626,0,-57.0292 dDocent_Contig_1911 1 . N G 66.4848 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_1912 125 . C G 4203.46 . AB=0.0515464;ABP=341.894;AC=0;AF=0;AN=6;AO=10;CIGAR=1X3M1X;DP=315;DPB=315;DPRA=0;EPP=24.725;EPPR=289.645;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=328;QR=4392;RO=132;RPL=0;RPP=24.725;RPPR=289.645;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=289.645;SRR=132;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:101:57,6,37:57:1900:6,37:199,1278:-86.6926,-87.7547,-239.729,0,-137.691,-142.651 0|0:121:42,0,77:42:1390:0,77:0,2586:-197.004,-209.647,-322.065,0,-112.576,-89.397 0|0:93:33,4,55:33:1102:4,55:129,1874:-142.173,-141.705,-229.713,0,-78.8639,-72.7098 dDocent_Contig_1913 49 . C T 2948.94 . AB=0.387097;ABP=9.87495;AC=1;AF=0.166667;AN=6;AO=24;CIGAR=1X2M1X10M;DP=172;DPB=150.5;DPRA=0;EPP=55.1256;EPPR=92.0407;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=926;QR=1546;RO=41;RPL=24;RPP=55.1256;RPPR=92.0407;RPR=0;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:45:4,0,22,19:4:148:0,22,19:0,826,750:-116.08,-117.285,-129.391,-49.6291,-61.7323,-55.1097,-55.5636,-67.6703,0,-61.9507 0|0:65:30,0,14,21:30:1134:0,14,21:0,533,838:-59.9953,-69.0262,-161.973,-25.3165,-118.258,-114.043,0,-92.9515,-49.2337,-86.6299 1|0:62:7,24,7,23:7:264:24,7,23:926,253,878:-124.341,-50.4008,-64.8127,-105.801,-51.3907,-125.33,-54.4177,0,-55.4075,-69.1301 dDocent_Contig_1914 131 . T A 293.165 . AB=0.0519481;ABP=137.275;AC=3;AF=0.5;AN=6;AO=4;CIGAR=2X3M2X;DP=77;DPB=77;DPRA=0;EPP=3.0103;EPPR=98.5551;GTI=0;LEN=1;MEANALT=4.33333;MQM=56.5;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=1588;RO=44;RPL=0;RPP=11.6962;RPPR=98.5551;RPR=4;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=0;SRP=98.5551;SRR=44;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:39:28,4,0,2,4:28:1026:4,0,2,4:153,0,80,133:-4.12499,0,-82.6518,-12.5538,-83.8559,-96.4009,-5.9662,-77.2742,-89.8194,-89.2174,-1.81139,-73.1,-85.6447,-79.0632,-84.4406 0|1:20:10,6,0,1,2:10:360:6,0,1,2:227,0,41,73:-15.584,0,-27.5498,-18.5943,-29.356,-47.9574,-15.2082,-25.9699,-44.5725,-44.2715,-12.6337,-23.3919,-41.9936,-38.6085,-41.3915 0|1:18:6,7,2,1,0:6:202:7,2,1,0:212,72,39,0:-15.1272,0,-14.255,-11.0565,-10.4889,-26.8301,-13.7303,-13.1605,-24.2308,-29.8038,-16.9333,-16.3622,-27.4321,-30.1049,-33.3054 dDocent_Contig_1915 15 . T C 141.591 . AB=0.177778;ABP=43.5927;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=107;DPB=107;DPRA=1.45161;EPP=20.3821;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=324;QR=3783;RO=99;RPL=0;RPP=20.3821;RPPR=217.986;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:39,0:39:1491:0:0:0,-11.7402,-134.452 0/0:23:23,0:23:869:0:0:0,-6.92369,-78.5171 0/1:45:37,8:37:1423:8:324:-15.983,0,-114.789 dDocent_Contig_1917 51 . G A 1926.72 . AB=0.62037;ABP=16.6021;AC=3;AF=0.5;AN=6;AO=67;CIGAR=1X;DP=108;DPB=108;DPRA=0;EPP=148.499;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2553;QR=1592;RO=41;RPL=67;RPP=148.499;RPPR=92.0407;RPR=0;RUN=1;SAF=67;SAP=148.499;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:16,24:16:606:24:906:-69.8025,0,-42.8266 0/1:33:6,27:6:231:27:1019:-82.0741,0,-11.2217 0/1:35:19,16:19:755:16:628:-46.3186,0,-57.7369 dDocent_Contig_1918 98 . N G 98.551 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=99;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:30:-2.99957,-0.30103,0 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 dDocent_Contig_1919 71 . T A 71.9081 . AB=0.162162;ABP=39.6906;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=55;DPB=55;DPRA=4.11111;EPP=16.0391;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=220;QR=1873;RO=49;RPL=6;RPP=16.0391;RPPR=109.412;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:429:0:0:0,-3.31133,-38.9644 0/0:7:7,0:7:262:0:0:0,-2.10721,-23.9378 0/1:37:31,6:31:1182:6:220:-9.01471,0,-95.5405 dDocent_Contig_1920 90 . G A 2053.32 . AB=0.518519;ABP=3.25157;AC=4;AF=0.666667;AN=6;AO=76;CIGAR=1X;DP=117;DPB=117;DPRA=0;EPP=168.042;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2657;QR=1457;RO=41;RPL=76;RPP=168.042;RPPR=92.0407;RPR=0;RUN=1;SAF=76;SAP=168.042;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:20,20:20:702:20:711:-52.2746,0,-51.4611 0/1:41:19,22:19:683:22:779:-58.0882,0,-49.4543 1/1:36:2,34:2:72:34:1167:-98.492,-4.00036,0 dDocent_Contig_1921 9 . G A 36423.9 . AB=0.513503;ABP=6.93926;AC=3;AF=0.5;AN=6;AO=1274;CIGAR=1X;DP=2481;DPB=2481;DPRA=0;EPP=2769.47;EPPR=2439.4;GTI=0;LEN=1;MEANALT=2;MQM=59.9686;MQMR=56.2932;NS=3;NUMALT=1;ODDS=0;PAIRED=0.766091;PAIREDR=0.548128;PAO=0;PQA=0;PQR=0;PRO=0;QA=48597;QR=42386;RO=1122;RPL=0;RPP=2769.47;RPPR=2439.4;RPR=1274;RUN=1;SAF=1274;SAP=2769.47;SAR=0;SRF=1122;SRP=2439.4;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:865:460,390:460:17244:390:14869:-1080.17,0,-1252.22 0/1:500:257,226:257:9681:226:8551:-623.614,0,-689.553 0/1:1116:405,658:405:15461:658:25177:-1944.13,0,-1029.31 dDocent_Contig_1922 24 . C A 2152.3 . 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AB=0.133333;ABP=55.5599;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=135;DPB=135;DPRA=0;EPP=31.2394;EPPR=267.93;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=523;QR=4794;RO=122;RPL=0;RPP=31.2394;RPPR=267.93;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=122;SRP=267.93;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:52:48,4:48:1879:4:157:0,-1.14567,-154.817 0/0:38:35,3:35:1378:3:121:0,-0.158943,-113 0/1:45:39,6:39:1537:6:245:-8.88312,0,-125.02 dDocent_Contig_1925 11 . G A 100.758 . AB=0.0512821;ABP=71.2168;AC=0;AF=0;AN=6;AO=2;CIGAR=2M1I2M1X3M;DP=131;DPB=137;DPRA=1.08333;EPP=7.35324;EPPR=183.243;GTI=0;LEN=1;MEANALT=4;MQM=16;MQMR=60;NS=3;NUMALT=7;ODDS=1.38778e-17;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=3160;RO=83;RPL=0;RPP=7.35324;RPPR=183.243;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:39:22,0,0,4,2,0,10,1:22:840:0,0,4,2,0,10,1:0,0,113,79,0,264,22:-11.5854,-18.2081,-87.2119,-18.2081,-87.2119,-87.2119,-10.3168,-79.3352,-79.3352,-78.1311,-15.9426,-84.9457,-84.9457,-77.0705,-84.3437,-18.2081,-87.2119,-87.2119,-79.3352,-84.9457,-87.2119,0,-69.042,-69.042,-61.1725,-66.7809,-69.042,-66.0317,-16.8012,-85.8059,-85.8059,-77.9298,-83.5401,-85.8059,-67.6381,-85.5048 0|0:36:28,3,0,0,0,0,3,2:28:1047:3,0,0,0,0,3,2:117,0,0,0,0,88,64:0,-1.36674,-86.2797,-8.42884,-87.1828,-94.2334,-8.42884,-87.1828,-94.2334,-94.2334,-8.42884,-87.1828,-94.2334,-94.2334,-94.2334,-8.42884,-87.1828,-94.2334,-94.2334,-94.2334,-94.2334,-2.03261,-80.7871,-87.8364,-87.8364,-87.8364,-87.8364,-86.9333,-3.81059,-82.5708,-89.6207,-89.6207,-89.6207,-89.6207,-83.2245,-89.0186 0|0:56:33,1,6,0,0,3,5,8:33:1273:1,6,0,0,3,5,8:39,151,0,0,111,150,164:-0.728329,-8.99007,-113.341,-0.491783,-103.49,-103.354,-10.6623,-113.642,-105.16,-115.312,-10.6623,-113.642,-105.16,-115.312,-115.312,-9.33459,-112.31,-103.83,-113.979,-113.979,-113.076,0,-103.004,-94.5228,-104.673,-104.673,-103.342,-103.168,-0.387282,-103.378,-94.9002,-105.047,-105.047,-103.718,-94.4116,-102.639 dDocent_Contig_1926 98 . N T 235.451 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=3X;DP=8;DPB=10.3333;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=56.875;MQMR=0;NS=1;NUMALT=1;ODDS=10.1503;PAIRED=0;PAIREDR=0;PAO=2;PQA=70;PQR=0;PRO=0;QA=262;QR=0;RO=0;RPL=8;RPP=20.3821;RPPR=0;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:8:0,8:0:0:8:262:-23.5451,-2.40824,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_1927 210 . C G 10959.3 . AB=0.285843;ABP=889.37;AC=3;AF=0.5;AN=6;AO=636;CIGAR=1X;DP=2225;DPB=2225;DPRA=0;EPP=1232.15;EPPR=3281.95;GTI=0;LEN=1;MEANALT=1;MQM=50.9921;MQMR=48.6092;NS=3;NUMALT=1;ODDS=1.11022e-16;PAIRED=0.921384;PAIREDR=0.964128;PAO=0;PQA=0;PQR=0;PRO=0;QA=20271;QR=50399;RO=1589;RPL=636;RPP=1384.07;RPPR=3453.48;RPR=0;RUN=1;SAF=18;SAP=1232.15;SAR=618;SRF=20;SRP=3281.95;SRR=1569;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:1066:738,328:738:23282:328:10373:-586.461,0,-1698.5 0/1:554:401,153:401:12701:153:4868:-256.582,0,-929.799 0/1:605:450,155:450:14416:155:5030:-258.407,0,-1057.86 dDocent_Contig_1930 7 . C T 437.938 . AB=0.261905;ABP=44.3717;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1X;DP=84;DPB=84;DPRA=0;EPP=50.7827;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.2258;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.854839;PAO=0;PQA=0;PQR=0;PRO=0;QA=817;QR=2365;RO=62;RPL=0;RPP=50.7827;RPPR=137.642;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:22,13:22:833:13:472:-32.2737,0,-64.65 0/1:15:12,3:12:447:3:116:-6.30225,0,-36.0562 0/1:34:28,6:28:1085:6:229:-10.7407,0,-87.6542 dDocent_Contig_1931 121 . A T 368.803 . AB=0.367089;ABP=15.1321;AC=1;AF=0.166667;AN=6;AO=29;CIGAR=1X3M1X;DP=79;DPB=79;DPRA=0;EPP=65.983;EPPR=59.4686;GTI=0;LEN=1;MEANALT=2.66667;MQM=16;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1030;QR=852;RO=26;RPL=0;RPP=65.983;RPPR=59.4686;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:40:9,21,9:9:280:21,9:748,330:-21.0565,0,-16.1906,-4.30743,-3.09455,-24.128 0|0:14:5,4,4:5:164:4,4:141,135:-8.09979,-5.11725,-17.1927,0,-8.85422,-12.1311 0|0:25:12,4,9:12:408:4,9:141,302:-13.2468,-12.3472,-44.2955,0,-28.7393,-30.5219 dDocent_Contig_1932 54 . C G 398.917 . AB=0.143322;ABP=681.486;AC=2;AF=0.333333;AN=6;AO=123;CIGAR=1X;DP=963;DPB=963;DPRA=0;EPP=142.85;EPPR=1003.5;GTI=0;LEN=1;MEANALT=1.66667;MQM=59.3008;MQMR=57.5842;NS=3;NUMALT=1;ODDS=0;PAIRED=0.430894;PAIREDR=0.415771;PAO=0;PQA=0;PQR=0;PRO=0;QA=3460;QR=21051;RO=837;RPL=93;RPP=73.08;RPPR=311.803;RPR=30;RUN=1;SAF=76;SAP=17.8575;SAR=47;SRF=485;SRP=48.9018;SRR=352;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:349:313,35:313:7666:35:934:0,-20.5876,-598.831 0/1:433:366,67:366:9160:67:1917:-41.7021,0,-671.782 0/1:181:158,21:158:4225:21:609:-0.975171,0,-310.575 dDocent_Contig_1933 109 . C A 51.4877 . AB=0.222222;ABP=15.074;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=39;DPB=39;DPRA=1.71429;EPP=11.6962;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=55.1714;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.857143;PAO=0;PQA=0;PQR=0;PRO=0;QA=134;QR=1144;RO=35;RPL=0;RPP=11.6962;RPPR=79.0118;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=79.0118;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:367:0:0:0,-3.31133,-30.5972 0/1:18:14,4:14:466:4:134:-6.97267,0,-35.4697 0/0:10:10,0:10:311:0:0:0,-3.0103,-27.5082 dDocent_Contig_1934 107 . N T 378.39 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=13;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=31.2394;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=405;QR=0;RO=0;RPL=0;RPP=31.2394;RPPR=0;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:9:0,9:0:0:9:284:-25.8696,-2.70927,0 1/1:2:0,2:0:0:2:53:-5.03367,-0.60206,0 1/1:2:0,2:0:0:2:68:-6.45793,-0.60206,0 dDocent_Contig_1935 24 . G T 705.305 . AB=0.151899;ABP=335.603;AC=2;AF=0.333333;AN=6;AO=51;CIGAR=1X;DP=447;DPB=447;DPRA=0;EPP=89.2305;EPPR=824.18;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.882353;PAIREDR=0.964467;PAO=0;PQA=0;PQR=0;PRO=0;QA=1991;QR=15487;RO=394;RPL=6;RPP=67.7713;RPPR=790.494;RPR=45;RUN=1;SAF=48;SAP=89.2305;SAR=3;SRF=390;SRP=824.18;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:148:131,17:131:5146:17:686:-17.5181,0,-418.494 0/1:168:135,31:135:5287:31:1184:-56.5353,0,-425.391 0/0:131:128,3:128:5054:3:121:0,-28.1547,-443.469 dDocent_Contig_1936 32 . G C 120.187 . AB=0.209302;ABP=34.5724;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=56;DPB=56;DPRA=1.65385;EPP=22.5536;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=309;QR=1505;RO=47;RPL=0;RPP=22.5536;RPPR=105.07;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:20,4:20:610:4:136:-5.35097,0,-47.9644 0/0:13:13,0:13:421:0:0:0,-3.91339,-38.2014 0/1:19:14,5:14:474:5:173:-10.1906,0,-37.2632 dDocent_Contig_1938 15 . G A 640.813 . AB=0.132992;ABP=460.458;AC=1;AF=0.166667;AN=6;AO=86;CIGAR=1X;DP=865;DPB=865;DPRA=0;EPP=189.757;EPPR=1648.99;GTI=0;LEN=1;MEANALT=2.33333;MQM=56.2907;MQMR=59.3232;NS=3;NUMALT=1;ODDS=0;PAIRED=0.976744;PAIREDR=0.996042;PAO=0;PQA=0;PQR=0;PRO=0;QA=3415;QR=30025;RO=758;RPL=0;RPP=189.757;RPPR=1648.99;RPR=86;RUN=1;SAF=86;SAP=189.757;SAR=0;SRF=758;SRP=1648.99;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:315:285,26:285:11241:26:1019:0,-2.56066,-918.539 0/0:159:148,8:148:5847:8:323:0,-18.0716,-496.368 0/1:391:325,52:325:12937:52:2073:-65.9052,0,-1043.07 dDocent_Contig_1939 54 . G C 1023.87 . AB=0.482759;ABP=3.23494;AC=2;AF=0.333333;AN=6;AO=48;CIGAR=1X;DP=178;DPB=178;DPRA=0;EPP=107.241;EPPR=285.302;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.992308;PAO=0;PQA=0;PQR=0;PRO=0;QA=1688;QR=4567;RO=130;RPL=48;RPP=107.241;RPPR=285.302;RPR=0;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=130;SRP=285.302;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:91:85,6:85:2959:6:227:0,-6.60129,-245.721 0/1:42:19,23:19:694:23:820:-61.4647,0,-50.1448 0/1:45:26,19:26:914:19:641:-44.4453,0,-69.02 dDocent_Contig_1940 48 . G C 235.867 . AB=0.175676;ABP=70.6194;AC=1;AF=0.166667;AN=6;AO=26;CIGAR=1X;DP=771;DPB=771;DPRA=0;EPP=59.4686;EPPR=155.862;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.296644;PAO=0;PQA=0;PQR=0;PRO=0;QA=1035;QR=28374;RO=745;RPL=0;RPP=59.4686;RPPR=243.094;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=487;SRP=155.862;SRR=258;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:356:345,11:345:13103:11:439:0,-67.3031,-1138.78 0/0:341:339,2:339:12909:2:70:0,-96.0067,-1154.52 0/1:74:61,13:61:2362:13:526:-25.4106,0,-190.469 dDocent_Contig_1941 19 . T G 27604.9 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=815;CIGAR=1X4M;DP=902;DPB=902;DPRA=0;EPP=1473.88;EPPR=72.4974;GTI=0;LEN=1;MEANALT=5;MQM=59.4883;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.947239;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=31946;QR=1226;RO=32;RPL=0;RPP=1772.76;RPPR=72.4974;RPR=815;RUN=1;SAF=779;SAP=1473.88;SAR=36;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:361:17,17,325:17:659:17,325:604,12750:-1087.04,-1055.94,-1104.96,-43.6463,-61.6618,0 1|1:232:4,7,215:4:139:7,215:241,8411:-743.184,-726.89,-736.081,-53.4176,-47.2345,0 1|1:309:11,17,275:11:428:17,275:644,10785:-929.786,-880.299,-910.354,-47.6011,-29.9739,0 dDocent_Contig_1942 75 . A G 109.255 . AB=0.315789;ABP=14.2105;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=88;DPB=88;DPRA=1.52;EPP=29.068;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=263;QR=2018;RO=74;RPL=12;RPP=29.068;RPPR=163.699;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:26,12:26:684:12:263:-12.4483,0,-50.375 0/0:24:24,0:24:660:0:0:0,-7.22472,-59.6639 0/0:26:24,0:24:674:0:0:0,-7.22472,-60.7191 dDocent_Contig_1943 105 . N C 299.298 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=10;CIGAR=3X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=11.5366;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=329;QR=0;RO=0;RPL=0;RPP=24.725;RPPR=0;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:10:0,10:0:0:10:329:-29.9298,-3.0103,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_1944 183 . A T 907.771 . AB=0.390805;ABP=12.0207;AC=1;AF=0.166667;AN=6;AO=37;CIGAR=1X;DP=225;DPB=225;DPRA=1.79592;EPP=83.3548;EPPR=411.247;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1437;QR=6420;RO=188;RPL=37;RPP=83.3548;RPPR=411.247;RPR=0;RUN=1;SAF=0;SAP=83.3548;SAR=37;SRF=0;SRP=411.247;SRR=188;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:89:86,3:86:2860:3:120:0,-15.604,-246.428 0/0:49:49,0:49:1690:0:0:0,-14.7505,-152.368 0/1:87:53,34:53:1870:34:1317:-92.601,0,-142.372 dDocent_Contig_1945 42 . C T 709.527 . AB=0.227586;ABP=96.4735;AC=3;AF=0.5;AN=6;AO=33;CIGAR=1X;DP=145;DPB=145;DPRA=0;EPP=74.6689;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1323;QR=4415;RO=112;RPL=0;RPP=74.6689;RPPR=246.215;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:41,5:41:1613:5:194:-3.9839,0,-131.57 0/1:38:33,5:33:1301:5:200:-6.9404,0,-105.922 0/1:61:38,23:38:1501:23:929:-65.5498,0,-116.974 dDocent_Contig_1946 30 . G C 133.501 . AB=0.144578;ABP=94.0813;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=118;DPB=118;DPRA=1.18571;EPP=29.068;EPPR=233.186;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=457;QR=4093;RO=106;RPL=0;RPP=29.068;RPPR=233.186;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:25,4:25:967:4:155:-5.5936,0,-78.5954 0/1:54:46,8:46:1739:8:302:-11.2794,0,-140.492 0/0:35:35,0:35:1387:0:0:0,-10.536,-125.094 dDocent_Contig_1947 10 . T A 38.5263 . AB=0.157895;ABP=22.325;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=115;DPB=115;DPRA=0.395833;EPP=9.52472;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.973214;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=4465;RO=112;RPL=0;RPP=9.52472;RPPR=246.215;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:16,3:16:633:3:119:-5.37544,0,-51.5801 0/0:41:41,0:41:1623:0:0:0,-12.3422,-146.307 0/0:55:55,0:55:2209:0:0:0,-16.5566,-198.974 dDocent_Contig_1948 107 . N A 44.6585 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=47;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:47:-4.46475,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_1950 99 . N C 52.6313 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=3X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=28.5;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=71;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:71:-5.26204,-0.60206,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_1952 12 . A G 98.3172 . AB=0.363636;ABP=4.78696;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=53;DPB=53;DPRA=0.52381;EPP=11.6962;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=1940;RO=49;RPL=0;RPP=11.6962;RPPR=109.412;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1073:0:0:0,-8.12781,-96.8624 0/0:15:15,0:15:592:0:0:0,-4.51545,-53.6211 0/1:11:7,4:7:275:4:162:-11.6556,0,-21.8067 dDocent_Contig_1953 1 . N T 186.938 . AB=0.666667;ABP=4.45795;AC=6;AF=1;AN=6;AO=7;CIGAR=1X2M1X;DP=9;DPB=28;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1.66667;MQM=45.5714;MQMR=0;NS=3;NUMALT=3;ODDS=1.38778e-17;PAIRED=0;PAIREDR=0;PAO=27.5;PQA=926.5;PQR=30;PRO=2;QA=226;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,1,0,2:0:0:1,0,2:35,0,62:-5.83268,-3.21297,-2.91194,-5.83268,-3.21297,-5.83268,-2.61822,0,-2.61822,-2.01616 1|1:3:0,0,0,3:0:0:0,0,3:0,0,95:-7.85364,-7.85364,-7.85364,-7.85364,-7.85364,-7.85364,-0.90309,-0.90309,-0.90309,0 1|1:3:0,0,1,2:0:0:0,1,2:0,35,69:-8.2604,-8.2604,-8.2604,-5.51181,-5.51181,-5.21078,-2.7234,-2.7234,0,-2.12134 dDocent_Contig_1954 13 . G C 4135.07 . AB=0.0723684;ABP=727.311;AC=2;AF=0.333333;AN=6;AO=33;CIGAR=1X16M;DP=456;DPB=455.882;DPRA=0;EPP=74.6689;EPPR=107.241;GTI=0;LEN=1;MEANALT=22.6667;MQM=40;MQMR=40;NS=3;NUMALT=7;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0.142857;PQA=5.85714;PQR=5.85714;PRO=0.142857;QA=1265;QR=1873;RO=48;RPL=0;RPP=74.6689;RPPR=107.241;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:161:16,11,15,37,5,3,16,27:16:629:11,15,37,5,3,16,27:439,258,1423,184,93,614,1050:-134.854,-106.405,-150.985,-124.706,-139.331,-168.079,-31.8884,-46.5155,-64.8204,-68.6442,-125.969,-140.595,-158.894,-66.0807,-172.355,-133.017,-147.643,-165.941,-73.1285,-167.206,-180.004,-92.5472,-107.174,-125.474,-32.6569,-126.738,-133.785,-135.622,-59.8922,-74.5189,-92.8215,0,-94.0836,-101.131,-60.6606,-99.6572 1|0:160:11,0,10,31,9,9,12,24:11:432:0,10,31,9,9,12,24:0,166,1201,331,284,458,960:-128.35,-131.661,-164.563,-122.38,-155.282,-152.271,-39.7855,-72.6903,-63.4106,-63.3584,-106.834,-139.736,-130.455,-47.862,-137.027,-111.248,-144.151,-134.87,-52.2775,-119.324,-141.442,-96.4784,-129.382,-120.101,-37.5062,-104.554,-108.969,-125.769,-58.975,-91.8792,-82.5989,0,-67.0511,-71.4664,-56.6956,-84.6545 0|0:135:21,3,14,7,1,0,5,54:21:812:3,14,7,1,0,5,54:116,224,264,36,0,193,2136:-155.826,-153.268,-214.368,-149.581,-202.701,-207.366,-141.988,-195.111,-191.422,-201.884,-159.48,-212.603,-208.912,-201.323,-221.181,-162.148,-215.271,-211.58,-203.991,-221.482,-224.15,-147.354,-200.477,-196.788,-189.197,-206.689,-209.357,-207.852,0,-53.1368,-49.4601,-41.8548,-59.3496,-62.018,-47.2217,-45.7624 dDocent_Contig_1956 1 . N G 102.871 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=39;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:122:-10.2865,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_1957 12 . C A 23620.3 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=1052;CIGAR=1X;DP=1113;DPB=1113;DPRA=0;EPP=2287.4;EPPR=113.755;GTI=0;LEN=1;MEANALT=2.33333;MQM=28.307;MQMR=30.3529;NS=3;NUMALT=1;ODDS=0;PAIRED=0.989544;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=39968;QR=1931;RO=51;RPL=0;RPP=2287.4;RPPR=113.755;RPR=1052;RUN=1;SAF=1052;SAP=2287.4;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:273:11,258:11:389:258:9724:-567.529,-50.1869,0 1/1:302:6,291:6:228:291:11008:-678.273,-74.9223,0 1/1:538:34,503:34:1314:503:19236:-1115.75,-78.3245,0 dDocent_Contig_1958 16 . G A 1079.1 . AB=0.0909091;ABP=34.9902;AC=6;AF=1;AN=6;AO=2;CIGAR=2M1X5M;DP=62;DPB=62;DPRA=0;EPP=7.35324;EPPR=7.35324;GTI=0;LEN=1;MEANALT=7;MQM=40;MQMR=40;NS=3;NUMALT=5;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=67;QR=79;RO=2;RPL=0;RPP=7.35324;RPPR=7.35324;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=2;SRP=7.35324;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:33:1,0,4,22,5,0:1:40:0,4,22,5,0:0,157,670,198,0:-60.2998,-60.6009,-63.6312,-48.6265,-51.6575,-50.4533,-12.0342,-15.0656,-3.08475,-8.44293,-45.5476,-48.5787,-36.601,0,-47.0736,-60.6009,-63.6312,-51.6575,-15.0656,-48.5787,-63.6312 1|1:22:1,2,0,13,1,2:1:39:2,0,13,1,2:76,0,464,40,67:-37.47,-31.9149,-34.2965,-37.771,-34.8985,-40.7541,-2.88218,0,-5.87333,-1.95994,-34.7398,-31.8671,-37.7232,-2.83394,-37.4221,-32.6318,-29.7591,-35.6152,-0.724043,-32.584,-35.0132 1|1:7:0,3,0,4,0,0:0:0:3,0,4,0,0:120,0,160,0,0:-14.984,-12.4821,-11.5791,-14.984,-12.4821,-14.984,-2.73461,0,-2.73461,-1.53049,-14.984,-12.4821,-14.984,-2.73461,-14.984,-14.984,-12.4821,-14.984,-2.73461,-14.984,-14.984 dDocent_Contig_1959 15 . T A 5953.93 . AB=0.0952381;ABP=1228.24;AC=0;AF=0;AN=6;AO=82;CIGAR=1X2M1X;DP=861;DPB=861;DPRA=0;EPP=181.071;EPPR=450.334;GTI=0;LEN=1;MEANALT=12;MQM=21.9756;MQMR=35.2039;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3136;QR=7893;RO=206;RPL=0;RPP=181.071;RPPR=450.334;RPR=82;RUN=1;SAF=82;SAP=181.071;SAR=0;SRF=206;SRP=450.334;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:245:54,20,135,6:54:2049:20,135,6:754,3281,228:-197.262,-179.611,-313.301,0,-105.83,-99.0821,-196.212,-302.019,-122.417,-334.116 0|0:257:68,30,142,1:68:2610:30,142,1:1157,3022,39:-169.368,-151.376,-323.088,0,-142.351,-138.034,-186.857,-329.138,-177.799,-367.295 0|0:359:84,32,186,23:84:3234:32,186,23:1225,4060,816:-234.286,-201.527,-405.093,0,-155.165,-157.204,-197.697,-352.854,-151.324,-403.973 dDocent_Contig_1960 1 . N C 48.6425 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=13.75;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=108;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:66:-2.08293,-0.60206,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:42:-2.47669,-0.60206,0 dDocent_Contig_1961 1 . N C 632.573 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=25;CIGAR=1X4M;DP=27;DPB=27;DPRA=0;EPP=57.2971;EPPR=0;GTI=0;LEN=1;MEANALT=1.33333;MQM=38.4;MQMR=0;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=712;QR=0;RO=0;RPL=0;RPP=57.2971;RPPR=0;RPR=25;RUN=1;SAF=0;SAP=57.2971;SAR=25;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,0,3:0:0:0,3:0,81:-7.25122,-7.25122,-7.25122,-0.90309,-0.90309,0 1|1:5:0,0,5:0:0:0,5:0,169:-15.1724,-15.1724,-15.1724,-1.50515,-1.50515,0 1|1:19:0,2,17:0:0:2,17:66,462:-40.3559,-36.4326,-35.8306,-5.11751,-0.941492,0 dDocent_Contig_1962 8 . T C 8637.13 . AB=0.822884;ABP=580.744;AC=3;AF=0.5;AN=6;AO=525;CIGAR=1X;DP=638;DPB=638;DPRA=0;EPP=180.24;EPPR=119.144;GTI=0;LEN=1;MEANALT=2;MQM=29.3905;MQMR=47.1481;NS=3;NUMALT=1;ODDS=0;PAIRED=0.0933333;PAIREDR=0.842593;PAO=0;PQA=0;PQR=0;PRO=0;QA=19244;QR=4066;RO=108;RPL=0;RPP=1143.03;RPPR=237.529;RPR=525;RUN=1;SAF=366;SAP=180.24;SAR=159;SRF=92;SRP=119.144;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:192:20,171:20:751:171:6204:-272.384,0,-5.93881 0/1:229:28,200:28:1057:200:7279:-330.705,0,-10.9506 0/1:217:60,154:60:2258:154:5761:-266.146,0,-95.0271 dDocent_Contig_1963 1 . N G 15801.7 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=922;CIGAR=1X4M;DP=1019;DPB=1021.6;DPRA=0;EPP=1979.13;EPPR=0;GTI=0;LEN=1;MEANALT=3;MQM=26.3265;MQMR=0;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0;PAO=2;PQA=59;PQR=59;PRO=2;QA=19558;QR=0;RO=0;RPL=0;RPP=2005.11;RPPR=0;RPR=922;RUN=1;SAF=3;SAP=1979.13;SAR=919;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:228:0,18,210:0:0:18,210:519,4379:-351.271,-310.003,-304.585,-63.2163,-21.7813,0 1|1:229:0,14,214:0:0:14,214:361,4685:-380.54,-352.36,-348.145,-64.4204,-36.2344,0 1|1:562:0,57,498:0:0:57,498:1809,10494:-847.881,-702.365,-685.206,-149.913,-4.39174,0 dDocent_Contig_1964 4 . A T 158.471 . AB=0.2;ABP=26.4622;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X2M1X;DP=39;DPB=40;DPRA=1.66667;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=4;MQM=7.5;MQMR=0;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0;PAO=4;PQA=70;PQR=0;PRO=0;QA=207;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:9:0,0,3,5,0:0:0:0,3,5,0:0,33,57,0:-3.97143,-3.97143,-3.97143,-2.67598,-2.67598,-1.77289,-1.50515,-1.50515,-0.226723,0,-3.97143,-3.97143,-2.67598,-1.50515,-3.97143 1|0:9:0,3,2,3,0:0:0:3,2,3,0:104,20,47,0:-4.32467,-2.53835,-1.63526,-3.64039,-1.86648,-3.03833,-1.78607,0,-1.10737,-0.882982,-4.32467,-2.53835,-3.64039,-1.78607,-4.32467 0|0:21:0,3,10,6,2:0:0:3,10,6,2:103,100,108,18:-9.5376,-9.09814,-8.19505,-6.07192,-5.64627,-3.06162,-3.49229,-3.05046,0,-1.68611,-9.01345,-8.57531,-5.55421,-2.96595,-8.41139 dDocent_Contig_1965 17 . T C 17206.8 . AB=0.116424;ABP=1847.11;AC=0;AF=0;AN=6;AO=168;CIGAR=2M1X1M1X3M;DP=1443;DPB=1446.38;DPRA=0;EPP=367.818;EPPR=16.0391;GTI=0;LEN=1;MEANALT=28;MQM=22.7738;MQMR=35.3333;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=87.3333;PRO=2.33333;QA=3820;QR=233;RO=6;RPL=0;RPP=367.818;RPPR=16.0391;RPR=168;RUN=1;SAF=168;SAP=367.818;SAR=0;SRF=6;SRP=16.0391;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:427:2,40,74,29,56,159:2:78:40,74,29,56,159:922,2883,948,2016,4790:-551.369,-490.684,-484.6,-336.037,-280.707,-319.717,-482.208,-426.879,-272.229,-479.434,-401.354,-346.024,-191.372,-337.546,-390.452,-209.988,-154.665,0,-146.181,-65.3231,-168.08 0|0:433:1,46,50,10,44,157:1:38:46,50,10,44,157:1048,1983,275,1633,4650:-477.657,-409.561,-398.642,-328.202,-262.732,-316.078,-458.827,-393.358,-311.998,-458.745,-355.185,-289.715,-208.354,-338.981,-344.867,-146.835,-81.3734,0,-130.633,-26.9856,-102.502 0|0:583:3,82,22,17,107,235:3:117:82,22,17,107,235:1850,886,430,3540,6416:-697.177,-579.259,-561.361,-634.076,-522.041,-634.241,-668.655,-556.62,-611.437,-670.324,-438.921,-326.886,-381.703,-416.282,-413.498,-252.387,-140.358,-195.166,-229.748,0,-188.432 dDocent_Contig_1966 1 . N G 119.345 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=15.875;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=276;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:35:-0.499703,-0.30103,0 ./.:.:.:.:.:.:.:. 1/1:7:0,7:0:0:7:241:-11.069,-2.10721,0 dDocent_Contig_1967 23 . C G 143.418 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=37.75;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:41:-3.55448,-0.30103,0 1/1:1:0,1:0:0:1:38:-3.44614,-0.30103,0 1/1:2:0,2:0:0:2:77:-6.73765,-0.60206,0 dDocent_Contig_1973 2 . A G 384.971 . AB=0.472222;ABP=3.25157;AC=1;AF=0.166667;AN=6;AO=17;CIGAR=2X1M1X;DP=54;DPB=82.25;DPRA=2.4;EPP=39.9253;EPPR=0;GTI=0;LEN=1;MEANALT=3;MQM=11;MQMR=0;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0;PAO=38;PQA=1123;PQR=22.6667;PRO=0.666667;QA=556;QR=0;RO=0;RPL=0;RPP=39.9253;RPPR=0;RPR=17;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:15:0,1,0,1,13:0:0:1,0,1,13:30,0,14,130:-8.54447,-6.91914,-6.61811,-8.54447,-6.91914,-8.54447,-7.84952,-6.22407,-7.84952,-7.54849,-3.91339,-2.29043,-3.91339,-3.22662,0 0|0:3:0,1,0,0,2:0:0:1,0,0,2:35,0,0,25:-3.18783,-1.1133,-0.812268,-3.18783,-1.1133,-3.18783,-3.18783,-1.1133,-3.18783,-3.18783,-2.07395,0,-2.07395,-2.07395,-1.47189 1|0:36:0,0,17,2,17:0:0:0,17,2,17:0,556,21,301:-29.0568,-29.0568,-29.0568,-17.6063,-17.6063,-12.4888,-28.241,-28.241,-16.7918,-27.6389,-11.4411,-11.4411,0,-10.6262,-6.3236 dDocent_Contig_1974 29 . G C 13053.2 . AB=0.60022;ABP=82.226;AC=6;AF=1;AN=6;AO=545;CIGAR=1X6M;DP=908;DPB=907.143;DPRA=0;EPP=1186.46;EPPR=0;GTI=0;LEN=1;MEANALT=21.3333;MQM=28.2128;MQMR=0;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=15078;QR=0;RO=0;RPL=0;RPP=1186.46;RPPR=0;RPR=545;RUN=1;SAF=545;SAP=1186.46;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:335:0,39,3,14,19,207:0:0:39,3,14,19,207:1167,113,294,624,5523:-468.423,-384.165,-372.425,-461.267,-377.01,-460.364,-449.28,-365.023,-442.125,-445.065,-422.601,-338.343,-415.446,-403.458,-416.881,-84.2611,0,-77.1055,-65.1246,-38.4351,-21.9479 1|1:377:0,50,3,2,31,242:0:0:50,3,2,31,242:1636,110,45,982,7040:-623.221,-502.631,-487.58,-616.256,-495.667,-615.353,-620.195,-499.605,-613.23,-619.592,-551.654,-431.063,-544.689,-548.627,-542.322,-120.589,0,-113.625,-117.563,-49.0247,-47.7397 1|1:196:0,24,12,11,12,96:0:0:24,12,11,12,96:652,465,259,387,2515:-219.196,-173.56,-166.335,-190.994,-145.357,-187.382,-201.822,-156.185,-173.619,-198.51,-190.933,-145.296,-162.73,-173.558,-187.321,-45.6378,0,-17.4315,-28.2651,-17.3704,-16.7389 dDocent_Contig_1975 14 . G A 46.2728 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=15;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=98;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:27:-1.47424,-0.30103,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:71:-2.84286,-0.60206,0 dDocent_Contig_1978 8 . T C 11901.4 . AB=0.217957;ABP=1118.89;AC=6;AF=1;AN=6;AO=352;CIGAR=1X28M;DP=1615;DPB=1612.76;DPRA=0;EPP=767.369;EPPR=50.7827;GTI=0;LEN=1;MEANALT=96.3333;MQM=59.9801;MQMR=60;NS=3;NUMALT=4;ODDS=2.22045e-16;PAIRED=0;PAIREDR=0;PAO=2.25;PQA=88;PQR=88;PRO=2.25;QA=13496;QR=859;RO=22;RPL=0;RPP=767.369;RPPR=50.7827;RPR=352;RUN=1;SAF=352;SAP=767.369;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:513:11,10,45,100,132:11:428:10,45,100,132:221,648,3892,5062:-426.542,-415.671,-447.839,-396.847,-417.843,-418.479,-380.367,-401.364,-382.545,-385.442,-14.3119,-35.3098,-16.4826,0,-9.75741 1|1:383:7,3,37,60,86:7:272:3,37,60,86:66,530,2304,3261:-271.289,-269.168,-290.62,-246.595,-264.723,-257.812,-245.07,-263.198,-240.63,-249.364,-5.97295,-24.102,-1.52571,0,-2.44163 1|1:719:4,52,23,154,134:4:159:52,23,154,134:1129,323,6036,5173:-497.775,-426.788,-424.227,-482.871,-423.772,-489.04,-411.8,-352.704,-408.786,-378.534,-74.0936,-14.9907,-71.077,0,-46.8484 dDocent_Contig_1979 7 . C T 314.697 . AB=0.0612245;ABP=84.9501;AC=0;AF=0;AN=6;AO=3;CIGAR=1X2M1X3M1X3M1X;DP=171;DPB=172.25;DPRA=0;EPP=9.52472;EPPR=237.529;GTI=0;LEN=1;MEANALT=11;MQM=60;MQMR=60;NS=3;NUMALT=6;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=4200;RO=108;RPL=0;RPP=9.52472;RPPR=237.529;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:44:28,0,12,0,0,0,2:28:1083:0,12,0,0,0,2:0,192,0,0,0,82:-1.90206,-10.3309,-99.4203,0,-89.0121,-85.3998,-10.3309,-99.4203,-89.0121,-99.4203,-10.3309,-99.4203,-89.0121,-99.4203,-99.4203,-10.3309,-99.4203,-89.0121,-99.4203,-99.4203,-99.4203,-3.56813,-92.6855,-82.2801,-92.6855,-92.6855,-92.6855,-92.0835 0|0:49:23,3,2,3,2,3,5:23:889:3,2,3,2,3,5:63,22,117,79,102,203:-9.75123,-12.7343,-84.8732,-15.8011,-84.8955,-88.2398,-7.04812,-76.1568,-79.2224,-79.2007,-10.1746,-79.2808,-82.3464,-73.6077,-82.626,-8.39862,-77.5042,-80.5698,-71.8308,-74.9551,-80.548,0,-69.1164,-72.1821,-63.4422,-66.5667,-64.7898,-71.558 0|0:78:57,0,2,0,13,0,1:57:2228:0,2,0,13,0,1:0,32,0,515,0,41:-25.1389,-42.2976,-225.514,-40.5731,-223.774,-223.172,-42.2976,-225.514,-223.774,-225.514,0,-183.31,-181.571,-183.31,-179.396,-42.2976,-225.514,-223.774,-225.514,-183.31,-225.514,-38.9289,-222.148,-220.409,-222.148,-179.944,-222.148,-221.847 dDocent_Contig_1980 92 . C T 1519.48 . AB=0.607843;ABP=8.16222;AC=4;AF=0.666667;AN=6;AO=59;CIGAR=1X;DP=79;DPB=79;DPRA=0;EPP=131.127;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1888;QR=693;RO=20;RPL=59;RPP=131.127;RPPR=46.4397;RPR=0;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:28:0,28:0:0:28:905:-81.7507,-8.42884,0 0/1:22:10,12:10:347:12:356:-25.7057,0,-24.9426 0/1:29:10,19:10:346:19:627:-48.0145,0,-22.7444 dDocent_Contig_1981 59 . A G 2919.53 . AB=0.727891;ABP=69.3215;AC=3;AF=0.5;AN=6;AO=107;CIGAR=1X;DP=147;DPB=147;DPRA=0;EPP=235.358;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3787;QR=1415;RO=40;RPL=107;RPP=235.358;RPPR=89.8692;RPR=0;RUN=1;SAF=107;SAP=235.358;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:10,42:10:354:42:1471:-117.026,0,-16.5449 0/1:51:6,45:6:222:45:1623:-131.002,0,-4.98553 0/1:44:24,20:24:839:20:693:-49.4476,0,-62.5826 dDocent_Contig_1982 98 . N G 153.298 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=0;RO=0;RPL=6;RPP=16.0391;RPPR=0;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:27:-2.69978,-0.30103,0 1/1:3:0,3:0:0:3:60:-5.59869,-0.90309,0 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 dDocent_Contig_1983 112 . T C 291.833 . AB=0.368421;ABP=8.7247;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=51;DPB=51;DPRA=1.46154;EPP=33.4109;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=483;QR=1258;RO=37;RPL=0;RPP=33.4109;RPPR=83.3548;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=83.3548;SRR=37;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:444:0:0:0,-3.91339,-40.2879 0/1:27:16,11:16:548:11:379:-26.3144,0,-41.5176 0/1:11:8,3:8:266:3:104:-6.39176,0,-20.9532 dDocent_Contig_1984 84 . T C 168.087 . AB=0.466667;ABP=3.15506;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=64;DPB=64;DPRA=0;EPP=24.725;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=358;QR=1906;RO=54;RPL=10;RPP=24.725;RPPR=120.27;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:8,7:8:287:7:250:-18.3313,0,-21.661 0/0:24:23,1:23:815:1:36:0,-3.62644,-70.0732 0/0:25:23,2:23:804:2:72:0,-0.689027,-65.8405 dDocent_Contig_1985 43 . C T 161.821 . AB=0.204545;ABP=36.372;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=103;DPB=103;DPRA=1.49153;EPP=22.5536;EPPR=207.129;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=340;QR=3646;RO=94;RPL=0;RPP=22.5536;RPPR=207.129;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:35,9:35:1347:9:340:-17.705,0,-108.259 0/0:29:29,0:29:1098:0:0:0,-8.72987,-99.1106 0/0:30:30,0:30:1201:0:0:0,-9.0309,-108.365 dDocent_Contig_1986 16 . G A 1301.2 . AB=0.168514;ABP=433.458;AC=3;AF=0.5;AN=6;AO=76;CIGAR=1X;DP=451;DPB=451;DPRA=0;EPP=168.042;EPPR=817.312;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.986842;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3003;QR=14885;RO=375;RPL=0;RPP=168.042;RPPR=817.312;RPR=76;RUN=1;SAF=76;SAP=168.042;SAR=0;SRF=375;SRP=817.312;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:119:79,40:79:3112:40:1594:-107.874,0,-244.338 0/1:111:94,17:94:3719:17:653:-25.6789,0,-301.33 0/1:221:202,19:202:8054:19:756:-1.83677,0,-657.903 dDocent_Contig_1987 52 . T C 142.856 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=2X;DP=5;DPB=5;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:5:0,4:0:0:4:159:-14.2853,-1.20412,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_1988 7 . C G 313.839 . AB=0.306122;ABP=19.0083;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X;DP=152;DPB=152;DPRA=1.15217;EPP=37.7539;EPPR=298.331;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=561;QR=5168;RO=136;RPL=0;RPP=37.7539;RPPR=298.331;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=136;SRP=298.331;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:34,15:34:1280:15:526:-32.9067,0,-100.74 0/0:46:46,0:46:1742:0:0:0,-13.8474,-157.04 0/0:57:56,1:56:2146:1:35:0,-13.6601,-189.871 dDocent_Contig_1989 17 . G T 145.531 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=27.7143;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:103:-9.48088,-0.90309,0 1/1:4:0,4:0:0:4:142:-4.77082,-1.20412,0 ./.:.:.:.:.:.:.:. dDocent_Contig_1990 64 . A G 33.1885 . AB=0.135135;ABP=45.7942;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=52;DPB=52;DPRA=1.23333;EPP=13.8677;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=191;QR=1782;RO=47;RPL=5;RPP=13.8677;RPPR=105.07;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:14,2:14:529:2:78:-2.58699,0,-43.1364 0/1:21:18,3:18:685:3:113:-4.21778,0,-55.6617 0/0:15:15,0:15:568:0:0:0,-4.51545,-51.4593 dDocent_Contig_1991 56 . A G 869.128 . AB=0.444444;ABP=4.9405;AC=3;AF=0.5;AN=6;AO=32;CIGAR=1X;DP=72;DPB=72;DPRA=0;EPP=72.4974;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1256;QR=1589;RO=40;RPL=32;RPP=72.4974;RPPR=89.8692;RPR=0;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:26,11:26:1028:11:428:-27.7316,0,-81.6791 0/1:21:12,9:12:483:9:359:-26.3521,0,-37.5002 0/1:14:2,12:2:78:12:469:-38.3428,0,-3.18888 dDocent_Contig_1992 107 . N T 97.967 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:105:-9.79616,-0.90309,0 dDocent_Contig_1993 10 . A G 50.1505 . AB=0.148148;ABP=32.0437;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=88;DPB=88;DPRA=0.966667;EPP=16.0391;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=3251;RO=82;RPL=0;RPP=16.0391;RPPR=181.071;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:29,2:29:1143:2:79:0,-1.8343,-95.6558 0/0:30:30,0:30:1182:0:0:0,-9.0309,-106.659 0/1:27:23,4:23:926:4:162:-6.83894,0,-75.5136 dDocent_Contig_1995 117 . C T 3012.71 . AB=0.728395;ABP=39.7109;AC=4;AF=0.666667;AN=6;AO=110;CIGAR=1X;DP=134;DPB=134;DPRA=0;EPP=241.872;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3692;QR=734;RO=24;RPL=0;RPP=241.872;RPPR=55.1256;RPR=110;RUN=1;SAF=0;SAP=241.872;SAR=110;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:8,29:8:243:29:945:-74.2081,0,-11.0315 1/1:53:2,51:2:42:51:1730:-151.997,-11.9659,0 0/1:44:14,30:14:449:30:1017:-78.5891,0,-27.4755 dDocent_Contig_1996 209 . N G 77.8076 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_1998 1 . N G 798.23 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=22;CIGAR=1X;DP=22;DPB=22;DPRA=0;EPP=50.7827;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=868;QR=0;RO=0;RPL=0;RPP=50.7827;RPPR=0;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:10:0,10:0:0:10:388:-35.2714,-3.0103,0 1/1:8:0,8:0:0:8:320:-29.1661,-2.40824,0 1/1:4:0,4:0:0:4:160:-14.7834,-1.20412,0 dDocent_Contig_1999 86 . C T 240.025 . AB=0.245614;ABP=35.049;AC=1;AF=0.166667;AN=6;AO=21;CIGAR=1X;DP=146;DPB=146;DPRA=0;EPP=48.6112;EPPR=274.444;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=712;QR=4108;RO=125;RPL=21;RPP=48.6112;RPPR=274.444;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=125;SRP=274.444;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:53:48,5:48:1601:5:170:0,-0.320033,-128.74 0/0:36:34,2:34:1089:2:68:0,-4.3792,-91.8432 0/1:57:43,14:43:1418:14:474:-25.8258,0,-110.749 dDocent_Contig_2000 38 . G A 1905.44 . AB=0.42236;ABP=11.4399;AC=3;AF=0.5;AN=6;AO=68;CIGAR=1X;DP=161;DPB=161;DPRA=0;EPP=150.67;EPPR=202.786;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.98913;PAO=0;PQA=0;PQR=0;PRO=0;QA=2708;QR=3624;RO=92;RPL=0;RPP=150.67;RPPR=202.786;RPR=68;RUN=1;SAF=68;SAP=150.67;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:60,10:60:2370:10:399:-14.787,0,-191.977 0/1:38:15,23:15:584:23:922:-71.8464,0,-41.4569 0/1:52:17,35:17:670:35:1387:-109.433,0,-44.9728 dDocent_Contig_2001 29 . T C 52.0939 . AB=0.130435;ABP=57.5803;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=148;DPB=148;DPRA=0.901961;EPP=16.0391;EPPR=311.359;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=228;QR=5606;RO=142;RPL=0;RPP=16.0391;RPPR=311.359;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=142;SRP=311.359;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:59:59,0:59:2336:0:0:0,-17.7608,-210.393 0/0:43:43,0:43:1706:0:0:0,-12.9443,-153.768 0/1:46:40,6:40:1564:6:228:-7.03329,0,-127.156 dDocent_Contig_2003 53 . G A 321.864 . AB=0.147239;ABP=179.193;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=163;DPB=163;DPRA=0;EPP=55.1256;EPPR=304.845;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=952;QR=5520;RO=139;RPL=24;RPP=55.1256;RPPR=304.845;RPR=0;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=139;SRP=304.845;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:41,7:41:1624:7:284:-11.4846,0,-131.943 0/1:62:55,7:55:2202:7:280:-6.9077,0,-179.691 0/1:53:43,10:43:1694:10:388:-19.3171,0,-136.731 dDocent_Contig_2004 36 . T C 39.8649 . AB=0.131579;ABP=47.8112;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=48;DPB=48;DPRA=1.9;EPP=13.8677;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=1723;RO=43;RPL=0;RPP=13.8677;RPPR=96.3836;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:392:0:0:0,-3.0103,-35.636 0/1:9:8,1:8:316:1:41:-1.3853,0,-26.0943 0/1:29:25,4:25:1015:4:157:-5.77655,0,-82.9118 dDocent_Contig_2005 31 . T A 49.6439 . AB=0.214286;ABP=12.937;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=76;DPB=76;DPRA=0.451613;EPP=9.52472;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=2894;RO=73;RPL=0;RPP=9.52472;RPPR=161.528;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:36:36,0:36:1426:0:0:0,-10.8371,-128.592 0/0:26:26,0:26:1048:0:0:0,-7.82678,-94.6095 0/1:14:11,3:11:420:3:118:-6.7883,0,-33.9282 dDocent_Contig_2006 107 . N G 216.613 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=9.4572;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=237;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:7:0,7:0:0:7:237:-21.6613,-2.10721,0 dDocent_Contig_2009 78 . G C 73.4715 . AB=0.129032;ABP=114.176;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=295;DPB=295;DPRA=0.920792;EPP=29.068;EPPR=617.537;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.978799;PAO=0;PQA=0;PQR=0;PRO=0;QA=406;QR=9370;RO=283;RPL=12;RPP=29.068;RPPR=617.537;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=283;SRP=617.537;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:93:81,12:81:2690:12:406:-8.87003,0,-214.361 0/0:90:90,0:90:2955:0:0:0,-27.0927,-266.196 0/0:112:112,0:112:3725:0:0:0,-33.7154,-335.476 dDocent_Contig_2010 200 . C A 954.901 . AB=0.607143;ABP=8.59409;AC=3;AF=0.5;AN=6;AO=34;CIGAR=1X;DP=56;DPB=56;DPRA=0;EPP=76.8404;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1298;QR=842;RO=22;RPL=34;RPP=76.8404;RPPR=50.7827;RPR=0;RUN=1;SAF=0;SAP=76.8404;SAR=34;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:5,10:5:190:10:374:-29.4942,0,-12.9513 0/1:14:3,11:3:116:11:421:-34.0283,0,-6.60328 0/1:27:14,13:14:536:13:503:-37.4904,0,-40.4563 dDocent_Contig_2012 118 . C A 93.9614 . AB=0.135922;ABP=121.598;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=103;DPB=103;DPRA=0;EPP=33.4109;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=487;QR=2967;RO=89;RPL=0;RPP=33.4109;RPPR=196.271;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=196.271;SRR=89;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:31,7:31:1005:7:243:-10.7697,0,-79.3079 0/1:29:26,3:26:882:3:105:-1.06629,0,-70.9606 0/1:36:32,4:32:1080:4:139:-2.01561,0,-86.6654 dDocent_Contig_2014 39 . G T 399.278 . AB=0.227273;ABP=59.8634;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X;DP=88;DPB=88;DPRA=0;EPP=46.4397;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=787;QR=2668;RO=68;RPL=0;RPP=46.4397;RPPR=150.67;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:27,4:27:1046:4:161:-5.54355,0,-85.1049 0/1:21:14,7:14:557:7:281:-19.3403,0,-44.1511 0/1:36:27,9:27:1065:9:345:-20.5668,0,-85.2998 dDocent_Contig_2015 10 . G A 173.998 . AB=0.192308;ABP=45.7716;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=81;DPB=81;DPRA=0;EPP=29.068;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=478;QR=2738;RO=69;RPL=0;RPP=29.068;RPPR=152.842;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:27,2:27:1071:2:80:0,-1.13829,-89.0927 0/1:30:25,5:25:990:5:198:-9.16618,0,-80.3679 0/1:22:17,5:17:677:5:200:-11.7564,0,-54.6384 dDocent_Contig_2016 11 . A C 2363.15 . AB=0.506329;ABP=3.06527;AC=3;AF=0.5;AN=6;AO=80;CIGAR=1X;DP=158;DPB=158;DPRA=0;EPP=176.728;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3206;QR=3051;RO=78;RPL=0;RPP=176.728;RPPR=172.385;RPR=80;RUN=1;SAF=80;SAP=176.728;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:25,23:25:956:23:922:-68.8375,0,-71.8855 0/1:35:19,16:19:743:16:621:-45.6865,0,-56.6586 0/1:75:34,41:34:1352:41:1663:-127.314,0,-99.3639 dDocent_Contig_2018 8 . C T 104.09 . AB=0.0487805;ABP=75.5163;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X2M;DP=131;DPB=131;DPRA=1.02326;EPP=13.8677;EPPR=223.021;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=57.7699;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.867257;PAO=0;PQA=0;PQR=0;PRO=0;QA=189;QR=4243;RO=113;RPL=0;RPP=13.8677;RPPR=248.387;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=110;SRP=223.021;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:43:39,1,0,3:39:1458:1,0,3:39,0,117:0,-8.53428,-127.122,-11.7402,-127.423,-130.629,-2.12362,-117.805,-121.011,-120.108 0|1:41:30,7,2,2:30:1129:7,2,2:260,76,81:-12.2329,0,-85.8636,-15.0307,-81.7369,-102.414,-14.5789,-81.2891,-96.3342,-101.966 0|0:47:44,0,3,0:44:1656:0,3,0:0,113,0:0,-13.2453,-147.74,-3.60944,-138.48,-137.577,-13.2453,-147.74,-138.48,-147.74 dDocent_Contig_2019 7 . C T 86.1336 . AB=0.307692;ABP=7.18621;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=2X;DP=45;DPB=45;DPRA=0.8125;EPP=11.6962;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=152;QR=1563;RO=41;RPL=0;RPP=11.6962;RPPR=92.0407;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:13:9,4:9:343:4:152:-10.1362,0,-27.3142 0|0:16:16,0:16:602:0:0:0,-4.81648,-54.5182 0|0:16:16,0:16:618:0:0:0,-4.81648,-55.9601 dDocent_Contig_2020 180 . C T 1932.62 . AB=0.575221;ABP=8.56389;AC=3;AF=0.5;AN=6;AO=65;CIGAR=1X;DP=113;DPB=113;DPRA=0;EPP=144.156;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2554;QR=1921;RO=48;RPL=65;RPP=144.156;RPPR=107.241;RPR=0;RUN=1;SAF=0;SAP=144.156;SAR=65;SRF=0;SRP=107.241;SRR=48;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:23,16:23:923:16:631:-45.3837,0,-71.6359 0/1:35:3,32:3:113:32:1259:-103.052,0,-0.00198043 0/1:39:22,17:22:885:17:664:-48.3493,0,-68.2173 dDocent_Contig_2021 116 . C T 33.8652 . AB=0.153846;ABP=30.0702;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=73;DPB=73;DPRA=1.10638;EPP=11.6962;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=141;QR=2376;RO=69;RPL=0;RPP=11.6962;RPPR=152.842;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=152.842;SRR=69;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1079:0:0:0,-9.33193,-97.4192 0/0:16:16,0:16:566:0:0:0,-4.81648,-51.2703 0/1:26:22,4:22:731:4:141:-5.21025,0,-58.27 dDocent_Contig_2022 15 . G A 1507 . AB=0.351515;ABP=34.6085;AC=3;AF=0.5;AN=6;AO=58;CIGAR=1X;DP=165;DPB=165;DPRA=0;EPP=128.956;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2277;QR=4256;RO=107;RPL=0;RPP=128.956;RPPR=235.358;RPR=58;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:37,27:37:1475:27:1061:-76.5152,0,-113.736 0/1:42:33,9:33:1326:9:359:-20.0298,0,-106.961 0/1:59:37,22:37:1455:22:857:-59.6776,0,-113.438 dDocent_Contig_2023 30 . T C 1654.9 . AB=0.359116;ABP=34.2147;AC=3;AF=0.5;AN=6;AO=65;CIGAR=1X;DP=181;DPB=181;DPRA=0;EPP=144.156;EPPR=254.901;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2495;QR=4471;RO=116;RPL=0;RPP=144.156;RPPR=254.901;RPR=65;RUN=1;SAF=65;SAP=144.156;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:68:45,23:45:1733:23:882:-59.2257,0,-135.74 0/1:63:46,17:46:1764:17:654:-40.2278,0,-140.034 0/1:50:25,25:25:974:25:959:-71.5591,0,-72.9075 dDocent_Contig_2024 89 . G C 156.773 . AB=0.3;ABP=13.4334;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=64;DPB=64;DPRA=0;EPP=29.068;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=409;QR=1742;RO=52;RPL=12;RPP=29.068;RPPR=115.927;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:11,7:11:383:7:236:-16.1516,0,-29.3864 0/1:12:10,2:10:329:2:70:-3.03504,0,-26.3168 0/0:34:31,3:31:1030:3:103:0,-0.625052,-83.3896 dDocent_Contig_2025 94 . C A 215.804 . AB=0.454545;ABP=3.20771;AC=6;AF=1;AN=6;AO=5;CIGAR=1X1M1X1M6X2I4X;DP=12;DPB=13.7143;DPRA=5.5;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=2.5;MQM=23.2;MQMR=0;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=190;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,0,1,2:0:0:0,1,2:0,34,78:-8.98554,-8.98554,-8.98554,-6.32557,-6.32557,-6.02454,-3.00168,-3.00168,0,-2.39962 1|1:8:0,3,2,3:0:0:3,2,3:111,75,112:-12.1697,-6.23871,-5.33562,-5.98582,0,-5.38376,-9.90424,-4.05785,-3.71865,-9.00115 1|1:1:0,0,1,0:0:0:0,1,0:0,39,0:-3.89142,-3.89142,-3.89142,-0.30103,-0.30103,0,-3.89142,-3.89142,-0.30103,-3.89142 dDocent_Contig_2026 7 . T C 361.276 . 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C G 459.17 . AB=0.272727;ABP=27.6861;AC=4;AF=0.666667;AN=6;AO=15;CIGAR=1M1I3M3D3M1X;DP=56;DPB=51.8182;DPRA=27.5;EPP=35.5824;EPPR=74.6689;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=575;QR=1278;RO=33;RPL=0;RPP=35.5824;RPPR=74.6689;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:1:0,1,0:0:0:1,0:39,0:-3.89656,-0.30103,0,-3.89656,-0.30103,-3.89656 0|1:17:12,4,1:12:460:4,1:151,39:-7.88019,0,-36.5438,-8.27944,-34.5415,-45.7546 0|1:38:21,3,14:21:818:3,14:115,536:-37.6616,-34.547,-100.879,0,-57.8007,-63.0217 dDocent_Contig_2031 119 . T A 2351.09 . 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C T 5433.04 . 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C T 192.934 . AB=0.4375;ABP=3.55317;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=39;DPB=39;DPRA=1.3913;EPP=18.2106;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=284;QR=1226;RO=32;RPL=0;RPP=18.2106;RPPR=72.4974;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:351:0:0:0,-2.70927,-31.9487 0/0:14:14,0:14:529:0:0:0,-4.21442,-47.9344 0/1:16:9,7:9:346:7:284:-21.1173,0,-26.6742 dDocent_Contig_2037 42 . A C 101.82 . AB=0.333333;ABP=6.62942;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=28;DPB=28;DPRA=0.576923;EPP=6.91895;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.6;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=924;RO=23;RPL=2;RPP=3.44459;RPPR=52.9542;RPR=3;RUN=1;SAF=4;SAP=6.91895;SAR=1;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:5,1:5:202:1:40:-2.1895,0,-16.7553 0/1:9:5,4:5:196:4:153:-11.4307,0,-15.3036 0/0:13:13,0:13:526:0:0:0,-3.91339,-47.687 dDocent_Contig_2038 7 . C T 80.5439 . AB=0.333333;ABP=5.9056;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=37;DPB=37;DPRA=0.96;EPP=11.6962;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=59.4848;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=1261;RO=33;RPL=0;RPP=11.6962;RPPR=74.6689;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:306:0:0:0,-2.40824,-27.9009 0/1:12:8,4:8:299:4:156:-9.87829,0,-23.6526 0/0:17:17,0:17:656:0:0:0,-5.11751,-59.3579 dDocent_Contig_2039 95 . C T 273.159 . AB=0.232877;ABP=48.2543;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=73;DPB=73;DPRA=0;EPP=39.9253;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=580;QR=1891;RO=56;RPL=17;RPP=39.9253;RPPR=124.613;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:32,6:32:1090:6:198:-6.70497,0,-86.9682 0/1:25:15,10:15:492:10:348:-24.1303,0,-37.0657 0/1:10:9,1:9:309:1:34:-0.388611,0,-25.1332 dDocent_Contig_2041 20 . C T 45.1479 . AB=0.16;ABP=28.1125;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=85;DPB=85;DPRA=0.833333;EPP=11.6962;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=150;QR=3216;RO=81;RPL=0;RPP=11.6962;RPPR=178.9;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:46:46,0:46:1824:0:0:0,-13.8474,-164.367 0/1:25:21,4:21:831:4:150:-6.33868,0,-67.5776 0/0:14:14,0:14:561:0:0:0,-4.21442,-50.8333 dDocent_Contig_2042 165 . A T 123.407 . AB=0.357143;ABP=5.49198;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=28;DPB=28;DPRA=2;EPP=13.8677;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=933;RO=23;RPL=5;RPP=13.8677;RPPR=52.9542;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:326:0:0:0,-2.40824,-29.7099 0/1:14:9,5:9:362:5:200:-14.1646,0,-28.7299 0/0:6:6,0:6:245:0:0:0,-1.80618,-22.4295 dDocent_Contig_2043 16 . A G 37.534 . AB=0.109375;ABP=87.8334;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=211;DPB=211;DPRA=0.870748;EPP=18.2106;EPPR=445.991;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=272;QR=8062;RO=204;RPL=0;RPP=18.2106;RPPR=445.991;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=204;SRP=445.991;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:82:82,0:82:3238:0:0:0,-24.6845,-291.5 0/0:65:65,0:65:2605:0:0:0,-19.5669,-234.581 0/1:64:57,7:57:2219:7:272:-5.57724,0,-180.622 dDocent_Contig_2044 12 . T A 246.38 . AB=0.185185;ABP=72.7387;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=124;DPB=124;DPRA=0;EPP=39.9253;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=59.6471;MQMR=52.7757;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=658;QR=4238;RO=107;RPL=0;RPP=39.9253;RPPR=235.358;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:43:41,2:41:1627:2:82:0,-5.16461,-135.844 0/1:29:22,7:22:868:7:282:-17.0227,0,-60.1597 0/1:52:44,8:44:1743:8:294:-11.1381,0,-135.423 dDocent_Contig_2045 17 . G A 64.6439 . AB=0.151515;ABP=37.8197;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=95;DPB=95;DPRA=1.06452;EPP=13.8677;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.977528;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=3499;RO=89;RPL=0;RPP=13.8677;RPPR=196.271;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:28,5:28:1097:5:195:-7.98727,0,-89.0732 0/0:22:21,0:21:806:0:0:0,-6.32163,-72.6647 0/0:40:40,0:40:1596:0:0:0,-12.0412,-143.871 dDocent_Contig_2046 45 . C T 79.8011 . 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AB=0.15873;ABP=66.7413;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X1M1X;DP=92;DPB=92;DPRA=1.08621;EPP=24.725;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=372;QR=3223;RO=82;RPL=0;RPP=24.725;RPPR=181.071;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:38:33,5:33:1292:5:187:-5.75286,0,-105.113 0|1:25:20,5:20:789:5:185:-9.48083,0,-63.8044 0|0:29:29,0:29:1142:0:0:0,-8.72987,-103.06 dDocent_Contig_2049 17 . C A 238.458 . AB=0.268293;ABP=22.1298;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=140;DPB=140;DPRA=0.828283;EPP=26.8965;EPPR=280.959;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=414;QR=5105;RO=128;RPL=0;RPP=26.8965;RPPR=280.959;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=128;SRP=280.959;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:29,11:29:1139:11:414:-25.3687,0,-90.5556 0/0:41:41,0:41:1643:0:0:0,-12.3422,-148.096 0/0:58:58,0:58:2323:0:0:0,-17.4597,-209.221 dDocent_Contig_2050 41 . G A 1162.16 . 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AB=0.811881;ABP=88.3427;AC=3;AF=0.5;AN=6;AO=82;CIGAR=1X;DP=101;DPB=101;DPRA=0;EPP=181.071;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3117;QR=771;RO=19;RPL=82;RPP=181.071;RPPR=44.2683;RPR=0;RUN=1;SAF=0;SAP=181.071;SAR=82;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:7,27:7:283:27:985:-78.7104,0,-15.6084 0/1:31:4,27:4:161:27:1034:-84.0335,0,-5.54297 0/1:36:8,28:8:327:28:1098:-88.2728,0,-18.963 dDocent_Contig_2053 98 . N A 157.496 . 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G A 38467.1 . AB=0.050303;ABP=2901.28;AC=3;AF=0.5;AN=6;AO=83;CIGAR=1X4M;DP=1650;DPB=1650;DPRA=0;EPP=183.243;EPPR=63.8115;GTI=0;LEN=1;MEANALT=17.6667;MQM=56.5301;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=0.698795;PAIREDR=0.178571;PAO=0;PQA=0;PQR=0;PRO=0;QA=3096;QR=1035;RO=28;RPL=0;RPP=183.243;RPPR=63.8115;RPR=83;RUN=1;SAF=83;SAP=183.243;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:592:9,9,41,21,402,40:9:341:9,41,21,402,40:356,1566,795,15585,1525:-1377.4,-1350.81,-1376.06,-1252.23,-1250.89,-1267.85,-1314.94,-1313.6,-1215.02,-1336.58,-99.9181,-98.5765,0,-62.7083,-6.86228,-1255.88,-1254.54,-1155.96,-1218.67,-3.64422,-1271.79 1|0:491:11,25,58,6,334,18:11:405:25,58,6,334,18:977,2256,234,12780,712:-1197.54,-1120.53,-1146.12,-1015.49,-968.285,-1031.15,-1181.62,-1134.41,-1029.37,-1212.93,-152.251,-105.041,0,-166.127,-84.8179,-1142.26,-1095.05,-990.011,-1156.14,-126.766,-1169.95 1|0:567:8,11,73,41,337,25:8:289:11,73,41,337,25:427,2801,1613,13099,859:-1277.29,-1244.61,-1264.88,-1052.67,-1041.17,-1054.27,-1147.02,-1135.52,-943.574,-1158.26,-203.449,-191.948,0,-94.3527,-125.585,-1211.06,-1199.56,-1007.61,-1101.96,-158.394,-1227.11 dDocent_Contig_2058 50 . G C 135.18 . AB=0.186047;ABP=39.8243;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=140;DPB=140;DPRA=0.886598;EPP=20.3821;EPPR=289.645;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=307;QR=5203;RO=132;RPL=8;RPP=20.3821;RPPR=289.645;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=132;SRP=289.645;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:35,8:35:1371:8:307:-15.0409,0,-110.707 0/0:51:51,0:51:2011:0:0:0,-15.3525,-181.186 0/0:46:46,0:46:1821:0:0:0,-13.8474,-164.102 dDocent_Contig_2059 89 . T C 492.865 . AB=0.37931;ABP=10.3484;AC=1;AF=0.166667;AN=6;AO=23;CIGAR=1X;DP=133;DPB=133;DPRA=0.885417;EPP=52.9542;EPPR=241.872;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=789;QR=3740;RO=110;RPL=23;RPP=52.9542;RPPR=241.872;RPR=0;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=110;SRP=241.872;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:36,22:36:1220:22:755:-50.8094,0,-92.6345 0/0:48:48,0:48:1669:0:0:0,-14.4494,-150.498 0/0:27:26,1:26:851:1:34:0,-4.7289,-73.4911 dDocent_Contig_2061 158 . G T 109.869 . AB=0.24;ABP=17.6895;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=56;DPB=56;DPRA=1.6129;EPP=16.0391;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.98;PAO=0;PQA=0;PQR=0;PRO=0;QA=222;QR=1820;RO=50;RPL=6;RPP=16.0391;RPPR=111.584;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=111.584;SRR=50;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5243 0/0:12:12,0:12:426:0:0:0,-3.61236,-38.669 0/1:25:19,6:19:714:6:222:-12.8108,0,-57.0645 dDocent_Contig_2062 15 . G A 76.2577 . AB=0.181818;ABP=32.0291;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=48;DPB=48;DPRA=1.1;EPP=16.0391;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=226;QR=1644;RO=42;RPL=0;RPP=16.0391;RPPR=94.2121;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:597:0:0:0,-4.51545,-54.0682 0/1:20:16,4:16:615:4:153:-8.11911,0,-49.655 0/1:13:11,2:11:432:2:73:-3.0158,0,-35.3174 dDocent_Contig_2063 63 . T C 565.155 . AB=0;ABP=0;AC=0;AF=0;AN=6;AO=6;CIGAR=1X2M1X;DP=213;DPB=213;DPRA=2.19048;EPP=16.0391;EPPR=391.704;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.988827;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=6895;RO=179;RPL=6;RPP=16.0391;RPPR=391.704;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=179;SRP=391.704;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:42:40,0,1:40:1521:0,1:0,8:0,-12.0412,-136.91,-11.782,-136.498,-136.197 0|0:92:83,6,0:83:3199:6,0:234,0:0,-5.73241,-266.605,-24.9855,-268.412,-287.645 0|0:79:56,0,23:56:2175:0,23:0,909:-58.3394,-75.1971,-253.903,0,-179.099,-172.175 dDocent_Contig_2064 31 . C T 191.554 . AB=0.272727;ABP=17.8158;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=47;DPB=47;DPRA=1.17857;EPP=22.5536;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=354;QR=1527;RO=38;RPL=0;RPP=22.5536;RPPR=85.5263;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:14,3:14:567:3:117:-5.7927,0,-46.2551 0/0:14:14,0:14:555:0:0:0,-4.21442,-50.2941 0/1:16:10,6:10:405:6:237:-16.8855,0,-31.9936 dDocent_Contig_2065 63 . T G 82.6694 . AB=0.206897;ABP=24.6501;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=38;DPB=38;DPRA=1.61111;EPP=16.0391;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.333333;PAIREDR=0.9375;PAO=0;PQA=0;PQR=0;PRO=0;QA=220;QR=1179;RO=32;RPL=6;RPP=16.0391;RPPR=72.4974;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:345:0:0:0,-2.70927,-31.4086 0/1:9:7,2:7:245:2:72:-4.12737,0,-19.68 0/1:20:16,4:16:589:4:148:-7.66137,0,-47.327 dDocent_Contig_2066 12 . C T 2044.77 . AB=0.530769;ABP=4.07933;AC=3;AF=0.5;AN=6;AO=69;CIGAR=1X;DP=130;DPB=130;DPRA=0;EPP=152.842;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2758;QR=2454;RO=61;RPL=0;RPP=152.842;RPPR=135.47;RPR=69;RUN=1;SAF=69;SAP=152.842;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:23,8:23:916:8:322:-20.0168,0,-73.4141 0/1:31:15,16:15:600:16:639:-48.5128,0,-45.0041 0/1:68:23,45:23:938:45:1797:-141.471,0,-64.2498 dDocent_Contig_2067 24 . T C 52.2421 . AB=0.153846;ABP=30.0702;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=56;DPB=56;DPRA=1.73333;EPP=11.6962;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=2056;RO=52;RPL=0;RPP=11.6962;RPPR=115.927;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:611:0:0:0,-4.81648,-55.3193 0/1:26:22,4:22:885:4:161:-7.04812,0,-72.1284 0/0:14:14,0:14:560:0:0:0,-4.21442,-50.7401 dDocent_Contig_2068 23 . G T 16746.5 . AB=0.728477;ABP=345.341;AC=3;AF=0.5;AN=6;AO=550;CIGAR=1X;DP=755;DPB=755;DPRA=0;EPP=746.665;EPPR=415.766;GTI=0;LEN=1;MEANALT=1.66667;MQM=55.5436;MQMR=59.9697;NS=3;NUMALT=1;ODDS=0;PAIRED=0.385455;PAIREDR=0.924242;PAO=0;PQA=0;PQR=0;PRO=0;QA=21855;QR=7750;RO=198;RPL=0;RPP=1197.32;RPPR=432.962;RPR=550;RUN=1;SAF=492;SAP=746.665;SAR=58;SRF=196;SRP=415.766;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:293:86,207:86:3332:207:8200:-622.19,0,-211.749 0/1:288:63,221:63:2482:221:8815:-690.504,0,-137.643 0/1:174:49,122:49:1936:122:4840:-367.474,0,-122.566 dDocent_Contig_2069 189 . T A 368.228 . AB=0.326531;ABP=15.8176;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=49;DPB=49;DPRA=0;EPP=37.7539;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=622;QR=1251;RO=33;RPL=16;RPP=37.7539;RPPR=74.6689;RPR=0;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=74.6689;SRR=33;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:7,4:7:246:4:158:-11.2893,0,-19.1668 0/1:19:13,6:13:499:6:227:-15.0723,0,-39.535 0/1:19:13,6:13:506:6:237:-15.9841,0,-40.1685 dDocent_Contig_2071 17 . A G 728.72 . AB=0.103093;ABP=135.739;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1M2X17M;DP=97;DPB=96.1;DPRA=0;EPP=24.725;EPPR=115.927;GTI=0;LEN=1;MEANALT=3.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=393;QR=1983;RO=52;RPL=0;RPP=24.725;RPPR=115.927;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:38:23,7,2,4:23:863:7,2,4:263,78,163:-14.6374,0,-68.6099,-15.1438,-64.3038,-85.2452,-8.09392,-57.2634,-72.3947,-77.6039 0|0:43:20,18,4,1:20:769:18,4,1:693,137,40:-50.8972,0,-57.7362,-45.8107,-52.0469,-107.736,-53.6217,-59.8587,-105.645,-116.454 0|1:16:9,0,0,5:9:351:0,0,5:0,0,190:-12.8602,-15.5695,-44.4246,-15.5695,-44.4246,-44.4246,0,-28.8478,-28.8478,-27.3427 dDocent_Contig_2073 20 . T C 412.522 . AB=0.333333;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1M1X3M;DP=34;DPB=39.8;DPRA=0.3;EPP=7.35324;EPPR=11.6962;GTI=0;LEN=1;MEANALT=2;MQM=18;MQMR=36;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=36;QR=157;RO=4;RPL=0;RPP=7.35324;RPPR=11.6962;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=4;SRP=11.6962;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:20:1,18,0:1:39:18,0:407,0:-28.4593,-2.088,0,-28.7603,-5.41854,-31.9759 0|0:8:3,5,0:3:118:5,0:114,0:-6.7004,0,-5.33921,-7.60349,-6.84436,-14.2007 0|1:6:0,4,2:0:0:4,2:96,36:-8.64766,-2.25255,-1.04843,-6.56527,0,-5.96321 dDocent_Contig_2074 7 . C A 42.7002 . AB=0.1875;ABP=16.582;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=41;DPB=41;DPRA=1.28;EPP=9.52472;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=1430;RO=38;RPL=0;RPP=9.52472;RPPR=85.5263;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:530:0:0:0,-4.21442,-48.0428 0/0:11:11,0:11:409:0:0:0,-3.31133,-37.156 0/1:16:13,3:13:491:3:117:-6.0939,0,-39.7137 dDocent_Contig_2075 67 . G A 2309.81 . AB=0.731481;ABP=53.2759;AC=3;AF=0.5;AN=6;AO=79;CIGAR=1X;DP=108;DPB=108;DPRA=0;EPP=174.557;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2979;QR=1129;RO=29;RPL=79;RPP=174.557;RPPR=65.983;RPR=0;RUN=1;SAF=79;SAP=174.557;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:4,29:4:157:29:1089:-88.3656,0,-4.5739 0/1:40:8,32:8:317:32:1231:-99.0432,0,-16.8551 0/1:35:17,18:17:655:18:659:-49.0946,0,-48.7506 dDocent_Contig_2076 18 . A G 965.009 . AB=0.193548;ABP=205.307;AC=3;AF=0.5;AN=6;AO=48;CIGAR=1X;DP=248;DPB=248;DPRA=0;EPP=107.241;EPPR=437.305;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1952;QR=7919;RO=200;RPL=0;RPP=107.241;RPPR=437.305;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=200;SRP=437.305;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:79:58,21:58:2298:21:851:-53.1201,0,-183.204 0/1:93:76,17:76:2995:17:695:-34.8814,0,-241.66 0/1:76:66,10:66:2626:10:406:-14.0223,0,-213.584 dDocent_Contig_2077 22 . G A 335.485 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=22.5536;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=59.3333;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=361;QR=0;RO=0;RPL=0;RPP=22.5536;RPPR=0;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:160:-14.7811,-1.20412,0 1/1:5:0,5:0:0:5:201:-18.4662,-1.50515,0 ./.:.:.:.:.:.:.:. dDocent_Contig_2078 144 . A G 1759.28 . AB=0.440559;ABP=7.3988;AC=3;AF=0.5;AN=6;AO=63;CIGAR=1X;DP=143;DPB=143;DPRA=0;EPP=139.813;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2484;QR=3104;RO=80;RPL=0;RPP=139.813;RPPR=176.728;RPR=63;RUN=1;SAF=0;SAP=139.813;SAR=63;SRF=0;SRP=176.728;SRR=80;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:24,25:24:906:25:980:-73.746,0,-67.09 0/1:44:17,27:17:649:27:1059:-82.3505,0,-45.4803 0/1:50:39,11:39:1549:11:445:-25.354,0,-124.598 dDocent_Contig_2079 133 . A T 334.747 . AB=0.375;ABP=8.43898;AC=1;AF=0.166667;AN=6;AO=18;CIGAR=1X;DP=104;DPB=104;DPRA=2.23684;EPP=42.0968;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=623;QR=2960;RO=86;RPL=0;RPP=42.0968;RPPR=189.757;RPR=18;RUN=1;SAF=0;SAP=42.0968;SAR=18;SRF=0;SRP=189.757;SRR=86;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:25,15:25:856:15:519:-34.9975,0,-65.314 0/0:19:19,0:19:651:0:0:0,-5.71957,-58.9119 0/0:45:42,3:42:1453:3:104:0,-3.84326,-121.364 dDocent_Contig_2080 166 . G T 219.625 . AB=0.22;ABP=37.059;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=29.068;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=482;QR=2682;RO=68;RPL=12;RPP=29.068;RPPR=150.67;RPR=0;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=150.67;SRR=68;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:29,1:29:1166:1:40:0,-5.03522,-101.223 0/1:28:21,7:21:832:7:281:-17.2331,0,-66.7664 0/1:22:18,4:18:684:4:161:-8.25224,0,-55.2482 dDocent_Contig_2081 55 . G A 4754.47 . AB=0.580882;ABP=10.7382;AC=4;AF=0.666667;AN=6;AO=152;CIGAR=1X;DP=213;DPB=213;DPRA=0;EPP=333.074;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.986842;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5938;QR=2400;RO=61;RPL=152;RPP=333.074;RPPR=135.47;RPR=0;RUN=1;SAF=152;SAP=333.074;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:77:4,73:4:164:73:2835:-240.143,-8.02941,0 0/1:63:15,48:15:591:48:1876:-150.094,0,-34.5665 0/1:73:42,31:42:1645:31:1227:-88.7338,0,-126.311 dDocent_Contig_2082 11 . G A 2934.1 . AB=0.126354;ABP=674.818;AC=0;AF=0;AN=6;AO=70;CIGAR=1X2M1X;DP=554;DPB=554;DPRA=0;EPP=155.013;EPPR=537.193;GTI=0;LEN=1;MEANALT=4.33333;MQM=58.8;MQMR=59.9797;NS=3;NUMALT=3;ODDS=1.11022e-16;PAIRED=0.914286;PAIREDR=0.99187;PAO=0;PQA=0;PQR=0;PRO=0;QA=2770;QR=9571;RO=246;RPL=0;RPP=155.013;RPPR=537.193;RPR=70;RUN=1;SAF=70;SAP=155.013;SAR=0;SRF=246;SRP=537.193;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:196:77,22,46,49:77:2980:22,46,49:872,1815,1931:-135.676,-87.0772,-325.21,-11.6752,-184.65,-242.581,0,-172.976,-97.5728,-230.005 0|0:125:63,20,11,22:63:2428:20,11,22:791,423,873:-52.9026,-7.34601,-200.678,-40.0449,-174.873,-236.08,0,-134.834,-167.528,-192.732 0|0:233:106,28,49,43:106:4163:28,49,43:1107,1933,1726:-110.318,-51.9829,-385.947,-0.58673,-252.729,-328.219,0,-252.155,-200.751,-329.454 dDocent_Contig_2083 14 . A T 174.826 . AB=0.116883;ABP=199.345;AC=1;AF=0.166667;AN=6;AO=20;CIGAR=1X;DP=347;DPB=347;DPRA=1.30729;EPP=46.4397;EPPR=713.082;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=56.5841;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.984709;PAO=0;PQA=0;PQR=0;PRO=0;QA=806;QR=12850;RO=327;RPL=0;RPP=46.4397;RPPR=713.082;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=327;SRP=713.082;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:96:96,0:96:3779:0:0:0,-28.8989,-338.06 0/0:97:95,2:95:3702:2:80:0,-21.6081,-321.646 0/1:154:136,18:136:5369:18:726:-19.3065,0,-414.345 dDocent_Contig_2084 78 . T C 248.471 . AB=0.2;ABP=73.366;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=118;DPB=118;DPRA=1.60714;EPP=42.0968;EPPR=220.158;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=609;QR=3259;RO=100;RPL=18;RPP=42.0968;RPPR=220.158;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:884:0:0:0,-8.42884,-79.8547 0/1:39:32,7:32:1049:7:231:-9.37137,0,-82.9658 0/1:51:40,11:40:1326:11:378:-18.9986,0,-104.281 dDocent_Contig_2085 1 . N G 76.8682 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 dDocent_Contig_2086 95 . C A 300.343 . AB=0.257576;ABP=36.701;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=114;DPB=114;DPRA=0.6875;EPP=39.9253;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=586;QR=3305;RO=97;RPL=17;RPP=39.9253;RPPR=213.643;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:21,13:21:695:13:451:-30.6866,0,-52.6234 0/1:32:28,4:28:947:4:135:-2.85062,0,-75.9053 0/0:48:48,0:48:1663:0:0:0,-14.4494,-149.961 dDocent_Contig_2087 8 . A G 590.895 . AB=0.367647;ABP=13.3567;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=57.2971;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=934;QR=1637;RO=43;RPL=0;RPP=57.2971;RPPR=96.3836;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:15,3:15:571:3:97:-3.629,0,-46.3131 0/1:23:14,9:14:535:9:339:-23.9409,0,-41.5701 0/1:27:14,13:14:531:13:498:-37.0391,0,-40.0046 dDocent_Contig_2088 10 . G T 300.207 . AB=0.111111;ABP=50.3001;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=2M1X2M1X;DP=97;DPB=97;DPRA=1.5;EPP=11.6962;EPPR=139.813;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=59.619;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=0.984127;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=2439;RO=63;RPL=0;RPP=11.6962;RPPR=139.813;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:37:21,2,4,0,7,3:21:811:2,4,0,7,3:77,151,0,267,114:-15.5782,-15.5767,-81.5816,-9.57538,-69.8588,-74.9772,-21.8998,-82.1837,-76.1813,-88.5062,0,-60.2853,-54.2832,-66.6077,-64.5005,-12.5549,-72.839,-66.8367,-79.1615,-57.2632,-78.2584 0|0:24:21,0,0,0,1,1:21:806:0,0,0,1,1:0,0,0,27,37:0,-6.32163,-72.1697,-6.32163,-72.1697,-72.1697,-6.32163,-72.1697,-72.1697,-72.1697,-4.18287,-70.0451,-70.0451,-70.0451,-69.744,-3.2352,-69.1429,-69.1429,-69.1429,-67.0185,-68.8419 0|1:36:21,8,0,4,3,0:21:822:8,0,4,3,0:297,0,162,117,0:-17.9654,0,-65.1741,-24.287,-67.5823,-91.8789,-10.9211,-54.2221,-78.5185,-77.3144,-14.6703,-57.9675,-82.2635,-68.9029,-81.3605,-24.287,-67.5823,-91.8789,-78.5185,-82.2635,-91.8789 dDocent_Contig_2089 69 . A G 2103.29 . AB=0.674797;ABP=35.653;AC=3;AF=0.5;AN=6;AO=83;CIGAR=1X;DP=123;DPB=123;DPRA=0;EPP=183.243;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=59.6386;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.987952;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2802;QR=1329;RO=40;RPL=83;RPP=183.243;RPPR=89.8692;RPR=0;RUN=1;SAF=83;SAP=183.243;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:10,22:10:311:22:731:-56.2398,0,-18.6615 0/1:29:13,16:13:438:16:546:-40.7344,0,-31.0143 0/1:62:17,45:17:580:45:1525:-118.878,0,-33.8592 dDocent_Contig_2090 16 . G A 68.2787 . AB=0.171429;ABP=35.8306;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=53;DPB=53;DPRA=0.972222;EPP=16.0391;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=224;QR=1881;RO=47;RPL=0;RPP=16.0391;RPPR=105.07;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:714:0:0:0,-5.41854,-64.5848 0/1:12:9,3:9:361:3:105:-6.17844,0,-29.2406 0/1:23:20,3:20:806:3:119:-4.17132,0,-65.9321 dDocent_Contig_2091 13 . C A 1814.65 . AB=0.442177;ABP=7.27939;AC=3;AF=0.5;AN=6;AO=65;CIGAR=1X;DP=147;DPB=147;DPRA=0;EPP=144.156;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2559;QR=3270;RO=82;RPL=0;RPP=144.156;RPPR=181.071;RPR=65;RUN=1;SAF=65;SAP=144.156;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:23,21:23:895:21:842:-62.847,0,-67.6014 0/1:54:27,27:27:1086:27:1038:-77.4498,0,-81.7725 0/1:49:32,17:32:1289:17:679:-46.6909,0,-101.523 dDocent_Contig_2093 41 . C G 181.99 . AB=0;ABP=0;AC=0;AF=0;AN=6;AO=2;CIGAR=2X3M1X1M1X3M1X;DP=93;DPB=93;DPRA=0.676471;EPP=7.35324;EPPR=172.385;GTI=0;LEN=1;MEANALT=3;MQM=29;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=3005;RO=78;RPL=0;RPP=7.35324;RPPR=172.385;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:34:33,0,0:33:1249:0,0:0,0:0,-9.93399,-112.287,-9.93399,-112.287,-112.287 0|0:23:19,2,0:19:743:2,0:78,0:0,-1.15229,-61.7776,-5.71957,-62.3797,-66.9137 0|0:36:26,0,9:26:1013:0,9:0,340:-20.0228,-27.8496,-111.117,0,-83.259,-80.5497 dDocent_Contig_2095 100 . N C 5954.26 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=172;CIGAR=8X2I2M;DP=176;DPB=210.8;DPRA=0;EPP=376.504;EPPR=0;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.0116279;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=6611;QR=0;RO=0;RPL=172;RPP=376.504;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=376.504;SAR=172;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:65:0,65:0:0:65:2493:-224.569,-19.567,0 1|1:75:0,73:0:0:73:2810:-252.724,-21.9752,0 1|1:36:0,34:0:0:34:1308:-117.656,-10.235,0 dDocent_Contig_2096 15 . T G 35.2811 . AB=0.142857;ABP=26.2761;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=64;DPB=64;DPRA=0.976744;EPP=9.52472;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=2453;RO=61;RPL=0;RPP=9.52472;RPPR=135.47;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:18,3:18:721:3:122:-5.05086,0,-58.8952 0/0:19:19,0:19:766:0:0:0,-5.71957,-69.2611 0/0:24:24,0:24:966:0:0:0,-7.22472,-87.2383 dDocent_Contig_2097 37 . C T 37.6977 . AB=0.133333;ABP=38.0434;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=86;DPB=86;DPRA=1.07143;EPP=11.6962;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.97561;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=3288;RO=82;RPL=0;RPP=11.6962;RPPR=181.071;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:26,4:26:1048:4:155:-5.29257,0,-85.5807 0/0:30:30,0:30:1189:0:0:0,-9.0309,-107.291 0/0:26:26,0:26:1051:0:0:0,-7.82678,-94.8795 dDocent_Contig_2098 47 . A C 100.346 . AB=0.176471;ABP=33.9218;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=123;DPB=123;DPRA=0.764045;EPP=16.0391;EPPR=257.073;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.982906;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=4681;RO=117;RPL=0;RPP=16.0391;RPPR=257.073;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=117;SRP=257.073;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:28,6:28:1119:6:238:-11.5575,0,-90.761 0/0:41:41,0:41:1639:0:0:0,-12.3422,-147.743 0/0:48:48,0:48:1923:0:0:0,-14.4494,-173.272 dDocent_Contig_2099 13 . T C 40774 . AB=0.0596825;ABP=2655.33;AC=6;AF=1;AN=6;AO=94;CIGAR=3X2M;DP=1575;DPB=1575;DPRA=0;EPP=166.009;EPPR=39.9253;GTI=0;LEN=1;MEANALT=11.3333;MQM=59.7447;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0.904255;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3678;QR=672;RO=17;RPL=0;RPP=207.129;RPPR=39.9253;RPR=94;RUN=1;SAF=89;SAP=166.009;SAR=5;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:517:7,91,319,27,35:7:277:91,319,27,35:3612,12564,1068,1408:-1289.26,-1006.14,-1001.54,-262.427,0,-189.196,-1203.48,-941.046,-197.334,-1218.15,-1175.33,-912.898,-169.186,-1110.24,-1187.59 1|1:394:3,68,264,20,12:3:116:68,264,20,12:2641,10328,782,481:-1030.42,-834.383,-823.441,-187.404,0,-117.46,-967.036,-779.62,-132.638,-970.543,-991.698,-804.282,-157.3,-936.934,-997.613 1|1:664:7,116,438,47,22:7:279:116,438,47,22:4624,17364,1828,884:-1763.23,-1399.15,-1387.21,-343.21,0,-234.336,-1615.32,-1272.1,-216.162,-1624.15,-1692.5,-1349.28,-293.341,-1565.45,-1708.85 dDocent_Contig_2100 1 . N G 76.1675 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=15.8;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=166;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:131:-6.38896,-1.20412,0 1/1:1:0,1:0:0:1:35:-0.899047,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_2103 98 . N T 220.967 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=18;CIGAR=2X;DP=18;DPB=25;DPRA=0;EPP=42.0968;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=14.6667;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=14;PQA=422;PQR=0;PRO=0;QA=652;QR=0;RO=0;RPL=18;RPP=42.0968;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=42.0968;SAR=18;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:8:0,8:0:0:8:296:-8.75062,-2.40824,0 1|1:5:0,5:0:0:5:173:-7.52584,-1.50515,0 1|1:5:0,5:0:0:5:183:-5.34299,-1.50515,0 dDocent_Contig_2105 24 . T A 389.743 . AB=0.216867;ABP=60.8029;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=119;DPB=119;DPRA=1.15278;EPP=42.0968;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=732;QR=4001;RO=101;RPL=0;RPP=42.0968;RPPR=222.329;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:32,3:32:1282:3:122:-0.836443,0,-105.111 0/0:36:36,0:36:1427:0:0:0,-10.8371,-128.682 0/1:48:33,15:33:1292:15:610:-40.7884,0,-102.093 dDocent_Contig_2107 43 . G T 5869.72 . AB=0.0552764;ABP=344.87;AC=0;AF=0;AN=6;AO=11;CIGAR=1M2D1X3M2X1M2X1M1X1M;DP=337;DPB=334.333;DPRA=0;EPP=26.8965;EPPR=118.251;GTI=0;LEN=1;MEANALT=7;MQM=6;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.947368;PAO=0;PQA=0;PQR=0;PRO=0;QA=66;QR=2170;RO=57;RPL=0;RPP=26.8965;RPPR=118.251;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:116:19,8,69,14:19:704:8,69,14:48,2599,529:-207.297,-212.88,-268.069,0,-57.5271,-36.8621,-169.653,-227.118,-14.2495,-223.041 0|0:138:26,0,78,24:26:1001:0,78,24:0,3020,911:-240.268,-248.095,-330.284,0,-82.1973,-58.717,-173.398,-255.588,-7.49681,-248.363 0|0:83:12,3,40,19:12:465:3,40,19:18,1551,723:-144.93,-148.496,-185.794,-21.0987,-59.2742,-47.2704,-89.2451,-127.405,0,-121.731 dDocent_Contig_2108 7 . C A 160.075 . AB=0.166667;ABP=66.7068;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1X;DP=207;DPB=207;DPRA=0;EPP=35.5824;EPPR=417.762;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=562;QR=7250;RO=191;RPL=0;RPP=35.5824;RPPR=417.762;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=191;SRP=417.762;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:51:50,1:50:1882:1:39:0,-11.456,-165.736 0/1:66:55,11:55:2064:11:415:-17.8315,0,-166.135 0/0:90:86,3:86:3304:3:108:0,-16.98,-287.46 dDocent_Contig_2109 10 . C T 126.548 . AB=0.24;ABP=17.6895;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=52;DPB=52;DPRA=1.35714;EPP=18.2106;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=276;QR=1815;RO=45;RPL=0;RPP=18.2106;RPPR=100.727;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:19,6:19:766:6:237:-14.1763,0,-61.7352 0/0:14:14,0:14:564:0:0:0,-4.21442,-51.1028 0/0:13:12,1:12:485:1:39:0,-0.0168255,-40.1047 dDocent_Contig_2110 60 . C G 32.1987 . AB=0.125;ABP=42.0968;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=102;DPB=102;DPRA=0.608696;EPP=13.8677;EPPR=211.472;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=3776;RO=96;RPL=5;RPP=13.8677;RPPR=211.472;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:46:46,0:46:1791:0:0:0,-13.8474,-161.406 0/1:32:27,4:27:1066:4:160:-5.04351,0,-86.4865 0/0:24:23,1:23:919:1:40:0,-3.22904,-79.018 dDocent_Contig_2111 46 . C A 163.184 . AB=0.0769231;ABP=43.4331;AC=0;AF=0;AN=6;AO=2;CIGAR=8M1X1M;DP=76;DPB=79.6;DPRA=0.896552;EPP=7.35324;EPPR=137.642;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=2458;RO=62;RPL=0;RPP=7.35324;RPPR=137.642;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:21:13,6,2,0:13:517:6,2,0:227,75,0:-14.6973,0,-40.78,-12.4682,-36.4458,-54.4459,-18.6107,-42.5861,-55.048,-61.1897 0|0:29:29,0,0,0:29:1143:0,0,0:0,0,0:0,-8.72987,-103.16,-8.72987,-103.16,-103.16,-8.72987,-103.16,-103.16,-103.16 0|0:26:20,0,4,2:20:798:0,4,2:0,138,82:-5.14384,-11.1644,-76.9115,0,-65.7124,-64.5083,-4.37472,-70.1418,-58.9432,-69.5398 dDocent_Contig_2112 156 . G T 1109.31 . AB=0.307692;ABP=53.1212;AC=3;AF=0.5;AN=6;AO=48;CIGAR=1X;DP=156;DPB=156;DPRA=0;EPP=107.241;EPPR=237.529;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1805;QR=3991;RO=108;RPL=0;RPP=107.241;RPPR=237.529;RPR=48;RUN=1;SAF=0;SAP=107.241;SAR=48;SRF=0;SRP=237.529;SRR=108;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:50,9:50:1796:9:329:-12.1817,0,-144.088 0/1:41:32,9:32:1239:9:343:-18.8805,0,-99.4499 0/1:56:26,30:26:956:30:1133:-85.3919,0,-69.4629 dDocent_Contig_2113 7 . C T 51.3363 . AB=0.147059;ABP=39.7976;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=123;DPB=123;DPRA=0.764045;EPP=13.8677;EPPR=259.244;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=187;QR=4509;RO=118;RPL=0;RPP=13.8677;RPPR=259.244;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=118;SRP=259.244;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:44:44,0:44:1679:0:0:0,-13.2453,-151.374 0/0:45:45,0:45:1705:0:0:0,-13.5463,-153.714 0/1:34:29,5:29:1125:5:187:-6.95754,0,-91.316 dDocent_Contig_2114 91 . C T 1735.23 . AB=0.62069;ABP=10.3484;AC=5;AF=0.833334;AN=6;AO=59;CIGAR=1X1M;DP=82;DPB=82;DPRA=0;EPP=131.127;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2037;QR=447;RO=13;RPL=59;RPP=131.127;RPPR=31.2394;RPR=0;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:28:7,0,21:7:240:0,21:0,724:-57.0521,-59.1593,-78.644,0,-19.8279,-13.5063 1|1:24:0,0,23:0:0:0,23:0,793:-71.3487,-71.3487,-71.3487,-6.92369,-6.92369,0 1|1:30:6,9,15:6:207:9,15:308,520:-48.645,-25.4518,-39.5592,-8.18108,0,-20.4839 dDocent_Contig_2115 62 . T A 4815.84 . AB=0.794872;ABP=150.281;AC=3;AF=0.5;AN=6;AO=155;CIGAR=1X;DP=195;DPB=195;DPRA=0;EPP=339.589;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6058;QR=1580;RO=40;RPL=155;RPP=339.589;RPPR=89.8692;RPR=0;RUN=1;SAF=155;SAP=339.589;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:13,30:13:506:30:1183:-93.8066,0,-32.9423 0/1:71:9,62:9:349:62:2417:-196.319,0,-10.3939 0/1:81:18,63:18:725:63:2458:-196.981,0,-41.1933 dDocent_Contig_2116 1 . N G 6745.6 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=216;CIGAR=1X;DP=216;DPB=216;DPRA=0;EPP=437.948;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=59.8426;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=0.0185185;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=7480;QR=0;RO=0;RPL=0;RPP=472.048;RPPR=0;RPR=216;RUN=1;SAF=4;SAP=437.948;SAR=212;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:45:0,45:0:0:45:1549:-139.689,-13.5464,0 1/1:46:0,46:0:0:46:1604:-144.65,-13.8474,0 1/1:125:0,125:0:0:125:4327:-389.619,-37.6288,0 dDocent_Contig_2117 19 . G C 1543.21 . AB=0.0506329;ABP=141.572;AC=0;AF=0;AN=6;AO=4;CIGAR=1X1M1X2M1X2M1X;DP=160;DPB=160;DPRA=0;EPP=11.6962;EPPR=76.8404;GTI=0;LEN=1;MEANALT=8;MQM=24;MQMR=60;NS=3;NUMALT=8;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=1301;RO=34;RPL=0;RPP=11.6962;RPPR=76.8404;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:79:16,4,5,9,4,7,10,3,21:16:608:4,5,9,4,7,10,3,21:161,193,337,153,254,300,119,830:-61.7965,-59.2212,-107.881,-54.893,-97.3648,-103.252,-39.009,-81.4831,-77.1552,-86.1662,-54.0557,-96.5285,-92.2008,-76.3187,-102.717,-45.8757,-88.349,-84.0212,-68.1388,-83.1848,-93.6342,-43.9572,-86.4286,-82.1009,-66.2189,-81.264,-73.0848,-90.8097,-56.8146,-99.2872,-94.9595,-79.0775,-94.1234,-85.9436,-84.0226,-105.777,0,-42.4806,-38.152,-22.2667,-37.3142,-29.1339,-27.2165,-40.0731,-43.5503 0|0:30:1,0,0,2,6,1,4,5,10:1:40:0,0,2,6,1,4,5,10:0,0,80,231,39,157,174,362:-42.6839,-42.9849,-46.2813,-42.9849,-46.2813,-46.2813,-36.3918,-39.6884,-39.6884,-39.0864,-24.0117,-27.3087,-27.3087,-20.7146,-25.5025,-39.778,-43.0744,-43.0744,-36.4814,-24.1014,-42.7734,-30.0671,-33.3639,-33.3639,-26.7702,-14.3888,-30.1567,-32.1598,-29.0015,-32.298,-32.298,-25.7049,-13.325,-29.0911,-19.3802,-30.7928,-15.6749,-18.9713,-18.9713,-12.3784,0,-15.7646,-6.05415,-4.99453,-15.961 0|0:51:17,0,1,3,1,0,7,3,19:17:653:0,1,3,1,0,7,3,19:0,33,114,38,0,236,112,750:-55.3633,-60.4808,-114.085,-58.593,-112.196,-111.895,-51.1318,-104.737,-102.848,-103.834,-57.364,-110.968,-109.08,-101.62,-110.667,-60.4808,-114.085,-112.196,-104.737,-110.968,-114.085,-41.368,-94.9696,-93.0812,-85.6216,-91.8531,-94.9696,-92.8624,-51.31,-104.915,-103.026,-95.5662,-101.798,-104.915,-85.7997,-104.012,0,-53.6181,-51.7304,-44.2687,-50.5012,-53.6181,-34.5052,-44.4469,-47.8985 dDocent_Contig_2118 1 . N G 71.2068 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:75:-7.11959,-0.60206,0 dDocent_Contig_2119 9 . T G 113.408 . AB=0.121951;ABP=155.702;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1M1D2M2X1M1D1M;DP=123;DPB=118.333;DPRA=0;EPP=35.5824;EPPR=220.158;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=566;QR=3835;RO=100;RPL=0;RPP=35.5824;RPPR=220.158;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:34:28,4,1:28:1086:4,1:150,39:-3.94473,0,-88.157,-9.15605,-86.1548,-98.1404 0|1:51:40,5,5:40:1533:5,5:188,187:-3.36348,0,-124.323,-0.0917295,-110.516,-124.413 0|1:38:32,6,0:32:1216:6,0:228,0:-9.44557,0,-98.2911,-19.0785,-100.097,-118.796 dDocent_Contig_2120 70 . G A 112.61 . AB=0.230769;ABP=19.3799;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X1M1X;DP=118;DPB=118;DPRA=1.18571;EPP=24.725;EPPR=235.358;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=375;QR=3979;RO=107;RPL=10;RPP=24.725;RPPR=235.358;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:26:20,6:20:744:6:225:-12.7839,0,-59.4619 0|0:35:35,0:35:1316:0:0:0,-10.536,-118.727 0|0:57:52,4:52:1919:4:150:0,-3.13952,-159.16 dDocent_Contig_2122 13 . C T 7396.01 . AB=0.793333;ABP=227.222;AC=3;AF=0.5;AN=6;AO=238;CIGAR=1X;DP=300;DPB=300;DPRA=0;EPP=519.821;EPPR=133.299;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.533333;PAO=0;PQA=0;PQR=0;PRO=0;QA=9276;QR=2339;RO=60;RPL=0;RPP=519.821;RPPR=133.299;RPR=238;RUN=1;SAF=238;SAP=519.821;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:86:8,78:8:313:78:3012:-245.326,0,-2.64486 0/1:86:25,61:25:962:61:2378:-188.318,0,-60.9908 0/1:128:27,99:27:1064:99:3886:-311.448,0,-57.7189 dDocent_Contig_2123 42 . T C 559.601 . AB=0.42;ABP=5.78978;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=48.6112;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.965517;PAO=0;PQA=0;PQR=0;PRO=0;QA=838;QR=1146;RO=29;RPL=0;RPP=48.6112;RPPR=65.983;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:16,9:16:636:9:350:-24.3312,0,-50.051 0/1:8:2,6:2:79:6:243:-19.8397,0,-5.089 0/1:17:11,6:11:431:6:245:-17.312,0,-34.0225 dDocent_Contig_2124 143 . C A 128.353 . AB=0.25;ABP=16.0391;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=51;DPB=51;DPRA=1.77778;EPP=16.0391;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=1717;RO=45;RPL=0;RPP=16.0391;RPPR=100.727;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=100.727;SRR=45;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:442:0:0:0,-3.31133,-40.1352 0/0:16:16,0:16:552:0:0:0,-4.81648,-49.9735 0/1:24:18,6:18:723:6:239:-14.6592,0,-58.1712 dDocent_Contig_2125 12 . T C 30931.2 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=936;CIGAR=1X;DP=954;DPB=954;DPRA=0;EPP=150.336;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.358974;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=35066;QR=674;RO=18;RPL=0;RPP=2035.51;RPPR=42.0968;RPR=936;RUN=1;SAF=594;SAP=150.336;SAR=342;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:342:5,337:5:185:337:12717:-1126.87,-85.9427,0 1/1:509:10,499:10:371:499:18591:-1638.46,-119.486,0 1/1:103:3,100:3:118:100:3758:-327.31,-20.0034,0 dDocent_Contig_2126 55 . C T 153.192 . AB=0.195122;ABP=36.112;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=115;DPB=115;DPRA=1.10811;EPP=20.3821;EPPR=233.186;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=320;QR=4167;RO=106;RPL=8;RPP=20.3821;RPPR=233.186;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:32,8:32:1274:8:320:-16.8421,0,-102.618 0/0:36:36,0:36:1378:0:0:0,-10.8371,-124.271 0/0:38:38,0:38:1515:0:0:0,-11.4391,-136.592 dDocent_Contig_2127 92 . G T 67.6984 . AB=0.208333;ABP=20.744;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=96;DPB=96;DPRA=0.566667;EPP=8.80089;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=50.8333;MQMR=58.9222;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.788889;PAO=0;PQA=0;PQR=0;PRO=0;QA=209;QR=3033;RO=90;RPL=5;RPP=8.80089;RPPR=198.443;RPR=1;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:26,1:26:896:1:37:0,-7.628,-79.9993 0/1:24:19,5:19:620:5:172:-8.59375,0,-46.8005 0/0:45:45,0:45:1517:0:0:0,-13.5463,-136.818 dDocent_Contig_2128 22 . A G 107.596 . AB=0.294118;ABP=9.26925;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=51;DPB=51;DPRA=1;EPP=13.8677;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=44.8;MQMR=57.3478;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=0.891304;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=1822;RO=46;RPL=0;RPP=13.8677;RPPR=102.898;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:12,5:12:484:5:197:-12.2824,0,-36.7986 0/0:17:17,0:17:667:0:0:0,-5.11751,-59.3561 0/0:17:17,0:17:671:0:0:0,-5.11751,-60.5316 dDocent_Contig_2129 98 . N A 103.572 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=112;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:112:-10.357,-1.20412,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_2130 36 . A G 133.457 . AB=0.163265;ABP=51.2702;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=96;DPB=96;DPRA=2.08511;EPP=20.3821;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=325;QR=3498;RO=88;RPL=0;RPP=20.3821;RPPR=194.1;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:41,8:41:1642:8:325:-14.8686,0,-133.258 0/0:31:31,0:31:1224:0:0:0,-9.33193,-110.435 0/0:16:16,0:16:632:0:0:0,-4.81648,-57.2131 dDocent_Contig_2131 22 . T A 33.3327 . AB=0.108696;ABP=125.368;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=127;DPB=127;DPRA=1.31429;EPP=24.725;EPPR=257.073;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=375;QR=4668;RO=117;RPL=0;RPP=24.725;RPPR=257.073;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=117;SRP=257.073;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:42,5:42:1658:5:178:-2.21708,0,-135.301 0/1:45:40,5:40:1609:5:197:-4.55856,0,-131.498 0/0:35:35,0:35:1401:0:0:0,-10.536,-126.344 dDocent_Contig_2132 68 . A G 141.617 . AB=0.214286;ABP=22.8638;AC=2;AF=0.333334;AN=6;AO=6;CIGAR=3X2M;DP=55;DPB=55;DPRA=2.8;EPP=16.0391;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=1776;RO=46;RPL=6;RPP=16.0391;RPPR=102.898;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:28:22,0,6:22:848:0,6:0,231:-12.7289,-19.3516,-88.983,0,-70.0162,-68.21 0|1:17:14,3,0:14:542:3,0:108,0:-4.9555,0,-44.0061,-9.16992,-44.9092,-53.7146 0|0:10:10,0,0:10:386:0,0:0,0:0,-3.0103,-35.0944,-3.0103,-35.0944,-35.0944 dDocent_Contig_2133 79 . G C 947.671 . AB=0.291391;ABP=60.0869;AC=2;AF=0.333333;AN=6;AO=48;CIGAR=1X;DP=205;DPB=205;DPRA=0;EPP=107.241;EPPR=343.931;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1736;QR=5723;RO=157;RPL=48;RPP=107.241;RPPR=343.931;RPR=0;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=157;SRP=343.931;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:54:50,4:50:1796:4:146:0,-2.75791,-148.402 0/1:56:33,23:33:1214:23:823:-57.5315,0,-92.7081 0/1:95:74,21:74:2713:21:767:-40.7585,0,-215.801 dDocent_Contig_2134 85 . C A 121.66 . AB=0.25;ABP=18.2106;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=76;DPB=76;DPRA=1.16667;EPP=18.2106;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=2358;RO=69;RPL=7;RPP=18.2106;RPPR=152.842;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:21,7:21:714:7:242:-13.6889,0,-56.1487 0/0:35:35,0:35:1209:0:0:0,-10.536,-109.116 0/0:13:13,0:13:435:0:0:0,-3.91339,-39.4714 dDocent_Contig_2135 27 . T C 111.664 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:41:-3.74612,-0.30103,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:82:-7.11762,-0.60206,0 dDocent_Contig_2139 13 . C A 60.1169 . AB=0.214286;ABP=12.937;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X1M1X;DP=48;DPB=48;DPRA=0;EPP=9.52472;EPPR=79.2345;GTI=0;LEN=1;MEANALT=1;MQM=23;MQMR=48.9744;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=0;PAIREDR=0.589744;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1554;RO=39;RPL=0;RPP=9.52472;RPPR=87.6977;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=38;SRP=79.2345;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:21:16,0,4:16:637:0,4:0,149:-7.24799,-12.0645,-52.7873,0,-40.6818,-39.4777 0|1:14:11,3,0:11:436:3,0:121,0:-2.20289,0,-34.7659,-5.51422,-35.669,-40.9196 0|0:13:12,0,1:12:481:0,1:0,40:-0.0351181,-3.64748,-39.3616,0,-36.1066,-35.8056 dDocent_Contig_2140 48 . G T 37.6051 . AB=0.166667;ABP=20.3821;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X3M1X;DP=57;DPB=57;DPRA=0.923077;EPP=9.52472;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=1987;RO=54;RPL=3;RPP=9.52472;RPPR=120.27;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:26:26,0:26:960:0:0:0,-7.82678,-86.7127 0|1:18:15,3:15:552:3:118:-5.58435,0,-44.5967 0|0:13:13,0:13:475:0:0:0,-3.91339,-43.0826 dDocent_Contig_2142 183 . G A 341.038 . AB=0.235294;ABP=44.396;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X;DP=174;DPB=174;DPRA=1.28302;EPP=37.7539;EPPR=346.103;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=623;QR=6309;RO=158;RPL=16;RPP=37.7539;RPPR=346.103;RPR=0;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=346.103;SRR=158;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:43:43,0:43:1724:0:0:0,-12.9443,-155.375 0/1:68:52,16:52:2071:16:623:-35.9277,0,-166.108 0/0:63:63,0:63:2514:0:0:0,-18.9649,-226.388 dDocent_Contig_2143 139 . C A 148.985 . AB=0.214286;ABP=42.7172;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=89;DPB=89;DPRA=0;EPP=31.2394;EPPR=4.83891;GTI=0;LEN=1;MEANALT=1;MQM=58.7692;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.0769231;PAIREDR=0.921053;PAO=0;PQA=0;PQR=0;PRO=0;QA=420;QR=2795;RO=76;RPL=0;RPP=31.2394;RPPR=4.83891;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=168.042;SRR=76;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:26,8:26:968:8:255:-13.0227,0,-77.1783 0/0:33:32,1:32:1152:1:35:0,-6.43536,-100.457 0/1:22:18,4:18:675:4:130:-5.39864,0,-54.4379 dDocent_Contig_2145 16 . G A 79.1743 . AB=0.162162;ABP=39.6906;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=112;DPB=112;DPRA=0.986667;EPP=16.0391;EPPR=233.186;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=228;QR=4171;RO=106;RPL=0;RPP=16.0391;RPPR=233.186;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:30,0:30:1143:0:0:0,-9.0309,-103.144 0/1:37:31,6:31:1238:6:228:-9.74134,0,-100.557 0/0:45:45,0:45:1790:0:0:0,-13.5463,-161.319 dDocent_Contig_2147 37 . G A 278.125 . AB=0.333333;ABP=11.6962;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=36;DPB=36;DPRA=0;EPP=29.068;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=469;QR=919;RO=24;RPL=0;RPP=29.068;RPPR=55.1256;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:9,2:9:325:2:77:-3.99781,0,-26.2772 0/1:16:7,9:7:277:9:353:-27.3145,0,-20.4831 0/1:9:8,1:8:317:1:39:-1.18729,0,-26.1868 dDocent_Contig_2151 9 . G A 16059.9 . AB=0.05;ABP=354.789;AC=0;AF=0;AN=6;AO=10;CIGAR=1X3M1X3M1X5M;DP=685;DPB=683.571;DPRA=0;EPP=24.725;EPPR=74.6689;GTI=0;LEN=1;MEANALT=10;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=390;QR=1288;RO=33;RPL=0;RPP=24.725;RPPR=74.6689;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:205:5,0,6,21,156,4:5:196:0,6,21,156,4:0,231,812,6064,161:-547.323,-548.829,-564.947,-529.864,-545.982,-544.176,-482.142,-498.26,-479.296,-491.939,-50.567,-66.6858,-47.7215,0,-19.7251,-535.559,-551.678,-532.713,-484.991,-53.4154,-550.474 0|0:280:8,0,23,13,197,23:8:313:0,23,13,197,23:0,865,496,7670,920:-677.962,-680.37,-706.106,-609.512,-635.248,-628.324,-639.679,-665.415,-594.557,-661.502,-50.0525,-75.7889,-4.93321,-35.0982,-16.486,-604.586,-630.322,-559.464,-589.631,0,-623.398 0|0:200:20,10,5,11,121,19:20:779:10,5,11,121,19:390,158,437,4768,752:-386.227,-360.19,-421.201,-379.548,-411.512,-442.064,-356.269,-388.233,-407.591,-416.98,0,-31.9649,-51.3262,-28.0436,-27.5988,-330.363,-362.327,-381.685,-358.406,-2.13608,-388.665 dDocent_Contig_2153 124 . T C 137.982 . AB=0.171429;ABP=68.6508;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=94;DPB=94;DPRA=1.45833;EPP=29.068;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=419;QR=2635;RO=82;RPL=0;RPP=29.068;RPPR=181.071;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=181.071;SRR=82;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:742:0:0:0,-7.22472,-67.0692 0/1:24:19,5:19:630:5:174:-8.77723,0,-49.7882 0/1:46:39,7:39:1263:7:245:-8.54385,0,-100.109 dDocent_Contig_2154 13 . G C 3537.78 . AB=0.398204;ABP=33.0728;AC=3;AF=0.5;AN=6;AO=133;CIGAR=1X;DP=334;DPB=334;DPRA=0;EPP=291.816;EPPR=439.476;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5101;QR=7643;RO=201;RPL=0;RPP=291.816;RPPR=439.476;RPR=133;RUN=1;SAF=133;SAP=291.816;SAR=0;SRF=201;SRP=439.476;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:125:73,52:73:2783:52:2003:-142.872,0,-213.028 0/1:89:52,37:52:1953:37:1404:-99.8465,0,-149.228 0/1:120:76,44:76:2907:44:1694:-116.582,0,-225.674 dDocent_Contig_2155 83 . C A 1371.96 . AB=0.626263;ABP=16.7191;AC=3;AF=0.5;AN=6;AO=62;CIGAR=1X;DP=99;DPB=99;DPRA=0;EPP=137.642;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1895;QR=1206;RO=37;RPL=62;RPP=137.642;RPPR=83.3548;RPR=0;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:18,20:18:593:20:587:-41.6753,0,-42.2446 0/1:27:3,24:3:97:24:743:-59.0377,0,-0.923399 0/1:34:16,18:16:516:18:565:-40.9176,0,-36.5137 dDocent_Contig_2157 9 . G A 129.021 . AB=0.152778;ABP=78.4086;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=98;DPB=98;DPRA=1.38462;EPP=26.8965;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.908046;PAO=0;PQA=0;PQR=0;PRO=0;QA=415;QR=3250;RO=87;RPL=0;RPP=26.8965;RPPR=191.928;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:30,7:30:1102:7:273:-13.7999,0,-88.3428 0/0:26:26,0:26:991:0:0:0,-7.82678,-89.5002 0/1:35:31,4:31:1157:4:142:-2.58929,0,-93.8873 dDocent_Contig_2158 10 . G C 271.118 . AB=0.149254;ABP=146.198;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X;DP=134;DPB=134;DPRA=0;EPP=46.4397;EPPR=250.558;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=798;QR=4429;RO=114;RPL=0;RPP=46.4397;RPPR=250.558;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:47,12:47:1845:12:486:-26.3307,0,-148.506 0/1:40:36,4:36:1361:4:157:-2.46669,0,-110.705 0/1:35:31,4:31:1223:4:155:-3.78841,0,-99.8022 dDocent_Contig_2159 7 . C T 115.302 . AB=0.08;ABP=41.3151;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=3X;DP=64;DPB=64;DPRA=1.28205;EPP=7.35324;EPPR=99.951;GTI=0;LEN=1;MEANALT=2;MQM=48.5;MQMR=57.8571;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.875;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=2113;RO=56;RPL=0;RPP=7.35324;RPPR=124.613;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=53;SRP=99.951;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:28:28,0,0:28:1046:0,0:0,0:0,-8.42884,-92.5715,-8.42884,-92.5715,-92.5715 0|1:25:17,6,2:17:645:6,2:228,77:-13.3541,0,-50.6603,-12.2186,-46.2143,-64.0875 0|0:11:11,0,0:11:422:0,0:0,0:0,-3.31133,-38.3333,-3.31133,-38.3333,-38.3333 dDocent_Contig_2161 33 . T C 514.225 . AB=0.28;ABP=34.5401;AC=1;AF=0.166667;AN=6;AO=21;CIGAR=1X;DP=196;DPB=196;DPRA=1.23967;EPP=48.6112;EPPR=383.018;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=839;QR=6844;RO=175;RPL=0;RPP=48.6112;RPPR=383.018;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=175;SRP=383.018;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:68:68,0:68:2668:0:0:0,-20.47,-240.256 0/0:53:53,0:53:2039:0:0:0,-15.9546,-183.71 0/1:75:54,21:54:2137:21:839:-53.2464,0,-169.932 dDocent_Contig_2162 98 . N C 172.32 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=178;QR=0;RO=0;RPL=8;RPP=20.3821;RPPR=0;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:65:-6.17329,-0.60206,0 1/1:4:0,4:0:0:4:61:-5.64208,-1.20412,0 1/1:2:0,2:0:0:2:52:-4.93868,-0.60206,0 dDocent_Contig_2163 25 . G A 111.206 . AB=0.222222;ABP=27.1378;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=116;DPB=116;DPRA=0.848837;EPP=3.25157;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=52;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.111111;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=303;QR=4212;RO=107;RPL=0;RPP=22.5536;RPPR=235.358;RPR=9;RUN=1;SAF=5;SAP=3.25157;SAR=4;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:43:43,0:43:1698:0:0:0,-12.9443,-153.047 0/1:36:28,8:28:1075:8:262:-12.9445,0,-86.203 0/0:37:36,1:36:1439:1:41:0,-7.04354,-125.656 dDocent_Contig_2164 53 . G A 1302.05 . AB=0.378788;ABP=19.8557;AC=3;AF=0.5;AN=6;AO=50;CIGAR=1X;DP=132;DPB=132;DPRA=0;EPP=111.584;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1939;QR=3117;RO=82;RPL=50;RPP=111.584;RPPR=181.071;RPR=0;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:21,19:21:798:19:749:-55.6889,0,-60.0848 0/1:67:44,23:44:1689:23:900:-61.1333,0,-132.081 0/1:25:17,8:17:630:8:290:-18.9055,0,-49.4888 dDocent_Contig_2165 23 . C A 53.1598 . AB=0.147059;ABP=39.7976;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=109;DPB=109;DPRA=0.906667;EPP=13.8677;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=189;QR=4128;RO=104;RPL=0;RPP=13.8677;RPPR=228.843;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:30,0:30:1181:0:0:0,-9.0309,-106.571 0/0:45:45,0:45:1776:0:0:0,-13.5463,-160.055 0/1:34:29,5:29:1171:5:189:-7.13989,0,-95.4325 dDocent_Contig_2167 31 . G T 121.147 . AB=0.214286;ABP=22.8638;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=88;DPB=88;DPRA=0;EPP=22.5536;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=360;QR=3101;RO=79;RPL=0;RPP=22.5536;RPPR=174.557;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:22,6:22:850:6:241:-13.6375,0,-68.3835 0/0:28:26,2:26:1025:2:78:0,-1.02554,-85.1481 0/0:32:31,1:31:1226:1:41:0,-5.53839,-106.523 dDocent_Contig_2168 98 . N C 61.7437 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=65;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:65:-6.17329,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_2169 108 . C A 1642.95 . AB=0.337449;ABP=58.7805;AC=3;AF=0.5;AN=6;AO=82;CIGAR=1X2M1X;DP=243;DPB=243;DPRA=0;EPP=181.071;EPPR=350.446;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2687;QR=5116;RO=160;RPL=0;RPP=181.071;RPPR=350.446;RPR=82;RUN=1;SAF=0;SAP=181.071;SAR=82;SRF=0;SRP=350.446;SRR=160;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:99:64,34:64:2010:34:1127:-72.1515,0,-151.594 0|1:77:60,17:60:1936:17:576:-28.9826,0,-151.337 0|1:67:36,31:36:1170:31:984:-68.6839,0,-85.4258 dDocent_Contig_2170 107 . N C 88.0379 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=9;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=323;QR=0;RO=0;RPL=0;RPP=24.725;RPPR=0;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:35:-0.899047,-0.30103,0 1/1:6:0,6:0:0:6:183:-4.89108,-1.80618,0 1/1:3:0,3:0:0:3:105:-2.51733,-0.90309,0 dDocent_Contig_2171 132 . G A 353.435 . AB=0.285714;ABP=22.5536;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X1M1X1M;DP=130;DPB=130;DPRA=1.36111;EPP=33.4109;EPPR=224.5;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=445;QR=3789;RO=102;RPL=0;RPP=33.4109;RPPR=224.5;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=224.5;SRR=102;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:45:37,0,0,8:37:1356:0,0,8:0,0,288:-12.7193,-23.8574,-134.684,-23.8574,-134.684,-134.684,0,-111.188,-111.188,-108.78 0|1:49:32,14,0,2:32:1190:14,0,2:445,0,74:-26.147,0,-93.1866,-35.78,-97.401,-133.206,-29.7205,-91.3475,-127.152,-126.55 0|0:36:33,0,2,1:33:1243:0,2,1:0,81,36:0,-9.93399,-111.779,-3.22504,-105.098,-104.496,-7.01147,-108.842,-102.161,-108.541 dDocent_Contig_2173 14 . G A 4487.87 . AB=0.243176;ABP=464.774;AC=3;AF=0.5;AN=6;AO=196;CIGAR=1X;DP=806;DPB=806;DPRA=0;EPP=428.619;EPPR=1327.61;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.998361;PAO=0;PQA=0;PQR=0;PRO=0;QA=7739;QR=23763;RO=610;RPL=0;RPP=428.619;RPPR=1327.61;RPR=196;RUN=1;SAF=196;SAP=428.619;SAR=0;SRF=610;SRP=1327.61;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:256:199,57:199:7724:57:2219:-122.829,0,-617.786 0/1:287:220,67:220:8541:67:2650:-152.245,0,-681.905 0/1:263:191,72:191:7498:72:2870:-179.236,0,-595.317 dDocent_Contig_2174 98 . N A 65.5375 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_2175 10 . A C 2852.79 . AB=0.591195;ABP=14.4959;AC=3;AF=0.5;AN=6;AO=94;CIGAR=1X;DP=159;DPB=159;DPRA=0;EPP=207.129;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3754;QR=2551;RO=65;RPL=0;RPP=207.129;RPPR=144.156;RPR=94;RUN=1;SAF=94;SAP=207.129;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:11,29:11:398:29:1152:-91.9164,0,-24.1088 0/1:33:21,12:21:847:12:479:-33.5252,0,-66.6092 0/1:86:33,53:33:1306:53:2123:-165.36,0,-91.9162 dDocent_Contig_2176 1 . N G 295.259 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=58.25;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=317;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:196:-18.0154,-1.50515,0 ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:121:-11.2092,-0.90309,0 dDocent_Contig_2177 23 . T A 4112.09 . AB=0.0701754;ABP=94.4788;AC=0;AF=0;AN=6;AO=4;CIGAR=1X2M1X3M1X;DP=189;DPB=189;DPRA=0;EPP=11.6962;EPPR=109.412;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=1904;RO=49;RPL=0;RPP=11.6962;RPPR=109.412;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:57:18,0,37:18:706:0,37:0,1450:-113.96,-119.379,-177.443,0,-58.2078,-47.0697 0|0:57:24,4,28:24:929:4,28:160,1099:-83.181,-77.2238,-152.328,0,-63.1484,-67.9026 0|0:75:7,0,68:7:269:0,68:0,2688:-219.462,-221.569,-243.648,0,-22.4645,-1.99445 dDocent_Contig_2178 20 . C A 34.508 . AB=0.109756;ABP=111.478;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X1M1X1M1X;DP=206;DPB=206;DPRA=1.13492;EPP=33.4109;EPPR=415.59;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=514;QR=7439;RO=190;RPL=0;RPP=33.4109;RPPR=415.59;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=190;SRP=415.59;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:61:56,5:56:2171:5:185:0,-1.35281,-178.582 0|0:63:61,0:61:2395:0:0:0,-18.3628,-215.624 0|1:82:73,9:73:2873:9:329:-5.27449,0,-234.015 dDocent_Contig_2180 8 . C G 1183.72 . AB=0.118421;ABP=99.1265;AC=0;AF=0;AN=6;AO=9;CIGAR=2M1X2M1D3X3M;DP=76;DPB=46.9167;DPRA=0;EPP=22.5536;EPPR=42.0968;GTI=0;LEN=1;MEANALT=3.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=325;QR=682;RO=18;RPL=0;RPP=22.5536;RPPR=42.0968;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:17:7,1,3,5:7:270:1,3,5:39,112,181:-12.6477,-11.5469,-33.4257,-5.58373,-24.5573,-26.861,0,-18.9693,-13.009,-20.6706 0|0:32:11,1,4,15:11:412:1,4,15:36,151,519:-38.8364,-39.21,-72.657,-29.7662,-60.5795,-62.3128,0,-30.8031,-21.3627,-29.2241 0|0:27:0,3,2,22:0:0:3,2,22:116,62,772:-72.3946,-62.862,-61.9589,-67.421,-57.8884,-66.8189,-9.57411,0,-4.62774,-2.95145 dDocent_Contig_2181 92 . A T 29165.5 . AB=0.773668;ABP=1040.59;AC=6;AF=1;AN=6;AO=1234;CIGAR=1M1I2M1X;DP=1595;DPB=1961.25;DPRA=0;EPP=2682.61;EPPR=34.0313;GTI=0;LEN=1;MEANALT=8.33333;MQM=59.2917;MQMR=56.3929;NS=3;NUMALT=2;ODDS=0;PAIRED=0.906807;PAIREDR=0.339286;PAO=0;PQA=0;PQR=43;PRO=2;QA=35026;QR=3783;RO=112;RPL=1234;RPP=2682.61;RPPR=246.215;RPR=0;RUN=1;SAF=1234;SAP=2682.61;SAR=0;SRF=76;SRP=34.0313;SRR=36;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:529:44,53,414:44:1483:53,414:1652,11399:-900.322,-780.877,-883.09,-14.5122,0,-8.06133 1|1:509:33,65,396:33:1151:65,396:2007,11159:-942.122,-791.041,-864.819,-67.6512,0,-41.7978 1|1:557:35,77,424:35:1149:77,424:2356,12468:-1079.63,-901.362,-970.85,-96.1294,0,-61.165 dDocent_Contig_2185 41 . A G 255.294 . AB=0.232143;ABP=37.909;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=84;DPB=84;DPRA=1;EPP=31.2394;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.971831;PAO=0;PQA=0;PQR=0;PRO=0;QA=502;QR=2784;RO=71;RPL=0;RPP=31.2394;RPPR=157.185;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:26,5:26:995:5:200:-9.0471,0,-80.5047 0/1:25:17,8:17:683:8:302:-20.0052,0,-54.2747 0/0:28:28,0:28:1106:0:0:0,-8.42884,-99.8272 dDocent_Contig_2186 52 . T C 731.084 . AB=0.329545;ABP=25.2185;AC=3;AF=0.5;AN=6;AO=29;CIGAR=1X;DP=88;DPB=88;DPRA=0;EPP=65.983;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1156;QR=2328;RO=59;RPL=29;RPP=65.983;RPPR=131.127;RPR=0;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:16,11:16:646:11:435:-31.3774,0,-50.3465 0/1:21:17,4:17:667:4:160:-8.4618,0,-54.0336 0/1:40:26,14:26:1015:14:561:-38.7921,0,-79.5914 dDocent_Contig_2187 63 . G C 32.7304 . AB=0.157895;ABP=22.325;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=47;DPB=47;DPRA=1.35714;EPP=9.52472;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=1667;RO=44;RPL=3;RPP=9.52472;RPPR=98.5551;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:561:0:0:0,-4.51545,-50.815 0/0:13:13,0:13:514:0:0:0,-3.91339,-46.6069 0/1:19:16,3:16:592:3:116:-5.09671,0,-47.8698 dDocent_Contig_2188 52 . C A 59.6016 . AB=0.25;ABP=9.52472;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=40;DPB=40;DPRA=0.857143;EPP=9.52472;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=1447;RO=37;RPL=3;RPP=9.52472;RPPR=83.3548;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:9,3:9:352:3:119:-7.48303,0,-28.4281 0/0:9:9,0:9:341:0:0:0,-2.70927,-31.0402 0/0:19:19,0:19:754:0:0:0,-5.71957,-68.1849 dDocent_Contig_2189 14 . C G 1314.9 . AB=0.322581;ABP=45.389;AC=2;AF=0.333333;AN=6;AO=54;CIGAR=1X;DP=273;DPB=273;DPRA=0;EPP=120.27;EPPR=478.563;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.944444;PAIREDR=0.986301;PAO=0;PQA=0;PQR=0;PRO=0;QA=2173;QR=8795;RO=219;RPL=0;RPP=120.27;RPPR=478.563;RPR=54;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=219;SRP=478.563;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:118:114,4:114:4574:4:161:0,-20.6461,-396.707 0/1:106:75,31:75:2999:31:1251:-80.9499,0,-238.094 0/1:49:30,19:30:1222:19:761:-54.0634,0,-95.4977 dDocent_Contig_2190 18 . C T 8004.84 . AB=0.273608;ABP=186.87;AC=6;AF=1;AN=6;AO=113;CIGAR=2M2X3M;DP=413;DPB=412.429;DPRA=0;EPP=214.873;EPPR=61.6401;GTI=0;LEN=1;MEANALT=10.6667;MQM=59.1504;MQMR=60;NS=3;NUMALT=6;ODDS=0;PAIRED=0.955752;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4466;QR=1066;RO=27;RPL=0;RPP=248.387;RPPR=61.6401;RPR=113;RUN=1;SAF=109;SAP=214.873;SAR=4;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:132:10,1,10,71,2,8,16:10:396:1,10,71,2,8,16:36,402,2733,71,316,641:-238.137,-238.48,-270.773,-208.017,-237.944,-237.602,-20.2164,-50.1448,-19.6804,-31.4388,-235.363,-265.29,-234.828,-47.0286,-267.356,-215.143,-245.07,-214.607,-26.8069,-241.954,-245.329,-188.337,-218.265,-187.802,0,-215.149,-194.928,-216.116 1|1:160:11,4,14,56,0,4,49:11:430:4,14,56,0,4,49:149,495,2204,0,155,1944:-302.546,-294.694,-328.843,-266.084,-290.274,-297.223,-124.555,-148.746,-120.137,-143.051,-305.857,-330.047,-301.437,-159.909,-341.21,-293.124,-317.314,-288.704,-147.176,-328.478,-327.274,-145.955,-170.146,-141.537,0,-181.309,-168.576,-166.558 1|1:121:6,7,4,40,9,0,48:6:240:7,4,40,9,0,48:252,160,1606,312,0,1881:-265.324,-248.457,-266.121,-253.95,-255.048,-272.517,-134.79,-135.89,-141.381,-142.52,-241.777,-242.875,-248.368,-129.209,-258.838,-267.13,-268.228,-273.721,-154.562,-261.548,-286.901,-112.579,-113.68,-119.17,0,-106.999,-132.35,-117.901 dDocent_Contig_2191 21 . T G 3684.73 . AB=0.518828;ABP=3.74624;AC=3;AF=0.5;AN=6;AO=124;CIGAR=1X3M;DP=239;DPB=239;DPRA=0;EPP=272.273;EPPR=204.957;GTI=0;LEN=1;MEANALT=3;MQM=58.5887;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.733871;PAIREDR=0.784946;PAO=0;PQA=0;PQR=0;PRO=0;QA=4895;QR=3686;RO=93;RPL=0;RPP=272.273;RPPR=204.957;RPR=124;RUN=1;SAF=124;SAP=272.273;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:70:32,3,33:32:1256:3,33:111,1306:-97.8198,-98.3737,-200.765,0,-94.2557,-93.401 0|1:99:31,7,60:31:1227:7,60:257,2348:-183.032,-171.362,-270.24,0,-80.0102,-82.9484 0|1:70:30,9,31:30:1203:9,31:354,1241:-93.1436,-73.0566,-169.461,0,-70.0014,-89.7872 dDocent_Contig_2195 9 . C T 242.2 . AB=0.0561798;ABP=307.553;AC=0;AF=0;AN=6;AO=10;CIGAR=1X1M1X3M1X;DP=243;DPB=243.571;DPRA=0;EPP=24.725;EPPR=339.802;GTI=0;LEN=1;MEANALT=8;MQM=46.9;MQMR=59.3374;NS=3;NUMALT=6;ODDS=0;PAIRED=0;PAIREDR=0.957055;PAO=0;PQA=0;PQR=0;PRO=0;QA=382;QR=6387;RO=163;RPL=0;RPP=24.725;RPPR=339.802;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=163;SRP=356.96;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:96:60,8,0,9,4,2,5:60:2343:8,0,9,4,2,5:303,0,359,163,77,192:-11.5062,-5.13709,-192.455,-29.568,-194.863,-219.297,0,-165.297,-189.731,-187.022,-16.1184,-181.414,-205.849,-176.283,-204.645,-23.2462,-188.541,-212.975,-183.409,-199.527,-212.373,-13.8129,-179.107,-203.541,-173.975,-190.093,-197.219,-202.036 0|0:82:56,2,0,5,6,8,2:56:2194:2,0,5,6,8,2:79,0,198,241,320,82:-9.50322,-20.0126,-196.76,-26.3609,-197.362,-203.711,-10.0664,-181.066,-187.415,-185.91,-6.50094,-177.502,-183.851,-167.555,-182.045,0,-171.001,-177.35,-161.054,-157.49,-174.941,-19.5918,-190.593,-196.942,-180.647,-177.082,-170.581,-196.34 0|0:65:47,0,4,1,7,0,1:47:1850:0,4,1,7,0,1:0,162,40,278,0,41:-8.73344,-22.8819,-175.065,-9.52211,-161.706,-160.502,-19.5868,-171.77,-158.411,-171.469,0,-152.181,-138.822,-148.886,-150.074,-22.8819,-175.065,-161.706,-171.77,-152.181,-175.065,-19.4972,-171.681,-158.322,-168.386,-148.797,-171.681,-171.38 dDocent_Contig_2197 7 . C T 127.883 . AB=0.205882;ABP=28.557;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=103;DPB=103;DPRA=0.985507;EPP=18.2106;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.895833;PAO=0;PQA=0;PQR=0;PRO=0;QA=272;QR=3641;RO=96;RPL=0;RPP=18.2106;RPPR=211.472;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:38,0:38:1438:0:0:0,-11.4391,-129.698 0/0:31:31,0:31:1163:0:0:0,-9.33193,-104.969 0/1:34:27,7:27:1040:7:272:-14.6122,0,-83.6699 dDocent_Contig_2198 22 . G T 321.413 . AB=0.297872;ABP=19.6891;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X2M1X;DP=47;DPB=47;DPRA=0;EPP=33.4109;EPPR=65.983;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=552;QR=1132;RO=29;RPL=0;RPP=33.4109;RPPR=65.983;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:11,8,0:11:426:8,0:321,0:-23.5391,0,-32.9696,-26.8505,-35.3778,-61.8333 0|1:20:12,5,3:12:474:5,3:191,121:-12.0439,0,-37.4935,-5.67402,-29.0227,-43.7853 0|1:8:6,1,1:6:232:1,1:40,40:-1.4889,0,-18.7399,0,-15.7439,-18.7399 dDocent_Contig_2199 24 . G T 189.576 . AB=0.177419;ABP=59.0483;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=169;DPB=169;DPRA=1.15888;EPP=26.8965;EPPR=346.103;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=431;QR=5952;RO=158;RPL=0;RPP=26.8965;RPPR=346.103;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=158;SRP=346.103;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:51,11:51:1932:11:431:-20.4805,0,-155.443 0/0:53:53,0:53:1952:0:0:0,-15.9546,-175.908 0/0:54:54,0:54:2068:0:0:0,-16.2556,-186.338 dDocent_Contig_2200 37 . T C 225.229 . AB=0.238095;ABP=28.0339;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=138;DPB=138;DPRA=0.875;EPP=24.725;EPPR=280.959;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=407;QR=5048;RO=128;RPL=0;RPP=24.725;RPPR=280.959;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=128;SRP=280.959;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:1033:0:0:0,-7.82678,-93.2668 0/0:70:70,0:70:2777:0:0:0,-21.0721,-250.053 0/1:42:32,10:32:1238:10:407:-24.3468,0,-99.0453 dDocent_Contig_2201 32 . T G 30.9135 . AB=0.117647;ABP=46.1843;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=123;DPB=123;DPRA=0.560345;EPP=16.0391;EPPR=257.073;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=4664;RO=117;RPL=0;RPP=16.0391;RPPR=257.073;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=117;SRP=257.073;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:58:58,0:58:2298:0:0:0,-17.4597,-206.991 0/0:31:29,2:29:1158:2:80:0,-1.74014,-96.9096 0/1:34:30,4:30:1208:4:164:-4.91488,0,-98.7588 dDocent_Contig_2202 7 . C T 49.4812 . AB=0.147059;ABP=39.7976;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=93;DPB=93;DPRA=1.15254;EPP=13.8677;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.988636;PAO=0;PQA=0;PQR=0;PRO=0;QA=185;QR=3327;RO=88;RPL=0;RPP=13.8677;RPPR=194.1;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:47:47,0:47:1792:0:0:0,-14.1484,-161.532 0/1:34:29,5:29:1070:5:185:-6.77202,0,-86.3622 0/0:12:12,0:12:465:0:0:0,-3.61236,-42.2018 dDocent_Contig_2203 86 . T G 1405.46 . AB=0.574257;ABP=7.84774;AC=3;AF=0.5;AN=6;AO=58;CIGAR=1X4M;DP=101;DPB=101;DPRA=0;EPP=128.956;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.982759;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1936;QR=1247;RO=37;RPL=58;RPP=128.956;RPPR=83.3548;RPR=0;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:37:9,0,27:9:303:0,27:0,928:-72.8182,-75.5274,-100.079,0,-24.7015,-16.5737 0|1:23:6,0,17:6:207:0,17:0,555:-43.3347,-45.1409,-61.9628,0,-17.1619,-12.0444 0|1:41:22,5,14:22:737:5,14:164,453:-29.9158,-23.2868,-81.475,0,-46.4429,-55.4777 dDocent_Contig_2204 13 . A G 963.646 . AB=0.295455;ABP=50.9801;AC=3;AF=0.5;AN=6;AO=39;CIGAR=1X;DP=132;DPB=132;DPRA=0;EPP=87.6977;EPPR=200.614;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1560;QR=3570;RO=91;RPL=0;RPP=87.6977;RPPR=200.614;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:33,7:33:1302:7:273:-12.8924,0,-105.405 0/1:49:30,19:30:1175:19:757:-53.7005,0,-91.2828 0/1:43:28,13:28:1093:13:530:-35.2947,0,-85.8931 dDocent_Contig_2206 40 . T C 46.5098 . AB=0.113208;ABP=71.8828;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=125;DPB=125;DPRA=1.47222;EPP=16.0391;EPPR=259.244;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=4579;RO=118;RPL=0;RPP=16.0391;RPPR=259.244;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=118;SRP=259.244;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:48:48,0:48:1867:0:0:0,-14.4494,-168.248 0/0:24:23,0:23:892:0:0:0,-6.92369,-80.177 0/1:53:47,6:47:1820:6:245:-6.47488,0,-148.062 dDocent_Contig_2207 20 . C A 1254.82 . AB=0.335616;ABP=37.2779;AC=3;AF=0.5;AN=6;AO=49;CIGAR=1X;DP=146;DPB=146;DPRA=0;EPP=109.412;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1933;QR=3811;RO=97;RPL=0;RPP=109.412;RPPR=213.643;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:15,20:15:567:20:797:-61.5137,0,-40.8151 0/1:48:42,6:42:1653:6:230:-6.61445,0,-134.543 0/1:63:40,23:40:1591:23:906:-62.8772,0,-124.459 dDocent_Contig_2208 17 . T C 883.656 . AB=0.291339;ABP=51.0392;AC=2;AF=0.333333;AN=6;AO=37;CIGAR=1M1X1M;DP=127;DPB=127;DPRA=0;EPP=83.3548;EPPR=122.441;GTI=0;LEN=1;MEANALT=4;MQM=54.4865;MQMR=57.0545;NS=3;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=0.945455;PAO=0;PQA=0;PQR=0;PRO=0;QA=1343;QR=2173;RO=55;RPL=0;RPP=83.3548;RPPR=122.441;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:34:18,2,0,4,10,0:18:711:2,0,4,10,0:80,0,150,398,0:-27.3586,-26.1859,-77.9581,-32.7772,-78.5602,-85.152,-20.4981,-66.2749,-72.867,-71.6629,0,-45.7804,-52.3739,-40.0868,-49.3636,-32.7772,-78.5602,-85.152,-72.867,-52.3739,-85.152 0|0:34:16,0,4,1,8,5:16:629:0,4,1,8,5:0,160,38,192,191:-10.8737,-15.6902,-64.3091,-2.48607,-51.1211,-49.917,-12.5699,-61.1915,-48.003,-60.8904,-1.88583,-50.4683,-37.284,-47.3517,-48.06,0,-48.6372,-35.4466,-45.5191,-34.8022,-47.1321 0|1:59:21,2,11,5,19,0:21:833:2,11,5,19,0:81,431,194,753,0:-55.6538,-55.2957,-123.263,-26.5355,-88.4244,-91.7926,-46.0377,-107.927,-79.1662,-113.101,0,-61.8904,-33.1302,-52.6323,-62.8505,-61.9754,-123.865,-95.104,-114.606,-68.5701,-130.544 dDocent_Contig_2210 10 . C A 3370.99 . AB=0.0555556;ABP=126.543;AC=0;AF=0;AN=6;AO=4;CIGAR=1X2M1X;DP=164;DPB=164;DPRA=0;EPP=11.6962;EPPR=109.412;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=1926;RO=49;RPL=0;RPP=11.6962;RPPR=109.412;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:58:15,0,43:15:590:0,43:0,1718:-137.387,-141.902,-190.433,0,-48.9256,-35.9813 0|0:72:23,4,42:23:893:4,42:154,1684:-131.829,-126.11,-198.273,0,-60.7261,-60.7268 0|0:34:11,0,23:11:443:0,23:0,926:-73.4063,-76.7177,-113.23,0,-36.9147,-29.9911 dDocent_Contig_2211 15 . A G 1350.85 . AB=0.620253;ABP=12.9331;AC=3;AF=0.5;AN=6;AO=49;CIGAR=1X2M1X;DP=79;DPB=79;DPRA=0;EPP=109.412;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=59.4286;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1816;QR=1151;RO=30;RPL=0;RPP=109.412;RPPR=68.1545;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:18:4,14:4:155:14:521:-41.8118,0,-8.90619 0|1:27:10,17:10:392:17:614:-47.4121,0,-27.5099 0|1:34:16,18:16:604:18:681:-51.3838,0,-44.4568 dDocent_Contig_2212 9 . G C 986 . AB=0.333333;ABP=31.9633;AC=3;AF=0.5;AN=6;AO=40;CIGAR=1X;DP=120;DPB=120;DPRA=0;EPP=89.8692;EPPR=172.385;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=55.359;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1544;QR=2955;RO=78;RPL=0;RPP=89.8692;RPPR=172.385;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:23,23:23:861:23:883:-65.9428,0,-63.7659 0/1:17:10,7:10:376:7:272:-19.7297,0,-28.9569 0/1:57:45,10:45:1718:10:389:-18.4504,0,-137.051 dDocent_Contig_2213 57 . G A 99.2116 . AB=0.166667;ABP=43.5445;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=119;DPB=119;DPRA=1.09091;EPP=18.2106;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=267;QR=4366;RO=112;RPL=7;RPP=18.2106;RPPR=246.215;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:1031:0:0:0,-7.82678,-93.0887 0/1:42:35,7:35:1362:7:267:-11.7451,0,-110.209 0/0:51:51,0:51:1973:0:0:0,-15.3525,-177.784 dDocent_Contig_2215 43 . C T 52.6012 . AB=0.116883;ABP=101.178;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=77;DPB=77;DPRA=0;EPP=22.5536;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=364;QR=2687;RO=68;RPL=0;RPP=22.5536;RPPR=150.67;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:26,3:26:1015:3:123:-2.73492,0,-82.914 0/1:23:20,3:20:787:3:122:-4.4488,0,-64.2238 0/1:25:22,3:22:885:3:119:-3.56926,0,-72.4319 dDocent_Contig_2216 32 . T C 208.123 . AB=0.151515;ABP=107.438;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=99;DPB=99;DPRA=0;EPP=35.5824;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=602;QR=2990;RO=84;RPL=0;RPP=35.5824;RPPR=185.414;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:42,4:42:1437:4:163:-1.21105,0,-115.754 0/1:27:20,7:20:750:7:275:-16.9891,0,-59.6974 0/1:26:22,4:22:803:4:164:-7.32312,0,-64.7591 dDocent_Contig_2217 114 . C G 1757.28 . AB=0.636364;ABP=20.7769;AC=3;AF=0.5;AN=6;AO=70;CIGAR=2X;DP=110;DPB=110;DPRA=0;EPP=155.013;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2369;QR=1344;RO=39;RPL=0;RPP=155.013;RPPR=87.6977;RPR=70;RUN=1;SAF=0;SAP=155.013;SAR=70;SRF=0;SRP=87.6977;SRR=39;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:34:17,16:17:586:16:543:-39.1727,0,-43.0454 0|1:30:11,19:11:371:19:634:-48.3421,0,-24.6839 0|1:46:11,35:11:387:35:1192:-93.7361,0,-21.3197 dDocent_Contig_2218 7 . C G 84.3117 . AB=0.153846;ABP=70.66;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=135;DPB=135;DPRA=2.875;EPP=26.8965;EPPR=270.101;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=53.8943;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.813008;PAO=0;PQA=0;PQR=0;PRO=0;QA=336;QR=4718;RO=123;RPL=0;RPP=26.8965;RPPR=270.101;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:50:49,1:49:1868:1:10:0,-14.0515,-156.584 0/0:20:20,0:20:755:0:0:0,-6.0206,-64.5351 0/1:65:54,10:54:2095:10:326:-10.2551,0,-161.102 dDocent_Contig_2219 12 . T C 3130.12 . AB=0.767442;ABP=83.1528;AC=3;AF=0.5;AN=6;AO=99;CIGAR=1X;DP=129;DPB=129;DPRA=0;EPP=217.986;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3962;QR=1192;RO=30;RPL=0;RPP=217.986;RPPR=68.1545;RPR=99;RUN=1;SAF=99;SAP=217.986;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:20,25:20:788:25:997:-76.483,0,-57.6934 0/1:35:5,30:5:200:30:1184:-96.3041,0,-7.84328 0/1:49:5,44:5:204:44:1781:-145.746,0,-3.99356 dDocent_Contig_2220 123 . T C 1958.72 . AB=0.557692;ABP=7.52028;AC=3;AF=0.5;AN=6;AO=87;CIGAR=1X;DP=156;DPB=156;DPRA=0;EPP=191.928;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2750;QR=2288;RO=69;RPL=0;RPP=191.928;RPPR=152.842;RPR=87;RUN=1;SAF=0;SAP=191.928;SAR=87;SRF=0;SRP=152.842;SRR=69;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:5,28:5:140:28:881:-69.6461,0,-2.94229 0/1:55:40,15:40:1340:15:411:-20.6975,0,-104.338 0/1:68:24,44:24:808:44:1458:-111.035,0,-52.562 dDocent_Contig_2221 85 . T C 1142.91 . AB=0.698413;ABP=24.5527;AC=3;AF=0.5;AN=6;AO=44;CIGAR=1X;DP=63;DPB=63;DPRA=0;EPP=98.5551;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1529;QR=656;RO=19;RPL=44;RPP=98.5551;RPPR=44.2683;RPR=0;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:2,14:2:71:14:482:-38.8911,0,-1.92558 0/1:21:5,16:5:176:16:559:-44.3162,0,-9.86367 0/1:26:12,14:12:409:14:488:-36.4249,0,-29.3113 dDocent_Contig_2223 8 . A G 78.6961 . AB=0.208333;ABP=20.744;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=96;DPB=96;DPRA=0.911765;EPP=20.3821;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=301;QR=3344;RO=88;RPL=0;RPP=20.3821;RPPR=194.1;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:34,0:34:1281:0:0:0,-10.235,-115.582 0/1:24:19,5:19:726:5:184:-9.69309,0,-58.4468 0/0:38:35,3:35:1337:3:117:0,-0.528759,-109.708 dDocent_Contig_2224 8 . G A 1411.25 . AB=0.390071;ABP=17.8102;AC=3;AF=0.5;AN=6;AO=55;CIGAR=1X;DP=141;DPB=141;DPRA=0;EPP=122.441;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2090;QR=3258;RO=86;RPL=0;RPP=122.441;RPPR=189.757;RPR=55;RUN=1;SAF=55;SAP=122.441;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:27,22:27:1021:22:831:-60.3604,0,-77.448 0/1:46:34,12:34:1280:12:454:-27.3606,0,-101.645 0/1:46:25,21:25:957:21:805:-58.9269,0,-72.5975 dDocent_Contig_2227 163 . C G 2525.94 . AB=0.701754;ABP=23.1631;AC=4;AF=0.666667;AN=6;AO=80;CIGAR=1X;DP=99;DPB=99;DPRA=0;EPP=176.728;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3110;QR=705;RO=19;RPL=80;RPP=176.728;RPPR=44.2683;RPR=0;RUN=1;SAF=0;SAP=176.728;SAR=80;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:42:2,40:2:79:40:1533:-130.714,-5.14602,0 0/1:26:8,18:8:287:18:715:-56.8507,0,-18.3328 0/1:31:9,22:9:339:22:862:-68.5525,0,-21.5195 dDocent_Contig_2228 129 . G C 587.01 . AB=0.148052;ABP=417.231;AC=3;AF=0.5;AN=6;AO=57;CIGAR=1X3M;DP=385;DPB=385;DPRA=0;EPP=126.784;EPPR=589.308;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.981481;PAO=0;PQA=0;PQR=0;PRO=0;QA=1801;QR=8240;RO=270;RPL=0;RPP=126.784;RPPR=589.308;RPR=57;RUN=1;SAF=0;SAP=126.784;SAR=57;SRF=0;SRP=589.308;SRR=270;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:132:95,13,22:95:2855:13,22:408,709:-28.5872,-24.3869,-248.762,0,-195.5,-221.677 0|1:86:62,7,14:62:1862:7,14:221,429:-15.7275,-16.6071,-163.384,0,-131.104,-144.67 0|1:167:113,21,21:113:3523:21,21:669,663:-19.8697,0,-276.676,-0.543393,-229.663,-277.218 dDocent_Contig_2229 126 . A G 1074.42 . AB=0.47;ABP=3.79203;AC=3;AF=0.5;AN=6;AO=47;CIGAR=1X;DP=100;DPB=100;DPRA=0;EPP=105.07;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1579;QR=1718;RO=53;RPL=0;RPP=105.07;RPPR=118.098;RPR=47;RUN=1;SAF=0;SAP=105.07;SAR=47;SRF=0;SRP=118.098;SRR=53;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:20,16:20:621:16:527:-36.9049,0,-45.3485 0/1:31:16,15:16:542:15:507:-36.6209,0,-39.7697 0/1:33:17,16:17:555:16:545:-39.4389,0,-40.3252 dDocent_Contig_2230 169 . C A 47.6402 . AB=0.12963;ABP=67.3502;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=159;DPB=159;DPRA=0;EPP=26.8965;EPPR=324.388;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.97973;PAO=0;PQA=0;PQR=0;PRO=0;QA=408;QR=5650;RO=148;RPL=11;RPP=26.8965;RPPR=324.388;RPR=0;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=324.388;SRR=148;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:66:63,3:63:2403:3:118:0,-8.86547,-205.452 0/0:39:38,1:38:1459:1:40:0,-7.74449,-127.567 0/1:54:47,7:47:1788:7:250:-6.58792,0,-144.886 dDocent_Contig_2231 76 . G A 142.332 . AB=0.175676;ABP=70.6194;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=96;DPB=96;DPRA=0;EPP=35.5824;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=490;QR=2760;RO=81;RPL=15;RPP=35.5824;RPPR=178.9;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:20,2:20:680:2:64:0,-0.544106,-55.4408 0/1:15:8,7:8:267:7:225:-16.0502,0,-19.8404 0/1:59:53,6:53:1813:6:201:-0.658531,0,-145.693 dDocent_Contig_2232 98 . N A 31026.7 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=1129;CIGAR=1X;DP=1132;DPB=1132;DPRA=0;EPP=2454.6;EPPR=0;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.972542;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=34471;QR=0;RO=0;RPL=1129;RPP=2454.6;RPPR=0;RPR=0;RUN=1;SAF=1129;SAP=2454.6;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:650:0,650:0:0:650:20128:-1811.36,-195.67,0 1/1:397:0,395:0:0:395:11868:-1067.91,-118.907,0 1/1:85:0,84:0:0:84:2475:-222.913,-25.2865,0 dDocent_Contig_2233 23 . A G 379.183 . AB=0.104167;ABP=133.661;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=2M1X;DP=139;DPB=173.667;DPRA=1.11628;EPP=24.725;EPPR=252.73;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=389;QR=4521;RO=115;RPL=0;RPP=24.725;RPPR=252.73;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=115;SRP=252.73;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:36:20,13,3:20:783:13,3:497,118:-34.7476,0,-60.4666,-31.0594,-54.673,-94.5434 0|1:60:53,0,7:53:2087:0,7:0,271:-6.69357,-22.6482,-194.336,0,-172.076,-169.968 0|0:43:42,0,0:42:1651:0,0:0,0:0,-12.6433,-148.423,-12.6433,-148.423,-148.423 dDocent_Contig_2234 129 . A T 409.753 . AB=0.583333;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=38;DPB=38;DPRA=3.42857;EPP=33.4109;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=552;QR=925;RO=24;RPL=0;RPP=33.4109;RPPR=55.1256;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:218:0:0:0,-1.80618,-19.9705 0/1:24:10,14:10:394:14:552:-42.7992,0,-28.5937 0/0:8:8,0:8:313:0:0:0,-2.40824,-28.5341 dDocent_Contig_2235 131 . G A 56.948 . AB=0.181818;ABP=22.3561;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=82;DPB=82;DPRA=3.22727;EPP=18.2106;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=265;QR=2952;RO=75;RPL=0;RPP=18.2106;RPPR=165.871;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=165.871;SRR=75;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:49:46,3:46:1808:3:112:0,-4.30457,-152.49 0/1:22:18,4:18:712:4:153:-7.51871,0,-57.7852 0/0:11:11,0:11:432:0:0:0,-3.31133,-39.23 dDocent_Contig_2236 7 . C T 831.083 . AB=0.463768;ABP=3.79707;AC=3;AF=0.5;AN=6;AO=32;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=72.4974;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1204;QR=1407;RO=37;RPL=0;RPP=72.4974;RPPR=83.3548;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:11,3:11:419:3:114:-6.4178,0,-33.8479 0/1:14:11,3:11:412:3:111:-6.13836,0,-33.2136 0/1:41:15,26:15:576:26:979:-76.075,0,-39.8403 dDocent_Contig_2237 28 . A G 122.162 . AB=0.186047;ABP=39.8243;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=133;DPB=133;DPRA=0.977778;EPP=26.8965;EPPR=267.93;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=415;QR=4854;RO=122;RPL=0;RPP=26.8965;RPPR=267.93;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=122;SRP=267.93;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:45:42,3:42:1681:3:119:0,-2.45134,-140.421 0/0:45:45,0:45:1781:0:0:0,-13.5463,-160.514 0/1:43:35,8:35:1392:8:296:-14.0401,0,-112.594 dDocent_Contig_2238 24 . A G 530.877 . AB=0.203008;ABP=104.906;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1X;DP=133;DPB=133;DPRA=0;EPP=61.6401;EPPR=233.186;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1084;QR=4209;RO=106;RPL=0;RPP=61.6401;RPPR=233.186;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:34,7:34:1339:7:277:-12.9565,0,-108.425 0/1:51:41,10:41:1624:10:399:-20.9157,0,-131.032 0/1:41:31,10:31:1246:10:408:-24.7384,0,-100.068 dDocent_Contig_2239 36 . T A 158.402 . AB=0.15873;ABP=66.7413;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=183;DPB=183;DPRA=1.44681;EPP=26.8965;EPPR=376.504;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=444;QR=6856;RO=172;RPL=0;RPP=26.8965;RPPR=376.504;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=172;SRP=376.504;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:47:47,0:47:1885:0:0:0,-14.1484,-169.856 0/1:63:53,10:53:2102:10:403:-17.6641,0,-170.408 0/0:73:72,1:72:2869:1:41:0,-17.8806,-254.217 dDocent_Contig_2240 33 . T C 1435.71 . AB=0.6;ABP=9.95901;AC=3;AF=0.5;AN=6;AO=48;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=107.241;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1913;QR=1215;RO=32;RPL=0;RPP=107.241;RPPR=72.4974;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:12,11:12:451:11:440:-33.0323,0,-34.0084 0/1:18:10,8:10:389:8:315:-23.297,0,-29.9444 0/1:39:10,29:10:375:29:1158:-92.7644,0,-22.3493 dDocent_Contig_2241 98 . N T 55.1286 . AB=0;ABP=0;AC=2;AF=0.5;AN=4;AO=2;CIGAR=1X;DP=3;DPB=3;DPRA=2;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=53;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:53:-5.03393,-0.60206,0 0/0:1:0,0:0:0:0:0:0,0,0 dDocent_Contig_2242 23 . C T 1854.18 . AB=0.717647;ABP=37.9838;AC=3;AF=0.5;AN=6;AO=61;CIGAR=1X;DP=85;DPB=85;DPRA=0;EPP=135.47;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2395;QR=928;RO=24;RPL=0;RPP=135.47;RPPR=55.1256;RPR=61;RUN=1;SAF=61;SAP=135.47;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:9,11:9:339:11:442:-34.1152,0,-24.8362 0/1:36:12,24:12:466:24:929:-73.0736,0,-31.452 0/1:29:3,26:3:123:26:1024:-83.7261,0,-2.73492 dDocent_Contig_2243 8 . A G 353.639 . AB=0.136691;ABP=162.371;AC=1;AF=0.166667;AN=6;AO=26;CIGAR=2X1M1X;DP=232;DPB=232;DPRA=0;EPP=59.4686;EPPR=402.561;GTI=0;LEN=1;MEANALT=4;MQM=58.7308;MQMR=60;NS=3;NUMALT=2;ODDS=2.77556e-17;PAIRED=0;PAIREDR=0.380435;PAO=0;PQA=0;PQR=0;PRO=0;QA=941;QR=7083;RO=184;RPL=0;RPP=59.4686;RPPR=402.561;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=184;SRP=402.561;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:80:58,15,1:58:2212:15,1:544,29:-26.6817,0,-176.96,-41.8362,-179.168,-223.007 0|0:59:45,4,8:45:1727:4,8:142,313:-12.2051,-14.1917,-154.739,0,-130.207,-139.366 0|0:93:81,7,2:81:3144:7,2:255,80:0,-3.5696,-259.785,-17.7887,-255.302,-275.528 dDocent_Contig_2245 24 . T G 229.454 . AB=0.27027;ABP=19.9713;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=117;DPB=117;DPRA=0;EPP=33.4109;EPPR=226.672;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=543;QR=4146;RO=103;RPL=0;RPP=33.4109;RPPR=226.672;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:39,2:39:1571:2:76:0,-5.12756,-134.41 0/0:39:37,2:37:1487:2:72:0,-4.90585,-127.24 0/1:37:27,10:27:1088:10:395:-24.7693,0,-87.0667 dDocent_Contig_2246 9 . A T 319.019 . AB=0.0869565;ABP=105.258;AC=3;AF=0.5;AN=6;AO=6;CIGAR=2X5M1X3M;DP=112;DPB=113.636;DPRA=0;EPP=16.0391;EPPR=105.07;GTI=0;LEN=1;MEANALT=8;MQM=29;MQMR=60;NS=3;NUMALT=8;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=174;QR=1832;RO=47;RPL=0;RPP=16.0391;RPPR=105.07;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:35:14,0,0,8,0,0,2,4,4:14:551:0,0,8,0,0,2,4,4:0,0,222,0,0,75,132,162:-11.4619,-15.6763,-61.0376,-15.6763,-61.0376,-61.0376,0,-45.3644,-45.3644,-42.9561,-15.6763,-61.0376,-61.0376,-45.3644,-61.0376,-15.6763,-61.0376,-61.0376,-45.3644,-61.0376,-61.0376,-9.68763,-55.0524,-55.0524,-39.3794,-55.0524,-55.0524,-54.4503,-6.0814,-51.4468,-51.4468,-35.7757,-51.4468,-51.4468,-45.4614,-50.2427,-2.42046,-47.791,-47.791,-32.1175,-47.791,-47.791,-41.8051,-38.1995,-46.5869 0|1:34:15,4,0,2,3,2,3,2,0:15:585:4,0,2,3,2,3,2,0:153,0,79,116,77,114,42,0:-7.19928,0,-46.9129,-11.7147,-48.117,-59.8262,-5.70238,-42.1073,-53.8167,-53.2146,-2.82062,-39.2269,-50.9363,-44.9266,-50.0332,-5.81319,-42.2179,-53.9273,-47.9176,-45.0372,-53.3252,-2.63624,-39.0428,-50.7523,-44.7426,-41.8621,-44.8532,-49.8492,-9.088,-45.4877,-57.1959,-51.1868,-48.3066,-51.2974,-48.1226,-56.5938,-11.7147,-48.117,-59.8262,-53.8167,-50.9363,-53.9273,-50.7523,-57.1959,-59.8262 0|1:43:18,8,5,5,0,0,5,0,1:18:696:8,5,5,0,0,5,0,1:319,194,190,0,0,195,0,41:-18.7625,0,-54.7705,-9.53842,-42.5378,-65.209,-9.40366,-42.4033,-51.9387,-65.0746,-24.181,-57.1788,-66.7142,-66.5797,-81.3555,-24.181,-57.1788,-66.7142,-66.5797,-81.3555,-81.3555,-8.67983,-41.6806,-51.2162,-51.0817,-65.8575,-65.8575,-64.3524,-24.181,-57.1788,-66.7142,-66.5797,-81.3555,-81.3555,-65.8575,-81.3555,-20.795,-53.7936,-63.3291,-63.1946,-77.9705,-77.9705,-62.4724,-77.9705,-77.6695 dDocent_Contig_2247 22 . T C 1398.23 . AB=0.594937;ABP=9.19487;AC=3;AF=0.5;AN=6;AO=47;CIGAR=1X;DP=79;DPB=79;DPRA=0;EPP=105.07;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1868;QR=1241;RO=32;RPL=0;RPP=105.07;RPPR=72.4974;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:19,14:19:724:14:553:-40.1773,0,-55.5443 0/1:21:5,16:5:200:16:639:-51.5236,0,-12.0579 0/1:25:8,17:8:317:17:676:-53.6449,0,-21.3678 dDocent_Contig_2248 9 . A T 332.844 . AB=0.0401235;ABP=598.181;AC=0;AF=0;AN=6;AO=19;CIGAR=1X1M1X1M1X;DP=522;DPB=522;DPRA=0;EPP=44.2683;EPPR=721.065;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=59.8792;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.794686;PAO=0;PQA=0;PQR=0;PRO=0;QA=748;QR=15773;RO=414;RPL=0;RPP=44.2683;RPPR=902;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=392;SRP=721.065;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:159:128,8,15,0:128:4875:8,15,0:311,602,0:-11.0805,-24.0564,-421.271,0,-374.074,-395.115,-49.6123,-423.679,-399.631,-449.236 0|0:165:129,5,20,6:129:4893:5,20,6:200,785,235:-25.7267,-48.083,-447.76,0,-384.704,-395.16,-45.2376,-429.943,-381.858,-444.613 0|0:198:157,6,14,13:157:6005:6,14,13:237,558,531:0,-27.7598,-518.668,-1.3106,-474.522,-489.81,-3.44254,-476.658,-450.208,-492.247 dDocent_Contig_2249 69 . C A 72.5249 . AB=0.125;ABP=71.4117;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=168;DPB=168;DPRA=0.9;EPP=26.8965;EPPR=343.931;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=440;QR=6256;RO=157;RPL=11;RPP=26.8965;RPPR=343.931;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=157;SRP=343.931;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:52:48,4:48:1903:4:156:0,-1.23736,-157.064 0/1:56:49,7:49:1962:7:284:-9.07631,0,-159.92 0/0:60:60,0:60:2391:0:0:0,-18.0618,-215.343 dDocent_Contig_2250 19 . G A 123.137 . AB=0.333333;ABP=6.62942;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=43;DPB=43;DPRA=1.07143;EPP=13.8677;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=1531;RO=38;RPL=0;RPP=13.8677;RPPR=85.5263;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:800:0:0:0,-6.0206,-72.3181 0/1:15:10,5:10:406:5:203:-14.1376,0,-32.3852 0/0:8:8,0:8:325:0:0:0,-2.40824,-29.6196 dDocent_Contig_2251 15 . G A 77.2454 . AB=0.222222;ABP=15.074;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=31;DPB=31;DPRA=2.76923;EPP=11.6962;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=1085;RO=27;RPL=0;RPP=11.6962;RPPR=61.6401;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:244:0:0:0,-1.80618,-22.3388 0/1:18:14,4:14:556:4:162:-9.54842,0,-44.9647 0/0:7:7,0:7:285:0:0:0,-2.10721,-26.0244 dDocent_Contig_2254 2 . A G 42.7092 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=6I2X3M1X2M1X3M1X1M1X;DP=7;DPB=8.46667;DPRA=0.75;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=14;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=153;PRO=4;QA=107;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:3:0,3:0:0:3:107:-3.66761,-0.90309,0 1|1:4:0,0:0:0:0:0:0,0,0 dDocent_Contig_2255 37 . G C 1571.08 . AB=0.654321;ABP=19.7655;AC=3;AF=0.5;AN=6;AO=53;CIGAR=1X;DP=81;DPB=81;DPRA=0;EPP=118.098;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2067;QR=1053;RO=28;RPL=0;RPP=118.098;RPPR=63.8115;RPR=53;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:8,18:8:310:18:693:-54.8696,0,-20.4349 0/1:23:9,14:9:335:14:545:-42.4669,0,-23.5766 0/1:32:11,21:11:408:21:829:-65.2944,0,-27.427 dDocent_Contig_2257 7 . G C 3778 . AB=0.625592;ABP=31.9187;AC=3;AF=0.5;AN=6;AO=132;CIGAR=1X;DP=211;DPB=211;DPRA=0;EPP=289.645;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4956;QR=2805;RO=79;RPL=0;RPP=289.645;RPPR=174.557;RPR=132;RUN=1;SAF=132;SAP=289.645;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:18,39:18:627:39:1454:-113.981,0,-39.5854 0/1:83:47,36:47:1739:36:1356:-97.3434,0,-131.782 0/1:71:14,57:14:439:57:2146:-171.999,0,-18.4355 dDocent_Contig_2258 76 . C T 1433.22 . AB=0.75;ABP=31.2394;AC=4;AF=0.666667;AN=6;AO=54;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=120.27;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1834;QR=479;RO=14;RPL=54;RPP=120.27;RPPR=33.4109;RPR=0;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:8,10:8:292:10:354:-26.7774,0,-21.2099 0/1:34:5,29:5:152:29:1018:-81.6892,0,-3.74331 1/1:16:1,15:1:35:15:462:-38.3759,-1.31785,0 dDocent_Contig_2259 82 . T C 35.9538 . AB=0.16;ABP=28.1125;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=131;DPB=131;DPRA=1.83929;EPP=13.8677;EPPR=276.616;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=174;QR=4316;RO=126;RPL=5;RPP=13.8677;RPPR=276.616;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=126;SRP=276.616;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:967:0:0:0,-8.42884,-87.3433 0/0:78:77,1:77:2626:1:34:0,-20.0814,-233.199 0/1:25:21,4:21:723:4:140:-5.41918,0,-57.8651 dDocent_Contig_2260 159 . T A 1881.27 . AB=0.717391;ABP=40.775;AC=3;AF=0.5;AN=6;AO=66;CIGAR=1X;DP=92;DPB=92;DPRA=0;EPP=146.327;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2449;QR=936;RO=26;RPL=66;RPP=146.327;RPPR=59.4686;RPR=0;RUN=1;SAF=0;SAP=146.327;SAR=66;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:13,25:13:472:25:918:-71.4851,0,-31.3772 0/1:24:8,16:8:284:16:572:-44.5731,0,-18.6733 0/1:30:5,25:5:180:25:959:-77.5917,0,-7.521 dDocent_Contig_2261 151 . G A 221.509 . AB=0.3125;ABP=12.7819;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=52;DPB=52;DPRA=0.8;EPP=24.725;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=384;QR=1542;RO=42;RPL=0;RPP=24.725;RPPR=94.2121;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=94.2121;SRR=42;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:724:0:0:0,-6.0206,-65.4702 0/1:12:10,2:10:357:2:78:-3.79111,0,-28.8524 0/1:20:12,8:12:461:8:306:-21.8803,0,-35.8186 dDocent_Contig_2262 171 . A G 122.008 . AB=0.190476;ABP=37.9607;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=59;DPB=59;DPRA=1.23529;EPP=20.3821;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=307;QR=1967;RO=51;RPL=8;RPP=20.3821;RPPR=113.755;RPR=0;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=113.755;SRR=51;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:12,4:12:444:4:164:-10.3334,0,-35.4787 0/1:26:22,4:22:868:4:143:-5.39023,0,-70.606 0/0:17:17,0:17:655:0:0:0,-5.11751,-59.2723 dDocent_Contig_2263 95 . C A 2112.88 . AB=0.733333;ABP=38.4777;AC=4;AF=0.666667;AN=6;AO=76;CIGAR=1X;DP=97;DPB=97;DPRA=0;EPP=168.042;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2630;QR=694;RO=20;RPL=76;RPP=168.042;RPPR=46.4397;RPR=0;RUN=1;SAF=76;SAP=168.042;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:22:0,21:0:0:21:717:-64.5933,-6.32163,0 0/1:49:7,42:7:244:42:1467:-117.576,0,-7.54904 0/1:26:13,13:13:450:13:446:-32.6418,0,-33.0045 dDocent_Contig_2264 9 . A G 204.285 . AB=0.149533;ABP=117.165;AC=2;AF=0.333333;AN=6;AO=21;CIGAR=1X3M3I4M;DP=174;DPB=181.875;DPRA=0;EPP=48.6112;EPPR=330.903;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=795;QR=5871;RO=151;RPL=0;RPP=48.6112;RPPR=330.903;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=151;SRP=330.903;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:37:31,6:31:1180:6:230:-9.9275,0,-95.3558 0|1:70:60,10:60:2344:10:386:-14.0239,0,-190.081 0|0:67:60,5:60:2347:5:179:0,-3.39822,-194.99 dDocent_Contig_2265 24 . C T 2478.37 . AB=0.0346535;ABP=382.953;AC=0;AF=0;AN=6;AO=7;CIGAR=1M1I5M1X;DP=202;DPB=216.571;DPRA=0;EPP=18.2106;EPPR=220.158;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.93;PAO=0;PQA=0;PQR=0;PRO=0;QA=250;QR=3886;RO=100;RPL=0;RPP=18.2106;RPPR=220.158;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:38:12,3,20,2:12:469:3,20,2:115,768,81:-59.4581,-53.6307,-91.2894,0,-29.1472,-32.5669,-56.3888,-85.5118,-31.9046,-94.3488 0|0:100:52,2,46,0:52:2008:2,46,0:67,1730,0:-126.103,-136.335,-300.639,0,-159.529,-151.103,-141.757,-301.241,-164.951,-306.664 0|0:64:36,2,25,0:36:1409:2,25,0:68,958,0:-67.7986,-73.1228,-188.376,0,-110.372,-108.36,-78.6357,-188.978,-115.885,-194.493 dDocent_Contig_2266 23 . T C 85.1952 . AB=0.217391;ABP=18.9659;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=46;DPB=46;DPRA=0.5;EPP=13.8677;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=1649;RO=41;RPL=0;RPP=13.8677;RPPR=92.0407;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:926:0:0:0,-6.92369,-83.6442 0/1:14:11,3:11:439:3:121:-7.06578,0,-35.6508 0/1:9:7,2:7:284:2:81:-4.97646,0,-23.2245 dDocent_Contig_2267 11 . A G 10641.9 . AB=0.354667;ABP=209.404;AC=3;AF=0.5;AN=6;AO=399;CIGAR=1X;DP=1125;DPB=1125;DPRA=0;EPP=869.428;EPPR=1579.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=5.55112e-17;PAIRED=0.721805;PAIREDR=0.676309;PAO=0;PQA=0;PQR=0;PRO=0;QA=15652;QR=28542;RO=726;RPL=0;RPP=869.428;RPPR=1579.5;RPR=399;RUN=1;SAF=399;SAP=869.428;SAR=0;SRF=726;SRP=1579.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:309:219,90:219:8597:90:3475:-219.806,0,-680.301 0/1:480:292,188:292:11449:188:7391:-520.383,0,-885.228 0/1:336:215,121:215:8496:121:4786:-329.519,0,-663.049 dDocent_Contig_2268 11 . G A 2174.73 . AB=0.475;ABP=3.87889;AC=3;AF=0.5;AN=6;AO=76;CIGAR=1X;DP=160;DPB=160;DPRA=0;EPP=168.042;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3003;QR=3325;RO=84;RPL=0;RPP=168.042;RPPR=185.414;RPR=76;RUN=1;SAF=76;SAP=168.042;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:16,20:16:620:20:805:-61.9299,0,-45.2924 0/1:71:37,34:37:1461:34:1342:-99.6731,0,-110.373 0/1:53:31,22:31:1244:22:856:-61.3926,0,-96.2777 dDocent_Contig_2269 14 . C T 681.846 . AB=0.30303;ABP=36.372;AC=3;AF=0.5;AN=6;AO=30;CIGAR=3X1M;DP=99;DPB=99;DPRA=0;EPP=68.1545;EPPR=146.327;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1136;QR=2629;RO=66;RPL=0;RPP=68.1545;RPPR=146.327;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:31:24,0,6:24:962:0,6:0,228:-11.4658,-18.6906,-97.9631,0,-79.268,-77.4618 0|1:29:19,0,10:19:758:0,10:0,379:-25.7348,-31.4544,-93.8938,0,-62.825,-59.8147 0|1:39:23,2,14:23:909:2,14:60,529:-36.5068,-38.6431,-112.853,0,-70.0993,-70.6744 dDocent_Contig_2270 16 . C T 17129.9 . AB=0.25124;ABP=653.382;AC=3;AF=0.5;AN=6;AO=304;CIGAR=1X3M1I7M;DP=1210;DPB=1308.91;DPRA=0;EPP=663.138;EPPR=272.273;GTI=0;LEN=1;MEANALT=19;MQM=39.3322;MQMR=40;NS=3;NUMALT=4;ODDS=2.22045e-16;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11464;QR=4827;RO=124;RPL=0;RPP=663.138;RPPR=272.273;RPR=304;RUN=1;SAF=304;SAP=663.138;SAR=0;SRF=124;SRP=272.273;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:283:50,71,9,15,102:50:1938:71,9,15,102:2718,333,532,3599:-318.6,-125.258,-252.078,-308.039,-247.839,-453.519,-293.2,-233,-415.778,-436.874,-60.2008,0,-182.78,-167.941,-177.686 1|0:271:42,51,15,14,102:42:1624:51,15,14,102:1909,563,524,3434:-267.878,-134.292,-243.187,-237.118,-215.136,-356.848,-240.555,-218.573,-321.398,-360.586,-21.9805,0,-102.824,-106.26,-115.521 1|0:656:32,182,43,40,276:32:1265:182,43,40,276:6837,1594,1533,9509:-1132.04,-619.947,-661.326,-1019.65,-594.096,-1102.88,-1025.34,-599.784,-999.491,-1109.47,-425.553,0,-399.703,-405.39,-438.634 dDocent_Contig_2271 98 . N T 157.924 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=6;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=168;QR=0;RO=0;RPL=6;RPP=16.0391;RPPR=0;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,2:0:0:2:66:-6.05834,-0.60206,0 1/1:4:0,4:0:0:4:102:-9.43234,-1.20412,0 dDocent_Contig_2272 177 . T A 85.6197 . AB=0.285714;ABP=8.59409;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=28;DPB=28;DPRA=2;EPP=11.6962;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=931;RO=24;RPL=4;RPP=11.6962;RPPR=55.1256;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:262:0:0:0,-2.10721,-23.9273 0/1:14:10,4:10:392:4:158:-10.3859,0,-31.4196 0/0:7:7,0:7:277:0:0:0,-2.10721,-25.2994 dDocent_Contig_2273 9 . A G 344.325 . AB=0.272727;ABP=27.6861;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1X;DP=93;DPB=93;DPRA=2.89474;EPP=35.5824;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=583;QR=2967;RO=78;RPL=0;RPP=35.5824;RPPR=172.385;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:848:0:0:0,-6.92369,-76.6299 0/0:15:15,0:15:577:0:0:0,-4.51545,-52.2719 0/1:55:40,15:40:1542:15:583:-36.2564,0,-122.494 dDocent_Contig_2274 26 . A G 190.664 . AB=0.272727;ABP=17.8158;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=5M1X;DP=106;DPB=106.333;DPRA=0.90411;EPP=22.5536;EPPR=207.129;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=332;QR=3529;RO=94;RPL=0;RPP=22.5536;RPPR=207.129;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:43:43,0,0:43:1611:0,0:0,0:0,-12.9443,-145.26,-12.9443,-145.26,-145.26 0|0:30:30,0,0:30:1109:0,0:0,0:0,-9.0309,-100.111,-9.0309,-100.111,-100.111 0|1:33:21,2,9:21:809:2,9:79,332:-20.8904,-20.7023,-86.5596,0,-60.0096,-63.8029 dDocent_Contig_2276 145 . A G 472.914 . AB=0.409091;ABP=6.16881;AC=1;AF=0.166667;AN=6;AO=24;CIGAR=1X;DP=166;DPB=166;DPRA=0;EPP=55.1256;EPPR=311.359;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=923;QR=5151;RO=142;RPL=0;RPP=55.1256;RPPR=311.359;RPR=24;RUN=1;SAF=0;SAP=55.1256;SAR=24;SRF=0;SRP=311.359;SRR=142;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:26,18:26:901:18:686:-48.8142,0,-68.1366 0/0:47:45,2:45:1611:2:76:0,-6.9336,-138.021 0/0:75:71,4:71:2639:4:161:0,-7.70197,-222.811 dDocent_Contig_2277 9 . T A 304.696 . AB=0.227273;ABP=45.6501;AC=1;AF=0.166667;AN=6;AO=21;CIGAR=1X;DP=278;DPB=278;DPRA=0;EPP=48.6112;EPPR=548.05;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=57.9363;NS=3;NUMALT=1;ODDS=0;PAIRED=0.809524;PAIREDR=0.896414;PAO=0;PQA=0;PQR=0;PRO=0;QA=800;QR=9615;RO=251;RPL=0;RPP=48.6112;RPPR=548.05;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=251;SRP=548.05;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:93:86,4:86:3277:4:152:0,-13.4251,-280.627 0/0:119:116,2:116:4444:2:76:0,-28.6866,-390.492 0/1:66:49,15:49:1894:15:572:-32.2935,0,-142.51 dDocent_Contig_2278 92 . G A 2614.88 . AB=0.695652;ABP=25.9524;AC=4;AF=0.666667;AN=6;AO=93;CIGAR=1X;DP=115;DPB=115;DPRA=0;EPP=204.957;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3204;QR=729;RO=22;RPL=93;RPP=204.957;RPPR=50.7827;RPR=0;RUN=1;SAF=93;SAP=204.957;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:8,14:8:267:14:469:-35.9071,0,-17.7329 0/1:47:13,34:13:427:34:1181:-92.449,0,-24.5962 1/1:46:1,45:1:35:45:1554:-136.655,-10.3488,0 dDocent_Contig_2279 25 . T G 423.676 . AB=0.301587;ABP=24.5527;AC=2;AF=0.333333;AN=6;AO=19;CIGAR=3X;DP=108;DPB=108;DPRA=0.7;EPP=44.2683;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=713;QR=3424;RO=89;RPL=0;RPP=44.2683;RPPR=196.271;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:34:27,7:27:1043:7:259:-13.4261,0,-83.9405 0|0:45:45,0:45:1714:0:0:0,-13.5463,-154.504 0|1:29:17,12:17:667:12:454:-32.4643,0,-51.6334 dDocent_Contig_2282 34 . C T 3033.46 . AB=0.765625;ABP=81.4547;AC=3;AF=0.5;AN=6;AO=98;CIGAR=2X;DP=128;DPB=128;DPRA=0;EPP=215.815;EPPR=65.983;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3852;QR=1110;RO=29;RPL=0;RPP=215.815;RPPR=65.983;RPR=98;RUN=1;SAF=98;SAP=215.815;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:24:4,20:4:158:20:800:-65.0933,0,-7.37593 0|1:52:9,42:9:336:42:1625:-130.742,0,-14.8414 0|1:52:16,36:16:616:36:1427:-113.033,0,-40.1127 dDocent_Contig_2283 99 . N A 120.501 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=7X;DP=4;DPB=5.42857;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=2;PQA=69;PQR=0;PRO=0;QA=134;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:4:0,4:0:0:4:134:-12.0498,-1.20412,0 .:.:.:.:.:.:.:. dDocent_Contig_2288 17 . C T 57.0877 . AB=0.16;ABP=28.1125;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=88;DPB=88;DPRA=0.793651;EPP=11.6962;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=3283;RO=83;RPL=0;RPP=11.6962;RPPR=183.243;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:45:44,0:44:1742:0:0:0,-13.2453,-156.895 0/0:18:18,0:18:729:0:0:0,-5.41854,-65.9353 0/1:25:21,4:21:812:4:163:-7.53268,0,-65.8529 dDocent_Contig_2289 98 . N T 91.4477 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=2X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=98;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:3:0,3:0:0:3:98:-9.14423,-0.90309,0 dDocent_Contig_2290 58 . C T 180.76 . AB=0.214286;ABP=32.7905;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=70;DPB=70;DPRA=0.75;EPP=22.5536;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=368;QR=2372;RO=61;RPL=9;RPP=22.5536;RPPR=135.47;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:8,1:8:321:1:41:-1.3853,0,-26.5483 0/0:28:28,0:28:1088:0:0:0,-8.42884,-98.2079 0/1:33:25,8:25:963:8:327:-19.8661,0,-77.0303 dDocent_Contig_2291 37 . A T 758.46 . AB=0.311828;ABP=31.613;AC=1;AF=0.166667;AN=6;AO=32;CIGAR=1X;DP=208;DPB=208;DPRA=1.15079;EPP=72.4974;EPPR=385.189;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.971591;PAO=0;PQA=0;PQR=0;PRO=0;QA=1277;QR=6875;RO=176;RPL=0;RPP=72.4974;RPPR=385.189;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=176;SRP=385.189;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:63:63,0:63:2402:0:0:0,-18.9649,-216.349 0/0:52:49,3:49:1923:3:106:0,-5.77047,-163.402 0/1:93:64,29:64:2550:29:1171:-77.6699,0,-201.64 dDocent_Contig_2293 43 . T C 514.424 . AB=0.357143;ABP=12.937;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=1X;DP=66;DPB=66;DPRA=2.8;EPP=46.4397;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=790;QR=1558;RO=46;RPL=0;RPP=46.4397;RPPR=102.898;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:18,16:18:607:16:627:-46.5295,0,-44.7049 0/1:22:18,4:18:625:4:163:-8.43577,0,-49.9439 0/0:10:10,0:10:326:0:0:0,-3.0103,-29.6488 dDocent_Contig_2294 98 . N A 2558.66 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=84;CIGAR=1X;DP=84;DPB=84;DPRA=0;EPP=185.414;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2826;QR=0;RO=0;RPL=84;RPP=185.414;RPPR=0;RPR=0;RUN=1;SAF=84;SAP=185.414;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:24:0,24:0:0:24:816:-73.7551,-7.22472,0 1/1:20:0,20:0:0:20:670:-60.6153,-6.0206,0 1/1:40:0,40:0:0:40:1340:-120.893,-12.0412,0 dDocent_Contig_2295 11 . G A 6064.49 . AB=0.0838323;ABP=505.466;AC=0;AF=0;AN=6;AO=28;CIGAR=2M1X1M;DP=334;DPB=334;DPRA=0;EPP=63.8115;EPPR=100.727;GTI=0;LEN=1;MEANALT=5;MQM=58.4286;MQMR=59.2667;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=0.933333;PAO=0;PQA=0;PQR=0;PRO=0;QA=1099;QR=1740;RO=45;RPL=0;RPP=63.8115;RPPR=100.727;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:95:16,6,51,10,11:16:615:6,51,10,11:225,1722,378,437:-130.585,-117.732,-166.42,0,-32.8231,-35.1356,-104.412,-137.237,-19.5039,-151.896,-99.4184,-132.245,-14.5082,-118.924,-146.603 0|0:120:16,1,81,7,9:16:615:1,81,7,9:38,2902,250,351:-225.252,-227.08,-277.158,0,-47.3956,-26,-209.69,-257.081,-30.0086,-257.962,-201.456,-248.848,-21.7699,-231.458,-249.127 0|0:119:13,0,95,3,8:13:510:0,95,3,8:0,3323,116,311:-256.135,-260.048,-301.997,0,-41.9456,-13.3477,-250.519,-292.468,-32.4178,-291.565,-234.506,-276.455,-16.4077,-266.926,-274.047 dDocent_Contig_2296 27 . A G 2068.25 . AB=0.64486;ABP=22.513;AC=3;AF=0.5;AN=6;AO=69;CIGAR=1X;DP=107;DPB=107;DPRA=0;EPP=152.842;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2707;QR=1470;RO=38;RPL=0;RPP=152.842;RPPR=85.5263;RPR=69;RUN=1;SAF=69;SAP=152.842;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:9,32:9:345:32:1255:-100.885,0,-19.0651 0/1:27:11,16:11:431:16:624:-48.3675,0,-31.0149 0/1:39:18,21:18:694:21:828:-63.095,0,-51.0454 dDocent_Contig_2297 73 . C T 56.344 . AB=0.222222;ABP=15.074;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=53;DPB=53;DPRA=1.02857;EPP=11.6962;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=136;QR=1682;RO=49;RPL=4;RPP=11.6962;RPPR=109.412;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:14,4:14:484:4:136:-7.15728,0,-38.471 0/0:16:16,0:16:553:0:0:0,-4.81648,-50.0973 0/0:19:19,0:19:645:0:0:0,-5.71957,-58.3695 dDocent_Contig_2298 18 . G A 151.665 . AB=0.259259;ABP=16.6021;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=104;DPB=104;DPRA=0.701299;EPP=18.2106;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=275;QR=3876;RO=97;RPL=0;RPP=18.2106;RPPR=213.643;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:35:35,0:35:1397:0:0:0,-10.536,-125.99 0/1:27:20,7:20:795:7:275:-16.9904,0,-63.7417 0/0:42:42,0:42:1684:0:0:0,-12.6433,-151.786 dDocent_Contig_2299 144 . G C 97.7803 . AB=0.238095;ABP=15.5221;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=69;DPB=69;DPRA=1.06818;EPP=16.0391;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=236;QR=2495;RO=63;RPL=0;RPP=16.0391;RPPR=139.813;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=139.813;SRR=63;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:858:0:0:0,-6.62266,-77.535 0/1:21:16,5:16:635:5:195:-11.6019,0,-51.1619 0/0:26:25,1:25:1002:1:41:0,-3.73221,-86.3828 dDocent_Contig_2301 19 . C T 4312.45 . AB=0.491803;ABP=3.18829;AC=3;AF=0.5;AN=6;AO=150;CIGAR=10M1X;DP=305;DPB=298.455;DPRA=0;EPP=328.731;EPPR=300.502;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5814;QR=5327;RO=137;RPL=0;RPP=328.731;RPPR=300.502;RPR=150;RUN=1;SAF=150;SAP=328.731;SAR=0;SRF=137;SRP=300.502;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:100:60,0,9,29:60:2313:0,9,29:0,351,1111:-73.1216,-91.1834,-281.112,-62.3288,-252.26,-249.55,0,-189.938,-161.085,-181.208 0|1:88:50,7,0,31:50:1948:7,0,31:278,0,1207:-84.1355,-76.2997,-234.303,-99.187,-236.41,-259.296,0,-137.217,-160.103,-150.771 0|1:117:27,0,0,90:27:1066:0,0,90:0,0,3496:-279.51,-287.638,-375.357,-287.638,-375.357,-375.357,0,-88.1115,-88.1115,-61.0188 dDocent_Contig_2302 31 . T C 189.749 . AB=0.136364;ABP=28.2783;AC=2;AF=0.333334;AN=6;AO=4;CIGAR=2M2I9M1X7M;DP=81;DPB=81.5263;DPRA=0;EPP=11.6962;EPPR=126.784;GTI=0;LEN=1;MEANALT=2.5;MQM=54.75;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=142;QR=2216;RO=57;RPL=0;RPP=11.6962;RPPR=126.784;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:22:11,0,6,1,3:11:434:0,6,1,3:0,192,39,102:-12.0825,-15.3938,-51.1356,0,-35.7429,-33.9367,-12.1821,-47.9284,-32.5363,-47.6274,-7.13922,-42.8875,-27.5004,-39.6804,-41.9844 0|1:44:32,3,0,7,0:32:1239:3,0,7,0:90,0,246,0:-10.4149,-12.8637,-113.786,-20.0478,-114.69,-121.875,0,-94.6925,-101.876,-99.7692,-20.0478,-114.69,-121.875,-101.876,-121.875 0|0:15:14,0,0,0,1:14:543:0,0,0,1:0,0,0,40:0,-4.21442,-48.8154,-4.21442,-48.8154,-48.8154,-4.21442,-48.8154,-48.8154,-48.8154,-0.519771,-45.5195,-45.5195,-45.5195,-45.2185 dDocent_Contig_2303 19 . T A 441.919 . AB=0.458333;ABP=3.73412;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1X;DP=48;DPB=48;DPRA=0;EPP=50.7827;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1.33333;MQM=51.2273;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.818182;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=802;QR=997;RO=25;RPL=0;RPP=50.7827;RPPR=57.2971;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:15,7:15:605:7:242:-11.0073,0,-48.1665 0/1:8:2,5:2:79:5:193:-13.2167,0,-5.21228 0/1:18:8,10:8:313:10:367:-25.4907,0,-23.114 dDocent_Contig_2304 107 . N C 130.12 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=134;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:31:-3.09945,-0.30103,0 1/1:3:0,3:0:0:3:103:-9.60997,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_2305 10 . A G 563.374 . AB=0.348485;ABP=16.1707;AC=3;AF=0.5;AN=6;AO=23;CIGAR=1X;DP=66;DPB=66;DPRA=0;EPP=44.6459;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.913043;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=896;QR=1726;RO=43;RPL=0;RPP=52.9542;RPPR=96.3836;RPR=23;RUN=1;SAF=22;SAP=44.6459;SAR=1;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:6,13:6:237:13:502:-39.8006,0,-15.9808 0/1:22:18,4:18:720:4:155:-7.701,0,-58.5036 0/1:25:19,6:19:769:6:239:-14.3587,0,-62.004 dDocent_Contig_2306 20 . G A 1959.53 . AB=0.492754;ABP=3.07324;AC=3;AF=0.5;AN=6;AO=68;CIGAR=1X;DP=138;DPB=138;DPRA=0;EPP=150.67;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2690;QR=2762;RO=70;RPL=0;RPP=150.67;RPPR=155.013;RPR=68;RUN=1;SAF=68;SAP=150.67;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:19,27:19:751:27:1046:-80.5792,0,-54.0668 0/1:47:24,23:24:940:23:918:-68.7767,0,-70.7526 0/1:45:27,18:27:1071:18:726:-52.1203,0,-83.1333 dDocent_Contig_2309 11 . C A 2225.31 . AB=0.16;ABP=103.419;AC=6;AF=1;AN=6;AO=22;CIGAR=2X6M2X5M;DP=159;DPB=158.867;DPRA=0;EPP=50.7827;EPPR=0;GTI=0;LEN=1;MEANALT=8.66667;MQM=33.6364;MQMR=0;NS=3;NUMALT=6;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=680;QR=0;RO=0;RPL=0;RPP=50.7827;RPPR=0;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:47:0,0,4,11,2,12,13:0:0:0,4,11,2,12,13:0,114,335,77,84,473:-60.9162,-60.9162,-60.9162,-52.9407,-52.9407,-51.7366,-36.879,-36.879,-28.9012,-33.5677,-55.0022,-55.0022,-47.026,-30.9624,-54.4001,-59.7914,-59.7914,-51.8235,-35.7774,-53.8792,-56.179,-24.0655,-24.0655,-16.0833,0,-18.1465,-22.955,-20.1522 1|1:53:0,4,1,20,3,13,3:0:0:4,1,20,3,13,3:143,27,685,114,119,111:-62.2568,-51.196,-49.9918,-60.3987,-49.3377,-60.0977,-11.0706,0,-9.21158,-5.05003,-53.4722,-42.4104,-51.614,-2.27832,-52.5692,-58.3875,-47.331,-56.5311,-7.23919,-49.6058,-54.4741,-53.6405,-42.5787,-51.7823,-2.44681,-44.8552,-49.7742,-52.7374 1|1:59:0,0,0,39,0,9,6:0:0:0,0,39,0,9,6:0,0,1252,0,153,96:-102.879,-102.879,-102.879,-102.879,-102.879,-102.879,-11.7402,-11.7402,-11.7402,0,-102.879,-102.879,-102.879,-11.7402,-102.879,-93.6937,-93.6937,-93.6937,-2.56757,-93.6937,-90.9845,-97.4824,-97.4824,-97.4824,-6.35221,-97.4824,-88.3024,-95.6762 dDocent_Contig_2310 134 . A G 3326.22 . AB=0.649425;ABP=36.7555;AC=3;AF=0.5;AN=6;AO=113;CIGAR=1X;DP=174;DPB=174;DPRA=0;EPP=248.387;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4330;QR=2320;RO=61;RPL=0;RPP=248.387;RPPR=135.47;RPR=113;RUN=1;SAF=0;SAP=248.387;SAR=113;SRF=0;SRP=135.47;SRR=61;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:22,30:22:842:30:1126:-85.9801,0,-60.4499 0/1:44:22,22:22:819:22:848:-63.396,0,-60.784 0/1:78:17,61:17:659:61:2356:-188.769,0,-36.1666 dDocent_Contig_2311 143 . C G 1632.33 . AB=0.567797;ABP=7.72129;AC=3;AF=0.5;AN=6;AO=67;CIGAR=1X;DP=118;DPB=118;DPRA=0;EPP=148.499;EPPR=109.412;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2255;QR=1570;RO=49;RPL=0;RPP=148.499;RPPR=109.412;RPR=67;RUN=1;SAF=0;SAP=148.499;SAR=67;SRF=0;SRP=109.412;SRR=49;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:8,15:8:265:15:513:-39.5716,0,-17.25 0/1:61:20,39:20:621:39:1302:-99.4945,0,-38.1979 0/1:34:21,13:21:684:13:440:-29.6896,0,-51.6301 dDocent_Contig_2313 114 . T C 118.253 . AB=0.285714;ABP=11.386;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=41;DPB=41;DPRA=2.1;EPP=3.0103;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=218;QR=1183;RO=35;RPL=0;RPP=16.0391;RPPR=79.0118;RPR=6;RUN=1;SAF=3;SAP=3.0103;SAR=3;SRF=0;SRP=79.0118;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:302:0:0:0,-2.70927,-27.5062 0/1:21:15,6:15:513:6:218:-13.6492,0,-40.1744 0/0:11:11,0:11:368:0:0:0,-3.31133,-33.4431 dDocent_Contig_2314 53 . G C 87.451 . AB=0.285714;ABP=8.59409;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=68;DPB=68;DPRA=0.518519;EPP=11.6962;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=2486;RO=64;RPL=4;RPP=11.6962;RPPR=141.985;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:40,0:40:1557:0:0:0,-12.0412,-140.372 0/1:14:10,4:10:395:4:160:-10.569,0,-31.6935 0/0:14:14,0:14:534:0:0:0,-4.21442,-48.3949 dDocent_Contig_2315 10 . A C 278.344 . AB=0.333333;ABP=10.9724;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=126;DPB=126;DPRA=0.645455;EPP=31.2394;EPPR=248.387;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.708;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.911504;PAO=0;PQA=0;PQR=0;PRO=0;QA=516;QR=4438;RO=113;RPL=0;RPP=31.2394;RPPR=248.387;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=113;SRP=248.387;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:55:55,0:55:2179:0:0:0,-16.5566,-195.671 0/0:38:36,2:36:1405:2:80:0,-3.84735,-119.112 0/1:33:22,11:22:854:11:436:-29.6583,0,-67.2366 dDocent_Contig_2316 78 . G C 646.223 . AB=0.322581;ABP=28.4375;AC=3;AF=0.5;AN=6;AO=30;CIGAR=1X;DP=93;DPB=93;DPRA=0;EPP=68.1545;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1079;QR=2303;RO=63;RPL=30;RPP=68.1545;RPPR=139.813;RPR=0;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:16,9:16:579:9:341:-23.5204,0,-44.9164 0/1:33:18,15:18:671:15:518:-37.0054,0,-50.7878 0/1:35:29,6:29:1053:6:220:-9.61941,0,-84.5467 dDocent_Contig_2321 107 . N T 132.475 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=138;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:42:-3.9887,-0.60206,0 1/1:3:0,3:0:0:3:96:-8.95698,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_2322 178 . T C 451.144 . AB=0.333333;ABP=16.0391;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=72;DPB=72;DPRA=1.5;EPP=42.0968;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=713;QR=2140;RO=54;RPL=18;RPP=42.0968;RPPR=120.27;RPR=0;RUN=1;SAF=0;SAP=42.0968;SAR=18;SRF=0;SRP=120.27;SRR=54;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:14,8:14:546:8:320:-22.5441,0,-42.8573 0/1:32:22,10:22:871:10:393:-26.0932,0,-69.0634 0/0:18:18,0:18:723:0:0:0,-5.41854,-65.3955 dDocent_Contig_2323 46 . C T 486.104 . AB=0.223301;ABP=71.5066;AC=2;AF=0.333333;AN=6;AO=23;CIGAR=1X;DP=143;DPB=143;DPRA=1.2875;EPP=52.9542;EPPR=263.587;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=916;QR=4799;RO=120;RPL=0;RPP=52.9542;RPPR=263.587;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:40,0:40:1594:0:0:0,-12.0412,-143.688 0/1:33:27,6:27:1067:6:237:-11.7686,0,-86.3855 0/1:70:53,17:53:2138:17:679:-40.3647,0,-171.522 dDocent_Contig_2324 31 . A G 67.7883 . AB=0.142857;ABP=49.5419;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=105;DPB=105;DPRA=1.33333;EPP=16.0391;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.4848;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=3877;RO=99;RPL=0;RPP=16.0391;RPPR=217.986;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:697:0:0:0,-5.71957,-60.1369 0/1:42:36,6:36:1444:6:232:-8.60274,0,-117.567 0/0:44:44,0:44:1736:0:0:0,-13.2453,-156.463 dDocent_Contig_2326 92 . T C 965.541 . AB=0.43;ABP=7.26639;AC=3;AF=0.5;AN=6;AO=43;CIGAR=1X;DP=100;DPB=100;DPRA=0;EPP=96.3836;EPPR=124.613;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1456;QR=1964;RO=56;RPL=43;RPP=96.3836;RPPR=124.613;RPR=0;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:13,7:13:478:7:246:-16.3472,0,-37.2421 0/1:38:10,28:10:364:28:959:-75.1771,0,-21.6674 0/1:41:33,8:33:1122:8:251:-10.5528,0,-88.9385 dDocent_Contig_2327 19 . G A 19348.8 . AB=0.034657;ABP=2608.03;AC=0;AF=0;AN=6;AO=48;CIGAR=2X4M;DP=1385;DPB=1385;DPRA=0;EPP=107.241;EPPR=582.793;GTI=0;LEN=1;MEANALT=7.33333;MQM=54.625;MQMR=58.6966;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=0.692884;PAO=0;PQA=0;PQR=0;PRO=0;QA=1913;QR=10561;RO=267;RPL=0;RPP=107.241;RPPR=582.793;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=267;SRP=582.793;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:320:60,61,21,127,45:60:2376:61,21,127,45:2392,835,4968,1734:-388.806,-303.734,-480.795,-338.512,-430.806,-527.623,0,-92.3296,-127.091,-157.22,-267.579,-359.878,-394.658,-56.155,-449.467 0|0:540:120,136,13,224,40:120:4744:136,13,224,40:5302,515,8846,1556:-688.546,-498.338,-846.05,-682.42,-844.742,-1067.17,0,-162.385,-346.447,-321.268,-599.086,-761.412,-945.503,-263.111,-975.712 0|0:525:87,126,14,272,19:87:3441:126,14,272,19:4912,563,10842,727:-863.052,-695.409,-939.11,-842.975,-930.775,-1120.4,0,-87.8856,-235.411,-199.801,-830.924,-918.725,-1066.3,-223.359,-1106.84 dDocent_Contig_2328 98 . N A 83.9926 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=90;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:90:-8.39872,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_2329 29 . A T 7286.9 . AB=0.483168;ABP=4.25298;AC=3;AF=0.5;AN=6;AO=244;CIGAR=1X3M;DP=505;DPB=505;DPRA=0;EPP=278.681;EPPR=416.624;GTI=0;LEN=1;MEANALT=4.66667;MQM=59.8033;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.586066;PAIREDR=0.857143;PAO=0;PQA=0;PQR=0;PRO=0;QA=9693;QR=8283;RO=210;RPL=0;RPP=532.85;RPPR=459.02;RPR=244;RUN=1;SAF=210;SAP=278.681;SAR=34;SRF=205;SRP=416.624;SRR=5;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:165:74,12,77:74:2936:12,77:473,3057:-228.837,-212.198,-450.274,0,-202.773,-218.509 0|1:122:42,0,74:42:1616:0,74:0,2946:-229.924,-242.568,-375.219,0,-132.637,-110.361 0|1:218:94,22,93:94:3731:22,93:845,3690:-275.451,-234.581,-535.095,0,-237.979,-279.15 dDocent_Contig_2330 44 . T A 693.901 . AB=0.38806;ABP=10.3026;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X;DP=67;DPB=67;DPRA=0;EPP=59.4686;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1044;QR=1638;RO=41;RPL=0;RPP=59.4686;RPPR=92.0407;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:20,4:20:807:4:154:-7.00765,0,-65.7212 0/1:17:15,2:15:592:2:81:-2.56822,0,-48.4978 0/1:26:6,20:6:239:20:809:-65.2997,0,-14.058 dDocent_Contig_2331 11 . G A 921.109 . AB=0.313559;ABP=38.6372;AC=3;AF=0.5;AN=6;AO=37;CIGAR=1X;DP=118;DPB=118;DPRA=0;EPP=83.3548;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1468;QR=3221;RO=81;RPL=0;RPP=83.3548;RPPR=178.9;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:19,10:19:752:10:394:-27.0857,0,-59.2733 0/1:20:16,4:16:610:4:157:-8.48729,0,-49.206 0/1:69:46,23:46:1859:23:917:-62.0608,0,-146.738 dDocent_Contig_2332 12 . C T 523.353 . AB=0.116505;ABP=660.882;AC=1;AF=0.166667;AN=6;AO=85;CIGAR=1X;DP=1432;DPB=1432;DPRA=0;EPP=187.585;EPPR=2865.07;GTI=0;LEN=1;MEANALT=2;MQM=57.2118;MQMR=59.4308;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.133083;PAO=0;PQA=0;PQR=0;PRO=0;QA=3304;QR=52827;RO=1330;RPL=0;RPP=187.585;RPPR=2891.07;RPR=85;RUN=1;SAF=85;SAP=187.585;SAR=0;SRF=1327;SRP=2865.07;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:515:448,60:448:17751:60:2308:-53.8582,0,-1442.23 0/0:439:417,21:417:16496:21:836:0,-57.09,-1407.25 0/0:478:465,4:465:18580:4:160:0,-127.368,-1651.19 dDocent_Contig_2333 29 . G T 5295.52 . AB=0.886667;ABP=197.806;AC=4;AF=0.666667;AN=6;AO=162;CIGAR=1X;DP=179;DPB=179;DPRA=0;EPP=354.789;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6419;QR=670;RO=17;RPL=0;RPP=354.789;RPPR=39.9253;RPR=162;RUN=1;SAF=162;SAP=354.789;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:29:0,29:0:0:29:1139:-102.786,-8.72987,0 0/1:58:7,51:7:273:51:1999:-162.643,0,-7.47402 0/1:92:10,82:10:397:82:3281:-267.646,0,-8.39144 dDocent_Contig_2334 30 . A C 1874.28 . AB=0.0888889;ABP=69.0713;AC=0;AF=0;AN=6;AO=4;CIGAR=1X2M1X1M1X3M1X2M;DP=186;DPB=186;DPRA=0;EPP=11.6962;EPPR=100.727;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=0.625;PAO=0;PQA=0;PQR=0;PRO=0;QA=148;QR=3095;RO=80;RPL=0;RPP=11.6962;RPPR=176.728;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=70;SRP=100.727;SRR=10;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:45:20,4,0,14,4,0:20:773:4,0,14,4,0:148,0,544,156,0:-38.6835,-32.6034,-94.8853,-44.7041,-96.0894,-108.192,0,-51.388,-63.4895,-59.275,-31.931,-83.3166,-95.4186,-50.7163,-94.2145,-44.7041,-96.0894,-108.192,-63.4895,-95.4186,-108.192 0|0:78:35,0,5,30,0,2:35:1348:0,5,30,0,2:0,198,1198,0,75:-88.1182,-98.6542,-209.332,-82.3568,-193.034,-191.529,0,-110.686,-94.3875,-101.655,-98.6542,-209.332,-193.034,-110.686,-209.332,-92.6849,-203.362,-187.064,-104.716,-203.362,-202.76 0|0:63:25,0,4,23,0,4:25:974:0,4,23,0,4:0,159,901,0,163:-66.149,-73.6748,-153.723,-60.5827,-140.632,-139.427,0,-80.0482,-66.9563,-73.1245,-73.6748,-153.723,-140.632,-80.0482,-153.723,-60.2979,-140.347,-127.255,-66.6715,-140.347,-139.143 dDocent_Contig_2335 68 . G A 858.152 . AB=0.315315;ABP=35.8954;AC=3;AF=0.5;AN=6;AO=35;CIGAR=1X;DP=111;DPB=111;DPRA=0;EPP=79.0118;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.971429;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1374;QR=2966;RO=76;RPL=35;RPP=79.0118;RPPR=168.042;RPR=0;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:34,14:34:1336:14:541:-34.58,0,-106.053 0/1:29:26,3:26:991:3:122:-2.64262,0,-80.7464 0/1:34:16,18:16:639:18:711:-54.0837,0,-47.609 dDocent_Contig_2336 17 . A T 4231.29 . AB=0.744792;ABP=102.943;AC=3;AF=0.5;AN=6;AO=143;CIGAR=1X;DP=192;DPB=192;DPRA=0;EPP=313.531;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5397;QR=1930;RO=49;RPL=0;RPP=313.531;RPPR=109.412;RPR=143;RUN=1;SAF=143;SAP=313.531;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:17,32:17:671:32:1220:-95.3351,0,-45.9708 0/1:86:16,70:16:639:70:2626:-210.618,0,-31.9562 0/1:57:16,41:16:620:41:1551:-122.699,0,-38.961 dDocent_Contig_2337 18 . T A 118.46 . AB=0.105263;ABP=28.7251;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=2X2M1X3M2X2M2X1M1X4M;DP=55;DPB=54.95;DPRA=0.904762;EPP=7.35324;EPPR=81.9729;GTI=0;LEN=1;MEANALT=2;MQM=55;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.909091;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=1677;RO=44;RPL=0;RPP=7.35324;RPPR=98.5551;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=42;SRP=81.9729;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:15,2,2:15:576:2,2:80,76:-2.08494,0,-46.6839,-0.388511,-41.0644,-47.0544 0|1:15:10,5,0:10:371:5,0:192,0:-13.1346,0,-29.2205,-16.1449,-30.7256,-46.4911 0|0:21:19,1,0:19:730:1,0:30,0:0,-3.26101,-63.0763,-5.71957,-63.3773,-65.7724 dDocent_Contig_2338 120 . A C 40.6321 . AB=0.235294;ABP=13.3567;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=37;DPB=37;DPRA=1.7;EPP=11.6962;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=1081;RO=32;RPL=0;RPP=11.6962;RPPR=72.4974;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=72.4974;SRR=32;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:433:0:0:0,-3.91339,-39.2902 0/1:17:13,4:13:441:4:119:-5.88705,0,-34.8986 0/0:7:6,0:6:207:0:0:0,-1.80618,-18.859 dDocent_Contig_2340 55 . C T 602.019 . AB=0.280899;ABP=40.1205;AC=2;AF=0.333333;AN=6;AO=28;CIGAR=1X;DP=134;DPB=134;DPRA=0;EPP=63.8115;EPPR=233.186;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1120;QR=4054;RO=106;RPL=28;RPP=63.8115;RPPR=233.186;RPR=0;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:33,10:33:1267:10:396:-23.0547,0,-101.36 0/1:46:31,15:31:1201:15:602:-40.6701,0,-94.5327 0/0:45:42,3:42:1586:3:122:0,-2.17386,-131.602 dDocent_Contig_2341 98 . N T 1060.25 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=48;CIGAR=1X;DP=49;DPB=49;DPRA=0;EPP=107.241;EPPR=0;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1167;QR=0;RO=0;RPL=48;RPP=107.241;RPPR=0;RPR=0;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:19:0,18:0:0:18:444:-39.8812,-5.41854,0 1/1:22:0,22:0:0:22:522:-47.2064,-6.62266,0 1/1:8:0,8:0:0:8:201:-18.3352,-2.40824,0 dDocent_Contig_2342 107 . N T 920.256 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=31;CIGAR=1X;DP=31;DPB=31;DPRA=0;EPP=70.3259;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=37.7742;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1093;QR=0;RO=0;RPL=0;RPP=70.3259;RPPR=0;RPR=31;RUN=1;SAF=0;SAP=70.3259;SAR=31;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:214:-18.6221,-1.80618,0 1/1:19:0,19:0:0:19:665:-55.3158,-5.71957,0 1/1:6:0,6:0:0:6:214:-17.6105,-1.80618,0 dDocent_Contig_2343 106 . N T 831.03 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=29;CIGAR=2X;DP=29;DPB=29;DPRA=0;EPP=65.983;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=908;QR=0;RO=0;RPL=0;RPP=65.983;RPPR=0;RPR=29;RUN=1;SAF=0;SAP=65.983;SAR=29;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:6:0,6:0:0:6:193:-17.6869,-1.80618,0 1|1:6:0,6:0:0:6:170:-15.5801,-1.80618,0 1|1:17:0,17:0:0:17:545:-49.3588,-5.11751,0 dDocent_Contig_2351 8 . C T 22622.3 . AB=0.0813912;ABP=4248.03;AC=0;AF=0;AN=6;AO=227;CIGAR=2X;DP=2789;DPB=2799.5;DPRA=0;EPP=495.935;EPPR=1902.91;GTI=0;LEN=1;MEANALT=8;MQM=35.5859;MQMR=36.7696;NS=3;NUMALT=2;ODDS=0;PAIRED=0.969163;PAIREDR=0.402746;PAO=0;PQA=0;PQR=0;PRO=0;QA=8639;QR=49658;RO=1311;RPL=0;RPP=495.935;RPPR=2849.81;RPR=227;RUN=1;SAF=227;SAP=495.935;SAR=0;SRF=1191;SRP=1902.91;SRR=120;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:616:263,66,270:263:9912:66,270:2527,10360:-540.1,-458.627,-998.968,0,-399.563,-478.932 0|0:671:320,82,243:320:12105:82,243:3090,9268:-437.772,-312.565,-1039.05,0,-529.614,-677.996 0|0:1502:728,79,664:728:27641:79,664:3022,25616:-1289.88,-1299.65,-2958.65,0,-1473.4,-1482.88 dDocent_Contig_2359 3 . A G 97.5745 . AB=0;ABP=0;AC=2;AF=0.5;AN=4;AO=6;CIGAR=1X;DP=7;DPB=7;DPRA=6;EPP=16.0391;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1;MQM=18.3333;MQMR=18;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=180;QR=32;RO=1;RPL=0;RPP=16.0391;RPPR=5.18177;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=5.18177;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1,0:1:32:0:0:0,-0.30103,-1.78331 ./.:.:.:.:.:.:.:. 1/1:6:0,6:0:0:6:180:-9.75278,-1.80618,0 dDocent_Contig_2362 7 . T A 1426.7 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=47;CIGAR=1X;DP=48;DPB=48;DPRA=0;EPP=105.07;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1;MQM=38.7234;MQMR=15;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1706;QR=41;RO=1;RPL=0;RPP=105.07;RPPR=5.18177;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=1;SRP=5.18177;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:14:1,13:1:41:13:472:-39.437,-2.71548,0 1/1:15:0,15:0:0:15:545:-47.2579,-4.51545,0 1/1:19:0,19:0:0:19:689:-55.4983,-5.71957,0 dDocent_Contig_2371 114 . A T 1375.31 . AB=0.683544;ABP=26.1269;AC=3;AF=0.5;AN=6;AO=54;CIGAR=1X;DP=79;DPB=79;DPRA=0;EPP=120.27;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1843;QR=829;RO=25;RPL=0;RPP=120.27;RPPR=57.2971;RPR=54;RUN=1;SAF=0;SAP=120.27;SAR=54;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:7,17:7:207:17:576:-44.9363,0,-11.6946 0/1:27:11,16:11:380:16:555:-42.1502,0,-26.4052 0/1:28:7,21:7:242:21:712:-55.9673,0,-13.6889 dDocent_Contig_2372 36 . G A 68.3933 . AB=0.333333;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=25;DPB=25;DPRA=1.125;EPP=9.52472;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=882;RO=22;RPL=0;RPP=9.52472;RPPR=50.7827;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:279:0:0:0,-2.10721,-25.478 0/1:9:6,3:6:235:3:122:-8.66322,0,-18.8109 0/0:9:9,0:9:368:0:0:0,-2.70927,-33.4854 dDocent_Contig_2373 18 . G C 63240.6 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=1806;CIGAR=1X;DP=1833;DPB=1833;DPRA=0;EPP=3924.69;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=71284;QR=949;RO=25;RPL=0;RPP=3924.69;RPPR=57.2971;RPR=1806;RUN=1;SAF=1806;SAP=3924.69;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:734:7,727:7:278:727:28685:-2553.95,-195.566,0 1/1:464:3,460:3:91:460:18059:-1615.48,-131.276,0 1/1:635:15,619:15:580:619:24540:-2154.03,-138.716,0 dDocent_Contig_2374 11 . T C 129.72 . AB=0.189189;ABP=34.0565;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=117;DPB=117;DPRA=0.925;EPP=18.2106;EPPR=241.872;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=284;QR=4258;RO=110;RPL=0;RPP=18.2106;RPPR=241.872;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=110;SRP=241.872;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:53:53,0:53:2050:0:0:0,-15.9546,-184.71 0/0:27:27,0:27:1031:0:0:0,-8.12781,-93.0919 0/1:37:30,7:30:1177:7:284:-14.7959,0,-95.0778 dDocent_Contig_2375 7 . A G 5994.93 . AB=0.564103;ABP=18.322;AC=3;AF=0.5;AN=6;AO=242;CIGAR=1X;DP=429;DPB=429;DPRA=0;EPP=528.507;EPPR=389.532;GTI=0;LEN=1;MEANALT=1.66667;MQM=57.3678;MQMR=59.3258;NS=3;NUMALT=1;ODDS=0;PAIRED=0.991736;PAIREDR=0.988764;PAO=0;PQA=0;PQR=0;PRO=0;QA=8193;QR=6762;RO=178;RPL=0;RPP=528.507;RPPR=389.532;RPR=242;RUN=1;SAF=242;SAP=528.507;SAR=0;SRF=178;SRP=389.532;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:133:44,89:44:1660:89:3151:-241.817,0,-106.013 0/1:87:40,46:40:1502:46:1627:-116.81,0,-109.191 0/1:209:94,107:94:3600:107:3415:-246.388,0,-263.301 dDocent_Contig_2376 41 . C T 202.052 . AB=0.2;ABP=42.0968;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=108;DPB=108;DPRA=1.72414;EPP=24.725;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=408;QR=3895;RO=98;RPL=0;RPP=24.725;RPPR=215.815;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1323:0:0:0,-9.93399,-119.334 0/0:25:25,0:25:1006:0:0:0,-7.52575,-90.8348 0/1:50:40,10:40:1566:10:408:-22.0291,0,-126.124 dDocent_Contig_2377 51 . T A 1044.71 . AB=0.264368;ABP=86.924;AC=3;AF=0.5;AN=6;AO=46;CIGAR=1X;DP=174;DPB=174;DPRA=0;EPP=102.898;EPPR=280.959;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1793;QR=5098;RO=128;RPL=46;RPP=102.898;RPPR=280.959;RPR=0;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=128;SRP=280.959;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:39,16:39:1562:16:613:-38.9444,0,-124.261 0/1:61:40,21:40:1567:21:824:-56.1098,0,-122.906 0/1:58:49,9:49:1969:9:356:-14.9401,0,-159.945 dDocent_Contig_2380 16 . G A 1207.83 . AB=0.126316;ABP=118.235;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X2M;DP=141;DPB=141;DPRA=0;EPP=29.068;EPPR=191.928;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=461;QR=3436;RO=87;RPL=0;RPP=29.068;RPPR=191.928;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:53:36,5,11:36:1411:5,11:192,420:-23.6463,-18.7153,-133.262,0,-100.314,-112.763 0|1:46:27,19,0:27:1066:19,0:743,0:-53.3419,0,-82.3873,-61.4697,-88.1069,-149.184 0|1:42:24,17,1:24:959:17,1:686,41:-49.3178,0,-73.8596,-53.158,-75.5926,-131.842 dDocent_Contig_2382 8 . C T 3545 . AB=0.262097;ABP=246.846;AC=2;AF=0.333333;AN=6;AO=130;CIGAR=1X1M1X;DP=496;DPB=496;DPRA=0;EPP=285.302;EPPR=576.279;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4961;QR=10105;RO=264;RPL=0;RPP=285.302;RPPR=576.279;RPR=130;RUN=1;SAF=130;SAP=285.302;SAR=0;SRF=264;SRP=576.279;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:187:99,49,37:99:3780:49,37:1872,1464:-123.79,0,-295.373,-33.1048,-189.638,-332.099 0|0:120:61,25,34:61:2318:25,34:949,1341:-91.9694,-32.518,-215.082,0,-112.279,-179.864 0|1:189:104,56,28:104:4007:56,28:2140,1137:-144.264,0,-312.148,-81.7912,-235.229,-402.386 dDocent_Contig_2385 12 . A G 125.381 . AB=0.170213;ABP=47.41;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=66;DPB=66;DPRA=1.23684;EPP=20.3821;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=327;QR=2283;RO=58;RPL=0;RPP=20.3821;RPPR=128.956;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:31,6:31:1220:6:245:-11.2914,0,-98.9418 0/1:10:8,2:8:308:2:82:-4.76938,0,-25.0653 0/0:19:19,0:19:755:0:0:0,-5.71957,-68.2716 dDocent_Contig_2387 81 . C A 100.293 . AB=0.333333;ABP=6.62942;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=48;DPB=48;DPRA=0.909091;EPP=13.8677;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.976744;PAO=0;PQA=0;PQR=0;PRO=0;QA=178;QR=1507;RO=43;RPL=5;RPP=13.8677;RPPR=96.3836;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:561:0:0:0,-4.81648,-50.8192 0/1:15:10,5:10:355:5:178:-11.8532,0,-27.7751 0/0:17:17,0:17:591:0:0:0,-5.11751,-53.5174 dDocent_Contig_2388 12 . T C 2989.97 . AB=0.083682;ABP=362.811;AC=0;AF=0;AN=6;AO=20;CIGAR=1X3M1X5M;DP=239;DPB=239;DPRA=0;EPP=46.4397;EPPR=72.4974;GTI=0;LEN=1;MEANALT=6.66667;MQM=60;MQMR=60;NS=3;NUMALT=6;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=787;QR=1249;RO=32;RPL=0;RPP=46.4397;RPPR=72.4974;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:58:15,11,0,5,1,4,22:15:583:11,0,5,1,4,22:425,0,197,40,158,894:-69.2302,-38.8439,-83.4362,-73.7456,-86.7475,-121.651,-57.5388,-70.5406,-105.444,-103.939,-70.4505,-83.4524,-118.356,-102.149,-118.055,-60.7444,-73.7463,-108.65,-92.4425,-105.355,-107.446,0,-13.0029,-47.9074,-31.6992,-44.612,-34.9051,-41.2847 0|0:83:11,26,5,4,7,20,8:11:430:26,5,4,7,20,8:991,192,157,275,774,321:-106.195,-28.2244,-55.7509,-93.7456,-47.8174,-127.594,-96.5933,-50.6649,-116.186,-130.743,-86.887,-40.9586,-106.48,-109.328,-120.133,-45.927,0,-65.5203,-68.3679,-58.6615,-75.2602,-83.0555,-37.1268,-102.649,-105.496,-95.79,-54.8298,-116.001 0|0:98:6,18,0,11,15,20,26:6:236:18,0,11,15,20,26:691,0,433,597,780,1046:-129.094,-74.1881,-88.1828,-130.9,-93.6014,-150.314,-95.2801,-57.9813,-114.694,-111.382,-81.7431,-44.4443,-101.157,-65.5361,-96.6411,-66.7898,-29.4917,-86.2032,-50.583,-37.0459,-80.1826,-44.6976,-7.39889,-64.1113,-28.4904,-14.9529,0,-56.2845 dDocent_Contig_2390 177 . T G 221.34 . AB=0.344828;ABP=9.07545;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=49;DPB=49;DPRA=0;EPP=26.8965;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=415;QR=1485;RO=38;RPL=11;RPP=26.8965;RPPR=85.5263;RPR=0;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=85.5263;SRR=38;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:10,7:10:395:7:254:-18.0815,0,-30.7897 0/1:12:9,3:9:354:3:120:-7.57533,0,-28.6057 0/0:20:19,1:19:736:1:41:0,-1.92603,-62.4636 dDocent_Contig_2391 62 . T C 52.4187 . AB=0.214286;ABP=12.937;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=78;DPB=78;DPRA=0.4375;EPP=9.52472;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=2257;RO=75;RPL=3;RPP=9.52472;RPPR=165.871;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:48:48,0:48:1371:0:0:0,-14.4494,-123.65 0/1:14:11,3:11:338:3:121:-7.06578,0,-26.504 0/0:16:16,0:16:548:0:0:0,-4.81648,-49.6399 dDocent_Contig_2392 66 . G T 950.2 . AB=0.522388;ABP=3.30199;AC=3;AF=0.5;AN=6;AO=35;CIGAR=1X;DP=67;DPB=67;DPRA=0;EPP=79.0118;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1330;QR=1265;RO=32;RPL=35;RPP=79.0118;RPPR=72.4974;RPR=0;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:11,19:11:429:19:742:-58.0727,0,-29.9295 0/1:23:14,9:14:554:9:310:-21.2944,0,-43.2746 0/1:14:7,7:7:282:7:278:-21.1757,0,-21.5387 dDocent_Contig_2393 12 . G A 122.317 . AB=0.0727273;ABP=90.2245;AC=0;AF=0;AN=6;AO=4;CIGAR=1X2M1X;DP=150;DPB=150;DPRA=1.15789;EPP=3.0103;EPPR=258.117;GTI=0;LEN=1;MEANALT=2;MQM=32;MQMR=59.3985;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.142857;PAO=0;PQA=0;PQR=0;PRO=0;QA=152;QR=5195;RO=133;RPL=0;RPP=11.6962;RPPR=291.816;RPR=4;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=129;SRP=258.117;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:47:44,0,3:44:1701:0,3:0,120:0,-13.2453,-152.369,-2.96051,-142.483,-141.579 0|0:55:42,4,9:42:1648:4,9:152,359:-14.0556,-16.7526,-151.103,0,-125.65,-132.896 0|0:48:47,0,1:47:1846:0,1:0,41:0,-14.1484,-165.948,-10.3549,-162.564,-162.263 dDocent_Contig_2394 8 . T A 57.5894 . AB=0;ABP=0;AC=0;AF=0;AN=6;AO=4;CIGAR=1X1M1X;DP=228;DPB=228;DPRA=0.695652;EPP=11.6962;EPPR=467.705;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.995327;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=8152;RO=214;RPL=0;RPP=11.6962;RPPR=467.705;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=214;SRP=467.705;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:92:90,0,2:90:3424:0,2:0,80:0,-27.0927,-307.905,-20.1032,-301.315,-300.712 0|0:64:60,4,0:60:2287:4,0:155,0:0,-4.94048,-191.728,-18.0618,-192.932,-205.667 0|0:72:64,0,8:64:2441:0,8:0,321:-7.58284,-26.8488,-227.077,0,-200.627,-198.218 dDocent_Contig_2395 14 . C A 682.531 . AB=0.311111;ABP=30.9017;AC=3;AF=0.5;AN=6;AO=28;CIGAR=2X;DP=90;DPB=90;DPRA=0;EPP=63.8115;EPPR=135.47;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.918033;PAO=0;PQA=0;PQR=0;PRO=0;QA=1107;QR=2387;RO=61;RPL=0;RPP=63.8115;RPPR=135.47;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:38:30,7:30:1179:7:274:-13.7446,0,-95.1349 0|1:13:6,7:6:225:7:282:-21.839,0,-16.6948 0|1:39:25,14:25:983:14:551:-38.1925,0,-77.0306 dDocent_Contig_2396 11 . A G 13832.2 . AB=0.0478036;ABP=1377.72;AC=0;AF=0;AN=6;AO=37;CIGAR=1X3M1X;DP=774;DPB=774;DPRA=0;EPP=83.3548;EPPR=383.018;GTI=0;LEN=1;MEANALT=8.66667;MQM=60;MQMR=59.92;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.965714;PAO=0;PQA=0;PQR=0;PRO=0;QA=1409;QR=6317;RO=175;RPL=0;RPP=83.3548;RPPR=383.018;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=175;SRP=383.018;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:284:65,10,164,31:65:2389:10,164,31:381,6242,1165:-490.906,-479.22,-671.473,0,-164.007,-145.892,-415.036,-579.046,-99.8222,-600.967 0|0:216:55,8,129,12:55:1993:8,129,12:302,4875,459:-380.981,-372.785,-533.069,0,-137.932,-123.852,-359.872,-497.812,-125.017,-518.952 0|0:274:55,19,170,19:55:1935:19,170,19:726,6511,708:-516.854,-473.841,-625.605,0,-97.9073,-106.307,-475.463,-573.377,-99.5307,-627.227 dDocent_Contig_2399 149 . T A 145.341 . AB=0.233333;ABP=21.5402;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=109;DPB=109;DPRA=0.759494;EPP=18.2106;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=4068;RO=102;RPL=0;RPP=18.2106;RPPR=224.5;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=224.5;SRR=102;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:40,0:40:1581:0:0:0,-12.0412,-142.531 0/1:30:23,7:23:913:7:278:-16.358,0,-73.4494 0/0:39:39,0:39:1574:0:0:0,-11.7402,-141.89 dDocent_Contig_2400 107 . N G 57.863 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=62;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:62:-5.78576,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_2401 23 . A T 64.023 . AB=0.166667;ABP=26.1727;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=104;DPB=104;DPRA=0.6;EPP=11.6962;EPPR=220.158;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=3992;RO=100;RPL=0;RPP=11.6962;RPPR=220.158;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:20,4:20:802:4:164:-7.92518,0,-65.2734 0/0:29:29,0:29:1153:0:0:0,-8.72987,-104.051 0/0:51:51,0:51:2037:0:0:0,-15.3525,-183.521 dDocent_Contig_2402 29 . A T 1133.56 . AB=0.367521;ABP=20.8461;AC=2;AF=0.333333;AN=6;AO=45;CIGAR=1X2M1X;DP=157;DPB=157;DPRA=0;EPP=100.727;EPPR=244.044;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1764;QR=4361;RO=111;RPL=0;RPP=100.727;RPPR=244.044;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=111;SRP=244.044;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:77:49,28:49:1905:28:1089:-75.1234,0,-148.491 0|1:40:25,15:25:994:15:594:-41.755,0,-77.7199 0|0:40:37,2:37:1462:2:81:0,-4.46224,-124.147 dDocent_Contig_2403 49 . C G 478.529 . AB=0.183673;ABP=130.773;AC=2;AF=0.333333;AN=6;AO=31;CIGAR=1X;DP=246;DPB=246;DPRA=0;EPP=70.3259;EPPR=419.216;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.7116;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.855814;PAO=0;PQA=0;PQR=0;PRO=0;QA=1214;QR=8553;RO=215;RPL=0;RPP=70.3259;RPPR=348.678;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=206;SRP=394.976;SRR=9;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:99:95,4:95:3788:4:159:0,-15.1105,-326.229 0/1:56:49,7:49:1917:7:269:-7.71421,0,-155.878 0/1:91:71,20:71:2848:20:786:-43.6616,0,-228.303 dDocent_Contig_2404 145 . T C 211.222 . AB=0.310345;ABP=12.0706;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=78;DPB=78;DPRA=1.18367;EPP=22.5536;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=348;QR=2754;RO=69;RPL=0;RPP=22.5536;RPPR=152.842;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=152.842;SRR=69;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:400:0:0:0,-3.0103,-36.3589 0/1:29:20,9:20:799:9:348:-22.9461,0,-63.4944 0/0:39:39,0:39:1555:0:0:0,-11.7402,-140.189 dDocent_Contig_2405 45 . T G 3613.08 . AB=0.680328;ABP=37.4691;AC=4;AF=0.666667;AN=6;AO=117;CIGAR=1X;DP=159;DPB=159;DPRA=0;EPP=257.073;EPPR=85.7331;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.97619;PAO=0;PQA=0;PQR=0;PRO=0;QA=4576;QR=1639;RO=42;RPL=0;RPP=257.073;RPPR=85.7331;RPR=117;RUN=1;SAF=117;SAP=257.073;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:37:3,34:3:118:34:1288:-105.187,-0.135906,0 0/1:33:15,18:15:562:18:697:-53.1176,0,-40.9651 0/1:89:24,65:24:959:65:2591:-206.525,0,-59.8185 dDocent_Contig_2406 150 . T C 218.434 . AB=0.30303;ABP=14.1309;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=60;DPB=60;DPRA=0.611111;EPP=24.725;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=384;QR=1889;RO=50;RPL=0;RPP=24.725;RPPR=111.584;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=111.584;SRR=50;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:12,4:12:466:4:154:-9.41711,0,-37.4754 0/1:17:11,6:11:420:6:230:-15.9491,0,-33.0348 0/0:27:27,0:27:1003:0:0:0,-8.12781,-90.5727 dDocent_Contig_2407 24 . G A 118.339 . AB=0.24;ABP=17.6895;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=147;DPB=147;DPRA=0.725;EPP=22.5536;EPPR=302.673;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=348;QR=5461;RO=138;RPL=0;RPP=22.5536;RPPR=302.673;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=138;SRP=302.673;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:19,6:19:739:6:228:-13.3567,0,-59.3066 0/0:60:60,0:60:2369:0:0:0,-18.0618,-213.377 0/0:62:59,3:59:2353:3:120:0,-7.47617,-200.733 dDocent_Contig_2410 98 . N C 170.826 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=173;QR=0;RO=0;RPL=5;RPP=13.8677;RPPR=0;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 dDocent_Contig_2411 35 . A C 501.302 . AB=0.203252;ABP=97.0898;AC=2;AF=0.333333;AN=6;AO=25;CIGAR=2M1X12M;DP=123;DPB=126.733;DPRA=0;EPP=57.2971;EPPR=183.243;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.88;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=963;QR=3207;RO=83;RPL=0;RPP=57.2971;RPPR=183.243;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:30:17,4,4,4:17:662:4,4,4:118,162,148:-8.26073,-3.99452,-57.2007,0,-45.0437,-53.238,-1.26697,-46.3015,-42.3358,-54.4949 0|1:55:41,0,0,12:41:1582:0,0,12:0,0,459:-25.5768,-37.919,-167.87,-37.919,-167.87,-167.87,0,-130.203,-130.203,-126.591 0|1:38:25,4,0,9:25:963:4,0,9:138,0,356:-21.8078,-18.1376,-95.9912,-29.3336,-97.1954,-108.402,0,-67.8939,-79.0998,-76.3905 dDocent_Contig_2412 8 . T A 889.137 . AB=0.0961538;ABP=76.6733;AC=0;AF=0;AN=6;AO=5;CIGAR=3X1M1X4M1X3M;DP=146;DPB=151.692;DPRA=0;EPP=13.8677;EPPR=137.642;GTI=0;LEN=1;MEANALT=6;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=196;QR=2399;RO=62;RPL=0;RPP=13.8677;RPPR=137.642;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:47:24,0,8,10,0,2:24:933:0,8,10,0,2:0,310,376,0,78:-23.3989,-30.6236,-107.296,-5.15548,-81.8295,-79.4212,0,-76.6682,-51.2027,-73.6579,-30.6236,-107.296,-81.8295,-76.6682,-107.296,-24.2114,-100.884,-75.4177,-70.2566,-100.884,-100.282 0|0:52:16,5,4,20,5,0:16:617:5,4,20,5,0:196,159,704,202,0:-52.4559,-41.1508,-90.315,-44.179,-78.7278,-93.6441,0,-34.5395,-37.5669,-44.6375,-40.6139,-75.1633,-78.1914,-34.0023,-89.7788,-57.2724,-91.8202,-94.8483,-50.6581,-91.2839,-107.94 0|0:47:22,0,8,4,3,8:22:849:0,8,4,3,8:0,307,156,120,291:-18.5766,-25.1993,-94.922,0,-69.724,-67.3158,-12.374,-82.0979,-56.8997,-80.8938,-15.3114,-85.0356,-59.8374,-72.2113,-84.1326,-1.44724,-71.1659,-45.9689,-58.3421,-61.2796,-68.7577 dDocent_Contig_2413 72 . G A 124.906 . AB=0.209302;ABP=34.5724;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=128;DPB=128;DPRA=1.01176;EPP=22.5536;EPPR=261.416;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.991597;PAO=0;PQA=0;PQR=0;PRO=0;QA=296;QR=4213;RO=119;RPL=9;RPP=22.5536;RPPR=261.416;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=119;SRP=261.416;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:34,9:34:1161:9:296:-14.0135,0,-91.8336 0/0:48:48,0:48:1731:0:0:0,-14.4494,-156.05 0/0:37:37,0:37:1321:0:0:0,-11.1381,-119.174 dDocent_Contig_2414 54 . T C 525.165 . AB=0.242424;ABP=60.0608;AC=2;AF=0.333333;AN=6;AO=27;CIGAR=1X;DP=170;DPB=170;DPRA=0;EPP=61.6401;EPPR=313.531;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.962963;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1062;QR=5704;RO=143;RPL=23;RPP=32.0437;RPPR=313.531;RPR=4;RUN=1;SAF=23;SAP=32.0437;SAR=4;SRF=143;SRP=313.531;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:71:68,3:68:2727:3:116:0,-10.5568,-234.732 0/1:71:51,20:51:2014:20:782:-49.3183,0,-160.081 0/1:28:24,4:24:963:4:164:-6.72106,0,-78.5392 dDocent_Contig_2415 11 . A C 156.149 . AB=0.11284;ABP=337.611;AC=2;AF=0.333333;AN=6;AO=31;CIGAR=1X;DP=380;DPB=380;DPRA=0;EPP=61.9202;EPPR=732.651;GTI=0;LEN=1;MEANALT=2.33333;MQM=50.129;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.483871;PAIREDR=0.576471;PAO=0;PQA=0;PQR=0;PRO=0;QA=1219;QR=13521;RO=340;RPL=0;RPP=70.3259;RPPR=741.311;RPR=31;RUN=1;SAF=30;SAP=61.9202;SAR=1;SRF=339;SRP=732.651;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:123:121,2:121:4776:2:77:0,-29.7175,-422.452 0/1:158:132,21:132:5262:21:822:-17.4368,0,-427.002 0/1:99:87,8:87:3483:8:320:-0.163666,0,-284.491 dDocent_Contig_2416 98 . N C 96.8985 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=97;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1/1:2:0,2:0:0:2:62:-5.88849,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_2418 144 . C A 77.4514 . AB=0.146341;ABP=47.552;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=125;DPB=125;DPRA=0.97619;EPP=16.0391;EPPR=261.416;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=236;QR=4613;RO=119;RPL=0;RPP=16.0391;RPPR=261.416;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=261.416;SRR=119;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:35,6:35:1353:6:236:-9.26802,0,-109.685 0/0:36:36,0:36:1393:0:0:0,-10.8371,-125.63 0/0:48:48,0:48:1867:0:0:0,-14.4494,-168.242 dDocent_Contig_2419 120 . A C 92.7931 . AB=0.25;ABP=16.0391;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=86;DPB=86;DPRA=0.774194;EPP=16.0391;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.225;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.45;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=2663;RO=80;RPL=0;RPP=16.0391;RPPR=176.728;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=176.728;SRR=80;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:929:0:0:0,-8.42884,-82.7945 0/0:34:34,0:34:1116:0:0:0,-10.235,-100.736 0/1:24:18,6:18:618:6:200:-11.1032,0,-48.7187 dDocent_Contig_2421 55 . T A 57.35 . AB=0.151515;ABP=37.8197;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1M1D1M1X;DP=93;DPB=91.5;DPRA=1.05;EPP=16.0391;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=220;QR=3369;RO=87;RPL=6;RPP=16.0391;RPPR=191.928;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:33:28,5:28:1077:5:187:-7.25788,0,-87.2941 0|0:30:29,1:29:1112:1:33:0,-5.73176,-97.0694 0|0:30:30,0:30:1180:0:0:0,-9.0309,-106.485 dDocent_Contig_2422 19 . T A 706.319 . AB=0.321839;ABP=26.9963;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X;DP=87;DPB=87;DPRA=0;EPP=63.8115;EPPR=128.956;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1125;QR=2335;RO=58;RPL=0;RPP=63.8115;RPPR=128.956;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:16,16:16:649:16:643:-48.572,0,-49.1105 0/1:23:20,3:20:810:3:115:-3.80079,0,-66.2921 0/1:32:22,9:22:876:9:367:-23.7796,0,-69.5386 dDocent_Contig_2424 15 . A G 36.8959 . 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AB=0.186047;ABP=39.8243;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=64;DPB=64;DPRA=1.02381;EPP=20.3821;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=289;QR=1998;RO=56;RPL=8;RPP=20.3821;RPPR=124.613;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:18,4:18:635:4:146:-6.87505,0,-50.8517 0/0:21:21,0:21:759:0:0:0,-6.32163,-68.6353 0/1:21:17,4:17:604:4:143:-6.89982,0,-48.3692 dDocent_Contig_2431 42 . C T 66.6736 . 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A C 39.1981 . AB=0.0956522;ABP=166.324;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X1M1X1M;DP=195;DPB=193.75;DPRA=0;EPP=33.4109;EPPR=213.918;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=59.908;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.873563;PAO=0;PQA=0;PQR=0;PRO=0;QA=565;QR=6774;RO=174;RPL=0;RPP=33.4109;RPPR=380.846;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=152;SRP=213.918;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:80:76,3,0:76:2930:3,0:123,0:0,-12.7037,-252.373,-22.8783,-253.277,-263.43 0|1:54:49,5,0:49:1917:5,0:199,0:-2.03274,0,-156.499,-16.7832,-158.004,-174.391 0|1:61:49,6,5:49:1927:6,5:243,202:-5.29281,0,-156.698,-3.38644,-141.85,-160.383 dDocent_Contig_2445 161 . G T 32.2783 . 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AB=0.319209;ABP=103.511;AC=3;AF=0.5;AN=6;AO=113;CIGAR=1X;DP=354;DPB=354;DPRA=0;EPP=248.387;EPPR=524.164;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.99115;PAIREDR=0.954167;PAO=0;PQA=0;PQR=0;PRO=0;QA=4279;QR=9197;RO=240;RPL=0;RPP=248.387;RPPR=524.164;RPR=113;RUN=1;SAF=113;SAP=248.387;SAR=0;SRF=240;SRP=524.164;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:131:69,62:69:2648:62:2335:-170.933,0,-199.077 0/1:111:90,21:90:3421:21:796:-38.5504,0,-274.616 0/1:112:81,30:81:3128:30:1148:-69.8072,0,-247.855 dDocent_Contig_2447 14 . G A 4854.53 . AB=0.754967;ABP=88.2729;AC=4;AF=0.666667;AN=6;AO=152;CIGAR=1X;DP=191;DPB=191;DPRA=0;EPP=333.074;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6018;QR=1540;RO=39;RPL=0;RPP=333.074;RPPR=87.6977;RPR=152;RUN=1;SAF=152;SAP=333.074;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:10,55:10:380:55:2168:-175.739,0,-14.9807 0/1:86:27,59:27:1078:59:2346:-185.414,0,-71.413 1/1:40:2,38:2:82:38:1504:-127.822,-4.26152,0 dDocent_Contig_2448 123 . C T 464.678 . AB=0.403846;ABP=7.18621;AC=1;AF=0.166667;AN=6;AO=21;CIGAR=1X;DP=162;DPB=162;DPRA=0.945455;EPP=48.6112;EPPR=309.188;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=707;QR=4699;RO=141;RPL=0;RPP=48.6112;RPPR=309.188;RPR=21;RUN=1;SAF=0;SAP=48.6112;SAR=21;SRF=0;SRP=309.188;SRR=141;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:68:68,0:68:2238:0:0:0,-20.47,-201.685 0/0:42:42,0:42:1384:0:0:0,-12.6433,-124.849 0/1:52:31,21:31:1077:21:707:-48.2917,0,-81.5871 dDocent_Contig_2449 57 . G T 53.0103 . AB=0.12766;ABP=59.6072;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=110;DPB=110;DPRA=1.49206;EPP=16.0391;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=229;QR=4034;RO=104;RPL=6;RPP=16.0391;RPPR=228.843;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:41,6:41:1574:6:229:-6.8239,0,-127.761 0/0:45:45,0:45:1755:0:0:0,-13.5463,-158.178 0/0:18:18,0:18:705:0:0:0,-5.41854,-63.7726 dDocent_Contig_2450 24 . C T 154.519 . AB=0.164384;ABP=74.4309;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=133;DPB=133;DPRA=0.608333;EPP=29.068;EPPR=265.758;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=447;QR=4733;RO=121;RPL=0;RPP=29.068;RPPR=265.758;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=121;SRP=265.758;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:60:60,0:60:2333:0:0:0,-18.0618,-210.146 0/1:33:28,5:28:1123:5:191:-7.62467,0,-91.4196 0/1:40:33,7:33:1277:7:256:-11.3501,0,-103.161 dDocent_Contig_2451 26 . T A 134.96 . AB=0.173913;ABP=45.4956;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=126;DPB=126;DPRA=1.15;EPP=20.3821;EPPR=259.244;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=320;QR=4689;RO=118;RPL=0;RPP=20.3821;RPPR=259.244;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=118;SRP=259.244;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:40,0:40:1597:0:0:0,-12.0412,-143.964 0/1:46:38,8:38:1493:8:320:-15.3199,0,-120.768 0/0:40:40,0:40:1599:0:0:0,-12.0412,-144.139 dDocent_Contig_2452 19 . C T 43585.5 . AB=0;ABP=0;AC=0;AF=0;AN=6;AO=63;CIGAR=1X1M1X1M;DP=1485;DPB=1485;DPRA=0;EPP=139.813;EPPR=89.8692;GTI=0;LEN=1;MEANALT=7;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=1.11022e-16;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2498;QR=1589;RO=40;RPL=0;RPP=139.813;RPPR=89.8692;RPR=63;RUN=1;SAF=63;SAP=139.813;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:517:14,27,35,424:14:554:27,35,424:1061,1384,16756:-1456.59,-1373.54,-1411.01,-1346.92,-1305.25,-1381.97,-82.0408,-40.3706,-13.7434,0 0|0:314:10,15,15,264:10:396:15,15,264:596,588,10569:-914.543,-868.486,-896.562,-869.22,-852.745,-897.297,-46.875,-30.3959,-31.1326,0 0|0:654:16,21,38,567:16:639:21,38,567:841,1526,22741:-1986.81,-1922.34,-1968.65,-1865.89,-1849.23,-1907.08,-118.055,-101.401,-44.9413,0 dDocent_Contig_2453 110 . T G 137.214 . AB=0.230769;ABP=27.5646;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=64;DPB=64;DPRA=0.78;EPP=22.5536;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=314;QR=1880;RO=55;RPL=0;RPP=22.5536;RPPR=122.441;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=122.441;SRR=55;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:21,3:21:721:3:105:-2.57144,0,-57.9854 0/1:15:9,6:9:297:6:209:-14.6356,0,-22.5362 0/0:25:25,0:25:862:0:0:0,-7.52575,-77.8964 dDocent_Contig_2454 16 . C G 44.2411 . AB=0.333333;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=2X;DP=20;DPB=20;DPRA=1.63636;EPP=9.52472;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=96;QR=687;RO=17;RPL=0;RPP=9.52472;RPPR=39.9253;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:6:6,0:6:245:0:0:0,-1.80618,-22.4295 0|1:9:6,3:6:240:3:96:-6.24794,0,-19.2664 0|0:5:5,0:5:202:0:0:0,-1.50515,-18.5621 dDocent_Contig_2455 10 . T C 121.048 . AB=0.25;ABP=16.0391;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=32;DPB=32;DPRA=1.5;EPP=16.0391;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.923077;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=1010;RO=26;RPL=0;RPP=16.0391;RPPR=59.4686;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:11,5:11:415:5:200:-13.5626,0,-32.8766 0/0:8:8,0:8:317:0:0:0,-2.40824,-28.8959 0/1:8:7,1:7:278:1:41:-1.68633,0,-22.9814 dDocent_Contig_2457 30 . G A 38.9635 . AB=0.109091;ABP=76.0113;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=126;DPB=126;DPRA=1.5493;EPP=16.0391;EPPR=263.587;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=4642;RO=120;RPL=0;RPP=16.0391;RPPR=263.587;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:49,6:49:1901:6:240:-5.41917,0,-154.743 0/0:36:36,0:36:1393:0:0:0,-10.8371,-125.627 0/0:35:35,0:35:1348:0:0:0,-10.536,-121.577 dDocent_Contig_2459 16 . C T 154.225 . AB=0.266667;ABP=17.1973;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=60;DPB=60;DPRA=0;EPP=24.725;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=369;QR=1978;RO=50;RPL=0;RPP=24.725;RPPR=111.584;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:28,2:28:1089:2:66:0,-2.76259,-92.0274 0/1:10:8,2:8:321:2:65:-3.16273,0,-26.248 0/1:20:14,6:14:568:6:238:-15.7728,0,-45.4405 dDocent_Contig_2463 135 . A T 103.822 . AB=0.416667;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=28;DPB=28;DPRA=1.5;EPP=13.8677;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=172;QR=764;RO=23;RPL=0;RPP=13.8677;RPPR=52.9542;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:301:0:0:0,-2.70927,-27.4149 0/0:7:7,0:7:221:0:0:0,-2.10721,-20.1997 0/1:12:7,5:7:242:5:172:-12.2061,0,-18.5054 dDocent_Contig_2464 14 . T C 36.2039 . AB=0.142857;ABP=26.2761;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1M1D1M2X;DP=40;DPB=39.4;DPRA=2.21053;EPP=9.52472;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=1310;RO=37;RPL=0;RPP=9.52472;RPPR=83.3548;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:21:18,3:18:640:3:123:-5.14316,0,-51.6063 0|0:9:9,0:9:321:0:0:0,-2.70927,-29.2319 0|0:10:10,0:10:349:0:0:0,-3.0103,-31.7421 dDocent_Contig_2467 14 . A G 1145.89 . AB=0.547945;ABP=4.46786;AC=3;AF=0.5;AN=6;AO=40;CIGAR=1X4M;DP=73;DPB=73;DPRA=0;EPP=89.8692;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.975;PAIREDR=0.935484;PAO=0;PQA=0;PQR=0;PRO=0;QA=1565;QR=1223;RO=31;RPL=0;RPP=89.8692;RPPR=70.3259;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:32:13,0,19:13:519:0,19:0,750:-58.1902,-62.1036,-104.851,0,-43.1444,-37.4248 0|1:25:13,2,10:13:508:2,10:76,380:-27.2361,-24.9177,-66.0818,0,-35.539,-38.7591 0|1:16:5,0,11:5:196:0,11:0,435:-34.6857,-36.1909,-52.3081,0,-16.5099,-13.1986 dDocent_Contig_2468 94 . T C 17836.5 . AB=0.817276;ABP=529.372;AC=4;AF=0.666667;AN=6;AO=690;CIGAR=1X2M1X;DP=818;DPB=818;DPRA=0;EPP=1501.33;EPPR=144.156;GTI=0;LEN=1;MEANALT=4.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.984615;PAO=0;PQA=0;PQR=0;PRO=0;QA=21784;QR=2044;RO=65;RPL=690;RPP=1501.33;RPPR=144.156;RPR=0;RUN=1;SAF=690;SAP=1501.33;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:318:34,266,13:34:1078:266,13:8333,430:-659.5,0,-6.70015,-634.959,-51.9925,-717.809 1|1:216:2,198,10:2:65:198,10:6211,317:-553.016,-54.3555,0,-528.106,-34.0818,-530.342 0|1:284:29,226,21:29:901:226,21:7240,680:-574.66,0,-4.29973,-528.528,-17.4683,-594.547 dDocent_Contig_2470 27 . T C 2686.59 . AB=0.783784;ABP=80.6551;AC=3;AF=0.5;AN=6;AO=87;CIGAR=1X;DP=111;DPB=111;DPRA=0;EPP=191.928;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3408;QR=958;RO=24;RPL=0;RPP=191.928;RPPR=55.1256;RPR=87;RUN=1;SAF=87;SAP=191.928;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:4,36:4:162:36:1418:-115.839,0,-2.92576 0/1:38:14,24:14:556:24:927:-72.2936,0,-38.9444 0/1:33:6,27:6:240:27:1063:-86.0327,0,-12.0399 dDocent_Contig_2473 198 . G T 290.508 . AB=0.428571;ABP=4.25114;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=105;DPB=105;DPRA=0.918919;EPP=31.2394;EPPR=202.786;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=472;QR=3432;RO=92;RPL=13;RPP=31.2394;RPPR=202.786;RPR=0;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=202.786;SRR=92;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:39,1:39:1478:1:39:0,-8.14463,-129.403 0/1:28:16,12:16:600:12:433:-30.8748,0,-45.9017 0/0:37:37,0:37:1354:0:0:0,-11.1381,-122.136 dDocent_Contig_2474 45 . C A 155.353 . AB=0.222222;ABP=27.1378;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=81;DPB=81;DPRA=1.6;EPP=20.3821;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=306;QR=2891;RO=73;RPL=0;RPP=20.3821;RPPR=161.528;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:28,8:28:1097:8:306:-17.0581,0,-88.1845 0/0:20:20,0:20:793:0:0:0,-6.0206,-71.6908 0/0:25:25,0:25:1001:0:0:0,-7.52575,-90.3895 dDocent_Contig_2475 127 . C T 67.7916 . AB=0.189189;ABP=34.0565;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=58;DPB=58;DPRA=3.52381;EPP=18.2106;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=216;QR=1748;RO=51;RPL=0;RPP=18.2106;RPPR=113.755;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=113.755;SRR=51;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:426:0:0:0,-3.61236,-38.6779 0/1:37:30,7:30:1009:7:216:-8.60307,0,-79.972 0/0:9:9,0:9:313:0:0:0,-2.70927,-28.5061 dDocent_Contig_2476 7 . C A 858.99 . AB=0.195946;ABP=121.854;AC=2;AF=0.333333;AN=6;AO=29;CIGAR=1X3M;DP=148;DPB=148;DPRA=0;EPP=65.983;EPPR=204.957;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1099;QR=3528;RO=93;RPL=0;RPP=65.983;RPPR=204.957;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:36:23,0,11,2:23:873:0,11,2:0,410,75:-26.6371,-33.5608,-105.151,0,-71.5907,-68.2793,-27.4169,-99.0081,-65.4475,-98.406 0|1:52:31,4,12,5:31:1163:4,12,5:154,462,182:-28.6083,-25.2944,-119.348,0,-82.6159,-91.6494,-23.0822,-105.691,-80.4003,-116.831 0|0:60:39,0,6,15:39:1492:0,6,15:0,227,583:-36.1765,-47.9167,-170.348,-29.3119,-151.741,-149.935,0,-122.437,-103.83,-117.922 dDocent_Contig_2477 26 . T G 137.417 . AB=0.186047;ABP=39.8243;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=58;DPB=58;DPRA=1.43333;EPP=20.3821;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=327;QR=1983;RO=50;RPL=0;RPP=20.3821;RPPR=111.584;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:10,3:10:402:3:123:-7.5514,0,-32.6256 0/0:15:15,0:15:586:0:0:0,-4.51545,-53.0755 0/1:30:25,5:25:995:5:204:-9.71313,0,-80.8173 dDocent_Contig_2478 23 . T G 76.8812 . AB=0.176471;ABP=33.9218;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=51;DPB=51;DPRA=1;EPP=16.0391;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=230;QR=1654;RO=45;RPL=0;RPP=16.0391;RPPR=100.727;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:17,3:17:639:3:121:-5.2596,0,-51.8201 0/1:14:11,3:11:366:3:109:-5.95131,0,-29.038 0/0:17:17,0:17:649:0:0:0,-5.11751,-58.7424 dDocent_Contig_2480 13 . A G 33.5847 . AB=0.138889;ABP=43.7857;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=102;DPB=102;DPRA=1.09091;EPP=13.8677;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=171;QR=3831;RO=97;RPL=0;RPP=13.8677;RPPR=213.643;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:31,5:31:1214:5:171:-4.88116,0,-98.7012 0/0:36:36,0:36:1415:0:0:0,-10.8371,-127.614 0/0:30:30,0:30:1202:0:0:0,-9.0309,-108.453 dDocent_Contig_2482 50 . C A 322.825 . AB=0.206897;ABP=67.9298;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=126;DPB=126;DPRA=1.11538;EPP=42.0968;EPPR=237.529;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=681;QR=4158;RO=108;RPL=18;RPP=42.0968;RPPR=237.529;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:45,8:45:1745:8:313:-12.5788,0,-141.336 0/1:34:24,10:24:934:10:368:-23.2265,0,-74.127 0/0:39:39,0:39:1479:0:0:0,-11.7402,-133.381 dDocent_Contig_2484 56 . G T 60.194 . AB=0.139535;ABP=51.5402;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=138;DPB=138;DPRA=1.47143;EPP=18.2106;EPPR=287.473;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=267;QR=5192;RO=131;RPL=7;RPP=18.2106;RPPR=287.473;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=131;SRP=287.473;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:60:59,1:59:2332:1:40:0,-14.0661,-206.047 0/0:35:35,0:35:1396:0:0:0,-10.536,-125.898 0/1:43:37,6:37:1464:6:227:-7.84331,0,-119.064 dDocent_Contig_2485 15 . C T 761.331 . AB=0.21;ABP=149.107;AC=3;AF=0.5;AN=6;AO=42;CIGAR=1X;DP=200;DPB=200;DPRA=0;EPP=94.2121;EPPR=346.103;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.987342;PAO=0;PQA=0;PQR=0;PRO=0;QA=1565;QR=6271;RO=158;RPL=0;RPP=94.2121;RPPR=346.103;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=158;SRP=346.103;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:35,13:35:1403:13:489:-29.9036,0,-112.076 0/1:71:58,13:58:2282:13:462:-20.5398,0,-184.178 0/1:81:65,16:65:2586:16:614:-31.2126,0,-208.479 dDocent_Contig_2486 98 . N A 64.5902 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:68:-6.45793,-0.60206,0 dDocent_Contig_2487 42 . G A 284.688 . AB=0.354839;ABP=8.68415;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=69;DPB=69;DPRA=1.225;EPP=29.068;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=474;QR=2236;RO=57;RPL=0;RPP=29.068;RPPR=126.784;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:20,11:20:790:11:433:-29.9916,0,-62.0875 0/0:20:20,0:20:788:0:0:0,-6.0206,-71.2394 0/0:18:17,1:17:658:1:41:0,-1.32397,-55.4513 dDocent_Contig_2488 15 . C A 35.8394 . AB=0.113636;ABP=60.0608;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=166;DPB=166;DPRA=0.738806;EPP=16.0391;EPPR=350.446;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8312;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=6406;RO=160;RPL=0;RPP=16.0391;RPPR=350.446;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=160;SRP=350.446;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:67:67,0:67:2670:0:0:0,-20.169,-240.423 0/1:44:39,5:39:1558:5:203:-5.40774,0,-127.217 0/0:55:54,1:54:2178:1:41:0,-12.4621,-192 dDocent_Contig_2489 9 . G T 87.0843 . AB=0.121951;ABP=104.805;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=238;DPB=238;DPRA=0.765957;EPP=33.4109;EPPR=489.42;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.928571;PAIREDR=0.982143;PAO=0;PQA=0;PQR=0;PRO=0;QA=539;QR=8561;RO=224;RPL=0;RPP=33.4109;RPPR=489.42;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=224;SRP=489.42;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:82:72,10:72:2730:10:384:-10.2313,0,-221.209 0/0:62:58,4:58:2209:4:155:0,-4.33842,-184.71 0/0:94:94,0:94:3622:0:0:0,-28.2968,-326.097 dDocent_Contig_2490 42 . C T 157.374 . AB=0.124138;ABP=358.862;AC=2;AF=0.333333;AN=6;AO=45;CIGAR=1X;DP=446;DPB=446;DPRA=0;EPP=100.727;EPPR=871.599;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1457;QR=15758;RO=400;RPL=0;RPP=100.727;RPPR=871.599;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=400;SRP=871.599;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:135:117,17:117:4560:17:576:-11.4429,0,-369.626 0/0:156:147,9:147:5760:9:279:0,-21.5474,-492.823 0/1:155:136,19:136:5438:19:602:-7.81736,0,-442.593 dDocent_Contig_2491 110 . C A 1261.26 . AB=0.477876;ABP=3.49071;AC=3;AF=0.5;AN=6;AO=54;CIGAR=1X;DP=113;DPB=113;DPRA=0;EPP=120.27;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1830;QR=2002;RO=59;RPL=0;RPP=120.27;RPPR=131.127;RPR=54;RUN=1;SAF=0;SAP=120.27;SAR=54;SRF=0;SRP=131.127;SRR=59;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:15,19:15:509:19:646:-48.2248,0,-35.8983 0/1:51:24,27:24:812:27:907:-66.5857,0,-58.0417 0/1:28:20,8:20:681:8:277:-16.8382,0,-53.1794 dDocent_Contig_2492 9 . G A 291.245 . AB=0.0677966;ABP=194.468;AC=0;AF=0;AN=6;AO=10;CIGAR=1X1M1X;DP=350;DPB=350;DPRA=0;EPP=24.725;EPPR=663.138;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.802632;PAO=0;PQA=0;PQR=0;PRO=0;QA=395;QR=11803;RO=304;RPL=0;RPP=24.725;RPPR=663.138;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=304;SRP=663.138;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:165:152,2,9:152:5833:2,9:76,350:0,-39.5252,-517.683,-16.9888,-489.523,-493.046 0|0:67:59,0,8:59:2299:0,8:0,304:-7.54487,-25.3056,-214.274,0,-189.349,-186.941 0|0:118:93,8,16:93:3671:8,16:319,644:-25.1025,-26.8225,-326.485,0,-275.816,-297.272 dDocent_Contig_2493 13 . A G 4920.11 . AB=0.112614;ABP=3278.63;AC=3;AF=0.5;AN=6;AO=283;CIGAR=1X1M;DP=2513;DPB=2513;DPRA=0;EPP=617.537;EPPR=4009.45;GTI=0;LEN=1;MEANALT=6.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.809187;PAIREDR=0.810317;PAO=0;PQA=0;PQR=0;PRO=0;QA=11269;QR=73796;RO=1861;RPL=0;RPP=617.537;RPPR=4044.12;RPR=283;RUN=1;SAF=283;SAP=617.537;SAR=0;SRF=1857;SRP=4009.45;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:1064:805,127,109:805:31887:127,109:4992,4338:-168.235,0,-2586.17,-53.3982,-2267.24,-2644.99 0|1:900:624,120,135:624:24687:120,135:4767,5380:-255.176,-50.568,-2046.07,0,-1639.17,-1990.99 0|1:549:432,63,39:432:17222:63,39:2482,1551:-74.1233,0,-1399.22,-76.469,-1290.49,-1482.91 dDocent_Contig_2494 98 . N C 15179.3 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=521;CIGAR=2X;DP=521;DPB=521;DPRA=0;EPP=1134.35;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=16854;QR=0;RO=0;RPL=521;RPP=1134.35;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=1134.35;SAR=521;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:217:0,217:0:0:217:6976:-628.009,-65.3235,0 1|1:231:0,231:0:0:231:7485:-673.805,-69.5379,0 1|1:73:0,73:0:0:73:2393:-215.639,-21.9752,0 dDocent_Contig_2495 13 . G A 1186.69 . AB=0.0683761;ABP=570.99;AC=1;AF=0.166667;AN=6;AO=24;CIGAR=1X6M3X1M1X4M1X;DP=351;DPB=350.529;DPRA=0;EPP=55.1256;EPPR=39.9253;GTI=0;LEN=1;MEANALT=36;MQM=43.0833;MQMR=60;NS=3;NUMALT=9;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=883;QR=669;RO=17;RPL=0;RPP=55.1256;RPPR=39.9253;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:152:6,0,7,18,12,3,4,3,3,12:6:238:0,7,18,12,3,4,3,3,12:0,105,652,449,115,140,120,91,471:-68.1066,-69.9127,-89.5085,-64.432,-84.0276,-81.9204,-18.6321,-38.2286,-32.7486,-32.8101,-35.7217,-55.318,-49.8376,-4.03696,-51.7056,-60.7469,-80.3428,-74.862,-29.0626,-46.1521,-79.4397,-59.5998,-79.1957,-73.715,-27.9156,-45.005,-70.03,-77.9916,-60.0255,-79.6214,-74.1406,-28.3411,-45.4306,-70.4556,-69.3086,-78.7183,-63.4329,-83.0288,-77.548,-31.7488,-48.8382,-73.863,-72.716,-73.1416,-82.1257,-31.6851,-51.2815,-45.801,0,-17.0899,-42.1155,-40.9685,-41.394,-44.8016,-47.6691 0|0:110:5,6,6,3,8,7,5,0,9,2:5:193:6,6,3,8,7,5,0,9,2:229,126,112,301,259,175,0,169,73:-26.3028,-13.405,-27.4521,-19.8975,-21.3482,-33.9443,-18.8962,-20.3467,-26.8391,-33.8464,-4.80143,-6.2521,-12.7448,-11.7433,-18.2468,-7.153,-8.60362,-15.0963,-14.0948,0,-20.8994,-14.9163,-16.3669,-22.8594,-21.858,-7.76341,-10.1149,-29.2645,-27.8079,-29.2583,-35.7505,-34.7495,-20.6551,-23.0066,-30.7697,-43.6611,-17.4459,-18.8968,-25.3896,-24.3874,-10.2935,-12.6448,-20.4079,-33.2987,-30.5895,-21.8766,-23.327,-29.8193,-28.8183,-14.7237,-17.0752,-24.8384,-37.7299,-27.3677,-37.1278 0|0:89:6,0,0,3,9,1,5,7,3,7:6:238:0,0,3,9,1,5,7,3,7:0,0,119,360,40,175,278,51,274:-29.74,-31.5461,-51.143,-31.5461,-51.143,-51.143,-22.1105,-41.7077,-41.7077,-40.8046,-3.29517,-22.8932,-22.8932,-13.4574,-20.1839,-28.3774,-47.9744,-47.9744,-38.539,-19.7244,-47.6733,-18.6558,-38.253,-38.253,-28.8176,-10.0027,-35.0843,-36.7478,-8.65336,-28.2512,-28.2512,-18.8155,0,-25.0824,-15.3608,-26.144,-28.6503,-48.2469,-48.2469,-38.8118,-19.9975,-45.0783,-35.3572,-25.3554,-47.3438,-9.16744,-28.7652,-28.7652,-19.3295,-0.514114,-25.5964,-15.8748,-5.87232,-25.8694,-26.658 dDocent_Contig_2496 26 . C T 229.846 . AB=0.175676;ABP=70.6194;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X;DP=185;DPB=185;DPRA=1.24528;EPP=37.7539;EPPR=369.989;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9172;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.0177515;PAO=0;PQA=0;PQR=0;PRO=0;QA=638;QR=6694;RO=169;RPL=0;RPP=37.7539;RPPR=369.989;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=169;SRP=369.989;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:74:61,13:61:2364:13:516:-24.5075,0,-190.636 0/0:53:53,0:53:2127:0:0:0,-15.9546,-191.545 0/0:58:55,3:55:2203:3:122:0,-6.08725,-187.066 dDocent_Contig_2497 1 . N G 162.588 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=6.91895;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=57.6;MQMR=0;NS=1;NUMALT=1;ODDS=8.07091;PAIRED=0.2;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=177;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=1;SAP=6.91895;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:177:-16.2587,-1.50515,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_2498 86 . A G 3677.49 . AB=0.82;ABP=91.9538;AC=4;AF=0.666667;AN=6;AO=135;CIGAR=1X;DP=153;DPB=153;DPRA=0;EPP=296.159;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4444;QR=615;RO=18;RPL=135;RPP=296.159;RPPR=42.0968;RPR=0;RUN=1;SAF=135;SAP=296.159;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:7,60:7:237:60:1964:-156.864,0,-1.49255 1/1:53:0,53:0:0:53:1739:-156.787,-15.9546,0 0/1:33:11,22:11:378:22:741:-57.0708,0,-24.4175 dDocent_Contig_2500 66 . G A 374.312 . AB=0.347826;ABP=12.2627;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X;DP=94;DPB=94;DPRA=1.91667;EPP=37.7539;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=583;QR=2812;RO=78;RPL=16;RPP=37.7539;RPPR=172.385;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:30,16:30:1080:16:583:-38.954,0,-83.646 0/0:23:23,0:23:813:0:0:0,-6.92369,-73.4786 0/0:25:25,0:25:919:0:0:0,-7.52575,-83.0225 dDocent_Contig_2501 79 . G A 615.98 . AB=0.3;ABP=34.2795;AC=2;AF=0.333333;AN=6;AO=29;CIGAR=1X;DP=134;DPB=134;DPRA=0;EPP=65.983;EPPR=231.015;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1088;QR=3879;RO=105;RPL=29;RPP=65.983;RPPR=231.015;RPR=0;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:44:42,2:42:1565:2:71:0,-6.50342,-134.382 0/1:62:42,20:42:1573:20:758:-49.8837,0,-123.173 0/1:28:21,7:21:741:7:259:-15.2373,0,-58.579 dDocent_Contig_2502 70 . G A 77.769 . AB=0.25;ABP=11.6962;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=65;DPB=65;DPRA=0.653061;EPP=11.6962;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=2355;RO=61;RPL=4;RPP=11.6962;RPPR=135.47;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:964:0:0:0,-7.52575,-87.0639 0/0:24:24,0:24:927:0:0:0,-7.22472,-83.7341 0/1:16:12,4:12:464:4:156:-9.60081,0,-37.2949 dDocent_Contig_2503 10 . A G 213.665 . AB=0.264706;ABP=19.3602;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=103;DPB=103;DPRA=0.985507;EPP=22.5536;EPPR=207.129;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=364;QR=3696;RO=94;RPL=0;RPP=22.5536;RPPR=207.129;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:25,9:25:980:9:364:-22.8894,0,-78.2673 0/0:29:29,0:29:1123:0:0:0,-8.72987,-101.36 0/0:40:40,0:40:1593:0:0:0,-12.0412,-143.601 dDocent_Contig_2504 24 . C T 155.827 . AB=0.141026;ABP=90.3146;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=171;DPB=171;DPRA=1.67742;EPP=26.8965;EPPR=350.446;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=447;QR=6396;RO=160;RPL=0;RPP=26.8965;RPPR=350.446;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=160;SRP=350.446;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:78:67,11:67:2676:11:447:-17.1055,0,-217.486 0/0:46:46,0:46:1848:0:0:0,-13.8474,-166.525 0/0:47:47,0:47:1872:0:0:0,-14.1484,-168.684 dDocent_Contig_2505 4 . T A 101.686 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=9I1X2M1X;DP=3;DPB=9.75;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=109;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:3:0,3:0:0:3:109:-10.1681,-0.90309,0 dDocent_Contig_2507 69 . C T 46.6389 . AB=0.12766;ABP=59.6072;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=97;DPB=97;DPRA=1.88;EPP=16.0391;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=222;QR=3442;RO=91;RPL=6;RPP=16.0391;RPPR=200.614;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:41,6:41:1566:6:222:-6.18676,0,-127.041 0/0:13:13,0:13:498:0:0:0,-3.91339,-45.1607 0/0:37:37,0:37:1378:0:0:0,-11.1381,-124.304 dDocent_Contig_2508 33 . T A 50.3316 . AB=0.1875;ABP=16.582;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=35;DPB=35;DPRA=1.68421;EPP=9.52472;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1268;RO=32;RPL=0;RPP=9.52472;RPPR=72.4974;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:13,3:13:523:3:122:-6.55601,0,-42.5999 0/0:6:6,0:6:245:0:0:0,-1.80618,-22.4295 0/0:13:13,0:13:500:0:0:0,-3.91339,-45.3352 dDocent_Contig_2509 151 . N G 505.99 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=14;CIGAR=1X;DP=14;DPB=14;DPRA=0;EPP=33.4109;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=0.857143;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=543;QR=0;RO=0;RPL=14;RPP=33.4109;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:237:-21.7011,-1.80618,0 1/1:1:0,1:0:0:1:40:-3.99568,-0.30103,0 1/1:7:0,7:0:0:7:266:-24.2996,-2.10721,0 dDocent_Contig_2511 100 . N A 738.375 . AB=0.261905;ABP=23.691;AC=6;AF=1;AN=6;AO=18;CIGAR=8X2I2X2M1X8M;DP=52;DPB=82.7619;DPRA=0;EPP=42.0968;EPPR=0;GTI=0;LEN=1;MEANALT=4.66667;MQM=19.9444;MQMR=0;NS=3;NUMALT=5;ODDS=5.55112e-17;PAIRED=0;PAIREDR=0;PAO=20.5;PQA=685.25;PQR=685.25;PRO=20.5;QA=359;QR=0;RO=0;RPL=0;RPP=42.0968;RPPR=0;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:10:0,0,0,0,1,7:0:0:0,0,0,1,7:0,0,0,37,124:-7.35138,-7.35138,-7.35138,-7.35138,-7.35138,-7.35138,-7.35138,-7.35138,-7.35138,-7.35138,-4.39201,-4.39201,-4.39201,-4.39201,-4.09098,-2.10721,-2.10721,-2.10721,-2.10721,-0.35425,0 1|1:11:0,0,4,0,1,4:0:0:0,4,0,1,4:0,144,0,36,86:-15.4723,-15.4723,-15.4723,-4.18375,-4.18375,-2.97963,-15.4723,-15.4723,-4.18375,-15.4723,-12.5844,-12.5844,-1.37647,-12.5844,-12.2833,-10.3972,-10.3972,0,-10.3972,-7.60612,-9.1931 1|1:31:0,13,5,3,3,7:0:0:13,5,3,3,7:491,184,112,106,149:-54.5152,-14.7307,-10.8173,-39.7139,0,-38.2087,-45.3604,-5.6106,-30.5664,-44.4574,-46.3988,-6.65246,-31.6056,-37.2482,-45.4957,-45.1887,-5.58726,-30.4243,-36.0532,-37.0928,-43.0815 dDocent_Contig_2514 17 . G A 103.47 . AB=0.433333;ABP=4.16842;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X3M1X;DP=46;DPB=46;DPRA=0.9375;EPP=31.2394;EPPR=64.083;GTI=0;LEN=1;MEANALT=1.5;MQM=19;MQMR=59.4062;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.90625;PAO=0;PQA=0;PQR=0;PRO=0;QA=489;QR=1224;RO=32;RPL=0;RPP=31.2394;RPPR=72.4974;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=31;SRP=64.083;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:16:16,0:16:617:0:0:0,-4.81648,-55.8684 0|1:13:9,3:9:344:3:113:-1.58402,0,-27.5747 0|1:17:7,10:7:263:10:376:-12.1186,0,-18.9021 dDocent_Contig_2515 24 . G T 302.635 . AB=0.267606;ABP=36.3164;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=1X;DP=89;DPB=89;DPRA=0;EPP=46.4397;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=640;QR=2725;RO=69;RPL=0;RPP=46.4397;RPPR=152.842;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:41,10:41:1605:10:327:-14.3954,0,-129.341 0/0:18:17,1:17:679:1:34:0,-2.01963,-58.0425 0/1:20:11,9:11:441:9:279:-19.3909,0,-34.0244 dDocent_Contig_2516 22 . A G 599.827 . AB=0.214815;ABP=98.3782;AC=2;AF=0.333333;AN=6;AO=31;CIGAR=1X;DP=203;DPB=203;DPRA=0;EPP=70.3259;EPPR=376.504;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1220;QR=6804;RO=172;RPL=0;RPP=70.3259;RPPR=376.504;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=172;SRP=376.504;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:91:66,25:66:2636:25:984:-61.4669,0,-209.971 0/1:44:40,4:40:1552:4:159:-1.44613,0,-126.675 0/0:68:66,2:66:2616:2:77:0,-13.1612,-228.253 dDocent_Contig_2517 111 . A C 417.488 . 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AB=0.0343137;ABP=387.276;AC=0;AF=0;AN=6;AO=7;CIGAR=3X;DP=257;DPB=257;DPRA=0;EPP=18.2106;EPPR=85.5263;GTI=0;LEN=1;MEANALT=7;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=265;QR=1424;RO=38;RPL=0;RPP=18.2106;RPPR=85.5263;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:83:9,2,5,12,45,2:9:332:2,5,12,45,2:75,188,459,1711,75:-144.976,-141.542,-168.088,-132.283,-153.288,-157.926,-113.184,-134.188,-124.929,-136.719,-7.34999,-28.3557,-19.0955,0,-20.9533,-141.542,-162.547,-153.288,-134.188,-28.3559,-168.089 0|0:53:11,6,0,11,18,5:11:413:6,0,11,18,5:228,0,406,693,192:-53.5938,-38.2062,-70.2295,-56.9052,-72.0357,-90.7348,-23.7034,-38.8331,-57.5318,-54.2205,0,-15.1306,-33.8304,-0.627917,-28.4119,-41.1434,-56.2739,-74.9731,-41.7703,-18.0679,-73.468 0|0:121:18,14,2,8,64,15:18:679:14,2,8,64,15:522,77,313,2464,574:-196.896,-159.583,-211.013,-195.992,-208.905,-251.035,-176.582,-189.496,-225.905,-229.819,0,-12.914,-49.3225,-29.9117,-36.3791,-155.211,-168.124,-204.534,-185.124,-8.5404,-206.341 dDocent_Contig_2520 15 . C A 90.539 . AB=0.120879;ABP=116.619;AC=1;AF=0.166667;AN=6;AO=18;CIGAR=1X;DP=199;DPB=199;DPRA=0;EPP=42.0968;EPPR=396.047;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.928177;PAO=0;PQA=0;PQR=0;PRO=0;QA=690;QR=7101;RO=181;RPL=0;RPP=42.0968;RPPR=396.047;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=181;SRP=396.047;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:91:80,11:80:3153:11:418:-10.5763,0,-256.472 0/0:58:55,3:55:2137:3:114:0,-6.82864,-181.899 0/0:50:46,4:46:1811:4:158:0,-0.451526,-148.613 dDocent_Contig_2521 93 . C T 39.7163 . AB=0.222222;ABP=15.074;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=60;DPB=60;DPRA=1.16667;EPP=16.0391;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=167;QR=1763;RO=54;RPL=6;RPP=16.0391;RPPR=120.27;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:14,4:14:422:4:118:-5.49446,0,-32.8525 0/0:18:18,0:18:594:0:0:0,-5.41854,-53.7734 0/0:24:22,2:22:747:2:49:0,-2.56997,-62.892 dDocent_Contig_2522 14 . C T 3503.57 . 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A G 4664.62 . AB=0.256705;ABP=539.772;AC=3;AF=0.5;AN=6;AO=268;CIGAR=1X;DP=1044;DPB=1044;DPRA=0;EPP=576.311;EPPR=1651.2;GTI=0;LEN=1;MEANALT=2;MQM=52.2799;MQMR=59.9883;NS=3;NUMALT=1;ODDS=0;PAIRED=0.00373134;PAIREDR=0.988266;PAO=0;PQA=0;PQR=0;PRO=0;QA=9067;QR=30542;RO=767;RPL=0;RPP=584.965;RPPR=1668.53;RPR=268;RUN=1;SAF=1;SAP=576.311;SAR=267;SRF=765;SRP=1651.2;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:320:216,101:216:8541:101:3409:-192.181,0,-672.429 0/1:357:279,73:279:11119:73:2505:-115.204,0,-893.66 0/1:367:272,94:272:10882:94:3153:-164.601,0,-868.05 dDocent_Contig_2524 44 . C A 1424.9 . AB=0.515464;ABP=3.21178;AC=3;AF=0.5;AN=6;AO=50;CIGAR=1X;DP=97;DPB=97;DPRA=0;EPP=111.584;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1958;QR=1822;RO=47;RPL=0;RPP=111.584;RPPR=105.07;RPR=50;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:13,20:13:486:20:790:-61.4871,0,-34.1308 0/1:30:14,16:14:537:16:628:-47.8221,0,-39.6323 0/1:34:20,14:20:799:14:540:-38.7041,0,-61.9923 dDocent_Contig_2526 67 . A C 126.066 . AB=0.259259;ABP=16.6021;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=88;DPB=88;DPRA=0.885246;EPP=18.2106;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=247;QR=3214;RO=81;RPL=7;RPP=18.2106;RPPR=178.9;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:37,0:37:1468:0:0:0,-11.1381,-132.372 0/0:24:24,0:24:956:0:0:0,-7.22472,-86.3403 0/1:27:20,7:20:790:7:247:-14.4306,0,-63.291 dDocent_Contig_2527 107 . N A 168.305 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=176;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:142:-13.1293,-1.20412,0 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_2528 38 . T C 58.1881 . AB=0.114286;ABP=93.4676;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=136;DPB=136;DPRA=1.56061;EPP=24.725;EPPR=276.616;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=397;QR=4879;RO=126;RPL=0;RPP=24.725;RPPR=276.616;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=126;SRP=276.616;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1273:0:0:0,-9.93399,-114.843 0/1:70:62,8:62:2423:8:315:-7.64271,0,-197.173 0/0:33:31,2:31:1183:2:82:0,-2.15431,-98.9678 dDocent_Contig_2529 17 . T C 1510.05 . AB=0.0714286;ABP=114.686;AC=0;AF=0;AN=6;AO=5;CIGAR=1X3M1X5M1X;DP=201;DPB=201;DPRA=0;EPP=13.8677;EPPR=204.957;GTI=0;LEN=1;MEANALT=7;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=3663;RO=93;RPL=0;RPP=13.8677;RPPR=204.957;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:70:26,7,5,18,1,10:26:1026:7,5,18,1,10:280,193,697,41,395:-49.422,-34.1815,-116.498,-41.3994,-102.756,-124.317,0,-61.3557,-68.573,-79.0036,-53.8643,-115.221,-122.438,-81.0378,-137.986,-24.7485,-86.1055,-93.3227,-51.9228,-105.788,-106.162 0|0:65:36,1,0,18,5,0:36:1412:1,0,18,5,0:40,0,701,157,0:-46.7909,-54.3321,-170.152,-57.628,-170.453,-173.748,0,-112.842,-116.138,-110.719,-45.027,-157.845,-161.14,-103.532,-159.635,-57.628,-170.453,-173.748,-116.138,-161.14,-173.748 0|0:66:31,6,0,21,3,2:31:1225:6,0,21,3,2:236,0,845,123,73:-60.3149,-50.2351,-149.232,-69.6468,-151.038,-170.45,0,-81.3951,-100.808,-94.486,-59.4934,-140.885,-160.297,-90.6543,-159.394,-63.6863,-145.077,-164.489,-94.8466,-154.336,-163.887 dDocent_Contig_2530 63 . C T 916.336 . AB=0.300752;ABP=48.8725;AC=3;AF=0.5;AN=6;AO=40;CIGAR=3X;DP=133;DPB=133;DPRA=0;EPP=89.8692;EPPR=204.957;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1513;QR=3526;RO=93;RPL=40;RPP=89.8692;RPPR=204.957;RPR=0;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:53:35,18:35:1336:18:687:-46.2042,0,-104.557 0|1:38:28,10:28:1062:10:381:-23.206,0,-84.4479 0|1:42:30,12:30:1128:12:445:-27.7463,0,-89.1781 dDocent_Contig_2531 1 . N G 120.78 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:40:-3.99568,-0.30103,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 dDocent_Contig_2533 70 . G A 1220.98 . AB=0.577465;ABP=6.71098;AC=3;AF=0.5;AN=6;AO=41;CIGAR=1X;DP=71;DPB=71;DPRA=0;EPP=92.0407;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1644;QR=1180;RO=30;RPL=41;RPP=92.0407;RPPR=68.1545;RPR=0;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:6,20:6:244:20:800:-64.4913,0,-14.512 0/1:27:13,14:13:503:14:560:-42.6152,0,-37.4807 0/1:18:11,7:11:433:7:284:-20.5149,0,-33.9038 dDocent_Contig_2534 12 . T C 340.009 . AB=0.110831;ABP=525.263;AC=3;AF=0.5;AN=6;AO=44;CIGAR=1X;DP=397;DPB=397;DPRA=0;EPP=98.5551;EPPR=735.19;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.7337;NS=3;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=0.98017;PAO=0;PQA=0;PQR=0;PRO=0;QA=1755;QR=14128;RO=353;RPL=0;RPP=98.5551;RPPR=769.54;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=349;SRP=735.19;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:145:129,16:129:5124:16:639:-14.193,0,-417.293 0/1:113:97,16:97:3889:16:629:-22.9306,0,-315.257 0/1:139:127,12:127:5115:12:487:-2.33829,0,-418.313 dDocent_Contig_2535 28 . G T 115.863 . AB=0.170732;ABP=41.6201;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=105;DPB=105;DPRA=1.04412;EPP=22.5536;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=362;QR=3801;RO=96;RPL=0;RPP=22.5536;RPPR=211.472;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:28,2:28:1119:2:80:0,-1.43911,-93.4024 0/0:34:34,0:34:1322:0:0:0,-10.235,-119.244 0/1:41:34,7:34:1360:7:282:-13.4102,0,-110.319 dDocent_Contig_2536 12 . G A 448.99 . AB=0.0869565;ABP=37.093;AC=0;AF=0;AN=6;AO=2;CIGAR=1X1M1X;DP=66;DPB=66;DPRA=0;EPP=7.35324;EPPR=92.0407;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=1618;RO=41;RPL=0;RPP=7.35324;RPPR=92.0407;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:14:10,0,0,4:10:398:0,0,4:0,0,157:-10.2933,-13.3036,-46.0777,-13.3036,-46.0777,-46.0777,0,-33.1678,-33.1678,-31.9637 0|0:23:10,2,7,4:10:387:2,7,4:79,278,163:-19.8728,-16.3831,-47.5611,0,-25.2753,-29.6693,-9.4325,-34.7127,-18.3244,-40.01 0|0:29:21,0,8,0:21:833:0,8,0:0,318,0:-20.2558,-26.5775,-95.1428,0,-68.9621,-66.5539,-26.5775,-95.1428,-68.9621,-95.1428 dDocent_Contig_2537 10 . T C 1461.09 . AB=0.40625;ABP=12.7819;AC=3;AF=0.5;AN=6;AO=52;CIGAR=1X;DP=128;DPB=128;DPRA=0;EPP=115.927;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2102;QR=3020;RO=76;RPL=0;RPP=115.927;RPPR=168.042;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:17,10:17:657:10:403:-28.5011,0,-51.3265 0/1:55:30,25:30:1192:25:1007:-74.3701,0,-91.0026 0/1:46:29,17:29:1171:17:692:-48.761,0,-91.8202 dDocent_Contig_2538 27 . T G 651.192 . AB=0.178571;ABP=178.9;AC=2;AF=0.333333;AN=6;AO=42;CIGAR=1X;DP=284;DPB=284;DPRA=0;EPP=94.2121;EPPR=481.639;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.3333;MQMR=57.0583;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.2125;PAO=0;PQA=0;PQR=0;PRO=0;QA=1690;QR=9254;RO=240;RPL=0;RPP=94.2121;RPPR=524.164;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=235;SRP=481.639;SRR=5;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:88:79,7:79:3035:7:279:0,-0.786801,-244.089 0/1:106:88,18:88:3427:18:725:-33.6646,0,-274.517 0/1:90:73,17:73:2792:17:686:-34.9773,0,-223.479 dDocent_Contig_2539 10 . T C 2724.94 . AB=0.48;ABP=3.70517;AC=3;AF=0.5;AN=6;AO=96;CIGAR=1X;DP=200;DPB=200;DPRA=0;EPP=211.472;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3749;QR=4144;RO=104;RPL=0;RPP=211.472;RPPR=228.843;RPR=96;RUN=1;SAF=96;SAP=211.472;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:87:36,51:36:1439:51:2008:-154.728,0,-103.573 0/1:59:32,27:32:1250:27:1041:-76.2219,0,-95.0078 0/1:54:36,18:36:1455:18:700:-47.0668,0,-114.938 dDocent_Contig_2540 23 . G A 370.712 . AB=0.19802;ABP=83.0108;AC=2;AF=0.333333;AN=6;AO=24;CIGAR=1X;DP=153;DPB=153;DPRA=0;EPP=55.1256;EPPR=283.13;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=944;QR=5120;RO=129;RPL=0;RPP=55.1256;RPPR=283.13;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=129;SRP=283.13;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:44,11:44:1739:11:437:-23.1269,0,-140.18 0/1:46:37,9:37:1467:9:344:-17.4668,0,-118.436 0/0:52:48,4:48:1914:4:163:0,-0.595132,-157.403 dDocent_Contig_2541 30 . T C 340.277 . AB=0.197674;ABP=71.2854;AC=1;AF=0.166667;AN=6;AO=17;CIGAR=1X;DP=222;DPB=222;DPRA=1.26471;EPP=39.9253;EPPR=448.162;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=679;QR=8140;RO=205;RPL=0;RPP=39.9253;RPPR=448.162;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=205;SRP=448.162;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:86:69,17:69:2741:17:679:-35.5505,0,-220.922 0/0:68:68,0:68:2691:0:0:0,-20.47,-242.319 0/0:68:68,0:68:2708:0:0:0,-20.47,-243.83 dDocent_Contig_2542 98 . N A 96.1056 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=103;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:103:-9.61002,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_2543 34 . T G 13655.4 . AB=0.171388;ABP=665.205;AC=6;AF=1;AN=6;AO=121;CIGAR=1X5M;DP=706;DPB=706.333;DPRA=0;EPP=265.758;EPPR=81.1833;GTI=0;LEN=1;MEANALT=10.3333;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0.5;PQA=18.75;PQR=0;PRO=0;QA=4709;QR=1435;RO=36;RPL=0;RPP=265.758;RPPR=81.1833;RPR=121;RUN=1;SAF=121;SAP=265.758;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:300:17,17,153,42,59:17:679:17,153,42,59:664,5941,1578,2261:-612.64,-563.17,-613.979,-129.618,-130.958,-139.488,-488.506,-489.846,-56.2964,-531.79,-432.212,-433.551,0,-358.889,-470.378 1|1:180:5,14,90,28,28:5:198:14,90,28,28:545,3460,1065,1109:-357.503,-314.217,-326.3,-74.9817,-46.489,-64.1863,-271.674,-243.181,-3.9488,-279.543,-267.73,-239.236,0,-196.693,-275.598 1|1:226:14,11,107,33,34:14:558:11,107,33,34:422,4150,1274,1339:-400.923,-370.502,-413.144,-64.2013,-75.5204,-77.9448,-300.523,-311.841,-5.54206,-336.542,-294.983,-306.301,0,-236.322,-330.701 dDocent_Contig_2544 47 . A T 311.75 . AB=0.276596;ABP=23.3852;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=91;DPB=91;DPRA=2.13636;EPP=31.2394;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=520;QR=2941;RO=78;RPL=0;RPP=31.2394;RPPR=172.385;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:494:0:0:0,-3.91339,-44.7949 0/0:31:31,0:31:1151:0:0:0,-9.33193,-103.873 0/1:47:34,13:34:1296:13:520:-32.9989,0,-102.761 dDocent_Contig_2546 9 . C T 244.069 . AB=0.168421;ABP=93.7321;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=162;DPB=162;DPRA=0.708955;EPP=37.7539;EPPR=320.045;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=620;QR=5553;RO=146;RPL=0;RPP=37.7539;RPPR=320.045;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=146;SRP=320.045;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:67:67,0:67:2552:0:0:0,-20.169,-229.882 0/1:55:45,10:45:1700:10:387:-18.6309,0,-136.706 0/1:40:34,6:34:1301:6:233:-9.29888,0,-105.338 dDocent_Contig_2547 53 . T C 439.536 . AB=0.298507;ABP=26.6372;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X;DP=67;DPB=67;DPRA=0;EPP=46.4397;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=762;QR=1795;RO=47;RPL=20;RPP=46.4397;RPPR=105.07;RPR=0;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:9,10:9:344:10:379:-28.7358,0,-25.5963 0/1:26:19,7:19:719:7:279:-17.6538,0,-57.2051 0/1:22:19,3:19:732:3:104:-3.07482,0,-59.5756 dDocent_Contig_2548 121 . T G 108.871 . AB=0.272727;ABP=12.8806;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=52;DPB=52;DPRA=1.46667;EPP=16.0391;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=211;QR=1554;RO=46;RPL=0;RPP=16.0391;RPPR=102.898;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=102.898;SRR=46;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:368:0:0:0,-3.31133,-33.444 0/1:22:16,6:16:531:6:211:-12.711,0,-41.4828 0/0:19:19,0:19:655:0:0:0,-5.71957,-59.2733 dDocent_Contig_2549 14 . C A 97.1363 . AB=0.333333;ABP=5.9056;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=327;DPB=327;DPRA=0;EPP=26.8965;EPPR=23.0483;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9209;NS=3;NUMALT=1;ODDS=0;PAIRED=0.636364;PAIREDR=0.174051;PAO=0;PQA=0;PQR=0;PRO=0;QA=444;QR=12347;RO=316;RPL=0;RPP=26.8965;RPPR=689.196;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=185;SRP=23.0483;SRR=131;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:182:179,3:179:6937:3:122:0,-43.415,-612.632 0/0:133:129,4:129:5085:4:158:0,-25.4376,-442.911 0/1:12:8,4:8:325:4:164:-11.5375,0,-26.0071 dDocent_Contig_2550 10 . G A 1974.13 . AB=0.299242;ABP=95.4295;AC=3;AF=0.5;AN=6;AO=79;CIGAR=1X;DP=264;DPB=264;DPRA=0;EPP=174.557;EPPR=402.561;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.7215;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.987342;PAIREDR=0.961957;PAO=0;PQA=0;PQR=0;PRO=0;QA=3133;QR=7199;RO=184;RPL=0;RPP=174.557;RPPR=402.561;RPR=79;RUN=1;SAF=79;SAP=174.557;SAR=0;SRF=184;SRP=402.561;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:124:82,42:82:3233:42:1656:-111.938,0,-253.722 0/1:54:32,21:32:1235:21:839:-59.5036,0,-95.1068 0/1:86:70,16:70:2731:16:638:-31.4946,0,-220.014 dDocent_Contig_2551 23 . T C 1152.42 . AB=0.0681818;ABP=74.2741;AC=5;AF=0.833334;AN=6;AO=3;CIGAR=1X7M;DP=82;DPB=82;DPRA=0;EPP=9.52472;EPPR=42.0968;GTI=0;LEN=1;MEANALT=4;MQM=58;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=673;RO=18;RPL=0;RPP=9.52472;RPPR=42.0968;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:20:4,8,1,4,2:4:151:8,1,4,2:304,38,159,80:-24.4467,-0.725263,-10.69,-22.5345,-9.98198,-34.6081,-12.5549,0,-21.8139,-23.7264,-19.0664,-6.51287,-28.3249,-18.3454,-30.8394 0|1:24:8,12,3,0,1:8:305:12,3,0,1:462,120,0,40:-35.5127,0,-21.394,-28.0333,-15.1172,-52.1472,-37.921,-25.0064,-53.0503,-62.9373,-34.6251,-21.7102,-49.7544,-59.6416,-59.3406 1|1:38:6,18,8,6,0:6:217:18,8,6,0:684,296,240,0:-60.7791,-6.49808,-18.7812,-38.3851,0,-53.6801,-42.851,-4.45975,-36.3535,-58.7498,-62.5853,-24.1997,-56.0883,-60.556,-80.2901 dDocent_Contig_2554 98 . N G 1115.11 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=39;CIGAR=2X;DP=39;DPB=220.5;DPRA=0;EPP=87.6977;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=363;PQA=11073;PQR=0;PRO=0;QA=1234;QR=0;RO=0;RPL=39;RPP=87.6977;RPPR=0;RPR=0;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:13:0,13:0:0:13:409:-36.8005,-3.91339,0 1|1:9:0,9:0:0:9:274:-24.6552,-2.70927,0 1|1:17:0,17:0:0:17:551:-49.578,-5.11751,0 dDocent_Contig_2555 9 . C T 471.079 . AB=0.345455;ABP=14.4204;AC=1;AF=0.166667;AN=6;AO=22;CIGAR=1X;DP=130;DPB=130;DPRA=0;EPP=50.7827;EPPR=237.529;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=841;QR=4172;RO=108;RPL=0;RPP=50.7827;RPPR=237.529;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:26,2:26:999:2:78:0,-1.02537,-82.8184 0/1:55:36,19:36:1388:19:724:-48.9316,0,-108.646 0/0:47:46,1:46:1785:1:39:0,-10.2518,-157.004 dDocent_Contig_2556 38 . A G 45.8198 . AB=0.12;ABP=65.7224;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=85;DPB=85;DPRA=2.85714;EPP=16.0391;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=3147;RO=79;RPL=0;RPP=16.0391;RPPR=174.557;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:44,6:44:1727:6:231:-6.10485,0,-140.604 0/0:21:21,0:21:850:0:0:0,-6.32163,-76.8126 0/0:14:14,0:14:570:0:0:0,-4.21442,-51.6422 dDocent_Contig_2558 158 . T C 39.3023 . AB=0.181818;ABP=22.3561;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=3X;DP=82;DPB=82;DPRA=0.733333;EPP=11.6962;EPPR=147.33;GTI=0;LEN=1;MEANALT=1;MQM=53;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=134;QR=2930;RO=78;RPL=0;RPP=11.6962;RPPR=147.33;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=172.385;SRR=78;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:29:29,0:29:1084:0:0:0,-8.72987,-97.8606 0|1:22:18,4:18:695:4:134:-5.75409,0,-56.2586 0|0:31:31,0:31:1151:0:0:0,-9.33193,-103.882 dDocent_Contig_2559 12 . C G 67.5165 . AB=0.139535;ABP=51.5402;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=2X;DP=97;DPB=97;DPRA=1.59259;EPP=16.0391;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=235;QR=3597;RO=91;RPL=0;RPP=16.0391;RPPR=200.614;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:29:29,0:29:1145:0:0:0,-8.72987,-103.336 0|0:25:25,0:25:997:0:0:0,-7.52575,-90.03 0|1:43:37,6:37:1455:6:235:-8.57556,0,-118.25 dDocent_Contig_2560 77 . G T 82.0287 . AB=0.363636;ABP=4.78696;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=26;DPB=26;DPRA=1.46667;EPP=11.6962;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=141;QR=779;RO=22;RPL=4;RPP=11.6962;RPPR=50.7827;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:7,4:7:248:4:141:-9.7257,0,-19.3531 0/0:10:10,0:10:357:0:0:0,-3.0103,-32.4722 0/0:5:5,0:5:174:0:0:0,-1.50515,-16.002 dDocent_Contig_2561 139 . G A 259.467 . AB=0.195122;ABP=69.2137;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=111;DPB=111;DPRA=0;EPP=42.0968;EPPR=204.957;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=676;QR=3628;RO=93;RPL=0;RPP=42.0968;RPPR=204.957;RPR=18;RUN=1;SAF=0;SAP=42.0968;SAR=18;SRF=0;SRP=204.957;SRR=93;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:28,8:28:1099:8:320:-18.3302,0,-88.3579 0/0:29:27,2:27:1029:2:82:0,-0.950192,-85.1176 0/1:46:38,8:38:1500:8:274:-11.1392,0,-121.398 dDocent_Contig_2562 13 . G A 1106.04 . AB=0.182353;ABP=300.987;AC=3;AF=0.5;AN=6;AO=62;CIGAR=1X;DP=340;DPB=340;DPRA=0;EPP=137.642;EPPR=563.381;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.870968;PAIREDR=0.973684;PAO=0;PQA=0;PQR=0;PRO=0;QA=2389;QR=10350;RO=266;RPL=0;RPP=137.642;RPPR=580.622;RPR=62;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=264;SRP=563.381;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:138:109,23:109:4196:23:910:-42.1428,0,-337.603 0/1:122:97,21:97:3799:21:786:-35.1626,0,-306.052 0/1:80:60,18:60:2355:18:693:-38.8212,0,-188.242 dDocent_Contig_2563 209 . N G 112.807 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:121:-11.2802,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_2564 27 . T C 1373.42 . AB=0.361702;ABP=26.4345;AC=3;AF=0.5;AN=6;AO=51;CIGAR=1X;DP=141;DPB=141;DPRA=0;EPP=113.755;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.988889;PAO=0;PQA=0;PQR=0;PRO=0;QA=2048;QR=3637;RO=90;RPL=0;RPP=113.755;RPPR=198.443;RPR=51;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:28,13:28:1126:13:523:-35.0743,0,-89.279 0/1:64:39,25:39:1583:25:1002:-71.2121,0,-123.434 0/1:36:23,13:23:928:13:523:-36.5783,0,-72.9844 dDocent_Contig_2565 40 . A G 44.3575 . AB=0.103896;ABP=107.946;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=269;DPB=269;DPRA=0.602459;EPP=22.5536;EPPR=567.593;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=364;QR=10149;RO=260;RPL=0;RPP=22.5536;RPPR=567.593;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=260;SRP=567.593;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:122:122,0:122:4774:0:0:0,-36.7257,-429.603 0/1:77:69,8:69:2659:8:323:-6.25965,0,-216.271 0/0:70:69,1:69:2716:1:41:0,-16.9775,-240.465 dDocent_Contig_2566 40 . A G 610.303 . AB=0.353846;ABP=15.0703;AC=1;AF=0.166667;AN=6;AO=29;CIGAR=1X;DP=163;DPB=163;DPRA=0;EPP=65.983;EPPR=293.988;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1152;QR=5273;RO=134;RPL=0;RPP=65.983;RPPR=293.988;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=134;SRP=293.988;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:42,23:42:1664:23:909:-62.5531,0,-130.431 0/0:42:39,3:39:1526:3:122:0,-1.27077,-126.224 0/0:56:53,3:53:2083:3:121:0,-5.57748,-176.389 dDocent_Contig_2567 9 . C A 2110.11 . AB=0.0373563;ABP=649.984;AC=0;AF=0;AN=6;AO=13;CIGAR=1X3M1X;DP=348;DPB=348;DPRA=0;EPP=31.2394;EPPR=428.619;GTI=0;LEN=1;MEANALT=5.66667;MQM=23.0769;MQMR=53.7347;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.933673;PAO=0;PQA=0;PQR=0;PRO=0;QA=497;QR=7656;RO=196;RPL=0;RPP=31.2394;RPPR=428.619;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=196;SRP=428.619;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:112:67,1,12,22:67:2611:1,12,22:40,468,867:-44.2953,-62.6175,-265.181,-26.0011,-227.029,-225.265,0,-201.026,-164.42,-196.251 0|0:121:64,8,8,37:64:2492:8,8,37:300,304,1461:-86.5636,-92.1618,-289.587,-80.8932,-267.067,-278.333,0,-186.221,-174.961,-188.753 0|0:115:65,4,1,44:65:2553:4,1,44:157,35,1782:-85.6749,-97.8591,-299.382,-102.393,-297.738,-304.821,0,-195.389,-199.921,-189.523 dDocent_Contig_2568 98 . N A 100.757 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=108;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0 dDocent_Contig_2569 43 . A T 1888.35 . AB=0.315789;ABP=25.4108;AC=4;AF=0.666667;AN=6;AO=60;CIGAR=1X;DP=112;DPB=112;DPRA=0;EPP=133.299;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2381;QR=2048;RO=52;RPL=0;RPP=133.299;RPPR=115.927;RPR=60;RUN=1;SAF=60;SAP=133.299;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:36:0,36:0:0:36:1438:-129.674,-10.8371,0 0/1:28:15,13:15:569:13:509:-37.7235,0,-43.1133 0/1:48:37,11:37:1479:11:434:-24.9608,0,-118.909 dDocent_Contig_2570 165 . A G 273.042 . AB=0.214286;ABP=52.644;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=70;DPB=70;DPRA=0;EPP=35.5824;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=586;QR=1952;RO=55;RPL=15;RPP=35.5824;RPPR=122.441;RPR=0;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=122.441;SRR=55;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:24,4:24:858:4:154:-5.80316,0,-69.1049 0/1:17:15,2:15:520:2:82:-2.66217,0,-41.9995 0/1:25:16,9:16:574:9:350:-24.3313,0,-44.4584 dDocent_Contig_2571 36 . T G 43.0501 . AB=0.102273;ABP=123.922;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=123;DPB=123;DPRA=1.25714;EPP=22.5536;EPPR=250.558;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=368;QR=4503;RO=114;RPL=0;RPP=22.5536;RPPR=250.558;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:42,4:42:1681:4:164:-1.30252,0,-137.668 0/1:42:37,5:37:1439:5:204:-6.10077,0,-117.117 0/0:35:35,0:35:1383:0:0:0,-10.536,-124.734 dDocent_Contig_2572 63 . G C 1802.88 . AB=0.330233;ABP=56.8325;AC=3;AF=0.5;AN=6;AO=71;CIGAR=1X;DP=215;DPB=215;DPRA=0;EPP=157.185;EPPR=315.702;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2774;QR=5543;RO=144;RPL=71;RPP=157.185;RPPR=315.702;RPR=0;RUN=1;SAF=71;SAP=157.185;SAR=0;SRF=144;SRP=315.702;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:49,20:49:1900:20:780:-49.744,0,-150.454 0/1:62:50,12:50:1946:12:428:-20.1771,0,-156.685 0/1:84:45,39:45:1697:39:1566:-115.89,0,-127.702 dDocent_Contig_2573 18 . C T 253.23 . AB=0.357143;ABP=7.97367;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=97;DPB=97;DPRA=0.811594;EPP=24.725;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=388;QR=3433;RO=87;RPL=0;RPP=24.725;RPPR=191.928;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:18,10:18:722:10:388:-26.8458,0,-56.8763 0/0:45:45,0:45:1769:0:0:0,-13.5463,-159.426 0/0:24:24,0:24:942:0:0:0,-7.22472,-85.0855 dDocent_Contig_2574 99 . N G 61.7437 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=2X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=65;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:65:-6.17329,-0.60206,0 dDocent_Contig_2575 27 . T A 37.8932 . AB=0.142857;ABP=49.5419;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=95;DPB=95;DPRA=1.58491;EPP=16.0391;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=196;QR=3088;RO=89;RPL=0;RPP=16.0391;RPPR=196.271;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:36,6:36:1250:6:196:-5.31212,0,-100.147 0/0:38:38,0:38:1289:0:0:0,-11.4391,-116.287 0/0:15:15,0:15:549:0:0:0,-4.51545,-49.7439 dDocent_Contig_2576 43 . A T 116.059 . AB=0.277778;ABP=10.7311;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=59;DPB=59;DPRA=0.878049;EPP=13.8677;EPPR=118.098;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=2097;RO=53;RPL=0;RPP=13.8677;RPPR=118.098;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:12,5:12:473:5:200:-13.1288,0,-37.6991 0/0:16:16,0:16:640:0:0:0,-4.81648,-57.9351 0/0:25:25,0:25:984:0:0:0,-7.52575,-88.8483 dDocent_Contig_2577 19 . A G 308.972 . AB=0.100228;ABP=612.413;AC=3;AF=0.5;AN=6;AO=44;CIGAR=1X4M;DP=439;DPB=439;DPRA=0;EPP=90.0666;EPPR=784.74;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.477273;PAIREDR=0.741667;PAO=0;PQA=0;PQR=0;PRO=0;QA=1729;QR=14102;RO=360;RPL=0;RPP=98.5551;RPPR=784.74;RPR=44;RUN=1;SAF=43;SAP=90.0666;SAR=1;SRF=360;SRP=784.74;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:185:154,4,23:154:6007:4,23:156,903:-27.9077,-61.4432,-553.991,0,-480.93,-486.83 0|1:166:135,6,14:135:5303:6,14:235,544:-4.06342,-25.3771,-459.739,0,-416.847,-431.956 0|1:88:71,8,7:71:2792:8,7:314,282:-4.44679,0,-227.233,-2.57315,-206.397,-230.114 dDocent_Contig_2578 23 . C A 3067.61 . AB=0.492891;ABP=3.10292;AC=3;AF=0.5;AN=6;AO=104;CIGAR=1X;DP=211;DPB=211;DPRA=0;EPP=228.843;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4167;QR=4265;RO=107;RPL=0;RPP=228.843;RPPR=235.358;RPR=104;RUN=1;SAF=104;SAP=228.843;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:72:55,17:55:2178:17:681:-39.9452,0,-174.53 0/1:79:33,46:33:1327:46:1849:-142.838,0,-95.9118 0/1:60:19,41:19:760:41:1637:-129.5,0,-50.6594 dDocent_Contig_2579 14 . T A 107.899 . AB=0.08;ABP=41.3151;AC=0;AF=0;AN=6;AO=2;CIGAR=4X2M1X;DP=67;DPB=67;DPRA=1.38889;EPP=3.0103;EPPR=111.584;GTI=0;LEN=1;MEANALT=4;MQM=36;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=1949;RO=50;RPL=0;RPP=7.35324;RPPR=111.584;RPR=2;RUN=1;SAF=1;SAP=3.0103;SAR=1;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:25:13,4,5,2:13:511:4,5,2:155,201,77:-12.3072,-3.49208,-44.3268,0,-29.3163,-40.5377,-10.7011,-40.0079,-36.52,-52.1312 0|0:24:20,2,0,0:20:779:2,0,0:80,0,0:-0.580786,0,-63.4375,-6.60139,-64.0396,-70.6269,-6.60139,-64.0396,-70.6269,-70.6269 0|0:18:17,1,0,0:17:659:1,0,0:40,0,0:0,-1.42286,-55.6485,-5.11751,-55.9495,-59.2453,-5.11751,-55.9495,-59.2453,-59.2453 dDocent_Contig_2580 43 . T C 866.433 . AB=0.307692;ABP=40.5935;AC=2;AF=0.333333;AN=6;AO=36;CIGAR=1X;DP=190;DPB=190;DPRA=0.80137;EPP=81.1833;EPPR=337.417;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1386;QR=5761;RO=154;RPL=0;RPP=81.1833;RPPR=337.417;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=154;SRP=337.417;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:73:73,0:73:2716:0:0:0,-21.9752,-244.613 0/1:49:33,16:33:1200:16:617:-41.1115,0,-93.5222 0/1:68:48,20:48:1845:20:769:-49.0547,0,-145.82 dDocent_Contig_2581 18 . C A 47.3212 . AB=0.1875;ABP=16.582;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=36;DPB=36;DPRA=1.6;EPP=9.52472;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.969697;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1334;RO=33;RPL=0;RPP=9.52472;RPPR=74.6689;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:444:0:0:0,-3.31133,-40.3162 0/1:16:13,3:13:522:3:122:-6.55601,0,-42.5113 0/0:9:9,0:9:368:0:0:0,-2.70927,-33.4854 dDocent_Contig_2583 98 . N C 499.317 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=16;CIGAR=1X;DP=16;DPB=16;DPRA=0;EPP=37.7539;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=545;QR=0;RO=0;RPL=16;RPP=37.7539;RPPR=0;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:25:-2.49986,-0.30103,0 ./.:.:.:.:.:.:.:. 1/1:15:0,15:0:0:15:520:-47.129,-4.51545,0 dDocent_Contig_2584 209 . N G 150.094 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:117:-10.9097,-0.90309,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:38:-3.79727,-0.30103,0 dDocent_Contig_2585 11 . C T 123.777 . AB=0.15625;ABP=68.6973;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=64;DPB=64;DPRA=0;EPP=24.725;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.907407;PAO=0;PQA=0;PQR=0;PRO=0;QA=400;QR=2163;RO=54;RPL=0;RPP=24.725;RPPR=120.27;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:18,4:18:711:4:159:-8.06909,0,-57.6939 0/1:26:23,3:23:924:3:119:-3.26772,0,-75.6362 0/1:16:13,3:13:528:3:122:-6.55601,0,-43.05 dDocent_Contig_2586 87 . T C 51.4815 . AB=0.15;ABP=45.5712;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=50;DPB=50;DPRA=2;EPP=16.0391;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=221;QR=1337;RO=44;RPL=6;RPP=16.0391;RPPR=98.5551;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:14,2:14:429:2:73:-2.11482,0,-34.0895 0/1:24:20,4:20:606:4:148:-6.45725,0,-47.6056 0/0:10:10,0:10:302:0:0:0,-3.0103,-27.4756 dDocent_Contig_2587 47 . A G 1824.98 . AB=0.7;ABP=34.2795;AC=3;AF=0.5;AN=6;AO=63;CIGAR=1X;DP=90;DPB=90;DPRA=0;EPP=139.813;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2378;QR=1072;RO=27;RPL=0;RPP=139.813;RPPR=61.6401;RPR=63;RUN=1;SAF=63;SAP=139.813;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:12,24:12:473:24:884:-69.023,0,-32.0834 0/1:35:13,22:13:518:22:856:-66.8207,0,-36.431 0/1:19:2,17:2:81:17:638:-52.0263,0,-1.96616 dDocent_Contig_2588 171 . C T 96.0441 . AB=0.170732;ABP=41.6201;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=67;DPB=67;DPRA=0.788462;EPP=18.2106;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=271;QR=2329;RO=60;RPL=7;RPP=18.2106;RPPR=133.299;RPR=0;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=133.299;SRR=60;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:16,5:16:630:5:189:-11.0512,0,-50.7114 0/0:26:26,0:26:990:0:0:0,-7.82678,-89.3922 0/1:20:18,2:18:709:2:82:-1.75908,0,-58.1135 dDocent_Contig_2589 81 . A T 3785.9 . AB=0.0568182;ABP=153.138;AC=0;AF=0;AN=6;AO=5;CIGAR=1X3M1X;DP=195;DPB=195;DPRA=0;EPP=13.8677;EPPR=81.1833;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=168;QR=1211;RO=36;RPL=5;RPP=13.8677;RPPR=81.1833;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:56:9,0,0,0,47:9:295:0,0,0,47:0,0,0,1585:-126.081,-128.79,-152.621,-128.79,-152.621,-152.621,-128.79,-152.621,-152.621,-152.621,0,-24.1606,-24.1606,-24.1606,-10.0122 0|0:51:12,0,0,3,36:12:414:0,0,3,36:0,0,108,1239:-97.0062,-100.619,-134.253,-100.619,-134.253,-134.253,-91.8052,-125.44,-125.44,-124.537,0,-33.6224,-33.6224,-24.8072,-22.7853 0|0:88:15,5,5,0,61:15:502:5,5,0,61:173,168,0,2044:-161.027,-151.482,-190.627,-151.932,-178.522,-191.077,-165.542,-192.133,-192.582,-206.192,0,-26.5928,-27.044,-40.6556,-22.2927 dDocent_Contig_2590 14 . G A 2659.28 . AB=0.292842;ABP=174.849;AC=3;AF=0.5;AN=6;AO=135;CIGAR=1X;DP=461;DPB=461;DPRA=0;EPP=296.159;EPPR=706.567;GTI=0;LEN=1;MEANALT=1.66667;MQM=47.7704;MQMR=50.3642;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.271605;PAO=0;PQA=0;PQR=0;PRO=0;QA=5230;QR=12735;RO=324;RPL=0;RPP=296.159;RPPR=706.567;RPR=135;RUN=1;SAF=135;SAP=296.159;SAR=0;SRF=324;SRP=706.567;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:194:135,58:135:5326:58:2219:-104.573,0,-399.075 0/1:113:81,31:81:3136:31:1210:-71.9716,0,-239.095 0/1:154:108,46:108:4273:46:1801:-94.9061,0,-319.032 dDocent_Contig_2593 91 . C T 1055.96 . AB=0.488889;ABP=3.10681;AC=3;AF=0.5;AN=6;AO=44;CIGAR=1X;DP=90;DPB=90;DPRA=0;EPP=98.5551;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1525;QR=1627;RO=46;RPL=44;RPP=98.5551;RPPR=102.898;RPR=0;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:7,18:7:253:18:643:-50.6723,0,-15.594 0/1:44:26,18:26:910:18:627:-43.5093,0,-68.9681 0/1:21:13,8:13:464:8:255:-16.9373,0,-35.7759 dDocent_Contig_2595 209 . N G 73.0992 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:77:-7.30883,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_2596 1 . N G 70.2917 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:80:-7.02808,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_2599 84 . C T 119.606 . AB=0.178082;ABP=68.7196;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=114;DPB=114;DPRA=0.890244;EPP=31.2394;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=407;QR=3261;RO=101;RPL=13;RPP=31.2394;RPPR=222.329;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:29,4:29:924:4:124:-1.53373,0,-73.5219 0/0:41:41,0:41:1331:0:0:0,-12.3422,-120.078 0/1:40:31,9:31:1006:9:283:-13.7376,0,-78.7958 dDocent_Contig_2600 42 . G A 341.403 . AB=0.238095;ABP=40.5458;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X1M;DP=90;DPB=90;DPRA=1.16667;EPP=35.5824;EPPR=150.67;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=602;QR=2636;RO=68;RPL=0;RPP=35.5824;RPPR=150.67;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:34:16,7,11:16:625:7,11:278,442:-31.6095,-13.5409,-62.8062,0,-28.4858,-48.0632 0|0:27:27,0,0:27:1033:0,0:0,0:0,-8.12781,-93.2654,-8.12781,-93.2654,-93.2654 0|1:29:25,0,4:25:978:0,4:0,160:-6.05372,-13.5795,-93.9803,0,-80.7991,-79.595 dDocent_Contig_2601 13 . T C 99.4172 . AB=0.121951;ABP=104.805;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X2M1X;DP=210;DPB=210;DPRA=1.28125;EPP=24.725;EPPR=430.79;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=401;QR=7835;RO=197;RPL=0;RPP=24.725;RPPR=430.79;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=197;SRP=430.79;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:64:61,0:61:2442:0:0:0,-18.3628,-219.546 0|0:64:64,0:64:2525:0:0:0,-19.2659,-227.409 0|1:82:72,10:72:2868:10:401:-11.7656,0,-233.552 dDocent_Contig_2602 12 . T C 34568.8 . AB=0.892181;ABP=1626.18;AC=3;AF=0.5;AN=6;AO=1084;CIGAR=1X;DP=1215;DPB=1215;DPRA=0;EPP=2014.23;EPPR=229.134;GTI=0;LEN=1;MEANALT=2;MQM=59.8976;MQMR=58.315;NS=3;NUMALT=1;ODDS=0;PAIRED=0.920664;PAIREDR=0.889764;PAO=0;PQA=0;PQR=0;PRO=0;QA=42584;QR=4995;RO=127;RPL=0;RPP=2356.89;RPPR=278.787;RPR=1084;RUN=1;SAF=1043;SAP=2014.23;SAR=41;SRF=121;SRP=229.134;SRR=6;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:515:52,461:52:2056:461:18021:-1465.7,0,-24.6409 0/1:335:39,295:39:1491:295:11476:-929.813,0,-32.6757 0/1:365:36,328:36:1448:328:13087:-1066.89,0,-20.3573 dDocent_Contig_2603 16 . G C 396.463 . AB=0.424242;ABP=4.65535;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=90;DPB=90;DPRA=1.15789;EPP=33.4109;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=564;QR=3001;RO=76;RPL=0;RPP=33.4109;RPPR=168.042;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:19,14:19:753:14:564:-41.1692,0,-58.1561 0/0:37:37,0:37:1458:0:0:0,-11.1381,-131.481 0/0:20:20,0:20:790:0:0:0,-6.0206,-71.4193 dDocent_Contig_2604 11 . G A 3341.91 . AB=0.046729;ABP=193.958;AC=3;AF=0.5;AN=6;AO=5;CIGAR=1X6M2X;DP=151;DPB=151;DPRA=0;EPP=13.8677;EPPR=72.4974;GTI=0;LEN=1;MEANALT=2.5;MQM=37.2;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.8;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=139;QR=1228;RO=32;RPL=0;RPP=13.8677;RPPR=72.4974;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:44:6,37,0:6:231:37,0:1440,0:-115.883,0,-7.82416,-117.69,-18.9623,-136.655 0|1:42:9,28,3:9:343:28,3:1093,66:-84.4951,0,-19.7865,-82.9848,-24.0187,-110.219 0|1:65:17,46,2:17:654:46,2:1778,73:-139.335,0,-39.8577,-138.489,-47.7427,-191.575 dDocent_Contig_2605 12 . A C 177.108 . AB=0.242424;ABP=22.0271;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=73;DPB=73;DPRA=1.42105;EPP=22.5536;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=330;QR=2421;RO=64;RPL=0;RPP=22.5536;RPPR=141.985;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:25,8:25:969:8:320:-19.2337,0,-77.5759 0/0:19:19,0:19:701:0:0:0,-5.71957,-63.3964 0/0:21:20,1:20:751:1:10:0,-5.32163,-66.9015 dDocent_Contig_2606 22 . T C 1192.26 . AB=0.207237;ABP=229.329;AC=3;AF=0.5;AN=6;AO=63;CIGAR=1X;DP=304;DPB=304;DPRA=0;EPP=139.813;EPPR=526.335;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2393;QR=8574;RO=241;RPL=0;RPP=139.813;RPPR=526.335;RPR=63;RUN=1;SAF=63;SAP=139.813;SAR=0;SRF=241;SRP=526.335;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:107:84,23:84:3023:23:894:-48.5573,0,-240.049 0/1:118:88,30:88:3107:30:1151:-68.3393,0,-244.291 0/1:79:69,10:69:2444:10:348:-7.85248,0,-196.402 dDocent_Contig_2607 111 . G A 56.6029 . AB=0.294118;ABP=9.26925;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=41;DPB=41;DPRA=1.41667;EPP=13.8677;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=137;QR=1175;RO=36;RPL=0;RPP=13.8677;RPPR=81.1833;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=81.1833;SRR=36;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:592:0:0:0,-5.41854,-53.593 0/0:6:6,0:6:206:0:0:0,-1.80618,-18.8767 0/1:17:12,5:12:377:5:137:-7.48417,0,-29.1174 dDocent_Contig_2608 52 . A T 66.5451 . AB=0.3;ABP=6.48466;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1M1D2M1X;DP=37;DPB=36.4;DPRA=0.740741;EPP=9.52472;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=1352;RO=34;RPL=3;RPP=9.52472;RPPR=76.8404;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:10:7,3:7:276:3:120:-8.17739,0,-22.1991 0|0:17:17,0:17:675:0:0:0,-5.11751,-61.0831 0|0:10:10,0:10:401:0:0:0,-3.0103,-36.4505 dDocent_Contig_2609 42 . T C 423.105 . AB=0.0952381;ABP=32.8939;AC=0;AF=0;AN=6;AO=2;CIGAR=2X2M;DP=70;DPB=65.75;DPRA=0.875;EPP=7.35324;EPPR=113.755;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=2033;RO=51;RPL=0;RPP=7.35324;RPPR=113.755;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:25:15,10,0:15:598:10,0:378,0:-26.842,0,-46.6343,-31.3575,-49.6446,-80.6162 0|0:21:12,7,2:12:482:7,2:275,82:-18.9913,0,-37.6045,-15.8317,-32.9424,-54.954 0|0:24:24,0,0:24:953:0,0:0,0:0,-7.22472,-86.0749,-7.22472,-86.0749,-86.0749 dDocent_Contig_2611 12 . C A 6773.79 . AB=0.0652174;ABP=154.069;AC=0;AF=0;AN=6;AO=6;CIGAR=2X3M1X;DP=299;DPB=299;DPRA=0;EPP=16.0391;EPPR=57.2971;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=229;QR=990;RO=25;RPL=0;RPP=16.0391;RPPR=57.2971;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:128:12,18,4,0,90:12:476:18,4,0,90:708,156,0,3523:-299.789,-249.484,-283.249,-290.578,-275.845,-328.559,-303.402,-288.668,-329.763,-342.586,-14.7171,0,-41.083,-53.9072,-26.8145 0|0:79:7,14,4,0,54:7:276:14,4,0,54:545,160,0,2093:-191.795,-149.113,-167.607,-180.722,-158.641,-202.226,-193.903,-171.822,-203.43,-216.611,-22.0768,0,-31.604,-44.7857,-28.5301 0|0:92:6,12,17,6,50:6:238:12,17,6,50:477,645,229,1961:-191.317,-153.849,-169.83,-141.178,-121.496,-155.652,-174.338,-154.656,-141.985,-192.124,-32.3476,-12.6638,0,-33.1554,-36.8897 dDocent_Contig_2612 25 . C T 38.8491 . AB=0.116279;ABP=58.0041;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=89;DPB=89;DPRA=1.86957;EPP=13.8677;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=3373;RO=84;RPL=0;RPP=13.8677;RPPR=185.414;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:29,0:29:1170:0:0:0,-8.72987,-105.578 0/1:43:38,5:38:1512:5:203:-5.70877,0,-123.379 0/0:17:17,0:17:691:0:0:0,-5.11751,-62.5188 dDocent_Contig_2613 8 . T A 363.452 . AB=0.314815;ABP=19.0953;AC=2;AF=0.333333;AN=6;AO=19;CIGAR=1X;DP=96;DPB=96;DPRA=0;EPP=44.2683;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=694;QR=2934;RO=77;RPL=0;RPP=44.2683;RPPR=170.214;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:21,5:21:807:5:177:-8.44635,0,-65.128 0/1:28:16,12:16:593:12:439:-31.4217,0,-45.275 0/0:42:40,2:40:1534:2:78:0,-5.23979,-130.929 dDocent_Contig_2614 16 . G A 285.65 . AB=0.324324;ABP=12.9286;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=31.2394;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=511;QR=1746;RO=45;RPL=0;RPP=31.2394;RPPR=100.727;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:12,9:12:472:9:353:-25.809,0,-36.5096 0/1:16:13,3:13:496:3:119:-6.27891,0,-40.1667 0/0:21:20,1:20:778:1:39:0,-2.42507,-66.4445 dDocent_Contig_2615 137 . A C 152.292 . AB=0.25;ABP=22.5536;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=41;DPB=41;DPRA=3.6;EPP=22.5536;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.888889;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=321;QR=1131;RO=32;RPL=0;RPP=22.5536;RPPR=72.4974;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=72.4974;SRR=32;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:16,5:16:572:5:180:-10.2304,0,-45.492 0/1:15:11,4:11:380:4:141:-8.52158,0,-30.0164 0/0:5:5,0:5:179:0:0:0,-1.50515,-16.4604 dDocent_Contig_2616 7 . A T 64.9904 . AB=0.192308;ABP=24.391;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=41;DPB=41;DPRA=0.866667;EPP=13.8677;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=190;QR=1366;RO=36;RPL=0;RPP=13.8677;RPPR=81.1833;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:567:0:0:0,-4.51545,-51.3703 0/1:12:10,2:10:378:2:74:-3.41307,0,-30.7598 0/1:14:11,3:11:421:3:116:-6.60328,0,-34.0276 dDocent_Contig_2617 7 . T A 2351.98 . AB=0.40411;ABP=14.6708;AC=3;AF=0.5;AN=6;AO=59;CIGAR=1X3M1X2M;DP=146;DPB=146;DPRA=0;EPP=131.127;EPPR=57.2971;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2259;QR=971;RO=25;RPL=0;RPP=131.127;RPPR=57.2971;RPR=59;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:28:0,13,10,5:0:0:13,10,5:497,390,201:-72.8274,-32.0509,-28.1375,-40.7678,0,-37.7575,-56.2606,-15.4831,-24.1985,-54.7555 0|1:57:8,8,36,4:8:307:8,36,4:305,1373,162:-110.228,-87.6167,-110.407,0,-0.180767,-14.3605,-99.2755,-99.4551,-11.8347,-123.27 0|0:61:17,12,13,19:17:664:12,13,19:459,496,761:-57.5793,-25.0366,-76.0104,-22.0085,-38.9346,-72.681,0,-16.9285,-13.9002,-48.8708 dDocent_Contig_2618 60 . T C 1030.23 . AB=0.280255;ABP=68.8599;AC=3;AF=0.5;AN=6;AO=44;CIGAR=1X;DP=157;DPB=157;DPRA=0;EPP=98.5551;EPPR=248.387;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1720;QR=4469;RO=113;RPL=44;RPP=98.5551;RPPR=248.387;RPR=0;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=113;SRP=248.387;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:43,22:43:1703:22:859:-58.0527,0,-133.928 0/1:29:22,7:22:880:7:270:-15.9328,0,-70.7779 0/1:63:48,15:48:1886:15:591:-34.5604,0,-150.983 dDocent_Contig_2619 79 . G A 110.103 . AB=0.3125;ABP=7.89611;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=2X;DP=48;DPB=48;DPRA=2.5;EPP=18.2106;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=262;QR=1422;RO=40;RPL=7;RPP=18.2106;RPPR=89.8692;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:8:8,0:8:283:0:0:0,-2.40824,-25.8108 0|1:16:11,5:11:398:5:192:-12.8337,0,-31.3441 0|0:24:21,2:21:741:2:70:0,-0.440213,-60.4426 dDocent_Contig_2621 24 . C T 845.6 . AB=0.142857;ABP=18.5208;AC=0;AF=0;AN=6;AO=2;CIGAR=1X2M2D1M;DP=62;DPB=51;DPRA=0;EPP=7.35324;EPPR=65.983;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.965517;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=1065;RO=29;RPL=0;RPP=7.35324;RPPR=65.983;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:24:11,0,13:11:392:0,13:0,491:-37.31,-40.6214,-72.5576,0,-32.3021,-28.3887 0|0:24:11,0,13:11:408:0,13:0,505:-38.5719,-41.8832,-75.259,0,-33.7544,-29.841 0|0:14:7,2,5:7:265:2,5:76,198:-14.201,-10.0802,-31.1927,0,-15.4907,-20.2184 dDocent_Contig_2622 38 . G T 233.223 . AB=0.261905;ABP=23.691;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=42;DPB=42;DPRA=0;EPP=26.8965;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=428;QR=1188;RO=31;RPL=0;RPP=26.8965;RPPR=70.3259;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:12,1:12:452:1:41:-0.181177,0,-37.1099 0/1:12:7,5:7:276:5:190:-13.8547,0,-21.5971 0/1:17:12,5:12:460:5:197:-12.9883,0,-36.6322 dDocent_Contig_2624 19 . A G 3527.31 . AB=0.592965;ABP=17.9487;AC=3;AF=0.5;AN=6;AO=118;CIGAR=1X;DP=199;DPB=199;DPRA=0;EPP=259.244;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4638;QR=3228;RO=81;RPL=0;RPP=259.244;RPPR=178.9;RPR=118;RUN=1;SAF=118;SAP=259.244;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:78:31,47:31:1233:47:1823:-140.817,0,-87.7574 0/1:65:29,36:29:1153:36:1425:-108.939,0,-84.4854 0/1:56:21,35:21:842:35:1390:-108.498,0,-59.2354 dDocent_Contig_2626 83 . G C 464.13 . AB=0.220588;ABP=95.234;AC=3;AF=0.5;AN=6;AO=30;CIGAR=1X;DP=136;DPB=136;DPRA=0;EPP=68.1545;EPPR=233.186;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1021;QR=3593;RO=106;RPL=30;RPP=68.1545;RPPR=233.186;RPR=0;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:28,13:28:953:13:451:-28.5795,0,-73.7394 0/1:44:36,8:36:1194:8:269:-11.2933,0,-94.5137 0/1:51:42,9:42:1446:9:301:-12.063,0,-115.085 dDocent_Contig_2627 29 . G A 2209.32 . AB=0.543478;ABP=5.27618;AC=3;AF=0.5;AN=6;AO=75;CIGAR=1X;DP=138;DPB=138;DPRA=0;EPP=165.871;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2968;QR=2515;RO=63;RPL=0;RPP=165.871;RPPR=139.813;RPR=75;RUN=1;SAF=75;SAP=165.871;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:11,16:11:443:16:643:-50.0772,0,-32.0974 0/1:38:19,19:19:761:19:722:-53.846,0,-57.3741 0/1:73:33,40:33:1311:40:1603:-122.532,0,-96.2801 dDocent_Contig_2628 16 . T A 1173.53 . AB=0.24878;ABP=115.387;AC=3;AF=0.5;AN=6;AO=51;CIGAR=1X;DP=205;DPB=205;DPRA=0;EPP=113.755;EPPR=337.417;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2040;QR=6162;RO=154;RPL=0;RPP=113.755;RPPR=337.417;RPR=51;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=154;SRP=337.417;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:79:50,29:50:1998:29:1161:-80.9901,0,-156.235 0/1:56:43,13:43:1700:13:520:-30.2884,0,-136.367 0/1:70:61,9:61:2464:9:359:-11.5976,0,-200.823 dDocent_Contig_2629 98 . N A 383.799 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=13;CIGAR=4X;DP=13;DPB=13;DPRA=0;EPP=31.2394;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=416;QR=0;RO=0;RPL=13;RPP=31.2394;RPPR=0;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,3:0:0:3:100:-9.33066,-0.90309,0 .:.:.:.:.:.:.:. 1|1:10:0,10:0:0:10:316:-28.748,-3.0103,0 dDocent_Contig_2630 8 . C T 771.388 . AB=0.177778;ABP=246.505;AC=1;AF=0.166667;AN=6;AO=48;CIGAR=1X1M2X2M1X;DP=270;DPB=271.857;DPRA=0;EPP=107.241;EPPR=248.387;GTI=0;LEN=1;MEANALT=10.3333;MQM=25;MQMR=49.7345;NS=3;NUMALT=4;ODDS=5.55112e-17;PAIRED=0;PAIREDR=0.654867;PAO=0;PQA=0;PQR=0;PRO=0.25;QA=1822;QR=4347;RO=113;RPL=0;RPP=107.241;RPPR=248.387;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=113;SRP=248.387;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:108:39,19,6,6,20:39:1499:19,6,6,20:712,30,208,732:-45.17,-20.3576,-133.632,-57.2624,-139.701,-174.441,-41.5382,-123.983,-160.88,-158.727,0,-82.4628,-119.36,-103.643,-112.991 0|0:73:31,14,0,0,12:31:1190:14,0,0,12:527,0,0,410:-21.4481,-3.81891,-80.712,-30.78,-84.9264,-111.882,-30.78,-84.9264,-111.882,-111.882,0,-54.1659,-81.1209,-81.1209,-77.5086 0|1:89:43,15,6,0,5:43:1658:15,6,0,5:583,30,0,194:-16.0436,0,-112.215,-29.3512,-117.083,-144.257,-28.9879,-116.731,-146.063,-145.715,-13.467,-101.219,-130.552,-130.204,-128.699 dDocent_Contig_2632 165 . A T 2432.27 . AB=0.594406;ABP=14.0803;AC=3;AF=0.5;AN=6;AO=85;CIGAR=1X;DP=143;DPB=143;DPRA=0;EPP=187.585;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3233;QR=2319;RO=58;RPL=85;RPP=187.585;RPPR=128.956;RPR=0;RUN=1;SAF=0;SAP=187.585;SAR=85;SRF=0;SRP=128.956;SRR=58;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:5,37:5:200:37:1438:-117.03,0,-5.73628 0/1:67:29,38:29:1166:38:1426:-108.41,0,-85.0508 0/1:34:24,10:24:953:10:369:-23.3105,0,-75.8351 dDocent_Contig_2633 7 . A G 8576.53 . AB=0.0960591;ABP=578.418;AC=1;AF=0.166667;AN=6;AO=39;CIGAR=1X3M1X;DP=406;DPB=406;DPRA=0;EPP=87.6977;EPPR=83.3548;GTI=0;LEN=1;MEANALT=4.66667;MQM=59.5385;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0.897436;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1382;QR=1416;RO=37;RPL=0;RPP=87.6977;RPPR=83.3548;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:133:15,5,5,84,24:15:573:5,5,84,24:188,190,3277,934:-294.586,-283.715,-329.223,-283.523,-315.149,-329.03,-29.7428,-61.369,-61.1766,-51.4684,-222.351,-253.977,-253.785,0,-262.139 1|0:162:11,24,19,89,17:11:423:24,19,89,17:872,747,3477,674:-318.976,-251.107,-278.609,-260.844,-224.391,-289.853,-36.4479,0,-9.72987,-44.3846,-266.809,-230.356,-240.093,-15.6942,-296.419 0|0:111:11,10,6,77,7:11:420:10,6,77,7:322,244,3071,281:-249.613,-226.974,-258.42,-232.798,-241.304,-265.449,0,-8.52558,-14.3296,-11.2838,-229.77,-238.277,-244.101,-11.3019,-262.121 dDocent_Contig_2634 98 . N A 2075.14 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=71;CIGAR=1X;DP=71;DPB=71;DPRA=0;EPP=124.399;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=56.6338;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.619718;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2321;QR=0;RO=0;RPL=71;RPP=157.185;RPPR=0;RPR=0;RUN=1;SAF=67;SAP=124.399;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:29:0,29:0:0:29:938:-84.678,-8.72987,0 1/1:29:0,29:0:0:29:964:-84.2703,-8.72987,0 1/1:13:0,13:0:0:13:419:-37.9638,-3.91339,0 dDocent_Contig_2635 142 . C A 156.794 . AB=0.3;ABP=13.4334;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=107;DPB=107;DPRA=0.779221;EPP=22.5536;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.989796;PAO=0;PQA=0;PQR=0;PRO=0;QA=288;QR=3078;RO=98;RPL=0;RPP=22.5536;RPPR=215.815;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=215.815;SRR=98;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:21,9:21:635:9:288:-17.2023,0,-48.4066 0/0:28:28,0:28:845:0:0:0,-8.42884,-76.3324 0/0:49:49,0:49:1598:0:0:0,-14.7505,-144.102 dDocent_Contig_2636 7 . A C 108.12 . AB=0.2;ABP=18.6449;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X3M;DP=44;DPB=44;DPRA=1.66667;EPP=11.6962;EPPR=79.0118;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=150;QR=1307;RO=35;RPL=0;RPP=11.6962;RPPR=79.0118;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:16:16,0,0:16:589:0,0:0,0:0,-4.81648,-53.3425,-4.81648,-53.3425,-53.3425 0|1:20:11,5,4:11:413:5,4:194,150:-12.6359,0,-32.3286,-3.66602,-21.547,-36.2868 0|0:8:8,0,0:8:305:0,0:0,0:0,-2.40824,-27.8099,-2.40824,-27.8099,-27.8099 dDocent_Contig_2638 12 . C T 2384.43 . AB=0.639344;ABP=23.5859;AC=3;AF=0.5;AN=6;AO=78;CIGAR=1X;DP=122;DPB=122;DPRA=0;EPP=172.385;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3109;QR=1767;RO=44;RPL=0;RPP=172.385;RPPR=98.5551;RPR=78;RUN=1;SAF=78;SAP=172.385;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:60:24,36:24:965:36:1439:-111.703,0,-69.0883 0/1:32:11,21:11:445:21:828:-65.2027,0,-30.7733 0/1:30:9,21:9:357:21:842:-67.06,0,-23.4606 dDocent_Contig_2639 29 . G T 30.5119 . AB=0.125;ABP=42.0968;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=138;DPB=138;DPRA=0.603774;EPP=11.6962;EPPR=293.988;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=5187;RO=134;RPL=0;RPP=11.6962;RPPR=293.988;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=134;SRP=293.988;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:64:64,0:64:2435:0:0:0,-19.2659,-219.342 0/1:32:28,4:28:1091:4:157:-4.87472,0,-88.8476 0/0:42:42,0:42:1661:0:0:0,-12.6433,-149.729 dDocent_Contig_2640 9 . A G 797.451 . AB=0.277778;ABP=57.0558;AC=2;AF=0.333333;AN=6;AO=35;CIGAR=1X;DP=178;DPB=178;DPRA=1.21154;EPP=79.0118;EPPR=313.531;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1340;QR=5485;RO=143;RPL=0;RPP=79.0118;RPPR=313.531;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=143;SRP=313.531;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:52:52,0:52:1994:0:0:0,-15.6536,-179.699 0/1:39:35,4:35:1339:4:147:-1.8474,0,-109.056 0/1:87:56,31:56:2152:31:1193:-81.4775,0,-167.719 dDocent_Contig_2641 55 . C A 85.0951 . AB=0.235294;ABP=13.3567;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=54;DPB=54;DPRA=0.918919;EPP=11.6962;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=2001;RO=50;RPL=4;RPP=11.6962;RPPR=111.584;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:13,4:13:522:4:164:-10.0324,0,-42.2079 0/0:18:18,0:18:722:0:0:0,-5.41854,-65.3066 0/0:19:19,0:19:757:0:0:0,-5.71957,-68.4503 dDocent_Contig_2642 18 . C A 1129.11 . AB=0.532468;ABP=3.71532;AC=3;AF=0.5;AN=6;AO=41;CIGAR=1X;DP=77;DPB=77;DPRA=0;EPP=92.0407;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.926829;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1562;QR=1434;RO=36;RPL=0;RPP=92.0407;RPPR=81.1833;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:11,30:11:444:30:1130:-89.6398,0,-27.9736 0/1:22:14,8:14:540:8:311:-21.7281,0,-42.318 0/1:14:11,3:11:450:3:121:-7.06557,0,-36.6414 dDocent_Contig_2644 119 . C A 43.8596 . AB=0.210526;ABP=16.8392;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=64;DPB=64;DPRA=0.844444;EPP=11.6962;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=129;QR=1860;RO=59;RPL=0;RPP=11.6962;RPPR=131.127;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=131.127;SRR=59;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:22,0:22:670:0:0:0,-6.62266,-60.2473 0/0:22:22,0:22:676:0:0:0,-6.62266,-61.1296 0/1:19:15,4:15:514:4:129:-6.20985,0,-40.8666 dDocent_Contig_2645 18 . C T 64.4529 . AB=0.091954;ABP=128.831;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=7M1X2M1X;DP=134;DPB=133.091;DPRA=0.925532;EPP=20.3821;EPPR=217.986;GTI=0;LEN=1;MEANALT=7;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=318;QR=3899;RO=99;RPL=0;RPP=20.3821;RPPR=217.986;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:47:42,1,0,0,0,0:42:1654:1,0,0,0,0:40,0,0,0,0:0,-9.34669,-145.116,-12.6433,-145.417,-148.712,-12.6433,-145.417,-148.712,-148.712,-12.6433,-145.417,-148.712,-148.712,-148.712,-12.6433,-145.417,-148.712,-148.712,-148.712,-148.712 0|0:34:17,4,2,4,3,2:17:663:4,2,4,3,2:161,65,160,120,81:-8.15454,0,-53.2875,-8.03715,-49.2523,-61.9203,-0.0897599,-41.3099,-49.3416,-53.3768,-3.38587,-44.6058,-52.6373,-44.6952,-56.9736,-6.59129,-47.8113,-55.8426,-47.9007,-51.1965,-60.4801 0|1:53:40,2,0,4,2,2:40:1582:2,0,4,2,2:81,0,158,82,80:-0.967019,-6.32453,-135.93,-13.0082,-136.532,-143.212,0,-123.53,-130.21,-129.006,-6.23463,-129.763,-136.443,-123.441,-135.841,-6.41463,-129.942,-136.621,-123.62,-129.852,-136.019 dDocent_Contig_2646 114 . C T 1849.33 . AB=0.755319;ABP=56.2345;AC=3;AF=0.5;AN=6;AO=71;CIGAR=1X;DP=94;DPB=94;DPRA=0;EPP=157.185;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2417;QR=758;RO=23;RPL=0;RPP=157.185;RPPR=52.9542;RPR=71;RUN=1;SAF=0;SAP=157.185;SAR=71;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:3,22:3:100:22:765:-61.646,0,-1.80478 0/1:34:14,20:14:469:20:668:-50.1983,0,-32.2952 0/1:35:6,29:6:189:29:984:-78.3323,0,-6.78388 dDocent_Contig_2647 7 . A G 346.769 . AB=0.235294;ABP=65.0889;AC=2;AF=0.333333;AN=6;AO=25;CIGAR=1X;DP=145;DPB=145;DPRA=0;EPP=22.5536;EPPR=252.803;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.64;PAIREDR=0.983193;PAO=0;PQA=0;PQR=0;PRO=0;QA=774;QR=4432;RO=119;RPL=0;RPP=57.2971;RPPR=261.416;RPR=25;RUN=1;SAF=20;SAP=22.5536;SAR=5;SRF=118;SRP=252.803;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:24,12:24:881:12:383:-23.9386,0,-68.7618 0/0:43:42,1:42:1553:1:17:0,-11.2443,-138.344 0/1:66:53,12:53:1998:12:374:-14.2611,0,-160.38 dDocent_Contig_2648 93 . C T 186.201 . AB=0.157025;ABP=126.641;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=121;DPB=121;DPRA=0;EPP=44.2683;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=660;QR=3483;RO=102;RPL=19;RPP=44.2683;RPPR=224.5;RPR=0;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:23,3:23:797:3:105:-1.96938,0,-64.2231 0/1:61:50,11:50:1695:11:383:-16.4422,0,-134.474 0/1:34:29,5:29:991:5:172:-5.5833,0,-79.2641 dDocent_Contig_2650 140 . A C 270.984 . AB=0.291667;ABP=21.1059;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=48;DPB=48;DPRA=0;EPP=33.4109;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.911765;PAO=0;PQA=0;PQR=0;PRO=0;QA=511;QR=1285;RO=34;RPL=0;RPP=33.4109;RPPR=76.8404;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=76.8404;SRR=34;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:12,7:12:459:7:245:-16.6675,0,-35.9399 0/1:12:8,4:8:294:4:149:-10.1609,0,-23.1972 0/1:17:14,3:14:532:3:117:-5.79287,0,-43.1043 dDocent_Contig_2651 75 . C A 3230.52 . AB=0.717105;ABP=65.2401;AC=3;AF=0.5;AN=6;AO=109;CIGAR=1X;DP=152;DPB=152;DPRA=0;EPP=239.701;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4148;QR=1613;RO=42;RPL=109;RPP=239.701;RPPR=94.2121;RPR=0;RUN=1;SAF=109;SAP=239.701;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:63:24,38:24:923:38:1474:-114.167,0,-64.6184 0/1:45:13,32:13:492:32:1181:-93.0247,0,-31.0665 0/1:44:5,39:5:198:39:1493:-121.383,0,-4.95168 dDocent_Contig_2652 159 . T C 4489.2 . AB=0.703488;ABP=64.872;AC=4;AF=0.666667;AN=6;AO=146;CIGAR=1X;DP=198;DPB=198;DPRA=0;EPP=224.382;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5641;QR=2044;RO=52;RPL=134;RPP=224.382;RPPR=115.927;RPR=12;RUN=1;SAF=0;SAP=320.045;SAR=146;SRF=0;SRP=115.927;SRR=52;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:11,36:11:446:36:1420:-113.908,0,-26.3478 1/1:26:1,25:1:41:25:954:-82.0643,-3.73221,0 0/1:125:40,85:40:1557:85:3267:-256.471,0,-102.743 dDocent_Contig_2654 12 . T C 3343.68 . AB=0.597826;ABP=18.305;AC=3;AF=0.5;AN=6;AO=110;CIGAR=1M1X5M1X;DP=184;DPB=182.75;DPRA=0;EPP=241.872;EPPR=113.755;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4278;QR=2011;RO=51;RPL=0;RPP=241.872;RPPR=113.755;RPR=110;RUN=1;SAF=110;SAP=241.872;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:72:15,50,0,0,7:15:589:50,0,0,7:1965,0,0,284:-157.093,0,-33.382,-161.608,-48.4335,-210.05,-161.608,-48.4335,-210.05,-210.05,-138.186,-25.0084,-186.628,-186.628,-184.521 1|0:46:4,34,5,0,2:4:150:34,5,0,2:1312,195,0,81:-110.268,-3.75142,-5.79642,-95.4428,0,-106.222,-111.472,-16.0314,-107.727,-123.757,-104.792,-9.34864,-101.047,-117.077,-116.475 0|1:66:32,26,0,7,1:32:1272:26,0,7,1:1001,0,279,41:-72.5303,0,-96.8965,-82.1632,-104.723,-186.893,-59.1852,-81.7477,-163.917,-161.81,-78.7785,-101.339,-183.508,-160.532,-183.207 dDocent_Contig_2656 197 . A G 195.548 . AB=0.30303;ABP=14.1309;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=46;DPB=46;DPRA=1.26923;EPP=24.725;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=359;QR=1338;RO=36;RPL=10;RPP=24.725;RPPR=81.1833;RPR=0;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=81.1833;SRR=36;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:14,7:14:506:7:248:-16.3366,0,-39.5473 0/1:12:9,3:9:337:3:111:-6.74113,0,-27.0681 0/0:13:13,0:13:495:0:0:0,-3.91339,-44.8954 dDocent_Contig_2657 14 . C A 2630.15 . AB=0.314371;ABP=102.976;AC=3;AF=0.5;AN=6;AO=105;CIGAR=1X;DP=334;DPB=334;DPRA=0;EPP=231.015;EPPR=500.277;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.991266;PAO=0;PQA=0;PQR=0;PRO=0;QA=4092;QR=9041;RO=229;RPL=0;RPP=231.015;RPPR=500.277;RPR=105;RUN=1;SAF=105;SAP=231.015;SAR=0;SRF=229;SRP=500.277;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:158:83,75:83:3268:75:2931:-216.355,0,-246.63 0/1:99:81,18:81:3192:18:703:-33.7961,0,-257.562 0/1:77:65,12:65:2581:12:458:-18.3866,0,-209.244 dDocent_Contig_2658 25 . G A 41.1218 . AB=0.133333;ABP=38.0434;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=126;DPB=126;DPRA=1.35294;EPP=18.2106;EPPR=261.416;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=285;QR=4659;RO=119;RPL=0;RPP=18.2106;RPPR=261.416;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=119;SRP=261.416;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:62:59,3:59:2276:3:123:0,-7.19907,-193.555 0/0:34:34,0:34:1337:0:0:0,-10.235,-120.596 0/1:30:26,4:26:1046:4:162:-5.93606,0,-85.4012 dDocent_Contig_2660 12 . G A 2384.14 . AB=0.719626;ABP=47.84;AC=3;AF=0.5;AN=6;AO=77;CIGAR=1X;DP=107;DPB=107;DPRA=0;EPP=170.214;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3038;QR=1203;RO=30;RPL=0;RPP=170.214;RPPR=68.1545;RPR=77;RUN=1;SAF=77;SAP=170.214;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:13,12:13:523:12:466:-34.7613,0,-39.8886 0/1:34:13,21:13:522:21:821:-63.9653,0,-37.0925 0/1:48:4,44:4:158:44:1751:-143.357,0,-0.149216 dDocent_Contig_2661 15 . T A 1594.89 . AB=0.101796;ABP=233.017;AC=0;AF=0;AN=6;AO=17;CIGAR=1X2M1X3M;DP=167;DPB=167;DPRA=0;EPP=39.9253;EPPR=163.699;GTI=0;LEN=1;MEANALT=3.66667;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=679;QR=2941;RO=74;RPL=0;RPP=39.9253;RPPR=163.699;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:51:24,5,1,0,19:24:952:5,1,0,19:200,41,0,771:-56.3627,-47.1135,-123.968,-60.2031,-122.089,-138.263,-63.5874,-125.473,-138.564,-141.948,0,-61.8848,-74.9757,-78.3601,-72.6406 0|0:65:25,11,0,4,22:25:997:11,0,4,22:439,0,161,890:-65.8568,-37.2286,-116.021,-73.3825,-119.332,-155.487,-60.1134,-106.063,-142.218,-141.014,0,-45.9496,-82.1048,-68.8354,-75.4821 0|0:51:25,1,10,0,15:25:992:1,10,0,15:40,403,0,610:-42.7925,-47.0234,-128.378,-17.1019,-95.4609,-95.7457,-50.3183,-128.679,-98.756,-131.974,0,-78.3606,-48.4365,-81.6557,-77.1403 dDocent_Contig_2662 10 . G A 3619.93 . AB=0.682081;ABP=52.8286;AC=3;AF=0.5;AN=6;AO=118;CIGAR=1X;DP=173;DPB=173;DPRA=0;EPP=259.244;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.991525;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4654;QR=2129;RO=55;RPL=0;RPP=259.244;RPPR=122.441;RPR=118;RUN=1;SAF=118;SAP=259.244;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:18,53:18:707:53:2091:-167.012,0,-42.5837 0/1:66:18,48:18:691:48:1894:-150.807,0,-42.6435 0/1:36:19,17:19:731:17:669:-49.697,0,-55.2678 dDocent_Contig_2663 12 . G A 2993.83 . AB=0.497561;ABP=3.02089;AC=3;AF=0.5;AN=6;AO=102;CIGAR=1X;DP=205;DPB=205;DPRA=0;EPP=224.5;EPPR=226.672;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4065;QR=4134;RO=103;RPL=0;RPP=224.5;RPPR=226.672;RPR=102;RUN=1;SAF=102;SAP=224.5;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:40,31:40:1609:31:1210:-87.7947,0,-123.67 0/1:50:27,23:27:1083:23:929:-68.8618,0,-82.7067 0/1:84:36,48:36:1442:48:1926:-148.249,0,-104.74 dDocent_Contig_2664 10 . G A 37710 . AB=0.787462;ABP=1411.24;AC=3;AF=0.5;AN=6;AO=1545;CIGAR=1X;DP=1962;DPB=1962;DPRA=0;EPP=1910.57;EPPR=687.045;GTI=0;LEN=1;MEANALT=1.33333;MQM=40.1935;MQMR=49.0433;NS=3;NUMALT=1;ODDS=1.11022e-16;PAIRED=0.149515;PAIREDR=0.0360577;PAO=0;PQA=0;PQR=0;PRO=0;QA=61043;QR=16404;RO=416;RPL=0;RPP=3357.94;RPPR=906.343;RPR=1545;RUN=1;SAF=1355;SAP=1910.57;SAR=190;SRF=389;SRP=687.045;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:632:140,491:140:5485:491:19379:-1188.6,0,-271.157 0/1:780:138,642:138:5411:642:25238:-1729.83,0,-236.96 0/1:550:138,412:138:5508:412:16426:-858.091,0,-303.51 dDocent_Contig_2666 99 . N T 625.579 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=20;CIGAR=1X16I6X;DP=22;DPB=83.7143;DPRA=0;EPP=46.4397;EPPR=0;GTI=0;LEN=1;MEANALT=1.33333;MQM=53.1;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.85;PAIREDR=0;PAO=100;PQA=3337;PQR=0;PRO=0;QA=730;QR=0;RO=0;RPL=20;RPP=46.4397;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=46.4397;SAR=20;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:7:0,5:0:0:5:181:-14.0292,-1.50515,0 1|1:12:0,12:0:0:12:436:-39.218,-3.61236,0 1|1:3:0,3:0:0:3:113:-8.70847,-0.90309,0 dDocent_Contig_2670 97 . C T 181.135 . AB=0.230769;ABP=35.7494;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=74;DPB=74;DPRA=1.18182;EPP=29.068;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=407;QR=2052;RO=62;RPL=12;RPP=29.068;RPPR=137.642;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:30,8:30:1008:8:276:-13.7368,0,-79.5879 0/0:22:22,0:22:725:0:0:0,-6.62266,-65.5596 0/1:14:10,4:10:319:4:131:-7.89964,0,-24.8043 dDocent_Contig_2671 8 . T C 1206.08 . AB=0.0422535;ABP=261.446;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=3X1M1X1M1X2M2X;DP=155;DPB=155;DPRA=5.46154;EPP=16.0391;EPPR=211.472;GTI=0;LEN=1;MEANALT=4;MQM=55;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=3768;RO=96;RPL=0;RPP=16.0391;RPPR=211.472;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:93:50,0,2,39:50:1960:0,2,39:0,76,1543:-112.004,-127.056,-288.238,-120.834,-282.016,-281.414,0,-161.253,-155.031,-149.513 0|1:49:35,7,4,2:35:1382:7,4,2:276,158,78:-12.1253,0,-111.623,-9.68695,-100.758,-122.211,-16.2495,-107.319,-117.004,-129.374 0|0:13:11,0,0,1:11:426:0,0,1:0,0,37:0,-3.31133,-38.3272,-3.31133,-38.3272,-38.3272,-0.274353,-35.3013,-35.3013,-35.0002 dDocent_Contig_2672 11 . G A 344.433 . AB=0.142857;ABP=49.5419;AC=0;AF=0;AN=6;AO=6;CIGAR=4M2X1M2X2M9I2M;DP=95;DPB=115.154;DPRA=0;EPP=16.0391;EPPR=70.3259;GTI=0;LEN=1;MEANALT=6;MQM=9;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.967742;PAO=0;PQA=0;PQR=0;PRO=0;QA=54;QR=1193;RO=31;RPL=0;RPP=16.0391;RPPR=70.3259;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:42:11,11,4,6:11:422:11,4,6:382,28,54:-26.9899,0,-31.4067,-29.9309,-34.35,-63.4035,-28.7584,-33.179,-63.0688,-61.6276 0|0:19:6,4,2,0:6:231:4,2,0:153,14,0:-10.7677,0,-17.7953,-12.4272,-18.8461,-30.7941,-12.5739,-18.9994,-31.3962,-31.559 0|0:34:14,2,1,0:14:540:2,1,0:77,6,0:-2.10819,0,-43.7685,-6.31776,-44.3603,-50.3775,-6.32261,-44.3706,-50.6785,-50.6893 dDocent_Contig_2673 26 . G A 2512.98 . AB=0.533742;ABP=4.62225;AC=3;AF=0.5;AN=6;AO=87;CIGAR=1X;DP=163;DPB=163;DPRA=0;EPP=191.928;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3389;QR=3006;RO=76;RPL=0;RPP=191.928;RPPR=168.042;RPR=87;RUN=1;SAF=87;SAP=191.928;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:25,33:25:996:33:1273:-97.3932,0,-72.4802 0/1:49:23,26:23:902:26:1006:-76.0918,0,-66.7368 0/1:56:28,28:28:1108:28:1110:-83.3359,0,-83.1424 dDocent_Contig_2675 8 . C T 3299.01 . AB=0.268908;ABP=113.409;AC=2;AF=0.333333;AN=6;AO=64;CIGAR=2X3M1X3M1X;DP=238;DPB=241;DPRA=0;EPP=141.985;EPPR=120.27;GTI=0;LEN=1;MEANALT=4.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.12963;PAO=0;PQA=0;PQR=0;PRO=0;QA=2437;QR=2061;RO=54;RPL=0;RPP=141.985;RPPR=120.27;RPR=64;RUN=1;SAF=64;SAP=141.985;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:70:18,16,0,33:18:679:16,0,33:611,0,1245:-96.596,-51.8813,-102.711,-102.015,-107.527,-157.659,0,-5.51105,-55.6471,-45.7131 1|0:66:6,16,6,34:6:223:16,6,34:596,223,1318:-137.008,-90.0331,-103.464,-120.564,-90.0308,-137.006,-30.536,0,-30.5337,-38.5497 1|0:102:30,32,6,33:30:1159:32,6,33:1230,234,1279:-101.82,-9.87156,-95.4313,-91.6146,-85.8285,-185,-5.78574,0,-81.7437,-91.0457 dDocent_Contig_2676 106 . N A 395.878 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=12;CIGAR=2X;DP=12;DPB=12;DPRA=0;EPP=29.068;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=423;QR=0;RO=0;RPL=0;RPP=29.068;RPPR=0;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:6:0,6:0:0:6:209:-19.1509,-1.80618,0 1|1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1|1:5:0,5:0:0:5:179:-16.4604,-1.50515,0 dDocent_Contig_2677 9 . A G 56.8152 . AB=0.272727;ABP=7.94546;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=2X1M1X1M1X;DP=29;DPB=29;DPRA=1.22222;EPP=9.52472;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=54;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=113;QR=1012;RO=26;RPL=0;RPP=9.52472;RPPR=59.4686;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:11:8,3:8:311:3:113:-7.20439,0,-25.0418 0|0:11:11,0:11:429:0:0:0,-3.31133,-38.9647 0|0:7:7,0:7:272:0:0:0,-2.10721,-24.8461 dDocent_Contig_2678 10 . G A 1140.78 . AB=0.262295;ABP=92.8238;AC=3;AF=0.5;AN=6;AO=48;CIGAR=1X1M;DP=183;DPB=183;DPRA=0;EPP=107.241;EPPR=259.244;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1886;QR=4561;RO=118;RPL=0;RPP=107.241;RPPR=259.244;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=118;SRP=259.244;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:91:61,7,23:61:2359:7,23:277,891:-54.8188,-50.383,-242.01,0,-170.929,-186.803 0|1:32:18,3,11:18:685:3,11:117,439:-30.7432,-26.5465,-81.8115,0,-46.5529,-52.8601 0|1:60:39,7,14:39:1517:7,14:269,556:-34.0388,-23.7039,-146.241,0,-102.576,-120.44 dDocent_Contig_2679 41 . C T 2159.96 . AB=0.336;ABP=61.4142;AC=3;AF=0.5;AN=6;AO=84;CIGAR=1X;DP=250;DPB=250;DPRA=0;EPP=185.414;EPPR=363.475;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3288;QR=6481;RO=166;RPL=0;RPP=185.414;RPPR=363.475;RPR=84;RUN=1;SAF=84;SAP=185.414;SAR=0;SRF=166;SRP=363.475;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:85:68,17:68:2650:17:666:-34.6811,0,-213.048 0/1:63:33,30:33:1289:30:1165:-86.165,0,-97.3155 0/1:102:65,37:65:2542:37:1457:-100.673,0,-198.214 dDocent_Contig_2680 14 . C A 820.234 . AB=0.270833;ABP=24.906;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X2M1X;DP=122;DPB=122;DPRA=2.4;EPP=31.2394;EPPR=185.414;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=513;QR=3244;RO=84;RPL=0;RPP=31.2394;RPPR=185.414;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:48:30,13,5:30:1178:13,5:513,201:-33.1726,0,-92.9642,-25.6381,-80.3129,-121.017 0|0:20:19,0,0:19:727:0,0:0,0:0,-5.71957,-65.364,-5.71957,-65.364,-65.364 0|0:54:35,0,19:35:1339:0,19:0,759:-52.3738,-62.9098,-172.756,0,-110.24,-104.52 dDocent_Contig_2682 98 . N C 319.126 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=26.8965;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.363636;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=339;QR=0;RO=0;RPL=11;RPP=26.8965;RPPR=0;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:168:-15.451,-1.50515,0 1/1:4:0,4:0:0:4:103:-9.52608,-1.20412,0 1/1:2:0,2:0:0:2:68:-6.45788,-0.60206,0 dDocent_Contig_2684 1 . N G 77.8076 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_2685 17 . G C 5438.1 . AB=0.776786;ABP=77.5383;AC=4;AF=0.666667;AN=6;AO=169;CIGAR=1X;DP=200;DPB=200;DPRA=0;EPP=369.989;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6682;QR=1202;RO=31;RPL=0;RPP=369.989;RPPR=70.3259;RPR=169;RUN=1;SAF=169;SAP=369.989;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:88:6,82:6:228:82:3212:-268.3,-5.60842,0 0/1:55:16,39:16:629:39:1544:-122.648,0,-40.3911 0/1:57:9,48:9:345:48:1926:-156.384,0,-14.2469 dDocent_Contig_2686 21 . T A 205.135 . AB=0.215686;ABP=38.8183;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=80;DPB=80;DPRA=0.87931;EPP=26.8965;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=59.6364;MQMR=59.971;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=429;QR=2712;RO=69;RPL=0;RPP=26.8965;RPPR=152.842;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:29,0:29:1130:0:0:0,-8.72987,-101.982 0/1:34:25,9:25:1003:9:347:-21.3438,0,-80.3324 0/1:17:15,2:15:579:2:82:-2.66217,0,-47.3247 dDocent_Contig_2687 59 . C T 34.7096 . AB=0.157895;ABP=22.325;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=2X;DP=38;DPB=38;DPRA=0.5;EPP=9.52472;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1402;RO=35;RPL=3;RPP=9.52472;RPPR=79.0118;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:9:7,2:7:282:2:81:-4.97646,0,-23.0437 0|0:19:19,0:19:756:0:0:0,-5.71957,-68.3623 0|1:10:9,1:9:364:1:41:-1.08427,0,-30.1145 dDocent_Contig_2688 27 . G A 42.0365 . AB=0.129032;ABP=40.0654;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=51;DPB=51;DPRA=3.1;EPP=11.6962;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=1893;RO=47;RPL=0;RPP=11.6962;RPPR=105.07;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:27,4:27:1089:4:163:-5.7265,0,-88.9644 0/0:11:11,0:11:443:0:0:0,-3.31133,-40.2253 0/0:9:9,0:9:361:0:0:0,-2.70927,-32.8539 dDocent_Contig_2689 44 . T A 104.189 . AB=0.181818;ABP=12.6832;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=3X;DP=28;DPB=28;DPRA=2.2;EPP=7.35324;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=32;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=849;RO=22;RPL=0;RPP=7.35324;RPPR=50.7827;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:11:9,2,0:9:337:2,0:80,0:-2.64735,0,-27.367,-5.35662,-27.9691,-33.0011 0|0:5:5,0,0:5:190:0,0:0,0:0,-1.50515,-17.4659,-1.50515,-17.4659,-17.4659 0|0:12:8,0,4:8:322:0,4:0,161:-11.2629,-13.6712,-40.2092,0,-26.9401,-25.736 dDocent_Contig_2690 168 . T G 2288.87 . AB=0.681159;ABP=22.6794;AC=4;AF=0.666667;AN=6;AO=77;CIGAR=1X;DP=99;DPB=99;DPRA=0;EPP=170.214;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2803;QR=768;RO=22;RPL=77;RPP=170.214;RPPR=50.7827;RPR=0;RUN=1;SAF=0;SAP=170.214;SAR=77;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:12,28:12:417:28:1033:-81.2302,0,-25.8093 1/1:30:0,30:0:0:30:1092:-98.5803,-9.0309,0 0/1:29:10,19:10:351:19:678:-52.5995,0,-23.1884 dDocent_Contig_2691 24 . A G 83.0933 . AB=0.178571;ABP=28.1373;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=139;DPB=139;DPRA=0.379747;EPP=16.0391;EPPR=291.816;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.984962;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=5202;RO=133;RPL=0;RPP=16.0391;RPPR=291.816;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=133;SRP=291.816;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:31,1:31:1221:1:40:0,-5.63728,-106.174 0/1:28:23,5:23:913:5:202:-10.1332,0,-74.0519 0/0:79:79,0:79:3068:0:0:0,-23.7814,-276.229 dDocent_Contig_2693 61 . T C 537.336 . AB=0.207407;ABP=103.397;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X;DP=135;DPB=135;DPRA=0;EPP=63.8115;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1098;QR=4253;RO=107;RPL=28;RPP=63.8115;RPPR=235.358;RPR=0;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:17,13:17:678:13:506:-36.8534,0,-52.32 0/1:36:31,5:31:1235:5:201:-7.63402,0,-100.584 0/1:69:59,10:59:2340:10:391:-14.7691,0,-189.983 dDocent_Contig_2695 108 . T A 1283.87 . AB=0.65;ABP=18.6449;AC=3;AF=0.5;AN=6;AO=52;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=115.927;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1745;QR=946;RO=28;RPL=0;RPP=115.927;RPPR=63.8115;RPR=52;RUN=1;SAF=0;SAP=115.927;SAR=52;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:11,16:11:363:16:552:-41.8792,0,-24.8616 0/1:12:3,9:3:105:9:284:-22.254,0,-6.1838 0/1:41:14,27:14:478:27:909:-69.777,0,-31.0043 dDocent_Contig_2696 98 . N C 144.836 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=152;QR=0;RO=0;RPL=5;RPP=13.8677;RPPR=0;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:136:-12.576,-1.20412,0 1/1:1:0,1:0:0:1:16:-1.59998,-0.30103,0 dDocent_Contig_2697 28 . G C 46.3982 . AB=0.1875;ABP=16.582;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=80;DPB=80;DPRA=0.5;EPP=9.52472;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=3036;RO=77;RPL=0;RPP=9.52472;RPPR=170.214;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:38,0:38:1492:0:0:0,-11.4391,-134.527 0/1:16:13,3:13:504:3:121:-6.46372,0,-40.8833 0/0:26:26,0:26:1040:0:0:0,-7.82678,-93.8929 dDocent_Contig_2698 14 . G A 34997.9 . AB=0.164607;ABP=1742.18;AC=3;AF=0.5;AN=6;AO=293;CIGAR=1X1M1X1M2X;DP=1780;DPB=1778.17;DPRA=0;EPP=639.252;EPPR=150.67;GTI=0;LEN=1;MEANALT=18;MQM=55.1706;MQMR=55.9706;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.397059;PAO=0;PQA=0;PQR=0;PRO=0;QA=11530;QR=2665;RO=68;RPL=0;RPP=639.252;RPPR=150.67;RPR=293;RUN=1;SAF=293;SAP=639.252;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:659:25,42,104,361:25:978:42,104,361:1654,4073,12687:-1279.69,-1151.37,-1213.47,-957.625,-896.524,-1001.06,-254.843,-193.741,0,-220.916 1|0:466:24,50,61,248:24:942:50,61,248:1976,2367,8909:-844.105,-688.924,-743.26,-657.216,-564.197,-708.24,-124.729,-31.7069,0,-119.457 1|0:655:19,79,128,349:19:745:79,128,349:3096,5090,12678:-1381.52,-1133.43,-1170.91,-973.948,-781.408,-996.682,-352.019,-159.481,0,-308.224 dDocent_Contig_2699 58 . C G 76.6127 . AB=0.139535;ABP=51.5402;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=103;DPB=103;DPRA=1.43333;EPP=16.0391;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.979381;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=3716;RO=97;RPL=6;RPP=16.0391;RPPR=213.643;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:34,0:34:1305:0:0:0,-10.235,-117.712 0/1:43:37,6:37:1388:6:245:-9.48518,0,-112.234 0/0:26:26,0:26:1023:0:0:0,-7.82678,-92.3662 dDocent_Contig_2700 14 . G A 1391.83 . AB=0.607595;ABP=10.954;AC=3;AF=0.5;AN=6;AO=48;CIGAR=1X;DP=79;DPB=79;DPRA=0;EPP=107.241;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1861;QR=1233;RO=31;RPL=0;RPP=107.241;RPPR=70.3259;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:7,10:7:274:10:376:-29.0666,0,-19.9078 0/1:29:9,20:9:359:20:776:-61.4362,0,-23.9423 0/1:33:15,18:15:600:18:709:-54.2032,0,-44.4022 dDocent_Contig_2701 11 . G T 303.635 . AB=0.276596;ABP=23.3852;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X3M2I1X;DP=123;DPB=128.2;DPRA=1.23684;EPP=31.2394;EPPR=241.872;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=511;QR=4294;RO=110;RPL=0;RPP=31.2394;RPPR=241.872;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=110;SRP=241.872;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:37:37,0:37:1439:0:0:0,-11.1381,-129.779 0|0:39:39,0:39:1535:0:0:0,-11.7402,-138.407 0|1:47:34,13:34:1320:13:511:-32.1874,0,-104.923 dDocent_Contig_2702 48 . G C 42.1454 . AB=0.131579;ABP=47.8112;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=74;DPB=74;DPRA=0.527778;EPP=13.8677;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=2746;RO=69;RPL=0;RPP=13.8677;RPPR=152.842;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:26,3:26:1029:3:123:-2.73492,0,-84.1747 0/0:36:36,0:36:1434:0:0:0,-10.8371,-129.316 0/1:9:7,2:7:283:2:81:-4.97646,0,-23.1337 dDocent_Contig_2703 32 . A G 282.422 . AB=0.168224;ABP=105.313;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X;DP=107;DPB=107;DPRA=0;EPP=42.0968;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=716;QR=3514;RO=89;RPL=0;RPP=42.0968;RPPR=196.271;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:38,8:38:1506:8:314:-14.7731,0,-121.943 0/1:32:29,3:29:1121:3:121:-1.64724,0,-91.5365 0/1:29:22,7:22:887:7:281:-16.9321,0,-71.4064 dDocent_Contig_2704 43 . C A 402.946 . AB=0.257143;ABP=38.8706;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=81;DPB=81;DPRA=3.18182;EPP=42.0968;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=691;QR=2423;RO=63;RPL=0;RPP=42.0968;RPPR=139.813;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:17,15:17:658:15:568:-41.8159,0,-49.9162 0/1:38:35,3:35:1318:3:123:-0.0256485,0,-107.45 0/0:11:11,0:11:447:0:0:0,-3.31133,-40.5861 dDocent_Contig_2705 8 . G A 1523.53 . AB=0.209596;ABP=293.088;AC=3;AF=0.5;AN=6;AO=83;CIGAR=1X;DP=396;DPB=396;DPRA=0;EPP=183.243;EPPR=671.824;GTI=0;LEN=1;MEANALT=1.66667;MQM=58.4096;MQMR=54.4903;NS=3;NUMALT=1;ODDS=0;PAIRED=0.987952;PAIREDR=0.857143;PAO=0;PQA=0;PQR=0;PRO=0;QA=3082;QR=11630;RO=308;RPL=0;RPP=183.243;RPPR=671.824;RPR=83;RUN=1;SAF=83;SAP=183.243;SAR=0;SRF=308;SRP=671.824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:112:81,31:81:3029:31:1156:-68.7089,0,-224.457 0/1:139:100,37:100:3787:37:1365:-81.4755,0,-279.502 0/1:145:127,15:127:4814:15:561:-7.69143,0,-368.186 dDocent_Contig_2706 189 . C T 1771.86 . AB=0.674419;ABP=25.735;AC=3;AF=0.5;AN=6;AO=58;CIGAR=1X;DP=86;DPB=86;DPRA=0;EPP=128.956;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2307;QR=1103;RO=28;RPL=58;RPP=128.956;RPPR=63.8115;RPR=0;RUN=1;SAF=0;SAP=128.956;SAR=58;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:8,37:8:318:37:1454:-117.565,0,-15.44 0/1:17:7,10:7:262:10:407:-31.8731,0,-18.8173 0/1:24:13,11:13:523:11:446:-33.2709,0,-40.1919 dDocent_Contig_2707 9 . T A 632.617 . AB=0.296703;ABP=35.6778;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1M3X1M1I1X2M1X1M1X1M1X1M1X1M1X;DP=91;DPB=92.8824;DPRA=0;EPP=61.6401;EPPR=118.098;GTI=0;LEN=1;MEANALT=3.33333;MQM=48.7037;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1044;QR=2075;RO=53;RPL=0;RPP=61.6401;RPPR=118.098;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:33:19,2,11,0:19:735:2,11,0:77,432,0:-29.2772,-29.1015,-88.8758,0,-54.5082,-57.0931,-34.9968,-89.4779,-60.4044,-95.3747 0|1:23:13,0,8,2:13:511:0,8,2:0,307,74:-21.037,-24.9504,-66.9917,0,-42.0528,-39.6445,-18.8988,-60.9396,-36.0022,-60.3376 0|1:35:21,2,8,2:21:829:2,8,2:80,305,79:-18.4703,-18.7365,-86.3612,0,-62.1794,-65.8258,-18.3335,-80.5075,-61.7783,-85.9605 dDocent_Contig_2708 167 . C G 2490.8 . AB=0.650794;ABP=27.8961;AC=3;AF=0.5;AN=6;AO=82;CIGAR=1X;DP=126;DPB=126;DPRA=0;EPP=172.491;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3241;QR=1748;RO=44;RPL=81;RPP=172.491;RPPR=98.5551;RPR=1;RUN=1;SAF=0;SAP=181.071;SAR=82;SRF=0;SRP=98.5551;SRR=44;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:28,21:28:1108:21:822:-59.5432,0,-85.2578 0/1:13:7,6:7:275:6:231:-17.2389,0,-21.2003 0/1:64:9,55:9:365:55:2188:-177.821,0,-13.9486 dDocent_Contig_2709 123 . C A 56.0954 . AB=0.208333;ABP=20.744;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=34;DPB=34;DPRA=1.2;EPP=13.8677;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=174;QR=974;RO=29;RPL=0;RPP=13.8677;RPPR=65.983;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:334:0:0:0,-3.0103,-30.3844 0/1:13:10,3:10:340:3:104:-5.7897,0,-27.0158 0/1:11:9,2:9:300:2:70:-3.33607,0,-24.0134 dDocent_Contig_2710 146 . G A 319.403 . AB=0.245614;ABP=35.049;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=142;DPB=142;DPRA=1.34118;EPP=33.4109;EPPR=278.787;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=562;QR=4996;RO=127;RPL=0;RPP=33.4109;RPPR=278.787;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=278.787;SRR=127;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:43:43,0:43:1657:0:0:0,-12.9443,-149.351 0/1:57:43,14:43:1712:14:562:-33.7642,0,-137.146 0/0:42:41,0:41:1627:0:0:0,-12.3422,-146.571 dDocent_Contig_2712 8 . G A 323.159 . AB=0.351351;ABP=10.1116;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=60;DPB=60;DPRA=0;EPP=33.4109;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=537;QR=1752;RO=46;RPL=0;RPP=33.4109;RPPR=102.898;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:14,12:14:539:12:459:-33.8332,0,-41.0282 0/0:23:22,1:22:826:1:39:0,-3.02713,-70.7638 0/1:11:10,1:10:387:1:39:-0.585235,0,-31.8762 dDocent_Contig_2713 16 . G A 5463.6 . AB=0.72314;ABP=107.672;AC=3;AF=0.5;AN=6;AO=175;CIGAR=1X3M;DP=242;DPB=242;DPRA=0;EPP=383.018;EPPR=124.613;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6908;QR=2172;RO=56;RPL=0;RPP=383.018;RPPR=124.613;RPR=175;RUN=1;SAF=175;SAP=383.018;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:65:21,3,41:21:793:3,41:118,1567:-122.216,-118.83,-182.909,0,-55.2605,-52.6271 0|1:50:20,0,30:20:781:0,30:0,1187:-92.0557,-98.0763,-162.278,0,-64.5936,-55.5627 0|1:127:15,8,104:15:598:8,104:315,4154:-337.611,-316.213,-363.051,0,-23.3373,-17.9427 dDocent_Contig_2714 117 . A C 91.5891 . AB=0.26087;ABP=14.4341;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=48;DPB=48;DPRA=0;EPP=18.2106;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=1420;RO=41;RPL=0;RPP=18.2106;RPPR=92.0407;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=92.0407;SRR=41;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:10,2:10:347:2:70:-3.03504,0,-27.9529 0/0:25:24,1:24:828:1:31:0,-4.4263,-71.7385 0/1:11:7,4:7:245:4:140:-9.6336,0,-19.0799 dDocent_Contig_2715 18 . T C 897.424 . AB=0.314815;ABP=35.1803;AC=2;AF=0.333333;AN=6;AO=36;CIGAR=1X3M;DP=147;DPB=147;DPRA=0;EPP=81.1833;EPPR=198.443;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1383;QR=3488;RO=90;RPL=0;RPP=81.1833;RPPR=198.443;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:42:30,0,12:30:1161:0,12:0,468:-29.8248,-38.8557,-134.213,0,-95.7456,-92.1332 0|0:39:35,2,2:35:1353:2,2:77,52:0,-4.15159,-114.791,-6.52148,-111.323,-117.043 0|1:66:25,19,22:25:974:19,22:750,863:-63.4405,-9.25509,-83.5826,0,-18.3334,-73.423 dDocent_Contig_2716 21 . C T 67.0274 . AB=0.12766;ABP=59.6072;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=2X8M;DP=61;DPB=60.7;DPRA=1.67857;EPP=16.0391;EPPR=113.755;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=1999;RO=51;RPL=0;RPP=16.0391;RPPR=113.755;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:24:16,3,4:16:621:3,4:121,158:-8.2188,-3.03605,-53.1956,0,-41.0926,-49.8673 0|1:23:21,0,2:21:823:0,2:0,80:-0.668101,-6.98973,-74.6603,0,-68.0694,-67.4674 0|0:14:14,0,0:14:555:0,0:0,0:0,-4.21442,-50.2951,-4.21442,-50.2951,-50.2951 dDocent_Contig_2717 31 . T C 2148.85 . AB=0.661972;ABP=19.1893;AC=4;AF=0.666667;AN=6;AO=67;CIGAR=1X;DP=91;DPB=91;DPRA=0;EPP=148.499;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2655;QR=867;RO=23;RPL=0;RPP=148.499;RPPR=52.9542;RPR=67;RUN=1;SAF=67;SAP=148.499;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:7,27:7:275:27:1059:-85.3689,0,-14.8839 0/1:37:16,20:16:592:20:802:-61.2622,0,-42.3737 1/1:20:0,20:0:0:20:794:-71.7764,-6.0206,0 dDocent_Contig_2718 107 . N A 97.8002 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=98;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:64:-6.07837,-0.60206,0 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_2719 1 . N G 342.33 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=17;CIGAR=1X;DP=17;DPB=17;DPRA=0;EPP=39.9253;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=21.7647;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=635;QR=0;RO=0;RPL=0;RPP=39.9253;RPPR=0;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:147:-8.08316,-1.20412,0 1/1:8:0,8:0:0:8:296:-15.8681,-2.40824,0 1/1:5:0,5:0:0:5:192:-9.80441,-1.50515,0 dDocent_Contig_2720 42 . A G 50.6644 . AB=0.122449;ABP=63.6786;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=137;DPB=137;DPRA=1.11364;EPP=16.0391;EPPR=287.473;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=233;QR=5022;RO=131;RPL=0;RPP=16.0391;RPPR=287.473;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=131;SRP=287.473;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:43,6:43:1676:6:233:-6.58932,0,-136.333 0/0:44:44,0:44:1690:0:0:0,-13.2453,-152.343 0/0:44:44,0:44:1656:0:0:0,-13.2453,-149.287 dDocent_Contig_2721 95 . T G 646.399 . AB=0.446154;ABP=4.64726;AC=3;AF=0.5;AN=6;AO=29;CIGAR=1X;DP=65;DPB=65;DPRA=0;EPP=65.983;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.972222;PAO=0;PQA=0;PQR=0;PRO=0;QA=986;QR=1242;RO=36;RPL=29;RPP=65.983;RPPR=81.1833;RPR=0;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:19,7:19:655:7:239:-14.0168,0,-51.4468 0/1:21:11,10:11:379:10:347:-25.2437,0,-28.1206 0/1:18:6,12:6:208:12:400:-30.9023,0,-13.6411 dDocent_Contig_2722 107 . N T 132.98 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=137;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:105:-9.79616,-0.90309,0 1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_2724 19 . A G 208.128 . AB=0.207547;ABP=42.3836;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=110;DPB=110;DPRA=1.85965;EPP=26.8965;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=425;QR=3897;RO=99;RPL=0;RPP=26.8965;RPPR=217.986;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1063:0:0:0,-8.12781,-95.9659 0/0:30:30,0:30:1171:0:0:0,-9.0309,-105.671 0/1:53:42,11:42:1663:11:425:-22.6367,0,-133.952 dDocent_Contig_2726 7 . A T 45.1573 . AB=0.153846;ABP=30.0702;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=48;DPB=48;DPRA=2.36364;EPP=11.6962;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=150;QR=1670;RO=44;RPL=0;RPP=11.6962;RPPR=98.5551;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:22,4:22:839:4:150:-6.03859,0,-68.0058 0/0:8:8,0:8:301:0:0:0,-2.40824,-27.4472 0/0:14:14,0:14:530:0:0:0,-4.21442,-48.0403 dDocent_Contig_2727 97 . G A 50483.8 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=2867;CIGAR=1X;DP=2925;DPB=2925;DPRA=0;EPP=6228.62;EPPR=120.27;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=56401;QR=315;RO=54;RPL=2867;RPP=6228.62;RPPR=120.27;RPR=0;RUN=1;SAF=2867;SAP=6228.62;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:984:19,964:19:108:964:18588:-1663.25,-286.205,0 1/1:1373:28,1343:28:172:1343:25992:-2323.81,-397.254,0 1/1:568:7,560:7:35:560:11821:-1060.84,-167.552,0 dDocent_Contig_2728 34 . A G 244.038 . AB=0.0595238;ABP=144.57;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1M1X7M1X8M;DP=139;DPB=136.778;DPRA=0;EPP=13.8677;EPPR=233.186;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=4076;RO=106;RPL=0;RPP=13.8677;RPPR=233.186;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:37:28,1,0,6,2:28:1070:1,0,6,2:40,0,238,80:-11.1598,-16.2933,-103.772,-19.5886,-104.073,-107.369,0,-84.4804,-87.776,-85.9698,-12.9978,-97.4824,-100.778,-81.1847,-100.176 0|1:47:38,4,0,0,2:38:1454:4,0,0,2:158,0,0,78:-1.59147,0,-118.159,-13.0306,-119.363,-132.366,-13.0306,-119.363,-132.366,-132.366,-6.61013,-112.951,-125.954,-125.954,-125.352 0|0:55:40,0,4,2,9:40:1552:0,4,2,9:0,158,81,350:-16.7138,-28.755,-156.266,-15.7561,-143.268,-142.064,-22.0739,-149.587,-136.588,-148.985,0,-127.506,-114.507,-120.826,-124.797 dDocent_Contig_2729 22 . G C 91.4784 . AB=0.2;ABP=22.5536;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=73;DPB=73;DPRA=1.04167;EPP=13.8677;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=2693;RO=68;RPL=0;RPP=13.8677;RPPR=150.67;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:20,5:20:797:5:198:-10.6707,0,-64.5206 0/0:27:27,0:27:1061:0:0:0,-8.12781,-95.778 0/0:21:21,0:21:835:0:0:0,-6.32163,-75.4582 dDocent_Contig_2732 23 . C A 45.7791 . AB=0.121951;ABP=53.9075;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=84;DPB=84;DPRA=1.90698;EPP=13.8677;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=3156;RO=79;RPL=0;RPP=13.8677;RPPR=174.557;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1082:0:0:0,-8.12781,-97.6654 0/0:16:16,0:16:619:0:0:0,-4.81648,-56.0371 0/1:41:36,5:36:1455:5:204:-6.4018,0,-118.853 dDocent_Contig_2733 18 . C G 218.14 . AB=0.207547;ABP=42.3836;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=187;DPB=187;DPRA=0.984127;EPP=29.068;EPPR=383.018;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=474;QR=6880;RO=175;RPL=0;RPP=29.068;RPPR=383.018;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=175;SRP=383.018;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:71:70,1:70:2770:1:38:0,-17.5759,-245.631 0/1:53:42,11:42:1627:11:436:-23.6379,0,-130.715 0/0:63:63,0:63:2483:0:0:0,-18.9649,-223.622 dDocent_Contig_2735 46 . T C 1505.8 . AB=0.473684;ABP=3.69603;AC=3;AF=0.5;AN=6;AO=54;CIGAR=1X;DP=114;DPB=114;DPRA=0;EPP=67.3502;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2105;QR=2340;RO=60;RPL=47;RPP=67.3502;RPPR=133.299;RPR=7;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:12,43:12:461:43:1679:-134.79,0,-25.278 0/1:23:18,5:18:691:5:187:-10.2656,0,-55.5963 0/1:36:30,6:30:1188:6:239:-11.0477,0,-96.3645 dDocent_Contig_2736 9 . C T 2723.27 . AB=0.279343;ABP=183.171;AC=3;AF=0.5;AN=6;AO=119;CIGAR=2X;DP=426;DPB=426;DPRA=0;EPP=174.703;EPPR=465.753;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=59.3456;NS=3;NUMALT=1;ODDS=0;PAIRED=0.806723;PAIREDR=0.771812;PAO=0;PQA=0;PQR=0;PRO=0;QA=4486;QR=11431;RO=298;RPL=0;RPP=261.416;RPPR=650.109;RPR=119;RUN=1;SAF=108;SAP=174.703;SAR=11;SRF=275;SRP=465.753;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:180:126,50:126:4782:50:1838:-112.308,0,-376.565 0|1:127:88,38:88:3382:38:1459:-93.2556,0,-265.842 0|1:119:84,31:84:3267:31:1189:-72.2866,0,-259.13 dDocent_Contig_2738 55 . G T 82.6218 . AB=0.166667;ABP=49.335;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=2X;DP=170;DPB=170;DPRA=0.786885;EPP=20.3821;EPPR=354.789;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=269;QR=5824;RO=162;RPL=8;RPP=20.3821;RPPR=354.789;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=162;SRP=354.789;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:60:60,0:60:2169:0:0:0,-18.0618,-195.47 0|0:62:62,0:62:2235:0:0:0,-18.6639,-201.406 0|1:48:40,8:40:1420:8:269:-10.0861,0,-113.649 dDocent_Contig_2739 43 . T A 414.866 . AB=0.447368;ABP=3.9246;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=53;DPB=53;DPRA=0;EPP=42.0968;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.222222;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=660;QR=1371;RO=35;RPL=0;RPP=42.0968;RPPR=79.0118;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:13,5:13:522:5:157:-9.01395,0,-41.9078 0/1:20:8,12:8:292:12:463:-35.9951,0,-20.5932 0/0:15:14,1:14:557:1:40:0,-0.519771,-46.477 dDocent_Contig_2741 11 . T C 320.333 . AB=0.207317;ABP=64.0234;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=82;DPB=82;DPRA=0;EPP=39.9253;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=679;QR=2514;RO=65;RPL=0;RPP=39.9253;RPPR=144.156;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:14,3:14:543:3:121:-6.16269,0,-44.0972 0/1:31:27,4:27:1062:4:160:-5.45187,0,-86.5424 0/1:34:24,10:24:909:10:398:-25.9415,0,-71.8667 dDocent_Contig_2742 34 . T C 797.93 . AB=0.367089;ABP=15.1321;AC=1;AF=0.166667;AN=6;AO=33;CIGAR=1X;DP=160;DPB=160;DPRA=2.25862;EPP=74.6689;EPPR=278.787;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1318;QR=4878;RO=127;RPL=0;RPP=74.6689;RPPR=278.787;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=127;SRP=278.787;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:52:48,4:48:1837:4:150:0,-1.78827,-151.71 0/0:29:29,0:29:1111:0:0:0,-8.72987,-100.285 0/1:79:50,29:50:1930:29:1168:-81.6169,0,-150.145 dDocent_Contig_2743 189 . A G 9186.45 . AB=0.316038;ABP=65.3275;AC=4;AF=0.666667;AN=6;AO=304;CIGAR=1X;DP=467;DPB=467;DPRA=0;EPP=645.88;EPPR=356.96;GTI=0;LEN=1;MEANALT=1;MQM=59.8026;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.953947;PAIREDR=0.993865;PAO=0;PQA=0;PQR=0;PRO=0;QA=11659;QR=6170;RO=163;RPL=304;RPP=663.138;RPPR=356.96;RPR=0;RUN=1;SAF=2;SAP=645.88;SAR=302;SRF=0;SRP=356.96;SRR=163;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:160:140,20:140:5275:20:782:-22.4009,0,-426.515 1/1:255:18,237:18:699:237:9078:-753.242,-13.5275,0 0/1:52:5,47:5:196:47:1799:-146.465,0,-2.35928 dDocent_Contig_2744 27 . G A 264.419 . AB=0.12766;ABP=229.398;AC=2;AF=0.333333;AN=6;AO=26;CIGAR=1X;DP=282;DPB=282;DPRA=0;EPP=59.4686;EPPR=558.907;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1036;QR=10071;RO=256;RPL=0;RPP=59.4686;RPPR=558.907;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=256;SRP=558.907;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:84:71,13:71:2817:13:512:-21.1366,0,-228.36 0/1:104:93,11:93:3642:11:442:-8.82818,0,-296.519 0/0:94:92,2:92:3612:2:82:0,-20.5171,-317.343 dDocent_Contig_2745 11 . G T 495.584 . AB=0.102007;ABP=1648.51;AC=2;AF=0.333333;AN=6;AO=186;CIGAR=1X;DP=2089;DPB=2089;DPRA=0;EPP=372.908;EPPR=3629.29;GTI=0;LEN=1;MEANALT=2.33333;MQM=48.7634;MQMR=51.7264;NS=3;NUMALT=1;ODDS=0;PAIRED=0.827957;PAIREDR=0.612278;PAO=0;PQA=0;PQR=0;PRO=0;QA=7242;QR=71990;RO=1857;RPL=0;RPP=406.904;RPPR=4035.43;RPR=186;RUN=1;SAF=182;SAP=372.908;SAR=4;SRF=1809;SRP=3629.29;SRR=48;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:679:584,68:584:22602:68:2660:-32.3813,0,-1779.19 0/1:517:452,54:452:17492:54:2056:-20.6999,0,-1363.24 0/0:893:821,64:821:31896:64:2526:0,-57.4678,-2518.88 dDocent_Contig_2746 17 . A G 41.2972 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=22;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:68:-4.1286,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_2747 9 . T C 135.81 . AB=0.269231;ABP=15.0369;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=32;DPB=32;DPRA=2.16667;EPP=18.2106;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=56.5714;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=269;QR=947;RO=25;RPL=0;RPP=18.2106;RPPR=57.2971;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:230:0:0:0,-1.80618,-21.0668 0/1:12:10,2:10:375:2:78:-3.79111,0,-30.4888 0/1:14:9,5:9:342:5:191:-13.3104,0,-26.9219 dDocent_Contig_2748 29 . G A 315.697 . AB=0.186813;ABP=80.539;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=117;DPB=117;DPRA=1.75;EPP=39.9253;EPPR=220.158;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=681;QR=3911;RO=100;RPL=0;RPP=39.9253;RPPR=220.158;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:60:46,14:46:1767:14:564:-33.041,0,-141.191 0/1:31:28,3:28:1095:3:117:-1.5779,0,-89.5065 0/0:26:26,0:26:1049:0:0:0,-7.82678,-94.7004 dDocent_Contig_2749 47 . C T 678.354 . AB=0.209677;ABP=139.183;AC=3;AF=0.5;AN=6;AO=39;CIGAR=1X;DP=186;DPB=186;DPRA=0;EPP=87.6977;EPPR=322.217;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1426;QR=5835;RO=147;RPL=0;RPP=87.6977;RPPR=322.217;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=147;SRP=322.217;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:25,15:25:988:15:556:-38.3352,0,-77.1713 0/1:96:84,12:84:3310:12:433:-10.4065,0,-269.081 0/1:50:38,12:38:1537:12:437:-24.6165,0,-123.515 dDocent_Contig_2750 8 . G C 45.5571 . AB=0.117647;ABP=67.7713;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=96;DPB=96;DPRA=2.26667;EPP=16.0391;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=3328;RO=90;RPL=0;RPP=16.0391;RPPR=198.443;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:45,6:45:1657:6:234:-6.07857,0,-134.046 0/0:28:28,0:28:1032:0:0:0,-8.42884,-93.1857 0/0:17:17,0:17:639:0:0:0,-5.11751,-57.8379 dDocent_Contig_2751 107 . N C 57.95 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=61;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:61:-5.79392,-0.60206,0 dDocent_Contig_2752 72 . C T 32.4875 . AB=0.1875;ABP=16.582;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=36;DPB=36;DPRA=1.6;EPP=9.52472;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=106;QR=1051;RO=33;RPL=3;RPP=9.52472;RPPR=74.6689;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:295:0:0:0,-3.0103,-26.839 0/1:16:13,3:13:426:3:106:-5.07241,0,-33.8389 0/0:10:10,0:10:330:0:0:0,-3.0103,-30.0206 dDocent_Contig_2753 29 . A C 439.775 . AB=0.285714;ABP=28.1373;AC=1;AF=0.166667;AN=6;AO=18;CIGAR=1X;DP=156;DPB=156;DPRA=1.35484;EPP=42.0968;EPPR=302.673;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=716;QR=5482;RO=138;RPL=0;RPP=42.0968;RPPR=302.673;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=138;SRP=302.673;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:44:44,0:44:1748:0:0:0,-13.2453,-157.542 0/0:49:49,0:49:1935:0:0:0,-14.7505,-174.36 0/1:63:45,18:45:1799:18:716:-45.8014,0,-143.161 dDocent_Contig_2754 200 . G C 53.6377 . AB=0.112676;ABP=95.5273;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=138;DPB=138;DPRA=2.1194;EPP=20.3821;EPPR=285.302;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=310;QR=4965;RO=130;RPL=8;RPP=20.3821;RPPR=285.302;RPR=0;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=285.302;SRR=130;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:63,8:63:2394:8:310:-6.88664,0,-194.294 0/0:34:34,0:34:1285:0:0:0,-10.235,-115.936 0/0:33:33,0:33:1286:0:0:0,-9.93399,-116.026 dDocent_Contig_2755 43 . T C 672.809 . AB=0.231293;ABP=95.2019;AC=3;AF=0.5;AN=6;AO=34;CIGAR=1X;DP=147;DPB=147;DPRA=0;EPP=76.8404;EPPR=248.387;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1289;QR=4248;RO=113;RPL=0;RPP=76.8404;RPPR=248.387;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=113;SRP=248.387;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:37,7:37:1408:7:261:-10.6011,0,-113.723 0/1:56:42,14:42:1557:14:527:-30.9128,0,-123.54 0/1:47:34,13:34:1283:13:501:-31.2898,0,-101.609 dDocent_Contig_2756 18 . C T 462.188 . AB=0.369565;ABP=9.80795;AC=1;AF=0.166667;AN=6;AO=18;CIGAR=1X;DP=115;DPB=115;DPRA=1.8;EPP=42.0968;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=724;QR=3851;RO=97;RPL=0;RPP=42.0968;RPPR=213.643;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:44:43,1:43:1679:1:40:0,-9.24964,-147.348 0/0:25:25,0:25:999:0:0:0,-7.52575,-90.2101 0/1:46:29,17:29:1173:17:684:-48.0427,0,-91.9993 dDocent_Contig_2758 15 . A C 223.547 . AB=0.234043;ABP=31.8863;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=75;DPB=75;DPRA=0;EPP=31.2394;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=514;QR=2452;RO=62;RPL=0;RPP=31.2394;RPPR=137.642;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:25,3:25:992:3:118:-2.57336,0,-81.1481 0/1:19:11,8:11:445:8:318:-23.2671,0,-34.6861 0/0:28:26,2:26:1015:2:78:0,-1.02554,-84.2434 dDocent_Contig_2759 19 . C T 1197.6 . AB=0.286624;ABP=65.0978;AC=3;AF=0.5;AN=6;AO=45;CIGAR=1X2M2X;DP=157;DPB=157;DPRA=0;EPP=100.727;EPPR=146.327;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=0.939394;PAO=0;PQA=0;PQR=0;PRO=0;QA=1764;QR=2605;RO=66;RPL=0;RPP=100.727;RPPR=146.327;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:52:28,0,19,0,4:28:1101:0,19,0,4:0,731,0,157:-51.5738,-60.0026,-150.571,0,-90.5675,-84.8479,-60.0026,-150.571,-90.5675,-150.571,-47.089,-137.659,-77.6551,-137.659,-136.455 0|1:49:23,4,8,5,8:23:899:4,8,5,8:159,313,200,312:-18.8107,-12.6436,-85.3449,0,-60.8135,-71.496,-9.25823,-70.0732,-57.4285,-81.6589,-0.0912256,-60.9045,-48.2599,-57.5194,-71.5869 0|1:56:15,10,18,12,0:15:605:10,18,12,0:403,720,474,0:-54.7947,-26.0923,-72.9546,0,-16.6551,-44.4541,-20.3108,-36.9654,-10.8741,-66.5701,-59.3102,-75.9649,-49.8727,-70.1824,-109.182 dDocent_Contig_2760 149 . C T 87.1978 . AB=0.155556;ABP=49.3833;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=20.3821;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=316;QR=1909;RO=50;RPL=0;RPP=20.3821;RPPR=111.584;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=111.584;SRR=50;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:23,4:23:863:4:158:-6.47216,0,-69.8339 0/1:18:15,3:15:564:3:120:-5.76936,0,-45.6749 0/0:13:12,1:12:482:1:38:0,-0.116121,-39.9341 dDocent_Contig_2761 28 . T A 1239.04 . AB=0.243243;ABP=130.129;AC=3;AF=0.5;AN=6;AO=54;CIGAR=1X3M2X;DP=222;DPB=222;DPRA=0;EPP=120.27;EPPR=330.903;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2126;QR=5885;RO=151;RPL=0;RPP=120.27;RPPR=330.903;RPR=54;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=151;SRP=330.903;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:80:59,11,0,10:59:2298:11,0,10:440,0,395:-18.4871,0,-185.548,-36.2479,-188.859,-225.106,-3.74882,-156.357,-192.604,-189.594 0|1:74:55,17,2,0:55:2137:17,2,0:674,80,0:-38.9196,0,-170.462,-48.8857,-168.989,-223.868,-55.4762,-175.58,-224.471,-231.061 0|1:68:37,26,5,0:37:1450:26,5,0:1012,199,0:-72.0198,0,-111.403,-66.7707,-102.843,-184.502,-83.1579,-119.229,-186.007,-202.393 dDocent_Contig_2763 25 . T C 51.0824 . AB=0.333333;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=36;DPB=36;DPRA=0.884615;EPP=5.18177;EPPR=64.083;GTI=0;LEN=1;MEANALT=1;MQM=41.75;MQMR=58.625;NS=3;NUMALT=1;ODDS=0;PAIRED=0.25;PAIREDR=0.96875;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=1170;RO=32;RPL=0;RPP=11.6962;RPPR=72.4974;RPR=4;RUN=1;SAF=3;SAP=5.18177;SAR=1;SRF=31;SRP=64.083;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:6,3:6:210:3:118:-6.63077,0,-16.53 0/0:13:13,0:13:461:0:0:0,-3.91339,-41.8167 0/0:14:13,1:13:499:1:36:0,-0.616145,-40.0191 dDocent_Contig_2765 34 . C A 82.3509 . AB=0.134615;ABP=63.3104;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=122;DPB=122;DPRA=1.48571;EPP=18.2106;EPPR=250.558;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=277;QR=4477;RO=114;RPL=0;RPP=18.2106;RPPR=250.558;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:44,7:44:1708:7:277:-9.75797,0,-138.433 0/0:25:25,0:25:987:0:0:0,-7.52575,-89.1301 0/0:45:45,0:45:1782:0:0:0,-13.5463,-160.597 dDocent_Contig_2766 16 . T A 3019.43 . AB=0.409594;ABP=22.2491;AC=3;AF=0.5;AN=6;AO=111;CIGAR=1X;DP=271;DPB=271;DPRA=0;EPP=244.044;EPPR=350.446;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.963964;PAIREDR=0.98125;PAO=0;PQA=0;PQR=0;PRO=0;QA=4314;QR=6008;RO=160;RPL=0;RPP=244.044;RPPR=350.446;RPR=111;RUN=1;SAF=111;SAP=244.044;SAR=0;SRF=160;SRP=350.446;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:114:73,41:73:2707:41:1594:-109.387,0,-209.503 0/1:68:25,43:25:937:43:1679:-130.885,0,-64.175 0/1:89:62,27:62:2364:27:1041:-67.1933,0,-186.178 dDocent_Contig_2768 36 . G A 56.8606 . AB=0.116667;ABP=79.5909;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=151;DPB=151;DPRA=1.29762;EPP=22.5536;EPPR=311.359;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=359;QR=5490;RO=142;RPL=0;RPP=22.5536;RPPR=311.359;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=142;SRP=311.359;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:49:47,2:47:1774:2:79:0,-7.25323,-152.399 0/1:60:53,7:53:2072:7:280:-7.50997,0,-168.629 0/0:42:42,0:42:1644:0:0:0,-12.6433,-148.192 dDocent_Contig_2769 161 . A T 111.488 . AB=0.206897;ABP=24.6501;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=77;DPB=77;DPRA=1.20833;EPP=16.0391;EPPR=132.228;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=237;QR=2751;RO=71;RPL=6;RPP=16.0391;RPPR=132.228;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=157.185;SRR=71;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:32,0:32:1208:0:0:0,-9.63296,-108.99 0/1:29:23,6:23:913:6:237:-12.9728,0,-73.7456 0/0:16:16,0:16:630:0:0:0,-4.81648,-57.0342 dDocent_Contig_2770 39 . T G 2622.61 . AB=0.0815047;ABP=488.283;AC=0;AF=0;AN=6;AO=26;CIGAR=1X1M1X1M1X;DP=319;DPB=319;DPRA=0;EPP=59.4686;EPPR=417.762;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=997;QR=7475;RO=191;RPL=0;RPP=59.4686;RPPR=417.762;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=191;SRP=417.762;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:92:66,11,15:66:2575:11,15:423,593:-28.9336,-14.0805,-222.429,0,-176.944,-207.154 0|0:96:64,7,25:64:2496:7,25:272,971:-60.5082,-57.423,-260.47,0,-182.804,-197.629 0|0:131:61,8,61:61:2404:8,61:302,2392:-178.342,-171.955,-367.332,0,-173.048,-179.434 dDocent_Contig_2771 76 . A T 2232.75 . AB=0.597222;ABP=14.8328;AC=3;AF=0.5;AN=6;AO=86;CIGAR=1X3M;DP=144;DPB=144;DPRA=0;EPP=189.757;EPPR=118.098;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3004;QR=1819;RO=53;RPL=86;RPP=189.757;RPPR=118.098;RPR=0;RUN=1;SAF=86;SAP=189.757;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:60:36,0,22:36:1234:0,22:0,779:-52.6596,-63.4967,-163.672,0,-100.211,-93.5882 0|1:42:6,0,36:6:207:0,36:0,1257:-100.788,-102.595,-119.411,0,-17.1621,-6.32498 0|1:42:11,3,28:11:378:3,28:103,968:-75.3501,-70.298,-100.091,0,-22.3331,-22.2678 dDocent_Contig_2772 13 . C A 3430.73 . AB=0.824818;ABP=128.559;AC=3;AF=0.5;AN=6;AO=113;CIGAR=1X;DP=137;DPB=137;DPRA=0;EPP=248.387;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4307;QR=911;RO=23;RPL=0;RPP=248.387;RPPR=52.9542;RPR=113;RUN=1;SAF=113;SAP=248.387;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:4,42:4:160:42:1580:-128.497,0,-0.776136 0/1:42:10,32:10:389:32:1212:-96.7158,0,-22.7237 0/1:48:9,39:9:362:39:1515:-122.151,0,-18.4947 dDocent_Contig_2774 77 . G T 27209.7 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=1145;CIGAR=1X;DP=1155;DPB=1155;DPRA=0;EPP=2489.35;EPPR=22.5536;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.882096;PAIREDR=0.777778;PAO=0;PQA=0;PQR=0;PRO=0;QA=30300;QR=72;RO=9;RPL=606;RPP=11.5236;RPPR=14.8328;RPR=539;RUN=1;SAF=606;SAP=11.5236;SAR=539;SRF=1;SRP=14.8328;SRR=8;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:444:1,443:1:5:443:11861:-1066.98,-133.157,0 1/1:594:8,585:8:67:585:14940:-1338.4,-172.469,0 1/1:117:0,117:0:0:117:3499:-315.117,-35.2205,0 dDocent_Contig_2775 16 . T C 552.791 . AB=0.333333;ABP=18.9344;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1X;DP=66;DPB=66;DPRA=0;EPP=50.7827;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=884;QR=1766;RO=44;RPL=0;RPP=50.7827;RPPR=98.5551;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:27,6:27:1084:6:238:-11.8602,0,-87.9105 0/1:24:14,10:14:560:10:405:-29.5853,0,-43.5176 0/1:9:3,6:3:122:6:241:-19.3565,0,-8.66322 dDocent_Contig_2776 27 . A G 762.453 . AB=0.340909;ABP=22.3561;AC=3;AF=0.5;AN=6;AO=30;CIGAR=1X;DP=88;DPB=88;DPRA=0;EPP=68.1545;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1191;QR=2319;RO=58;RPL=0;RPP=68.1545;RPPR=128.956;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:12,12:12:468:12:484:-36.6869,0,-35.2418 0/1:24:17,7:17:685:7:275:-17.8935,0,-54.7555 0/1:40:29,11:29:1166:11:432:-27.1878,0,-93.1781 dDocent_Contig_2777 32 . T C 4163.8 . AB=0.825301;ABP=155.589;AC=3;AF=0.5;AN=6;AO=137;CIGAR=1X;DP=166;DPB=166;DPRA=0;EPP=300.502;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5235;QR=1081;RO=29;RPL=0;RPP=300.502;RPPR=65.983;RPR=137;RUN=1;SAF=137;SAP=300.502;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:10,39:10:369:39:1499:-120.422,0,-18.8007 0/1:35:7,28:7:250:28:1080:-86.9637,0,-12.3086 0/1:82:12,70:12:462:70:2656:-214.518,0,-17.2444 dDocent_Contig_2778 45 . A G 164.456 . AB=0.222222;ABP=27.1378;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=79;DPB=79;DPRA=1.67442;EPP=20.3821;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=316;QR=2768;RO=71;RPL=0;RPP=20.3821;RPPR=157.185;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:28,8:28:1083:8:316:-17.9685,0,-86.9281 0/0:17:17,0:17:649:0:0:0,-5.11751,-58.741 0/0:26:26,0:26:1036:0:0:0,-7.82678,-93.5354 dDocent_Contig_2779 45 . C T 167.884 . AB=0.236842;ABP=25.8679;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=38;DPB=38;DPRA=0;EPP=22.5536;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=362;QR=1121;RO=29;RPL=0;RPP=22.5536;RPPR=65.983;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:14,4:14:555:4:158:-9.18122,0,-44.8677 0/1:9:7,2:7:281:2:81:-4.97646,0,-22.9529 0/1:11:8,3:8:285:3:123:-8.15346,0,-22.6662 dDocent_Contig_2780 54 . G C 64.1159 . AB=0.142857;ABP=41.7866;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=123;DPB=123;DPRA=1.16216;EPP=20.3821;EPPR=252.73;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=322;QR=4584;RO=115;RPL=8;RPP=20.3821;RPPR=252.73;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=115;SRP=252.73;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:30,5:30:1186:5:201:-7.93447,0,-96.483 0/0:51:48,3:48:1911:3:121:0,-4.07233,-160.92 0/0:37:37,0:37:1487:0:0:0,-11.1381,-134.077 dDocent_Contig_2781 118 . C T 228.198 . AB=0.259259;ABP=30.1939;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=188;DPB=188;DPRA=0.80597;EPP=33.4109;EPPR=380.846;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=451;QR=5670;RO=174;RPL=0;RPP=33.4109;RPPR=380.846;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=380.846;SRR=174;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:74:74,0:74:2376:0:0:0,-22.2762,-214.095 0/1:54:40,14:40:1309:14:451:-24.6437,0,-101.844 0/0:60:60,0:60:1985:0:0:0,-18.0618,-178.922 dDocent_Contig_2782 20 . T C 255.296 . AB=0.230769;ABP=35.7494;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=93;DPB=93;DPRA=1.4375;EPP=31.2394;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=514;QR=3087;RO=80;RPL=0;RPP=31.2394;RPPR=176.728;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:16,1:16:628:1:40:0,-1.12183,-52.8626 0/0:24:24,0:24:932:0:0:0,-7.22472,-84.1942 0/1:52:40,12:40:1527:12:474:-27.3534,0,-122.033 dDocent_Contig_2783 87 . T A 2040.62 . AB=0.654762;ABP=20.4855;AC=4;AF=0.666667;AN=6;AO=75;CIGAR=1X;DP=104;DPB=104;DPRA=0;EPP=165.871;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2577;QR=1023;RO=29;RPL=75;RPP=165.871;RPPR=65.983;RPR=0;RUN=1;SAF=75;SAP=165.871;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:21,32:21:743:32:1096:-82.99,0,-51.2402 0/1:31:8,23:8:280:23:813:-64.1602,0,-16.2076 1/1:20:0,20:0:0:20:668:-60.4346,-6.0206,0 dDocent_Contig_2784 8 . G A 62.7004 . AB=0.0990991;ABP=312.924;AC=2;AF=0.333333;AN=6;AO=29;CIGAR=1X;DP=381;DPB=381;DPRA=0;EPP=65.983;EPPR=767.369;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1102;QR=13358;RO=352;RPL=0;RPP=65.983;RPPR=767.369;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=352;SRP=767.369;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:159:152,7:152:5717:7:263:0,-23.8351,-490.497 0/1:65:59,6:59:2229:6:228:-1.31651,0,-181.271 0/1:157:141,16:141:5412:16:611:-8.06494,0,-439.81 dDocent_Contig_2785 9 . G A 452.673 . AB=0.235294;ABP=65.0889;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=102;DPB=102;DPRA=0;EPP=55.1256;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=894;QR=2874;RO=78;RPL=0;RPP=55.1256;RPPR=172.385;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:21,6:21:761:6:200:-10.1928,0,-60.6782 0/1:28:23,5:23:861:5:189:-8.94655,0,-69.38 0/1:47:34,13:34:1252:13:505:-31.6508,0,-98.8176 dDocent_Contig_2786 114 . C T 114.132 . AB=0.352941;ABP=6.20364;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=45;DPB=45;DPRA=1.21429;EPP=16.0391;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=1261;RO=39;RPL=0;RPP=16.0391;RPPR=87.6977;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=87.6977;SRR=39;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:11,6:11:342:6:197:-12.9361,0,-25.9651 0/0:20:20,0:20:653:0:0:0,-6.0206,-59.0795 0/0:8:8,0:8:266:0:0:0,-2.40824,-24.2653 dDocent_Contig_2788 8 . G T 121.395 . AB=0.142857;ABP=80.5629;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=151;DPB=151;DPRA=1.7284;EPP=24.725;EPPR=309.188;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=382;QR=5319;RO=141;RPL=0;RPP=24.725;RPPR=309.188;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=141;SRP=309.188;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:70:60,10:60:2234:10:382:-13.6624,0,-180.224 0/0:34:34,0:34:1270:0:0:0,-10.235,-114.593 0/0:47:47,0:47:1815:0:0:0,-14.1484,-163.601 dDocent_Contig_2789 52 . G T 832.603 . AB=0.366667;ABP=16.9077;AC=3;AF=0.5;AN=6;AO=33;CIGAR=1X;DP=90;DPB=90;DPRA=0;EPP=74.6689;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1276;QR=2264;RO=57;RPL=33;RPP=74.6689;RPPR=126.784;RPR=0;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:17,15:17:667:15:588:-43.6254,0,-50.7278 0/1:30:21,9:21:839:9:348:-22.6389,0,-66.7948 0/1:28:19,9:19:758:9:340:-22.5189,0,-60.114 dDocent_Contig_2790 63 . T C 66.9584 . AB=0.133333;ABP=55.5599;AC=1;AF=0.166667;AN=6;AO=23;CIGAR=1X;DP=377;DPB=377;DPRA=3.0566;EPP=52.9542;EPPR=771.712;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.957627;PAO=0;PQA=0;PQR=0;PRO=0;QA=875;QR=13578;RO=354;RPL=23;RPP=52.9542;RPPR=771.712;RPR=0;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=354;SRP=771.712;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:53:53,0:53:2017:0:0:0,-15.9546,-181.745 0/0:279:262,17:262:10045:17:634:0,-26.599,-846.175 0/1:45:39,6:39:1516:6:241:-8.51974,0,-123.142 dDocent_Contig_2791 130 . C A 968.493 . AB=0.603448;ABP=8.40154;AC=3;AF=0.5;AN=6;AO=35;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=79.0118;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1320;QR=841;RO=23;RPL=0;RPP=79.0118;RPPR=52.9542;RPR=35;RUN=1;SAF=0;SAP=79.0118;SAR=35;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:8,9:8:307:9:346:-26.3788,0,-22.874 0/1:22:7,15:7:240:15:575:-45.4677,0,-15.3026 0/1:19:8,11:8:294:11:399:-30.5257,0,-21.0888 dDocent_Contig_2792 10 . C A 44686.3 . AB=0.107053;ABP=1067.9;AC=2;AF=0.333333;AN=6;AO=128;CIGAR=1X2M1X;DP=1417;DPB=1417;DPRA=0;EPP=280.959;EPPR=63.8115;GTI=0;LEN=1;MEANALT=3.33333;MQM=59.8906;MQMR=59.2857;NS=3;NUMALT=2;ODDS=0;PAIRED=0.953125;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4995;QR=1089;RO=28;RPL=0;RPP=280.959;RPPR=63.8115;RPR=128;RUN=1;SAF=128;SAP=280.959;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:482:15,48,416:15:585:48,416:1874,16572:-1460.41,-1310.92,-1344.53,-105.948,0,-28.788 0|0:623:7,43,571:7:273:43,571:1658,22780:-2022.31,-1888.28,-1897.77,-149.452,-35.7342,0 1|0:312:6,37,269:6:231:37,269:1463,10799:-989.431,-870.841,-878.66,-101.45,0,-39.4286 dDocent_Contig_2793 1 . N G 163.519 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=38;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:35:-2.63623,-0.30103,0 ./.:.:.:.:.:.:.:. 1/1:5:0,5:0:0:5:169:-13.413,-1.50515,0 dDocent_Contig_2794 39 . A G 3104.58 . AB=0.0967742;ABP=46.79;AC=0;AF=0;AN=6;AO=3;CIGAR=1X2M1X3M1X3M5I2M;DP=127;DPB=128.154;DPRA=0;EPP=9.52472;EPPR=57.2971;GTI=0;LEN=1;MEANALT=3;MQM=35;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=969;RO=25;RPL=3;RPP=9.52472;RPPR=57.2971;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:38:6,0,32:6:234:0,32:0,1249:-101.245,-103.052,-122.286,0,-19.6243,-9.99133 0|0:31:3,3,24:3:105:3,24:105,970:-79.1909,-72.3673,-79.9996,0,-0.827833,-1.35354 0|0:58:16,0,42:16:630:0,42:0,1690:-134.863,-139.679,-191.505,0,-52.2216,-39.5783 dDocent_Contig_2795 11 . G A 128.343 . AB=0.16;ABP=53.2147;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=145;DPB=145;DPRA=0;EPP=31.2394;EPPR=289.645;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.992424;PAO=0;PQA=0;PQR=0;PRO=0;QA=527;QR=5195;RO=132;RPL=0;RPP=31.2394;RPPR=289.645;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=132;SRP=289.645;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:60:57,3:57:2250:3:119:0,-6.96679,-191.581 0/0:35:33,2:33:1312:2:82:0,-2.75637,-110.565 0/1:50:42,8:42:1633:8:326:-14.6582,0,-132.132 dDocent_Contig_2800 36 . A G 296.69 . AB=0.197368;ABP=63.4687;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1X;DP=142;DPB=142;DPRA=2.30303;EPP=35.5824;EPPR=278.787;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=597;QR=5019;RO=127;RPL=0;RPP=35.5824;RPPR=278.787;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=127;SRP=278.787;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:76:61,15:61:2420:15:597:-31.1918,0,-195.082 0/0:43:43,0:43:1694:0:0:0,-12.9443,-152.693 0/0:23:23,0:23:905:0:0:0,-6.92369,-81.746 dDocent_Contig_2801 204 . G A 209.998 . AB=0.261905;ABP=23.691;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=106;DPB=106;DPRA=0;EPP=33.4109;EPPR=202.786;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=494;QR=3300;RO=92;RPL=14;RPP=33.4109;RPPR=202.786;RPR=0;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=202.786;SRR=92;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:31,11:31:1117:11:387:-22.5227,0,-88.1966 0/0:26:25,1:25:882:1:35:0,-4.32815,-76.1962 0/0:38:36,2:36:1301:2:72:0,-4.6025,-110.554 dDocent_Contig_2803 33 . A T 262.026 . AB=0.137931;ABP=234.16;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X4M;DP=203;DPB=203;DPRA=0;EPP=63.8115;EPPR=356.96;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=988;QR=6143;RO=163;RPL=0;RPP=63.8115;RPPR=356.96;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=163;SRP=356.96;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:162:136,10,16:136:5162:10,16:342,558:-4.43678,-17.6216,-437.89,0,-395.531,-418.47 0|1:17:12,0,5:12:423:0,5:0,169:-10.4229,-14.0353,-48.4751,0,-34.7819,-33.2768 0|1:24:15,2,7:15:558:2,7:71,261:-16.8653,-15.5995,-60.6628,0,-39.8977,-43.5737 dDocent_Contig_2804 18 . T C 106.136 . AB=0.230769;ABP=19.3799;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=50;DPB=50;DPRA=2.16667;EPP=16.0391;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=218;QR=1728;RO=44;RPL=0;RPP=16.0391;RPPR=98.5551;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:20,6:20:785:6:218:-12.1365,0,-63.1443 0/0:13:13,0:13:510:0:0:0,-3.91339,-46.2471 0/0:11:11,0:11:433:0:0:0,-3.31133,-39.3232 dDocent_Contig_2805 16 . G A 754.704 . AB=0.341176;ABP=21.6339;AC=1;AF=0.166667;AN=6;AO=33;CIGAR=1X;DP=290;DPB=290;DPRA=0.818182;EPP=74.6689;EPPR=561.079;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.902724;PAO=0;PQA=0;PQR=0;PRO=0;QA=1303;QR=10114;RO=257;RPL=0;RPP=74.6689;RPPR=561.079;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=257;SRP=561.079;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:110:110,0:110:4324:0:0:0,-33.1133,-389.147 0/0:95:91,4:91:3557:4:163:0,-13.5394,-305.125 0/1:85:56,29:56:2233:29:1140:-77.2943,0,-175.551 dDocent_Contig_2807 62 . G A 30.4276 . AB=0.142857;ABP=26.2761;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=74;DPB=74;DPRA=0.792453;EPP=9.52472;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=2771;RO=71;RPL=3;RPP=9.52472;RPPR=157.185;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:32,0:32:1259:0:0:0,-9.63296,-113.585 0/1:21:18,3:18:714:3:120:-4.86627,0,-58.2653 0/0:21:21,0:21:798:0:0:0,-6.32163,-72.1268 dDocent_Contig_2808 22 . C G 587.646 . AB=0.178404;ABP=194.355;AC=3;AF=0.5;AN=6;AO=38;CIGAR=1X2M;DP=213;DPB=213;DPRA=0;EPP=3.23888;EPPR=361.303;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.105263;PAIREDR=0.933333;PAO=0;PQA=0;PQR=0;PRO=0;QA=1386;QR=6297;RO=165;RPL=0;RPP=85.5263;RPPR=361.303;RPR=38;RUN=1;SAF=20;SAP=3.23888;SAR=18;SRF=165;SRP=361.303;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:65:45,0,20:45:1711:0,20:0,723:-45.8197,-59.366,-199.695,0,-140.696,-134.676 0|1:76:56,10,10:56:2161:10,10:335,367:-13.1515,-2.90562,-177.373,0,-150.393,-174.495 0|1:72:64,0,8:64:2425:0,8:0,296:-5.31599,-24.5819,-223.395,0,-199.184,-196.776 dDocent_Contig_2809 15 . C T 89.5353 . AB=0.285714;ABP=8.59409;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=39;DPB=39;DPRA=1.12;EPP=11.6962;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=1405;RO=35;RPL=0;RPP=11.6962;RPPR=79.0118;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:10,4:10:399:4:159:-10.4764,0,-32.0539 0/0:12:12,0:12:480:0:0:0,-3.61236,-43.5506 0/0:13:13,0:13:526:0:0:0,-3.91339,-47.687 dDocent_Contig_2811 13 . G A 3778.19 . AB=0.730539;ABP=80.1041;AC=3;AF=0.5;AN=6;AO=122;CIGAR=1X;DP=167;DPB=167;DPRA=0;EPP=267.93;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4810;QR=1785;RO=45;RPL=0;RPP=267.93;RPPR=100.727;RPR=122;RUN=1;SAF=122;SAP=267.93;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:13,44:13:504:44:1729:-138.676,0,-28.5459 0/1:61:19,42:19:762:42:1666:-131.811,0,-50.5402 0/1:49:13,36:13:519:36:1415:-112.856,0,-32.3043 dDocent_Contig_2812 45 . A G 115.97 . AB=0.115044;ABP=148.461;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=5M1X12M;DP=197;DPB=189.889;DPRA=0.672619;EPP=31.2394;EPPR=321.885;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=516;QR=6596;RO=170;RPL=0;RPP=31.2394;RPPR=321.885;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=170;SRP=372.161;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:65:54,2,8:54:2090:2,8:68,317:-10.0507,-24.9777,-196.071,0,-170.58,-169.536 0|0:84:78,2,0:78:3038:2,0:78,0:0,-22.1469,-271.376,-23.4803,-271.978,-273.348 0|1:48:38,4,5:38:1468:4,5:152,199:-5.06902,-13.8652,-133.223,0,-118.041,-119.263 dDocent_Contig_2813 118 . C T 1482.34 . AB=0.639175;ABP=19.3299;AC=3;AF=0.5;AN=6;AO=62;CIGAR=1X2M;DP=97;DPB=97;DPRA=0;EPP=137.642;EPPR=70.3259;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2016;QR=830;RO=31;RPL=0;RPP=137.642;RPPR=70.3259;RPR=62;RUN=1;SAF=0;SAP=137.642;SAR=62;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:41:17,0,23:17:462:0,23:0,740:-54.7041,-59.8216,-96.2624,0,-36.5735,-29.6498 0|1:34:9,2,23:9:235:2,23:56,752:-58.0711,-56.3472,-74.1655,0,-13.9831,-11.4998 0|1:22:5,0,16:5:133:0,16:0,524:-40.9819,-42.487,-52.9389,0,-10.5519,-5.73539 dDocent_Contig_2814 49 . A G 2351.4 . AB=0.5625;ABP=7.89611;AC=3;AF=0.5;AN=6;AO=81;CIGAR=1X;DP=144;DPB=144;DPRA=0;EPP=178.9;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3146;QR=2378;RO=63;RPL=0;RPP=178.9;RPPR=139.813;RPR=81;RUN=1;SAF=81;SAP=178.9;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:61:26,35:26:984:35:1330:-101.6,0,-70.498 0/1:28:12,16:12:459:16:621:-47.7908,0,-33.2269 0/1:55:25,30:25:935:30:1195:-91.2723,0,-67.8831 dDocent_Contig_2815 124 . T C 1261.49 . AB=0.387755;ABP=19.0969;AC=3;AF=0.5;AN=6;AO=57;CIGAR=1X;DP=147;DPB=147;DPRA=0;EPP=126.784;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1944;QR=3023;RO=90;RPL=0;RPP=126.784;RPPR=198.443;RPR=57;RUN=1;SAF=0;SAP=126.784;SAR=57;SRF=0;SRP=198.443;SRR=90;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:17,29:17:590:29:996:-76.1042,0,-39.5798 0/1:44:24,20:24:817:20:670:-47.368,0,-60.5998 0/1:57:49,8:49:1616:8:278:-8.1993,0,-128.56 dDocent_Contig_2816 30 . T A 345.273 . AB=0.28;ABP=24.0302;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=141;DPB=141;DPRA=1.0989;EPP=33.4109;EPPR=278.787;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=564;QR=5024;RO=127;RPL=0;RPP=33.4109;RPPR=278.787;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=127;SRP=278.787;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:36,14:36:1415:14:564:-36.0502,0,-112.552 0/0:62:62,0:62:2433:0:0:0,-18.6639,-219.129 0/0:29:29,0:29:1176:0:0:0,-8.72987,-106.115 dDocent_Contig_2818 8 . G A 160.025 . AB=0.35;ABP=6.91895;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=63;DPB=63;DPRA=0;EPP=22.5536;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=338;QR=2027;RO=54;RPL=0;RPP=22.5536;RPPR=120.27;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:16,1:16:596:1:39:0,-1.22095,-50.0775 0/1:20:13,7:13:497:7:261:-17.8264,0,-39.0559 0/0:26:25,1:25:934:1:38:0,-4.02951,-80.5749 dDocent_Contig_2819 65 . T C 43.6185 . AB=0.1875;ABP=16.582;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=51;DPB=51;DPRA=0.914286;EPP=9.52472;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=1899;RO=48;RPL=3;RPP=9.52472;RPPR=107.241;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:256:0:0:0,-2.10721,-23.3862 0/1:16:13,3:13:510:3:118:-6.18572,0,-41.4308 0/0:28:28,0:28:1133:0:0:0,-8.42884,-102.25 dDocent_Contig_2820 59 . C A 115.067 . AB=0.230769;ABP=19.3799;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=110;DPB=110;DPRA=0.619048;EPP=16.0391;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=4069;RO=104;RPL=6;RPP=16.0391;RPPR=228.843;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:43:43,0:43:1639:0:0:0,-12.9443,-147.741 0/1:26:20,6:20:783:6:231:-13.3306,0,-62.9672 0/0:41:41,0:41:1647:0:0:0,-12.3422,-148.462 dDocent_Contig_2821 190 . G A 311.444 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=34;DPB=34;DPRA=3.66667;EPP=26.8965;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=436;QR=913;RO=23;RPL=11;RPP=26.8965;RPPR=52.9542;RPR=0;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:278:0:0:0,-2.10721,-25.3898 0/1:22:11,11:11:431:11:436:-32.9683,0,-32.5197 0/0:5:5,0:5:204:0:0:0,-1.50515,-18.744 dDocent_Contig_2822 70 . C A 59.5951 . AB=0.142857;ABP=49.5419;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=95;DPB=95;DPRA=1.58491;EPP=16.0391;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=223;QR=3224;RO=89;RPL=6;RPP=16.0391;RPPR=196.271;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:606:0:0:0,-5.11751,-54.8654 0/1:42:36,6:36:1350:6:223:-7.78342,0,-109.142 0/0:36:36,0:36:1268:0:0:0,-10.8371,-114.412 dDocent_Contig_2823 34 . C T 829.048 . AB=0.622222;ABP=8.84915;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X;DP=45;DPB=45;DPRA=0;EPP=63.8115;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1121;QR=676;RO=17;RPL=0;RPP=63.8115;RPPR=39.9253;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:7,9:7:272:9:355:-27.4939,0,-20.029 0/1:11:5,6:5:203:6:243:-18.9363,0,-15.3417 0/1:18:5,13:5:201:13:523:-41.9975,0,-13.0524 dDocent_Contig_2824 150 . G C 1081.98 . AB=0.5;ABP=3.0103;AC=4;AF=0.666667;AN=6;AO=43;CIGAR=1X;DP=77;DPB=77;DPRA=0;EPP=96.3836;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1458;QR=1161;RO=34;RPL=0;RPP=96.3836;RPPR=76.8404;RPR=43;RUN=1;SAF=0;SAP=96.3836;SAR=43;SRF=0;SRP=76.8404;SRR=34;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:21,14:21:708:14:455:-30.724,0,-53.4984 0/1:33:13,20:13:453:20:688:-52.3079,0,-31.1688 1/1:9:0,9:0:0:9:315:-28.6888,-2.70927,0 dDocent_Contig_2825 22 . C A 9825.75 . AB=0.477698;ABP=6.01287;AC=3;AF=0.5;AN=6;AO=332;CIGAR=1X;DP=695;DPB=695;DPRA=0;EPP=723.939;EPPR=791.255;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=0.983471;PAO=0;PQA=0;PQR=0;PRO=0;QA=13306;QR=14506;RO=363;RPL=0;RPP=723.939;RPPR=791.255;RPR=332;RUN=1;SAF=332;SAP=723.939;SAR=0;SRF=363;SRP=791.255;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:132:94,38:94:3746:38:1540:-99.0984,0,-297.405 0/1:99:29,70:29:1155:70:2756:-218.346,0,-74.428 0/1:464:240,224:240:9605:224:9010:-670.654,0,-724.144 dDocent_Contig_2826 110 . A C 4036.39 . AB=0.8;ABP=112.453;AC=4;AF=0.666667;AN=6;AO=149;CIGAR=1X;DP=178;DPB=178;DPRA=0;EPP=326.56;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5018;QR=976;RO=28;RPL=0;RPP=326.56;RPPR=63.8115;RPR=149;RUN=1;SAF=0;SAP=326.56;SAR=149;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:17,50:17:592:50:1680:-131.316,0,-33.4389 1/1:38:1,37:1:34:37:1263:-110.573,-8.04023,0 0/1:73:10,62:10:350:62:2075:-165.273,0,-10.0679 dDocent_Contig_2827 45 . C T 46.0579 . AB=0.121951;ABP=53.9075;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=115;DPB=115;DPRA=0.837209;EPP=16.0391;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=4169;RO=107;RPL=0;RPP=16.0391;RPPR=235.358;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:36,5:36:1396:5:201:-6.12866,0,-113.564 0/0:43:41,0:41:1597:0:0:0,-12.3422,-143.595 0/0:31:30,1:30:1176:1:38:0,-5.53466,-102.324 dDocent_Contig_2828 10 . T C 97.1961 . AB=0.152174;ABP=51.3492;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=138;DPB=138;DPRA=1;EPP=18.2106;EPPR=287.473;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=5199;RO=131;RPL=0;RPP=18.2106;RPPR=287.473;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=131;SRP=287.473;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:44:44,0:44:1734:0:0:0,-13.2453,-156.289 0/1:46:39,7:39:1530:7:278:-11.5435,0,-124.101 0/0:48:48,0:48:1935:0:0:0,-14.4494,-174.343 dDocent_Contig_2829 15 . A C 290.173 . AB=0.220588;ABP=49.1222;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=116;DPB=116;DPRA=0.708333;EPP=35.5824;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=581;QR=3903;RO=101;RPL=0;RPP=35.5824;RPPR=222.329;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:46,9:46:1764:9:356:-15.8451,0,-142.433 0/1:13:7,6:7:256:6:225:-16.6951,0,-19.4706 0/0:48:48,0:48:1883:0:0:0,-14.4494,-169.683 dDocent_Contig_2830 9 . C T 61.3823 . 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AB=0.2;ABP=155.448;AC=3;AF=0.5;AN=6;AO=39;CIGAR=1X;DP=195;DPB=195;DPRA=0;EPP=87.6977;EPPR=337.417;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.923077;PAIREDR=0.922078;PAO=0;PQA=0;PQR=0;PRO=0;QA=1561;QR=6146;RO=154;RPL=0;RPP=87.6977;RPPR=337.417;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=154;SRP=337.417;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:47,10:47:1880:10:402:-19.2541,0,-152.142 0/1:54:42,12:42:1660:12:477:-27.0228,0,-133.372 0/1:83:65,17:65:2606:17:682:-36.622,0,-209.579 dDocent_Contig_2832 21 . G C 1149.85 . AB=0.328467;ABP=38.0233;AC=3;AF=0.5;AN=6;AO=45;CIGAR=1X;DP=137;DPB=137;DPRA=0;EPP=100.727;EPPR=202.786;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.98913;PAO=0;PQA=0;PQR=0;PRO=0;QA=1786;QR=3610;RO=92;RPL=0;RPP=100.727;RPPR=202.786;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:35,12:35:1366:12:484:-29.7621,0,-109.049 0/1:44:22,22:22:860:22:860:-64.4577,0,-64.4591 0/1:46:35,11:35:1384:11:442:-26.2878,0,-110.975 dDocent_Contig_2833 11 . T C 3482.82 . AB=0.788889;ABP=68.251;AC=4;AF=0.666667;AN=6;AO=108;CIGAR=1X3M1X;DP=127;DPB=127;DPRA=0;EPP=237.529;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4201;QR=747;RO=19;RPL=0;RPP=237.529;RPPR=44.2683;RPR=108;RUN=1;SAF=108;SAP=237.529;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:37:0,37:0:0:37:1418:-127.892,-11.1381,0 0|1:33:9,24:9:350:24:933:-74.3467,0,-21.9267 0|1:57:10,47:10:397:47:1850:-149.566,0,-18.931 dDocent_Contig_2834 58 . A G 44.6199 . 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AB=0.338346;ABP=33.1987;AC=3;AF=0.5;AN=6;AO=45;CIGAR=1X;DP=133;DPB=133;DPRA=0;EPP=100.727;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1740;QR=3489;RO=88;RPL=0;RPP=100.727;RPPR=194.1;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:26,16:26:1015:16:631:-44.4781,0,-79.0004 0/1:50:36,14:36:1442:14:527:-32.7064,0,-114.981 0/1:41:26,15:26:1032:15:582:-40.3683,0,-80.8274 dDocent_Contig_2838 13 . T C 1589.21 . AB=0.0732064;ABP=1083.62;AC=0;AF=0;AN=6;AO=50;CIGAR=1X2M2X1M2X4M1X1M2X1M1X1M2X;DP=683;DPB=680.333;DPRA=0;EPP=111.584;EPPR=76.8404;GTI=0;LEN=1;MEANALT=54;MQM=16.56;MQMR=60;NS=3;NUMALT=6;ODDS=2.22045e-16;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=824;QR=1328;RO=34;RPL=0;RPP=111.584;RPPR=76.8404;RPR=50;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:251:16,11,36,15,2,4,3:16:628:11,36,15,2,4,3:182,834,534,77,102,115:-53.3625,-47.9735,-96.3198,0,-41.4543,-40.8211,-16.2012,-57.6544,-9.68136,-63.3443,-51.8587,-93.311,-45.338,-61.5395,-102.915,-52.1129,-93.5652,-45.5925,-61.7937,-97.4505,-102.567,-48.7472,-90.1995,-42.2265,-58.428,-94.085,-94.3391,-99.5021 0|0:182:9,17,16,6,10,2,4:9:356:17,16,6,10,2,4:273,374,226,376,54,151:-28.0884,-15.8483,-40.0349,-5.32665,-19.6841,-29.8148,-12.6457,-27.0011,-16.4796,-40.1443,0,-14.3559,-3.83414,-11.1531,-26.2948,-27.0813,-41.4363,-30.915,-38.2341,-25.5887,-55.7837,-18.5888,-32.944,-22.4226,-29.7417,-17.0962,-44.1771,-46.6893 0|0:250:9,22,36,11,0,14,18:9:344:22,36,11,0,14,18:369,819,353,0,378,697:-82.9927,-64.8336,-86.4389,-28.8022,-36.1661,-46.1934,-59.7234,-67.0839,-31.0528,-84.6405,-85.702,-93.0616,-57.0305,-87.9518,-113.93,-59.6866,-67.0475,-31.0167,-61.9367,-87.9149,-83.7005,-28.671,-36.0317,0,-30.9211,-56.8999,-30.8844,-51.4813 dDocent_Contig_2839 49 . C T 109.212 . AB=0.13253;ABP=100.36;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=120;DPB=120;DPRA=0;EPP=31.2394;EPPR=233.186;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=491;QR=4152;RO=106;RPL=0;RPP=31.2394;RPPR=233.186;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:43,8:43:1700:8:309:-12.4389,0,-137.5 0/1:31:28,3:28:1095:3:106:-0.554807,0,-89.5123 0/0:37:35,2:35:1357:2:76:0,-3.92457,-115.175 dDocent_Contig_2840 33 . C A 343.03 . AB=0.128;ABP=303.507;AC=2;AF=0.333333;AN=6;AO=36;CIGAR=1X;DP=392;DPB=392;DPRA=0;EPP=81.1833;EPPR=776.054;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.944444;PAIREDR=0.988764;PAO=0;PQA=0;PQR=0;PRO=0;QA=1402;QR=13982;RO=356;RPL=0;RPP=81.1833;RPPR=776.054;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=356;SRP=776.054;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:142:138,4:138:5386:4:153:0,-28.6083,-470.498 0/1:136:115,21:115:4559:21:808:-32.0983,0,-369.33 0/1:114:103,11:103:4037:11:441:-5.72762,0,-329.023 dDocent_Contig_2841 15 . G C 271.897 . AB=0.266667;ABP=24.2907;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=136;DPB=136;DPRA=0.989011;EPP=29.068;EPPR=270.101;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=469;QR=4860;RO=123;RPL=0;RPP=29.068;RPPR=270.101;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:40,0:40:1570:0:0:0,-12.0412,-141.541 0/1:45:33,12:33:1300:12:469:-29.0136,0,-103.717 0/0:51:50,0:50:1990:0:0:0,-15.0515,-178.934 dDocent_Contig_2842 113 . T C 2848.82 . AB=0.83;ABP=97.5996;AC=4;AF=0.666667;AN=6;AO=115;CIGAR=1X;DP=136;DPB=136;DPRA=0;EPP=195.629;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.886957;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3638;QR=644;RO=20;RPL=0;RPP=252.73;RPPR=46.4397;RPR=115;RUN=1;SAF=7;SAP=195.629;SAR=108;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:12,57:12:382:57:1845:-145.542,0,-13.9178 1/1:36:3,32:3:105:32:1000:-80.5403,-0.887354,0 0/1:31:5,26:5:157:26:793:-62.323,0,-5.10842 dDocent_Contig_2843 28 . A T 60.8588 . AB=0.181818;ABP=22.3561;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=92;DPB=92;DPRA=0.628571;EPP=11.6962;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=3397;RO=87;RPL=0;RPP=11.6962;RPPR=191.928;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:18,4:18:719:4:154:-7.60876,0,-58.4133 0/0:42:41,0:41:1573:0:0:0,-12.3422,-141.646 0/0:28:28,0:28:1105:0:0:0,-8.42884,-99.7305 dDocent_Contig_2844 41 . T G 515.521 . AB=0.18;ABP=47.4821;AC=0;AF=0;AN=6;AO=9;CIGAR=14M1X4M;DP=101;DPB=101.579;DPRA=1.96078;EPP=22.5536;EPPR=150.67;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=348;QR=2646;RO=68;RPL=0;RPP=22.5536;RPPR=150.67;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:50:18,4,19,9:18:689:4,19,9:144,714,348:-53.075,-46.7465,-102.084,0,-44.7969,-50.8237,-29.9115,-74.7089,-27.9627,-83.7472 0|0:22:21,0,0,0:21:819:0,0,0:0,0,0:0,-6.32163,-73.6674,-6.32163,-73.6674,-73.6674,-6.32163,-73.6674,-73.6674,-73.6674 0|0:29:29,0,0,0:29:1138:0,0,0:0,0,0:0,-8.72987,-102.712,-8.72987,-102.712,-102.712,-8.72987,-102.712,-102.712,-102.712 dDocent_Contig_2845 25 . T A 778.376 . AB=0.31;ABP=34.3664;AC=2;AF=0.333333;AN=6;AO=31;CIGAR=1X;DP=135;DPB=135;DPRA=1.42857;EPP=70.3259;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1231;QR=4109;RO=104;RPL=0;RPP=70.3259;RPPR=228.843;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:35:35,0:35:1365:0:0:0,-10.536,-123.097 0/1:52:33,19:33:1307:19:756:-52.7117,0,-102.239 0/1:48:36,12:36:1437:12:475:-28.6488,0,-115.123 dDocent_Contig_2846 28 . A G 115.243 . AB=0.216216;ABP=28.8919;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X;DP=37;DPB=37;DPRA=0;EPP=20.3821;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=294;QR=1149;RO=29;RPL=0;RPP=20.3821;RPPR=65.983;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:14,3:14:541:3:99:-4.11586,0,-43.9114 0/1:12:8,4:8:322:4:157:-10.8962,0,-25.7366 0/1:8:7,1:7:286:1:38:-1.38903,0,-23.7066 dDocent_Contig_2847 13 . A G 409.741 . AB=0.257143;ABP=38.8706;AC=1;AF=0.166667;AN=6;AO=21;CIGAR=1X;DP=162;DPB=162;DPRA=0;EPP=48.6112;EPPR=309.188;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.893617;PAO=0;PQA=0;PQR=0;PRO=0;QA=818;QR=5436;RO=141;RPL=0;RPP=48.6112;RPPR=309.188;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=141;SRP=309.188;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:49:47,2:47:1809:2:74:0,-7.72504,-156.031 0/0:43:42,1:42:1621:1:38:0,-9.14702,-142.347 0/1:70:52,18:52:2006:18:706:-42.798,0,-159.682 dDocent_Contig_2849 106 . N G 56.7292 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=2X;DP=2;DPB=8;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=1;PQA=31;PQR=0;PRO=0;QA=63;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:63:-5.67184,-0.60206,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_2852 30 . A C 442.078 . AB=0.216981;ABP=76.7584;AC=3;AF=0.5;AN=6;AO=23;CIGAR=1X;DP=106;DPB=106;DPRA=0;EPP=52.9542;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=895;QR=3299;RO=83;RPL=0;RPP=52.9542;RPPR=183.243;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:21,8:21:835:8:318:-20.2573,0,-66.7352 0/1:30:21,9:21:847:9:343:-22.1928,0,-67.5116 0/1:47:41,6:41:1617:6:234:-7.28058,0,-131.608 dDocent_Contig_2853 187 . A C 363.531 . AB=0.4;ABP=6.05036;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=53;DPB=53;DPRA=0;EPP=35.5824;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=547;QR=1277;RO=37;RPL=15;RPP=35.5824;RPPR=83.3548;RPR=0;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=83.3548;SRR=37;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:10,13:10:317:13:498:-37.8691,0,-21.5455 0/1:11:10,1:10:338:1:40:-0.684349,0,-27.4283 0/0:18:17,1:17:622:1:9:0,-4.51854,-55.4029 dDocent_Contig_2855 99 . N A 488.991 . AB=0.785714;ABP=12.937;AC=4;AF=1;AN=4;AO=13;CIGAR=10X4I1M1X3M1I2M;DP=16;DPB=20.7059;DPRA=0;EPP=31.2394;EPPR=0;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=0;NS=2;NUMALT=2;ODDS=0;PAIRED=0.846154;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=488;QR=0;RO=0;RPL=13;RPP=31.2394;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,0,2:0:0:0,2:0,77:-7.30914,-7.30914,-7.30914,-0.60206,-0.60206,0 1|1:14:0,3,11:0:0:3,11:113,411:-43.2878,-34.0271,-33.124,-9.63645,0,-6.32512 .:.:.:.:.:.:.:. dDocent_Contig_2856 143 . G A 89.5119 . AB=0.238095;ABP=15.5221;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=63;DPB=63;DPRA=1;EPP=13.8677;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=186;QR=2262;RO=58;RPL=0;RPP=13.8677;RPPR=128.956;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=128.956;SRR=58;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:34,0:34:1325:0:0:0,-10.235,-119.516 0/1:21:16,5:16:626:5:186:-10.7751,0,-50.3526 0/0:8:8,0:8:311:0:0:0,-2.40824,-28.3482 dDocent_Contig_2857 21 . C A 603.661 . AB=0.232558;ABP=83.1528;AC=3;AF=0.5;AN=6;AO=30;CIGAR=1X;DP=129;DPB=129;DPRA=0;EPP=68.1545;EPPR=215.815;GTI=0;LEN=1;MEANALT=1.33333;MQM=55.3667;MQMR=53.0714;NS=3;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=0.438776;PAO=0;PQA=0;PQR=0;PRO=0;QA=1178;QR=3951;RO=98;RPL=0;RPP=68.1545;RPPR=215.815;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:16,19:16:651:19:752:-57.4686,0,-47.5179 0/1:39:33,5:33:1329:5:191:-5.9029,0,-106.692 0/1:55:49,6:49:1971:6:235:-2.47108,0,-159.26 dDocent_Contig_2859 24 . A G 256.16 . AB=0.344828;ABP=9.07545;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=73;DPB=73;DPRA=1.02083;EPP=26.8965;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=59.0909;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.0909091;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=439;QR=2475;RO=62;RPL=0;RPP=26.8965;RPPR=137.642;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:964:0:0:0,-7.22472,-87.0602 0/1:29:19,10:19:757:10:398:-27.4399,0,-59.7177 0/0:20:19,1:19:754:1:41:0,-1.92743,-64.0923 dDocent_Contig_2860 41 . G A 681.855 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=24;CIGAR=1X;DP=133;DPB=133;DPRA=0.555556;EPP=55.1256;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=966;QR=4120;RO=109;RPL=0;RPP=55.1256;RPPR=239.701;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:23,23:23:861:23:925:-69.7083,0,-63.9462 0/0:63:63,0:63:2378:0:0:0,-18.9649,-214.221 0/0:24:23,1:23:881:1:41:0,-3.13015,-75.5099 dDocent_Contig_2861 140 . T C 2665.85 . AB=0.786325;ABP=86.3243;AC=3;AF=0.5;AN=6;AO=92;CIGAR=1X;DP=117;DPB=117;DPRA=0;EPP=202.786;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3405;QR=963;RO=25;RPL=0;RPP=202.786;RPPR=57.2971;RPR=92;RUN=1;SAF=0;SAP=202.786;SAR=92;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:10,40:10:383:40:1463:-116.886,0,-19.7735 0/1:40:10,30:10:385:30:1134:-90.3198,0,-22.9655 0/1:27:5,22:5:195:22:808:-64.902,0,-9.79639 dDocent_Contig_2862 9 . C T 267.468 . AB=0.233333;ABP=40.0701;AC=1;AF=0.166667;AN=6;AO=20;CIGAR=1X;DP=155;DPB=155;DPRA=0;EPP=46.4397;EPPR=279.045;GTI=0;LEN=1;MEANALT=1;MQM=52.4;MQMR=55.7704;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.718519;PAO=0;PQA=0;PQR=0;PRO=0;QA=744;QR=5175;RO=135;RPL=0;RPP=46.4397;RPPR=296.159;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=133;SRP=279.045;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:44:42,2:42:1599:2:74:0,-6.241,-136.996 0/1:60:46,14:46:1752:14:516:-28.5706,0,-139.336 0/0:51:47,4:47:1824:4:154:0,-1.17896,-148.761 dDocent_Contig_2863 75 . T C 603.762 . AB=0.362319;ABP=14.3712;AC=1;AF=0.166667;AN=6;AO=25;CIGAR=1X;DP=192;DPB=192;DPRA=1.12195;EPP=57.2971;EPPR=365.646;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=915;QR=6036;RO=167;RPL=25;RPP=57.2971;RPPR=365.646;RPR=0;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=167;SRP=365.646;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:44,25:44:1640:25:915:-61.899,0,-127.102 0/0:61:61,0:61:2172:0:0:0,-18.3628,-195.736 0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.411 dDocent_Contig_2865 51 . A C 1136.68 . AB=0.242857;ABP=123.62;AC=3;AF=0.5;AN=6;AO=51;CIGAR=1X;DP=210;DPB=210;DPRA=0;EPP=113.755;EPPR=346.103;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.993671;PAO=0;PQA=0;PQR=0;PRO=0;QA=2017;QR=6131;RO=158;RPL=51;RPP=113.755;RPPR=346.103;RPR=0;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=158;SRP=346.103;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:76:61,14:61:2353:14:535:-25.5008,0,-188.97 0/1:85:68,17:68:2645:17:681:-36.0336,0,-212.61 0/1:49:29,20:29:1133:20:801:-57.6569,0,-87.5079 dDocent_Contig_2866 40 . C T 1162.22 . AB=0.488372;ABP=3.1113;AC=3;AF=0.5;AN=6;AO=42;CIGAR=1X;DP=86;DPB=86;DPRA=0;EPP=94.2121;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1629;QR=1745;RO=44;RPL=0;RPP=94.2121;RPPR=98.5551;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:13,16:13:517:16:623:-47.6771,0,-38.1478 0/1:37:21,16:21:828:16:604:-43.5476,0,-63.6975 0/1:20:10,10:10:400:10:402:-30.5196,0,-30.3384 dDocent_Contig_2867 10 . T A 2415.69 . AB=0.26969;ABP=196.054;AC=3;AF=0.5;AN=6;AO=113;CIGAR=1X;DP=419;DPB=419;DPRA=0;EPP=248.387;EPPR=667.481;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4137;QR=12008;RO=306;RPL=0;RPP=248.387;RPPR=667.481;RPR=113;RUN=1;SAF=113;SAP=248.387;SAR=0;SRF=306;SRP=667.481;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:188:135,53:135:5262:53:1933:-117.648,0,-416.886 0/1:90:62,28:62:2432:28:1026:-65.5622,0,-191.96 0/1:141:109,32:109:4314:32:1178:-63.8823,0,-345.787 dDocent_Contig_2868 17 . T C 53.3633 . AB=0.125;ABP=61.6401;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=167;DPB=167;DPRA=0;EPP=22.5536;EPPR=346.103;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=359;QR=6289;RO=158;RPL=0;RPP=22.5536;RPPR=346.103;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=158;SRP=346.103;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:59:57,2:57:2273:2:82:0,-9.98109,-196.96 0/1:48:42,6:42:1664:6:236:-7.16024,0,-135.539 0/0:60:59,1:59:2352:1:41:0,-13.9672,-207.742 dDocent_Contig_2869 8 . G A 173.036 . AB=0.214286;ABP=32.7905;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=129;DPB=129;DPRA=0.965517;EPP=22.5536;EPPR=263.587;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=349;QR=4578;RO=120;RPL=0;RPP=22.5536;RPPR=263.587;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:35:35,0:35:1338:0:0:0,-10.536,-120.707 0/1:42:33,9:33:1239:9:349:-19.1275,0,-99.1584 0/0:52:52,0:52:2001:0:0:0,-15.6536,-180.327 dDocent_Contig_2870 46 . G A 2064.28 . AB=0.686275;ABP=18.3809;AC=4;AF=0.666667;AN=6;AO=64;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=141.985;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2493;QR=640;RO=16;RPL=0;RPP=141.985;RPPR=37.7539;RPR=64;RUN=1;SAF=64;SAP=141.985;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:11,19:11:439:19:756:-59.3331,0,-30.8321 0/1:21:5,16:5:201:16:625:-50.2603,0,-12.1495 1/1:29:0,29:0:0:29:1112:-100.357,-8.72987,0 dDocent_Contig_2871 7 . A C 283.36 . AB=0.213333;ABP=56.5443;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=112;DPB=112;DPRA=0;EPP=42.0968;EPPR=207.129;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=671;QR=3535;RO=94;RPL=0;RPP=42.0968;RPPR=207.129;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:35,2:35:1322:2:74:0,-4.11223,-112.243 0/1:39:34,5:34:1291:5:186:-5.35972,0,-104.742 0/1:36:25,11:25:922:11:411:-26.4991,0,-72.4489 dDocent_Contig_2872 48 . A C 408.92 . AB=0.357143;ABP=10.4553;AC=1;AF=0.166667;AN=6;AO=17;CIGAR=1X;DP=115;DPB=115;DPRA=2.11364;EPP=39.9253;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=690;QR=3813;RO=98;RPL=0;RPP=39.9253;RPPR=215.815;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:27,15:27:1022:15:608:-42.4148,0,-79.6296 0/0:51:49,2:49:1947:2:82:0,-7.57285,-167.655 0/0:22:22,0:22:844:0:0:0,-6.62266,-76.2663 dDocent_Contig_2873 43 . T C 181.639 . AB=0.212766;ABP=36.6912;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=58;DPB=58;DPRA=2.13636;EPP=24.725;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.875;PAO=0;PQA=0;PQR=0;PRO=0;QA=390;QR=1902;RO=48;RPL=0;RPP=24.725;RPPR=107.241;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:24,4:24:950:4:148:-5.24934,0,-77.3722 0/0:11:11,0:11:435:0:0:0,-3.31133,-39.5016 0/1:19:13,6:13:517:6:242:-16.4374,0,-41.1577 dDocent_Contig_2874 17 . C G 492.63 . AB=0.28;ABP=34.5401;AC=1;AF=0.166667;AN=6;AO=23;CIGAR=1X;DP=248;DPB=248;DPRA=1.24648;EPP=52.9542;EPPR=491.592;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.956522;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=885;QR=8977;RO=225;RPL=0;RPP=52.9542;RPPR=491.592;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=225;SRP=491.592;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:71:71,0:71:2820:0:0:0,-21.3731,-253.917 0/0:102:100,2:100:3982:2:70:0,-24.0605,-351.741 0/1:75:54,21:54:2175:21:815:-51.0869,0,-173.341 dDocent_Contig_2875 45 . C T 1855.71 . AB=0.64;ABP=11.5225;AC=4;AF=0.666667;AN=6;AO=59;CIGAR=1X3M;DP=78;DPB=78;DPRA=0;EPP=131.127;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2293;QR=602;RO=15;RPL=0;RPP=131.127;RPPR=35.5824;RPR=59;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:28:1,0,27:1:40:0,27:0,1017:-87.8189,-88.1199,-91.4158,-4.43316,-8.12781,0 0|1:29:9,4,16:9:364:4,16:153,642:-50.2035,-40.3624,-69.1712,0,-17.4795,-25.2103 0|1:21:5,0,16:5:198:0,16:0,634:-51.0716,-52.5767,-68.8737,0,-16.6926,-11.8761 dDocent_Contig_2876 37 . G A 219.382 . AB=0.272727;ABP=17.8158;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=85;DPB=85;DPRA=1.26923;EPP=22.5536;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=367;QR=3024;RO=76;RPL=0;RPP=22.5536;RPPR=168.042;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:24,9:24:942:9:367:-23.4611,0,-75.1456 0/0:33:33,0:33:1336:0:0:0,-9.93399,-120.499 0/0:19:19,0:19:746:0:0:0,-5.71957,-67.4601 dDocent_Contig_2877 64 . T C 259.16 . AB=0.208333;ABP=56.2114;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=92;DPB=92;DPRA=1.8;EPP=35.5824;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=560;QR=3032;RO=77;RPL=15;RPP=35.5824;RPPR=170.214;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:24,4:24:939:4:164:-6.72106,0,-76.3794 0/1:44:33,11:33:1321:11:396:-22.7178,0,-105.911 0/0:20:20,0:20:772:0:0:0,-6.0206,-69.7844 dDocent_Contig_2878 7 . A T 4815.42 . AB=0.0381944;ABP=536.499;AC=0;AF=0;AN=6;AO=11;CIGAR=2X3M;DP=288;DPB=287.6;DPRA=0;EPP=26.8965;EPPR=102.898;GTI=0;LEN=1;MEANALT=7.33333;MQM=54;MQMR=60;NS=3;NUMALT=6;ODDS=5.55112e-17;PAIRED=1;PAIREDR=0.326087;PAO=0;PQA=0;PQR=0;PRO=0;QA=414;QR=1768;RO=46;RPL=0;RPP=26.8965;RPPR=102.898;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:91:20,9,6,0,47,5,4:20:768:9,6,0,47,5,4:345,226,0,1712,200,161:-130.902,-129.142,-189.482,-118.441,-173.713,-179.692,-136.923,-192.191,-181.498,-199.978,0,-55.3287,-44.6022,-63.0864,-48.938,-120.443,-175.714,-165.02,-183.5,-46.603,-181.994,-124.087,-179.357,-168.663,-187.143,-50.248,-170.665,-185.939 0|0:83:13,7,3,4,50,0,3:13:499:7,3,4,50,0,3:269,111,147,1846,0,122:-142.79,-132.081,-170.937,-137.64,-163.982,-177.702,-134.69,-161.031,-166.592,-174.451,0,-26.3701,-31.9146,-28.9639,-25.9266,-146.703,-173.044,-178.605,-175.655,-40.9781,-187.668,-136.994,-163.335,-168.896,-165.946,-31.2668,-177.959,-177.056 0|0:114:13,5,2,6,74,1,6:13:501:5,2,6,74,1,6:183,77,219,2735,41,243:-213.373,-202.358,-241.996,-210.979,-237.195,-251.52,-199.673,-225.888,-234.51,-239.01,0,-26.2236,-34.8446,-23.539,-18.8757,-213.901,-240.117,-248.738,-237.432,-37.7666,-254.744,-197.939,-224.154,-232.776,-221.469,-21.8014,-235.698,-237.276 dDocent_Contig_2879 18 . C T 2803.11 . AB=0.108527;ABP=174.725;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X3M;DP=169;DPB=169;DPRA=0;EPP=33.4109;EPPR=133.299;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=547;QR=2348;RO=60;RPL=0;RPP=33.4109;RPPR=133.299;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:40:23,17,0:23:912:17,0:672,0:-48.7711,0,-70.3467,-55.6948,-75.4642,-130.764 0|1:56:31,14,10:31:1195:14,10:553,385:-36.1789,0,-93.9044,-13.9084,-66.5126,-109.011 0|1:73:6,62,4:6:241:62,4:2453,162:-200.055,0,-1.19308,-188.503,-6.49785,-207.158 dDocent_Contig_2881 26 . C G 3683.45 . AB=0.833333;ABP=84.0786;AC=4;AF=0.666667;AN=6;AO=116;CIGAR=2X;DP=130;DPB=130;DPRA=0;EPP=254.901;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4404;QR=536;RO=14;RPL=0;RPP=254.901;RPPR=33.4109;RPR=116;RUN=1;SAF=116;SAP=254.901;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:46:0,46:0:0:46:1764:-159.01,-13.8474,0 0|1:42:8,34:8:306:34:1278:-102.657,0,-15.2567 0|1:42:6,36:6:230:36:1362:-110.201,0,-8.41852 dDocent_Contig_2882 64 . C G 192.329 . AB=0.285714;ABP=16.9698;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=131;DPB=131;DPRA=0.729167;EPP=24.725;EPPR=265.758;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.991736;PAO=0;PQA=0;PQR=0;PRO=0;QA=344;QR=4120;RO=121;RPL=10;RPP=24.725;RPPR=265.758;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=121;SRP=265.758;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:25,10:25:841:10:344:-20.7558,0,-65.466 0/0:48:48,0:48:1634:0:0:0,-14.4494,-147.351 0/0:48:48,0:48:1645:0:0:0,-14.4494,-148.341 dDocent_Contig_2883 8 . G T 1023.4 . AB=0.0565371;ABP=486.42;AC=0;AF=0;AN=6;AO=23;CIGAR=1X2M2X;DP=423;DPB=423;DPRA=0;EPP=52.9542;EPPR=639.252;GTI=0;LEN=1;MEANALT=6.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.972696;PAO=0;PQA=0;PQR=0;PRO=0;QA=884;QR=11336;RO=293;RPL=0;RPP=52.9542;RPPR=639.252;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=293;SRP=639.252;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:142:92,9,10,26:92:3549:9,10,26:335,390,1043:-58.2147,-58.4962,-347.22,-53.8576,-317.876,-342.283,0,-264.025,-259.389,-283.615 0|0:141:89,7,23,14:89:3433:7,23,14:272,905,557:-47.648,-52.0889,-331.888,0,-259.555,-274.983,-28.5787,-288.135,-236.047,-306.272 0|0:140:112,7,7,5:112:4354:7,7,5:277,285,199:0,-10.918,-366.586,-10.2015,-345.182,-365.873,-17.3298,-352.308,-351.595,-373.601 dDocent_Contig_2884 34 . A T 276.68 . AB=0.272727;ABP=22.751;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=122;DPB=122;DPRA=1.12821;EPP=29.068;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=471;QR=4311;RO=109;RPL=0;RPP=29.068;RPPR=239.701;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:41,0:41:1614:0:0:0,-12.3422,-145.404 0/1:44:32,12:32:1283:12:471:-29.4919,0,-102.494 0/0:36:36,0:36:1414:0:0:0,-10.8371,-127.509 dDocent_Contig_2885 28 . G A 44962.5 . AB=0.635371;ABP=367.514;AC=3;AF=0.5;AN=6;AO=1455;CIGAR=1X;DP=2290;DPB=2290;DPRA=0;EPP=3136.5;EPPR=1727.26;GTI=0;LEN=1;MEANALT=2.33333;MQM=59.8261;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.972509;PAIREDR=0.914392;PAO=0;PQA=0;PQR=0;PRO=0;QA=57739;QR=32010;RO=806;RPL=0;RPP=3162.5;RPPR=1753.22;RPR=1455;RUN=1;SAF=1452;SAP=3136.5;SAR=3;SRF=803;SRP=1727.26;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:834:299,525:299:11876:525:20759:-1617.33,0,-819.604 0/1:776:266,498:266:10626:498:19751:-1538.24,0,-725.269 0/1:680:241,432:241:9508:432:17229:-1346.21,0,-652.175 dDocent_Contig_2886 107 . N T 2981.12 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=113;CIGAR=1X;DP=113;DPB=113;DPRA=0;EPP=248.387;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=3298;QR=0;RO=0;RPL=0;RPP=248.387;RPPR=0;RPR=113;RUN=1;SAF=0;SAP=248.387;SAR=113;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:44:0,44:0:0:44:1279:-115.379,-13.2453,0 1/1:37:0,37:0:0:37:1066:-96.2069,-11.1381,0 1/1:32:0,32:0:0:32:953:-86.0492,-9.63296,0 dDocent_Contig_2887 96 . T A 639.418 . AB=0.37037;ABP=14.8328;AC=2;AF=0.333333;AN=6;AO=35;CIGAR=1X;DP=136;DPB=136;DPRA=0;EPP=79.0118;EPPR=220.158;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.95;PAO=0;PQA=0;PQR=0;PRO=0;QA=1188;QR=3483;RO=100;RPL=35;RPP=79.0118;RPPR=220.158;RPR=0;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:25,25:25:855:25:851:-61.5032,0,-61.8607 0/1:30:25,5:25:880:5:163:-5.96102,0,-70.4879 0/0:55:50,5:50:1748:5:174:0,-0.554696,-141.602 dDocent_Contig_2888 98 . N T 66.4848 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 dDocent_Contig_2889 18 . T G 1734.2 . AB=0.72093;ABP=21.2406;AC=4;AF=0.666667;AN=6;AO=53;CIGAR=1X;DP=65;DPB=65;DPRA=0;EPP=118.098;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2099;QR=487;RO=12;RPL=0;RPP=118.098;RPPR=29.068;RPR=53;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:22:0,22:0:0:22:880:-79.5083,-6.62266,0 0/1:27:6,21:6:244:21:818:-65.8017,0,-14.2108 0/1:16:6,10:6:243:10:401:-31.6329,0,-17.4315 dDocent_Contig_2890 80 . C T 119.368 . AB=0.13913;ABP=133.091;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=115;DPB=115;DPRA=0;EPP=37.7539;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.959596;PAO=0;PQA=0;PQR=0;PRO=0;QA=555;QR=3449;RO=99;RPL=16;RPP=37.7539;RPPR=217.986;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:34,7:34:1185:7:242:-9.77493,0,-94.6112 0/1:34:29,5:29:1025:5:173:-5.67324,0,-82.3249 0/1:40:36,4:36:1239:4:140:-0.903378,0,-99.7705 dDocent_Contig_2891 139 . A C 492.369 . AB=0.17033;ABP=174.819;AC=2;AF=0.333333;AN=6;AO=33;CIGAR=1M1X;DP=273;DPB=276.5;DPRA=0;EPP=74.6689;EPPR=504.62;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1240;QR=8945;RO=231;RPL=0;RPP=74.6689;RPPR=504.62;RPR=33;RUN=1;SAF=0;SAP=74.6689;SAR=33;SRF=0;SRP=504.62;SRR=231;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:91:88,0,2:88:3412:0,2:0,74:0,-26.4906,-306.844,-20.3786,-300.792,-300.19 0|1:101:72,6,22:72:2793:6,22:232,821:-45.553,-48.1659,-275.846,0,-210.442,-222.876 0|1:81:71,0,9:71:2740:0,9:0,345:-7.20681,-28.5799,-253.603,0,-225.286,-222.577 dDocent_Contig_2893 28 . C T 3036.38 . AB=0.176471;ABP=49.3776;AC=0;AF=0;AN=6;AO=9;CIGAR=1X3M1X3M1X;DP=201;DPB=201;DPRA=0;EPP=22.5536;EPPR=196.271;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=360;QR=3506;RO=89;RPL=0;RPP=22.5536;RPPR=196.271;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:51:20,9,22:20:785:9,22:360,874:-65.929,-42.2932,-104.143,0,-34.8984,-57.9336 0|0:64:13,0,51:13:499:0,51:0,2026:-163.27,-167.184,-208.136,0,-41.3387,-25.9862 0|0:86:56,0,30:56:2222:0,30:0,1173:-79.9616,-96.8193,-279.733,0,-183.306,-174.275 dDocent_Contig_2896 114 . A G 1151.29 . AB=0.553191;ABP=5.32038;AC=3;AF=0.5;AN=6;AO=52;CIGAR=1X;DP=94;DPB=94;DPRA=0;EPP=115.927;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1640;QR=855;RO=40;RPL=0;RPP=115.927;RPPR=89.8692;RPR=52;RUN=1;SAF=0;SAP=115.927;SAR=52;SRF=0;SRP=89.8692;SRR=40;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:10,21:10:198:21:657:-50.0152,0,-8.60312 0/1:29:17,11:17:408:11:323:-20.8575,0,-28.4683 0/1:33:13,20:13:249:20:660:-49.7791,0,-12.6667 dDocent_Contig_2898 75 . A G 50.2813 . AB=0.120482;ABP=106.849;AC=1;AF=0.166667;AN=6;AO=21;CIGAR=1X;DP=225;DPB=225;DPRA=0;EPP=48.6112;EPPR=445.991;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=721;QR=7127;RO=204;RPL=21;RPP=48.6112;RPPR=445.991;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=204;SRP=445.991;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:73:67,6:67:2327:6:207:0,-3.00723,-190.723 0/0:69:64,5:64:2220:5:164:0,-5.68728,-184.98 0/1:83:73,10:73:2580:10:350:-6.85204,0,-207.467 dDocent_Contig_2899 89 . A G 42.1123 . AB=0.130435;ABP=84.8654;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=186;DPB=186;DPRA=1.17949;EPP=22.5536;EPPR=387.361;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=291;QR=5927;RO=177;RPL=9;RPP=22.5536;RPPR=387.361;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=177;SRP=387.361;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:60,9:60:2020:9:291:-5.73408,0,-161.307 0/0:80:80,0:80:2647:0:0:0,-24.0824,-238.486 0/0:37:37,0:37:1260:0:0:0,-11.1381,-113.703 dDocent_Contig_2900 82 . C A 137.52 . AB=0.428571;ABP=3.63072;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=40;DPB=40;DPRA=1.07692;EPP=16.0391;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=216;QR=1247;RO=34;RPL=6;RPP=16.0391;RPPR=76.8404;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:323:0:0:0,-2.70927,-29.4099 0/1:14:8,6:8:306:6:216:-15.5759,0,-23.6865 0/0:17:17,0:17:618:0:0:0,-5.11751,-55.9539 dDocent_Contig_2901 10 . A G 1732.03 . AB=0.319249;ABP=63.4547;AC=3;AF=0.5;AN=6;AO=68;CIGAR=1X;DP=213;DPB=213;DPRA=0;EPP=150.67;EPPR=317.874;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.985294;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2688;QR=5744;RO=145;RPL=0;RPP=150.67;RPPR=317.874;RPR=68;RUN=1;SAF=68;SAP=150.67;SAR=0;SRF=145;SRP=317.874;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:79:47,32:47:1849:32:1280:-91.6876,0,-142.84 0/1:69:49,20:49:1958:20:776:-49.3894,0,-155.651 0/1:65:49,16:49:1937:16:632:-37.6488,0,-154.967 dDocent_Contig_2902 76 . T C 32.2634 . AB=0.176471;ABP=18.4661;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=77;DPB=77;DPRA=0.566667;EPP=9.52472;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=109;QR=2747;RO=74;RPL=3;RPP=9.52472;RPPR=163.699;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:36:36,0:36:1346:0:0:0,-10.8371,-121.428 0/1:17:14,3:14:543:3:109:-5.04999,0,-44.0985 0/0:24:24,0:24:858:0:0:0,-7.22472,-77.5384 dDocent_Contig_2903 55 . T C 802.989 . AB=0.413333;ABP=7.90335;AC=3;AF=0.5;AN=6;AO=31;CIGAR=1X;DP=75;DPB=75;DPRA=0;EPP=70.3259;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1193;QR=1761;RO=44;RPL=31;RPP=70.3259;RPPR=98.5551;RPR=0;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:14,21:14:551:21:821:-63.6679,0,-39.3976 0/1:15:10,5:10:405:5:180:-12.0308,0,-32.295 0/1:25:20,5:20:805:5:192:-10.123,0,-65.2422 dDocent_Contig_2904 11 . G A 16008.6 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=464;CIGAR=1X;DP=476;DPB=476;DPRA=0;EPP=1010.57;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=18289;QR=487;RO=12;RPL=0;RPP=1010.57;RPPR=29.068;RPR=464;RUN=1;SAF=464;SAP=1010.57;SAR=0;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:161:1,160:1:40:160:6261:-559.285,-44.4702,0 1/1:113:5,108:5:202:108:4222:-361.399,-15.4543,0 1/1:202:6,196:6:245:196:7806:-679.703,-38.3786,0 dDocent_Contig_2905 22 . C A 674.179 . AB=0.419355;ABP=6.51267;AC=2;AF=0.333333;AN=6;AO=29;CIGAR=1X;DP=113;DPB=113;DPRA=0;EPP=65.983;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1098;QR=3285;RO=84;RPL=0;RPP=65.983;RPPR=185.414;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:21,20:21:825:20:752:-55.6511,0,-62.2272 0/1:21:15,6:15:567:6:236:-15.2897,0,-45.0446 0/0:51:48,3:48:1893:3:110:0,-5.09626,-160.328 dDocent_Contig_2906 91 . A G 191.836 . AB=0.289474;ABP=17.6392;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=57;DPB=57;DPRA=1;EPP=26.8965;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=372;QR=1567;RO=46;RPL=11;RPP=26.8965;RPPR=102.898;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:12,6:12:416:6:201:-13.0006,0,-32.3541 0/0:19:19,0:19:653:0:0:0,-5.71957,-59.0915 0/1:20:15,5:15:498:5:171:-9.70585,0,-39.1168 dDocent_Contig_2907 63 . G A 195.819 . AB=0.230769;ABP=35.7494;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=65;DPB=65;DPRA=2;EPP=29.068;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=423;QR=1813;RO=53;RPL=12;RPP=29.068;RPPR=118.098;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:20,6:20:694:6:210:-11.4151,0,-54.9551 0/1:26:20,6:20:660:6:213:-11.6896,0,-51.8829 0/0:13:13,0:13:459:0:0:0,-3.91339,-41.6449 dDocent_Contig_2908 10 . A C 3318 . AB=0.597826;ABP=18.305;AC=3;AF=0.5;AN=6;AO=110;CIGAR=1X;DP=184;DPB=184;DPRA=0;EPP=241.872;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4355;QR=2952;RO=74;RPL=0;RPP=241.872;RPPR=163.699;RPR=110;RUN=1;SAF=110;SAP=241.872;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:26,22:26:1030:22:860:-63.2617,0,-78.5481 0/1:53:20,33:20:799:33:1313:-102.487,0,-56.2734 0/1:83:28,55:28:1123:55:2182:-171.574,0,-76.3702 dDocent_Contig_2910 10 . C T 264.192 . AB=0.178571;ABP=78.3914;AC=1;AF=0.166667;AN=6;AO=21;CIGAR=1X;DP=288;DPB=288;DPRA=0;EPP=48.6112;EPPR=582.793;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.996255;PAO=0;PQA=0;PQR=0;PRO=0;QA=822;QR=10591;RO=267;RPL=0;RPP=48.6112;RPPR=582.793;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=267;SRP=582.793;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:114:110,4:110:4358:4:158:0,-19.7181,-377.597 0/1:84:69,15:69:2700:15:591:-28.2431,0,-217.861 0/0:90:88,2:88:3533:2:73:0,-20.1635,-311.075 dDocent_Contig_2911 155 . G A 39.2136 . AB=0.157895;ABP=22.325;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=92;DPB=92;DPRA=0.520548;EPP=9.52472;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=3422;RO=89;RPL=0;RPP=9.52472;RPPR=196.271;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=196.271;SRR=89;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:38,0:38:1437:0:0:0,-11.4391,-129.588 0/0:35:35,0:35:1356:0:0:0,-10.536,-122.31 0/1:19:16,3:16:629:3:123:-5.74522,0,-51.2241 dDocent_Contig_2912 50 . C A 206.566 . AB=0.212766;ABP=36.6912;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=97;DPB=97;DPRA=1.88;EPP=24.725;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=403;QR=3408;RO=87;RPL=10;RPP=24.725;RPPR=191.928;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:947:0:0:0,-7.22472,-85.5358 0/0:26:26,0:26:1006:0:0:0,-7.82678,-90.8333 0/1:47:37,10:37:1455:10:403:-22.4805,0,-117.05 dDocent_Contig_2913 46 . A G 661.23 . AB=0.341772;ABP=20.1897;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1X4M;DP=79;DPB=79;DPRA=0;EPP=61.6401;EPPR=111.584;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.98;PAO=0;PQA=0;PQR=0;PRO=0;QA=1046;QR=1963;RO=50;RPL=0;RPP=61.6401;RPPR=111.584;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:26:20,0,6:20:774:0,6:0,232:-13.42,-19.4406,-83.0149,0,-63.9606,-62.1544 0|1:25:20,2,3:20:792:2,3:76,123:-4.14948,-3.94895,-68.5221,0,-58.9701,-64.2986 0|1:28:10,0,18:10:397:0,18:0,691:-54.0754,-57.0857,-89.7725,0,-33.0787,-27.6601 dDocent_Contig_2915 24 . G A 2460.61 . AB=0.776699;ABP=71.5066;AC=3;AF=0.5;AN=6;AO=80;CIGAR=1X;DP=103;DPB=103;DPRA=0;EPP=176.728;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3130;QR=856;RO=23;RPL=0;RPP=176.728;RPPR=52.9542;RPR=80;RUN=1;SAF=80;SAP=176.728;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:9,22:9:318:22:874:-69.6417,0,-19.6194 0/1:36:7,29:7:263:29:1114:-89.709,0,-13.1849 0/1:36:7,29:7:275:29:1142:-92.2327,0,-14.2798 dDocent_Contig_2916 31 . T A 146.043 . AB=0.242424;ABP=22.0271;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X;DP=33;DPB=33;DPRA=0;EPP=20.3821;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=321;QR=994;RO=25;RPL=0;RPP=20.3821;RPPR=57.2971;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:11,2:11:439:2:79:-3.58424,0,-35.9513 0/1:11:8,3:8:313:3:123:-8.15346,0,-25.2183 0/1:9:6,3:6:242:3:119:-8.38574,0,-19.4477 dDocent_Contig_2918 68 . C A 979.703 . AB=0.29078;ABP=56.6195;AC=3;AF=0.5;AN=6;AO=41;CIGAR=1X;DP=141;DPB=141;DPRA=0;EPP=92.0407;EPPR=220.158;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1610;QR=3959;RO=100;RPL=41;RPP=92.0407;RPPR=220.158;RPR=0;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:37,10:37:1452:10:391:-21.3989,0,-116.78 0/1:52:39,13:39:1549:13:528:-32.2135,0,-123.995 0/1:42:24,18:24:958:18:691:-49.8807,0,-73.8762 dDocent_Contig_2919 98 . N A 224.417 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=233;QR=0;RO=0;RPL=7;RPP=18.2106;RPPR=0;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:99:-9.23746,-0.90309,0 1/1:2:0,2:0:0:2:66:-6.26831,-0.60206,0 1/1:2:0,2:0:0:2:68:-6.45793,-0.60206,0 dDocent_Contig_2920 98 . N T 66.4848 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 dDocent_Contig_2921 98 . N A 984.189 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=34;CIGAR=1X;DP=34;DPB=34;DPRA=0;EPP=76.8404;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1078;QR=0;RO=0;RPL=34;RPP=76.8404;RPPR=0;RPR=0;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:10:0,10:0:0:10:308:-28.0199,-3.0103,0 1/1:10:0,10:0:0:10:319:-29.0206,-3.0103,0 1/1:14:0,14:0:0:14:451:-40.9013,-4.21442,0 dDocent_Contig_2922 8 . G T 65.5373 . AB=0.235294;ABP=13.3567;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=86;DPB=86;DPRA=0.80303;EPP=16.0391;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=224;QR=2962;RO=80;RPL=0;RPP=16.0391;RPPR=176.728;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1228:0:0:0,-9.93399,-110.819 0/0:36:34,2:34:1255:2:78:0,-3.43361,-105.842 0/1:17:13,4:13:479:4:146:-8.37764,0,-38.33 dDocent_Contig_2923 29 . G A 9457.4 . AB=0.0638298;ABP=158.34;AC=0;AF=0;AN=6;AO=6;CIGAR=6M1X4M1X1M;DP=359;DPB=348.846;DPRA=1.01075;EPP=16.0391;EPPR=60.6867;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.804878;PAO=0;PQA=0;PQR=0;PRO=0;QA=229;QR=1591;RO=41;RPL=0;RPP=16.0391;RPPR=92.0407;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=37;SRP=60.6867;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:94:15,6,0,71:15:592:6,0,71:229,0,2801:-225.982,-211.711,-258.618,-230.498,-260.424,-279.211,0,-29.9546,-48.7434,-27.3703 0|0:172:19,0,10,140:19:732:0,10,140:0,380,5555:-451.586,-457.305,-517.407,-426.142,-486.244,-483.234,0,-60.1242,-28.9562,-17.98 0|0:93:7,0,2,84:7:267:0,2,84:0,79,3289:-271.695,-273.802,-295.704,-267.301,-289.203,-288.601,-3.39446,-25.2865,-18.7826,0 dDocent_Contig_2924 14 . G T 394.64 . AB=0.4375;ABP=4.09604;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=113;DPB=113;DPRA=0.790123;EPP=33.4109;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=562;QR=3885;RO=99;RPL=0;RPP=33.4109;RPPR=217.986;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:48:48,0:48:1879:0:0:0,-14.4494,-169.327 0/0:33:33,0:33:1288:0:0:0,-9.93399,-116.185 0/1:32:18,14:18:718:14:562:-41.2879,0,-55.3102 dDocent_Contig_2925 15 . C A 158.65 . AB=0.169492;ABP=58.9901;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=192;DPB=192;DPRA=0.887218;EPP=24.725;EPPR=398.218;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=390;QR=7365;RO=182;RPL=0;RPP=24.725;RPPR=398.218;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=182;SRP=398.218;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:63:63,0:63:2542:0:0:0,-18.9649,-228.911 0/0:70:70,0:70:2835:0:0:0,-21.0721,-255.242 0/1:59:49,10:49:1988:10:390:-17.6889,0,-161.341 dDocent_Contig_2926 47 . T A 1020.57 . AB=0.590164;ABP=7.31765;AC=3;AF=0.5;AN=6;AO=36;CIGAR=1X;DP=61;DPB=61;DPRA=0;EPP=81.1833;EPPR=48.9587;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1388;QR=999;RO=25;RPL=0;RPP=81.1833;RPPR=48.9587;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:5,6:5:198:6:231:-17.8449,0,-14.8852 0/1:18:9,9:9:357:9:330:-24.6213,0,-27.0734 0/1:32:11,21:11:444:21:827:-65.1139,0,-30.6832 dDocent_Contig_2927 11 . A G 4244.82 . AB=0.764228;ABP=77.5995;AC=4;AF=0.666667;AN=6;AO=133;CIGAR=1X;DP=164;DPB=164;DPRA=0;EPP=291.816;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5245;QR=1260;RO=31;RPL=0;RPP=291.816;RPPR=70.3259;RPR=133;RUN=1;SAF=133;SAP=291.816;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:21,29:21:855:29:1122:-86.2156,0,-62.2085 1/1:41:2,39:2:81:39:1536:-130.797,-4.6565,0 0/1:73:8,65:8:324:65:2587:-210.993,0,-7.55363 dDocent_Contig_2928 124 . T C 1069.43 . AB=0.457143;ABP=4.68544;AC=2;AF=0.333333;AN=6;AO=51;CIGAR=1X;DP=141;DPB=141;DPRA=0;EPP=113.755;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1673;QR=2810;RO=90;RPL=0;RPP=113.755;RPPR=198.443;RPR=51;RUN=1;SAF=0;SAP=113.755;SAR=51;SRF=0;SRP=198.443;SRR=90;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:36:33,3:33:999:3:101:0,-1.41331,-80.7642 0/1:38:25,13:25:759:13:395:-24.4054,0,-57.1566 0/1:67:32,35:32:1052:35:1177:-86.0603,0,-74.8086 dDocent_Contig_2930 15 . G A 868.666 . AB=0.180812;ABP=242.826;AC=3;AF=0.5;AN=6;AO=49;CIGAR=1X;DP=271;DPB=271;DPRA=0;EPP=100.904;EPPR=476.43;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.959184;PAIREDR=0.986486;PAO=0;PQA=0;PQR=0;PRO=0;QA=1922;QR=8728;RO=222;RPL=0;RPP=109.412;RPPR=485.077;RPR=49;RUN=1;SAF=48;SAP=100.904;SAR=1;SRF=221;SRP=476.43;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:93:80,13:80:3121:13:517:-18.8828,0,-252.995 0/1:84:69,15:69:2719:15:589:-28.0605,0,-219.563 0/1:94:73,21:73:2888:21:816:-45.4462,0,-231.726 dDocent_Contig_2931 19 . A T 1773.68 . AB=0.638298;ABP=18.6264;AC=3;AF=0.5;AN=6;AO=60;CIGAR=1X;DP=94;DPB=94;DPRA=0;EPP=133.299;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2335;QR=1343;RO=34;RPL=0;RPP=133.299;RPPR=76.8404;RPR=60;RUN=1;SAF=60;SAP=133.299;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:14,16:14:564:16:638:-48.721,0,-42.0719 0/1:31:3,28:3:122:28:1081:-88.229,0,-2.04056 0/1:33:17,16:17:657:16:616:-45.8259,0,-49.5193 dDocent_Contig_2932 21 . A G 279.733 . AB=0.229508;ABP=41.7764;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=82;DPB=82;DPRA=1.45238;EPP=33.4109;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=546;QR=2730;RO=68;RPL=0;RPP=33.4109;RPPR=150.67;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:23,5:23:920:5:190:-9.03101,0,-74.6764 0/1:33:24,9:24:973:9:356:-22.4652,0,-77.9342 0/0:21:21,0:21:837:0:0:0,-6.32163,-75.6432 dDocent_Contig_2933 54 . G A 287.183 . AB=0.28;ABP=24.0302;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=33.4109;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=515;QR=1333;RO=36;RPL=14;RPP=33.4109;RPPR=81.1833;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:20,11:20:753:11:395:-26.5479,0,-58.7494 0/1:13:12,1:12:443:1:41:-0.181177,0,-36.2916 0/1:6:4,2:4:137:2:79:-5.69106,0,-10.859 dDocent_Contig_2934 13 . T G 858.306 . AB=0.256944;ABP=76.9007;AC=3;AF=0.5;AN=6;AO=37;CIGAR=1X;DP=144;DPB=144;DPRA=0;EPP=83.3548;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1485;QR=4287;RO=107;RPL=0;RPP=83.3548;RPPR=235.358;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:34,6:34:1360:6:244:-10.2976,0,-110.617 0/1:49:32,17:32:1276:17:682:-46.9601,0,-100.359 0/1:55:41,14:41:1651:14:559:-34.0957,0,-132.257 dDocent_Contig_2935 13 . G C 30.8974 . AB=0.116279;ABP=58.0041;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X1M1X;DP=85;DPB=85;DPRA=2.04762;EPP=13.8677;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=191;QR=3129;RO=80;RPL=0;RPP=13.8677;RPPR=176.728;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:43:38,5:38:1499:5:191:-4.61227,0,-122.224 0|0:30:30,0:30:1153:0:0:0,-9.0309,-104.056 0|0:12:12,0:12:477:0:0:0,-3.61236,-43.2816 dDocent_Contig_2936 29 . A G 733.124 . AB=0.380282;ABP=11.8491;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1X;DP=71;DPB=71;DPRA=0;EPP=61.6401;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1081;QR=1773;RO=44;RPL=0;RPP=61.6401;RPPR=98.5551;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:12,1:12:483:1:41:-0.181177,0,-39.9077 0/1:24:13,11:13:519:11:438:-32.5505,0,-39.832 0/1:34:19,15:19:771:15:602:-44.2826,0,-59.4748 dDocent_Contig_2937 13 . G A 294.652 . AB=0.162162;ABP=113.051;AC=1;AF=0.166667;AN=6;AO=25;CIGAR=1X;DP=247;DPB=247;DPRA=0;EPP=57.2971;EPPR=485.077;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=997;QR=8743;RO=222;RPL=0;RPP=57.2971;RPPR=485.077;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=222;SRP=485.077;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:111:93,18:93:3674:18:712:-30.9873,0,-297.289 0/0:75:69,6:69:2684:6:244:0,-0.238424,-219.354 0/0:61:60,1:60:2385:1:41:0,-14.2683,-210.703 dDocent_Contig_2938 170 . C T 30.5899 . AB=0.222222;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=48;DPB=48;DPRA=0.461538;EPP=7.35324;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=1830;RO=46;RPL=2;RPP=7.35324;RPPR=102.898;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=102.898;SRR=46;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:511:0:0:0,-3.91339,-46.333 0/1:9:7,2:7:279:2:80:-4.88252,0,-22.7719 0/0:26:26,0:26:1040:0:0:0,-7.82678,-93.8864 dDocent_Contig_2940 14 . T A 98.9939 . AB=0.152174;ABP=51.3492;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=172;DPB=172;DPRA=0.730159;EPP=18.2106;EPPR=361.303;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=280;QR=6572;RO=165;RPL=0;RPP=18.2106;RPPR=361.303;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=165;SRP=361.303;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:53:53,0:53:2109:0:0:0,-15.9546,-189.998 0/1:46:39,7:39:1551:7:280:-11.7233,0,-125.988 0/0:73:73,0:73:2912:0:0:0,-21.9752,-262.183 dDocent_Contig_2941 36 . T A 119.153 . AB=0;ABP=0;AC=0;AF=0;AN=6;AO=5;CIGAR=1M1X1M;DP=165;DPB=202.333;DPRA=0;EPP=13.8677;EPPR=320.045;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=194;QR=5759;RO=146;RPL=0;RPP=13.8677;RPPR=320.045;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=146;SRP=320.045;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:76:69,5,2:69:2736:5,2:196,78:0,-4.65122,-228.361,-14.36,-223.454,-238.97 0|0:41:33,8,0:33:1299:8,0:286,0:-13.7393,0,-104.843,-23.6732,-107.251,-130.56 0|0:48:44,1,3:44:1724:1,3:37,116:0,-10.2224,-151.678,-3.70604,-142.452,-144.575 dDocent_Contig_2942 10 . T A 5802.58 . AB=0.703008;ABP=98.2285;AC=3;AF=0.5;AN=6;AO=187;CIGAR=1X4M;DP=266;DPB=266;DPRA=0;EPP=409.076;EPPR=155.013;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.989305;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7372;QR=2742;RO=70;RPL=0;RPP=409.076;RPPR=155.013;RPR=187;RUN=1;SAF=187;SAP=409.076;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:81:17,5,59:17:664:5,59:200,2295:-183.434,-172.075,-225.155,0,-38.0996,-36.8162 0|1:89:25,3,60:25:979:3,60:119,2384:-188.751,-186.48,-266.071,0,-70.7057,-62.4406 0|1:96:28,0,68:28:1099:0,68:0,2693:-213.596,-222.025,-312.405,0,-90.7729,-70.3029 dDocent_Contig_2943 14 . G A 44.8444 . AB=0.116667;ABP=79.5909;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=93;DPB=93;DPRA=0;EPP=22.5536;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.988095;PAO=0;PQA=0;PQR=0;PRO=0;QA=362;QR=3300;RO=84;RPL=0;RPP=22.5536;RPPR=185.414;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:30,4:30:1192:4:160:-4.54841,0,-97.3254 0/0:33:31,2:31:1212:2:81:0,-2.24826,-101.67 0/1:26:23,3:23:896:3:121:-3.45342,0,-73.1176 dDocent_Contig_2945 27 . T A 3523.79 . AB=0.582915;ABP=14.8934;AC=3;AF=0.5;AN=6;AO=116;CIGAR=1X;DP=199;DPB=199;DPRA=0;EPP=254.901;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4616;QR=3300;RO=83;RPL=0;RPP=254.901;RPPR=183.243;RPR=116;RUN=1;SAF=116;SAP=254.901;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:73:6,67:6:244:67:2672:-218.638,0,-0.363634 0/1:65:39,26:39:1543:26:1049:-75.1349,0,-119.546 0/1:61:38,23:38:1513:23:895:-62.4886,0,-118.044 dDocent_Contig_2946 96 . C T 37.5792 . AB=0.214286;ABP=12.937;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=51;DPB=51;DPRA=0.916667;EPP=11.6962;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=1614;RO=47;RPL=4;RPP=11.6962;RPPR=105.07;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:614:0:0:0,-5.41854,-55.5816 0/0:19:18,1:18:625:1:35:0,-2.22094,-53.0774 0/1:14:11,3:11:375:3:105:-5.58174,0,-29.8646 dDocent_Contig_2947 1 . N G 306.249 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=26.8965;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=35;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=355;QR=0;RO=0;RPL=0;RPP=26.8965;RPPR=0;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:152:-13.0985,-1.50515,0 ./.:.:.:.:.:.:.:. 1/1:6:0,6:0:0:6:203:-17.2252,-1.80618,0 dDocent_Contig_2948 126 . A G 144.985 . AB=0.177419;ABP=59.0483;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=118;DPB=118;DPRA=2.21429;EPP=26.8965;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=385;QR=3586;RO=107;RPL=0;RPP=26.8965;RPPR=235.358;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=235.358;SRR=107;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:997:0:0:0,-9.33193,-90.0219 0/1:62:51,11:51:1752:11:385:-16.3224,0,-139.302 0/0:25:25,0:25:837:0:0:0,-7.52575,-75.637 dDocent_Contig_2949 96 . T C 141.591 . AB=0.214286;ABP=32.7905;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=112;DPB=112;DPRA=1.2;EPP=22.5536;EPPR=226.672;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=311;QR=3485;RO=103;RPL=9;RPP=22.5536;RPPR=226.672;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:33,9:33:1118:9:311:-15.6819,0,-88.2769 0/0:38:38,0:38:1296:0:0:0,-11.4391,-116.942 0/0:32:32,0:32:1071:0:0:0,-9.63296,-96.6952 dDocent_Contig_2950 18 . C A 73.1658 . AB=0.25;ABP=11.6962;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=34;DPB=34;DPRA=1.77778;EPP=11.6962;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=151;QR=1166;RO=30;RPL=0;RPP=11.6962;RPPR=68.1545;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:267:0:0:0,-2.10721,-24.3892 0/0:11:11,0:11:430:0:0:0,-3.31133,-39.0508 0/1:16:12,4:12:469:4:151:-9.14048,0,-37.7445 dDocent_Contig_2951 174 . A T 125.619 . AB=0.205882;ABP=28.557;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=65;DPB=65;DPRA=0;EPP=22.5536;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=331;QR=2205;RO=56;RPL=9;RPP=22.5536;RPPR=124.613;RPR=0;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=124.613;SRR=56;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:29,2:29:1147:2:48:0,-4.77604,-98.9599 0/1:18:16,2:16:623:2:81:-2.26719,0,-50.9794 0/1:16:11,5:11:435:5:202:-13.7456,0,-34.6852 dDocent_Contig_2952 17 . A C 5434.1 . AB=0.879433;ABP=179.331;AC=4;AF=0.666667;AN=6;AO=176;CIGAR=1X;DP=197;DPB=197;DPRA=0;EPP=385.189;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6705;QR=824;RO=21;RPL=0;RPP=385.189;RPPR=48.6112;RPR=176;RUN=1;SAF=176;SAP=385.189;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:75:7,68:7:279:68:2595:-211.153,0,-2.9039 1/1:56:4,52:4:159:52:1944:-160.488,-2.16535,0 0/1:66:10,56:10:386:56:2166:-175.275,0,-15.226 dDocent_Contig_2953 146 . A G 673.122 . AB=0.433333;ABP=5.32654;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X;DP=60;DPB=60;DPRA=0;EPP=59.4686;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=998;QR=1312;RO=34;RPL=0;RPP=59.4686;RPPR=76.8404;RPR=26;RUN=1;SAF=0;SAP=59.4686;SAR=26;SRF=0;SRP=76.8404;SRR=34;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:12,7:12:466:7:262:-18.2178,0,-36.5684 0/1:31:15,16:15:579:16:619:-46.7174,0,-43.1179 0/1:10:7,3:7:267:3:117:-7.89991,0,-21.3793 dDocent_Contig_2954 13 . T G 87.0456 . AB=0.217391;ABP=18.9659;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=47;DPB=47;DPRA=0.479167;EPP=13.8677;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=1659;RO=42;RPL=0;RPP=13.8677;RPPR=94.2121;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:9,2:9:344:2:81:-4.3744,0,-27.997 0/0:24:24,0:24:958:0:0:0,-7.22472,-86.5194 0/1:12:9,3:9:357:3:123:-7.85243,0,-28.8762 dDocent_Contig_2955 73 . A T 170.468 . AB=0.243902;ABP=26.3669;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=56;DPB=56;DPRA=1.36667;EPP=24.725;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=358;QR=1630;RO=46;RPL=10;RPP=24.725;RPPR=102.898;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:21,7:21:751:7:253:-14.6882,0,-59.4808 0/0:15:15,0:15:520:0:0:0,-4.51545,-47.1197 0/1:13:10,3:10:359:3:105:-5.88139,0,-28.737 dDocent_Contig_2956 19 . C T 34.5014 . AB=0.190476;ABP=20.4855;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=76;DPB=76;DPRA=0.763636;EPP=11.6962;EPPR=140.302;GTI=0;LEN=1;MEANALT=1;MQM=32.25;MQMR=59.9155;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=0.971831;PAO=0;PQA=0;PQR=0;PRO=0;QA=153;QR=2852;RO=71;RPL=0;RPP=11.6962;RPPR=157.185;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=69;SRP=140.302;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:17,4:17:677:4:153:-4.97286,0,-54.9334 0/0:27:26,0:26:1040:0:0:0,-7.82678,-93.8031 0/0:28:28,0:28:1135:0:0:0,-8.42884,-102.428 dDocent_Contig_2962 140 . G A 114.432 . AB=0.24;ABP=17.6895;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=88;DPB=88;DPRA=0.793651;EPP=16.0391;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=227;QR=3128;RO=82;RPL=0;RPP=16.0391;RPPR=181.071;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=181.071;SRR=82;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:615:0:0:0,-4.81648,-55.6895 0/1:25:19,6:19:719:6:227:-13.2671,0,-57.515 0/0:47:47,0:47:1794:0:0:0,-14.1484,-161.712 dDocent_Contig_2964 59 . A G 137.049 . AB=0.315789;ABP=8.61041;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=55;DPB=55;DPRA=1.46429;EPP=18.2106;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=270;QR=1861;RO=48;RPL=7;RPP=18.2106;RPPR=107.241;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:535:0:0:0,-4.21442,-48.4879 0/0:22:21,1:21:817:1:38:0,-2.82539,-70.0518 0/1:19:13,6:13:509:6:232:-15.5288,0,-40.4358 dDocent_Contig_2965 106 . N G 65.5375 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=2X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 .:.:.:.:.:.:.:. dDocent_Contig_2966 10 . T C 282.231 . AB=0.155738;ABP=128.6;AC=2;AF=0.333333;AN=6;AO=25;CIGAR=1X;DP=197;DPB=197;DPRA=0;EPP=57.2971;EPPR=365.697;GTI=0;LEN=1;MEANALT=1.33333;MQM=58.92;MQMR=59.9708;NS=3;NUMALT=1;ODDS=0;PAIRED=0.96;PAIREDR=0.976608;PAO=0;PQA=0;PQR=0;PRO=0;QA=1003;QR=6842;RO=171;RPL=0;RPP=57.2971;RPPR=374.332;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=170;SRP=365.697;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:64,7:64:2550:7:279:-3.54394,0,-208.264 0/1:51:38,12:38:1527:12:478:-28.1967,0,-122.512 0/0:75:69,6:69:2765:6:246:0,-0.0571297,-226.44 dDocent_Contig_2967 22 . G C 2883.52 . AB=0.565789;ABP=5.8675;AC=4;AF=0.666667;AN=6;AO=87;CIGAR=1X;DP=120;DPB=120;DPRA=0;EPP=191.928;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3488;QR=1295;RO=33;RPL=0;RPP=191.928;RPPR=74.6689;RPR=87;RUN=1;SAF=87;SAP=191.928;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:9,19:9:361:19:751:-59.4835,0,-24.4247 0/1:48:24,24:24:934:24:970:-73.1495,0,-69.9154 1/1:44:0,44:0:0:44:1767:-159.242,-13.2453,0 dDocent_Contig_2968 98 . N G 142.911 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=144;QR=0;RO=0;RPL=5;RPP=13.8677;RPPR=0;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:49:-4.65463,-0.60206,0 1/1:1:0,1:0:0:1:27:-2.69978,-0.30103,0 1/1:2:0,2:0:0:2:68:-6.45788,-0.60206,0 dDocent_Contig_2969 112 . A C 458.962 . AB=0.387097;ABP=9.87495;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=62;DPB=62;DPRA=0;EPP=55.1256;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=768;QR=1276;RO=38;RPL=0;RPP=55.1256;RPPR=85.5263;RPR=24;RUN=1;SAF=0;SAP=55.1256;SAR=24;SRF=0;SRP=85.5263;SRR=38;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:19,6:19:640:6:208:-11.5338,0,-50.3909 0/1:20:8,12:8:257:12:352:-25.9432,0,-17.4235 0/1:17:11,6:11:379:6:208:-13.9421,0,-29.3243 dDocent_Contig_2970 52 . C A 317.323 . AB=0.444444;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=80;DPB=80;DPRA=1.01887;EPP=29.068;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=456;QR=2722;RO=68;RPL=12;RPP=29.068;RPPR=150.67;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:15,12:15:596:12:456:-33.2551,0,-45.8521 0/0:22:22,0:22:884:0:0:0,-6.62266,-79.8675 0/0:31:31,0:31:1242:0:0:0,-9.33193,-112.052 dDocent_Contig_2971 50 . A G 3128.3 . AB=0.731884;ABP=67.4621;AC=3;AF=0.5;AN=6;AO=101;CIGAR=1X;DP=138;DPB=138;DPRA=0;EPP=222.329;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3990;QR=1446;RO=37;RPL=101;RPP=222.329;RPPR=83.3548;RPR=0;RUN=1;SAF=101;SAP=222.329;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:5,35:5:190:35:1372:-111.695,0,-5.42381 0/1:61:15,46:15:580:46:1810:-144.76,0,-34.1751 0/1:37:17,20:17:676:20:808:-61.8976,0,-50.0321 dDocent_Contig_2972 15 . C G 436.1 . AB=0.253165;ABP=44.818;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=1X;DP=122;DPB=122;DPRA=0.918605;EPP=46.4397;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.931373;PAO=0;PQA=0;PQR=0;PRO=0;QA=780;QR=4026;RO=102;RPL=0;RPP=46.4397;RPPR=224.5;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:25,12:25:988:12:459:-30.5185,0,-78.0828 0/0:43:43,0:43:1691:0:0:0,-12.9443,-152.428 0/1:42:34,8:34:1347:8:321:-16.6144,0,-108.853 dDocent_Contig_2973 63 . A T 359.199 . AB=0.253968;ABP=36.1339;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X1M1X;DP=164;DPB=164;DPRA=1.24752;EPP=37.7539;EPPR=324.388;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=623;QR=5710;RO=148;RPL=16;RPP=37.7539;RPPR=324.388;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=148;SRP=324.388;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:63:47,16:47:1810:16:623:-37.4428,0,-144.164 0|0:50:50,0:50:1924:0:0:0,-15.0515,-173.377 0|0:51:51,0:51:1976:0:0:0,-15.3525,-178.052 dDocent_Contig_2974 98 . T G 706.04 . AB=0.0361011;ABP=520.785;AC=0;AF=0;AN=6;AO=10;CIGAR=1X3M;DP=277;DPB=304.75;DPRA=0;EPP=16.9077;EPPR=38.0233;GTI=0;LEN=1;MEANALT=9.33333;MQM=19.8;MQMR=37.7007;NS=3;NUMALT=5;ODDS=5.55112e-17;PAIRED=0.3;PAIREDR=0.591241;PAO=8;PQA=280;PQR=492.633;PRO=17.5333;QA=198;QR=5088;RO=137;RPL=10;RPP=24.725;RPPR=300.502;RPR=0;RUN=1;SAF=1;SAP=16.9077;SAR=9;SRF=45;SRP=38.0233;SRR=92;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:73:36,5,3,8,1,11:36:1295:5,3,8,1,11:197,120,306,20,439:-13.0639,-13.8014,-91.0151,-14.8262,-83.4479,-92.649,0,-68.6273,-69.6587,-76.3235,-22.6746,-91.2921,-92.3238,-77.5035,-101.095,-6.34562,-74.9426,-75.9728,-61.1525,-83.8171,-81.7336 0|0:81:42,0,1,9,5,16:42:1590:0,1,9,5,16:0,41,357,142,599:-19.4911,-32.1344,-140.781,-31.4503,-140.095,-139.794,-5.00417,-113.668,-112.982,-110.959,-22.2065,-130.852,-130.166,-103.739,-129.347,0,-108.64,-107.954,-81.5264,-98.7127,-103.823 0|0:123:59,1,7,6,4,33:59:2203:1,7,6,4,33:40,279,204,36,1325:-43.5717,-58.2601,-195.528,-41.9416,-176.445,-177.409,-46.0763,-180.578,-164.264,-181.843,-60.2889,-194.782,-178.469,-182.602,-196.649,0,-134.507,-118.193,-122.327,-136.534,-127.645 dDocent_Contig_2975 34 . A G 146.354 . AB=0.0740741;ABP=45.5551;AC=0;AF=0;AN=6;AO=2;CIGAR=1X1M1X1M;DP=54;DPB=54;DPRA=0;EPP=7.35324;EPPR=76.8404;GTI=0;LEN=1;MEANALT=4;MQM=19;MQMR=22.6471;NS=3;NUMALT=4;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.735294;PAO=0;PQA=0;PQR=0;PRO=0;QA=38;QR=1333;RO=34;RPL=0;RPP=7.35324;RPPR=76.8404;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:20:13,0,1,5,0:13:505:0,1,5,0:0,40,199,0:-11.2308,-15.1442,-32.9904,-12.1115,-29.9555,-29.6545,0,-17.8706,-14.8303,-16.3655,-15.1442,-32.9904,-29.9555,-17.8706,-32.9904 0|0:27:16,2,2,6,0:16:630:2,2,6,0:38,80,245,0:-5.92225,-8.47353,-33.9088,-4.65182,-28.4422,-30.1169,0,-23.7713,-19.9741,-24.24,-10.7387,-34.5109,-30.719,-26.0462,-36.787 0|0:7:5,0,0,0,2:5:198:0,0,0,2:0,0,0,82:-2.99064,-4.49579,-15.1685,-4.49579,-15.1685,-15.1685,-4.49579,-15.1685,-15.1685,-15.1685,0,-10.9417,-10.9417,-10.9417,-10.3396 dDocent_Contig_2976 13 . C T 1003.27 . AB=0.20625;ABP=122.93;AC=1;AF=0.166667;AN=6;AO=33;CIGAR=1X1M2X;DP=160;DPB=160;DPRA=0;EPP=74.6689;EPPR=168.042;GTI=0;LEN=1;MEANALT=3.66667;MQM=53.5455;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1237;QR=2981;RO=76;RPL=0;RPP=74.6689;RPPR=168.042;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:55:22,3,11,15,4:22:860:3,11,15,4:107,410,600,162:-42.8118,-40.9505,-110.752,-15.9686,-78.1866,-83.3598,0,-62.2277,-37.2439,-66.1971,-36.0736,-98.2952,-73.3116,-57.3519,-105.576 0|1:37:24,2,10,0,1:24:939:2,10,0,1:54,367,0,39:-22.6418,-26.1691,-102.787,0,-73.5873,-74.2826,-29.8665,-103.389,-77.2929,-107.098,-26.6571,-100.183,-74.0867,-103.892,-103.591 0|0:68:30,2,12,9,15:30:1182:2,12,9,15:80,460,368,600:-40.3967,-42.8393,-139.479,-11.7768,-102.426,-105.402,-19.0561,-109.711,-78.6447,-113.59,0,-90.6539,-59.5884,-66.8716,-92.7269 dDocent_Contig_2977 15 . C A 68.1749 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X2M1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:76:-6.81641,-0.60206,0 .:.:.:.:.:.:.:. dDocent_Contig_2978 98 . N A 306.418 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=10;CIGAR=2X;DP=10;DPB=60.5;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=58;PQA=1560;PQR=0;PRO=0;QA=337;QR=0;RO=0;RPL=10;RPP=24.725;RPPR=0;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,3:0:0:3:104:-9.36615,-0.90309,0 1|1:7:0,7:0:0:7:233:-20.9743,-2.10721,0 .:.:.:.:.:.:.:. dDocent_Contig_2980 114 . G T 248.886 . AB=0.188235;ABP=74.7711;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X1M1X3M;DP=125;DPB=125;DPRA=1.0625;EPP=37.7539;EPPR=196.271;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=536;QR=2906;RO=89;RPL=0;RPP=37.7539;RPPR=196.271;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=196.271;SRR=89;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:39:19,9,9,0:19:612:9,9,0:296,285,0:-18.2176,0,-46.6518,-0.998869,-26.4251,-47.6443,-23.9372,-49.3611,-50.3536,-73.2881 0|1:46:31,7,5,3:31:973:7,5,3:240,166,75:-10.1796,0,-76.1284,-6.07137,-64.8015,-82.7882,-14.7323,-73.4391,-79.4967,-92.0257 0|0:40:39,0,0,0:39:1321:0,0,0:0,0,0:0,-11.7402,-118.995,-11.7402,-118.995,-118.995,-11.7402,-118.995,-118.995,-118.995 dDocent_Contig_2981 7 . A T 344.193 . AB=0.181818;ABP=70.7208;AC=2;AF=0.333334;AN=6;AO=14;CIGAR=1X3M1X3M1X8M2X8M;DP=77;DPB=73.6296;DPRA=0;EPP=33.4109;EPPR=100.727;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.928571;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=526;QR=1699;RO=45;RPL=0;RPP=33.4109;RPPR=100.727;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:20:13,4,2,0:13:484:4,2,0:154,70,0:-8.79878,0,-38.4984,-7.01151,-34.0086,-46.0583,-12.7122,-39.7026,-46.6603,-52.3537 0|0:17:10,1,2,3:10:376:1,2,3:36,76,117:-6.61054,-6.68768,-37.1836,-3.39021,-31.2519,-33.5858,0,-27.865,-24.5678,-29.8979 0|1:40:22,7,10,0:22:839:7,10,0:274,380,0:-24.5328,-8.62133,-75.3413,0,-46.2874,-65.8094,-31.1554,-77.4485,-68.8197,-99.9803 dDocent_Contig_2982 14 . A G 1378.92 . AB=0.128962;ABP=1097.15;AC=3;AF=0.5;AN=6;AO=118;CIGAR=1X;DP=915;DPB=915;DPRA=0;EPP=259.244;EPPR=1718.48;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=59.8804;NS=3;NUMALT=1;ODDS=0;PAIRED=0.974576;PAIREDR=0.989924;PAO=0;PQA=0;PQR=0;PRO=0;QA=4645;QR=31585;RO=794;RPL=0;RPP=259.244;RPPR=1727.16;RPR=118;RUN=1;SAF=118;SAP=259.244;SAR=0;SRF=793;SRP=1718.48;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:513:467,46:467:18590:46:1789:-6.79938,0,-1514.5 0/1:226:187,38:187:7435:38:1481:-65.4007,0,-600.66 0/1:176:140,34:140:5560:34:1375:-71.2144,0,-447.431 dDocent_Contig_2984 132 . G T 251.832 . AB=0.351351;ABP=10.1116;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=51;DPB=51;DPRA=1.32143;EPP=31.2394;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=427;QR=1316;RO=38;RPL=0;RPP=31.2394;RPPR=85.5263;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=85.5263;SRR=38;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:17,12:17:593:12:390:-26.6787,0,-44.9634 0/0:14:14,0:14:498:0:0:0,-4.21442,-45.154 0/1:8:7,1:7:225:1:37:-1.28959,0,-18.1527 dDocent_Contig_2985 8 . C T 85.2108 . AB=0.307692;ABP=7.18621;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X1M1X;DP=46;DPB=46;DPRA=0.787879;EPP=11.6962;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=151;QR=1616;RO=42;RPL=0;RPP=11.6962;RPPR=94.2121;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:13:9,4:9:341:4:151:-10.044,0,-27.132 0|0:14:14,0:14:537:0:0:0,-4.21442,-48.6752 0|0:19:19,0:19:738:0:0:0,-5.71957,-66.7512 dDocent_Contig_2986 16 . A T 4421.29 . AB=0.0381862;ABP=779.19;AC=5;AF=0.833334;AN=6;AO=16;CIGAR=3X6M1X;DP=419;DPB=419;DPRA=0;EPP=37.7539;EPPR=81.1833;GTI=0;LEN=1;MEANALT=19;MQM=60;MQMR=60;NS=3;NUMALT=6;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=495;QR=1413;RO=36;RPL=0;RPP=37.7539;RPPR=81.1833;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:162:12,6,44,22,12,17,9:12:473:6,44,22,12,17,9:217,1533,756,401,626,248:-143.208,-129.538,-166.652,-22.4652,-44.1051,-48.1416,-85.4335,-107.072,0,-117.731,-114.38,-136.018,-28.947,-91.9141,-149.687,-95.9433,-117.582,-10.509,-73.4772,-102.424,-129.746,-127.22,-148.858,-41.7876,-104.754,-133.7,-115.263,-163.43 1|1:123:5,13,54,3,8,2,3:5:198:13,54,3,8,2,3:462,1846,104,280,75,109:-167.892,-132.676,-145.063,-20.4199,0,-20.4654,-160.944,-140.523,-28.2677,-176.34,-146.622,-126.201,-13.9453,-154.468,-160.513,-163.254,-142.833,-30.5773,-171.1,-156.778,-178.951,-160.495,-140.074,-27.8183,-168.341,-154.019,-170.651,-175.891 0|1:134:19,6,50,14,7,4,4:19:742:6,50,14,7,4,4:199,1749,556,244,143,138:-136.552,-126.603,-185.798,0,-45.3393,-45.9559,-96.495,-141.83,-15.2282,-153.284,-122.427,-167.76,-41.1629,-137.654,-181.322,-130.611,-175.944,-49.3469,-145.838,-171.769,-190.409,-131.06,-176.393,-49.796,-146.287,-172.218,-180.402,-190.858 dDocent_Contig_2987 85 . C A 396.72 . AB=0.0714286;ABP=47.6806;AC=0;AF=0;AN=6;AO=2;CIGAR=1M2I9M1X3M;DP=53;DPB=54.4286;DPRA=0;EPP=7.35324;EPPR=68.1545;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10;QR=996;RO=30;RPL=2;RPP=7.35324;RPPR=68.1545;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:28:16,2,0,0,9:16:531:2,0,0,9:10,0,0,311:-20.6757,-25.2385,-67.6058,-25.4922,-68.2079,-68.4861,-25.4922,-68.2079,-68.4861,-68.4861,0,-42.9268,-43.1968,-43.1968,-40.4876 0|0:13:9,0,0,3,1:9:297:0,0,3,1:0,0,103,35:-5.64934,-8.35861,-32.3614,-8.35861,-32.3614,-32.3614,0,-23.9952,-23.9952,-23.0921,-5.50921,-29.5124,-29.5124,-21.1455,-29.2114 0|0:12:5,0,7,0,0:5:168:0,7,0,0:0,246,0,0:-18.8698,-20.375,-33.9788,0,-13.9461,-11.8389,-20.375,-33.9788,-13.9461,-33.9788,-20.375,-33.9788,-13.9461,-33.9788,-33.9788 dDocent_Contig_2988 106 . N G 110.979 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=2X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:4:0,4:0:0:4:120:-11.0976,-1.20412,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_2989 128 . T C 124.665 . AB=0.269231;ABP=15.0369;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=111;DPB=111;DPRA=0.611765;EPP=18.2106;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=3635;RO=104;RPL=0;RPP=18.2106;RPPR=228.843;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=228.843;SRR=104;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:46:46,0:46:1613:0:0:0,-13.8474,-145.459 0/1:26:19,7:19:672:7:242:-14.2904,0,-52.9806 0/0:39:39,0:39:1350:0:0:0,-11.7402,-121.792 dDocent_Contig_2990 96 . G T 107.045 . AB=0.272727;ABP=12.8806;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=68;DPB=68;DPRA=0.956522;EPP=16.0391;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=209;QR=2118;RO=61;RPL=6;RPP=16.0391;RPPR=135.47;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:16,0:16:556:0:0:0,-4.81648,-50.2729 0/1:22:16,6:16:555:6:209:-12.5284,0,-43.6556 0/0:29:29,0:29:1007:0:0:0,-8.72987,-90.9434 dDocent_Contig_2991 81 . C T 2531.63 . AB=0.686131;ABP=44.2366;AC=3;AF=0.5;AN=6;AO=94;CIGAR=1X;DP=137;DPB=137;DPRA=0;EPP=207.129;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3322;QR=1525;RO=43;RPL=94;RPP=207.129;RPPR=96.3836;RPR=0;RUN=1;SAF=94;SAP=207.129;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:11,45:11:387:45:1598:-127.254,0,-18.3092 0/1:47:28,19:28:996:19:673:-46.7491,0,-75.8067 0/1:34:4,30:4:142:30:1051:-84.6646,0,-2.89419 dDocent_Contig_2992 7 . A C 554.097 . AB=0.444444;ABP=4.45795;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X3M;DP=54;DPB=54;DPRA=0;EPP=55.1256;EPPR=48.6112;GTI=0;LEN=1;MEANALT=2;MQM=45.9167;MQMR=60;NS=3;NUMALT=3;ODDS=6.93889e-18;PAIRED=0.958333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=772;QR=809;RO=21;RPL=0;RPP=55.1256;RPPR=48.6112;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:7,0,0,16:7:271:0,0,16:0,0,514:-38.8155,-40.9227,-63.2067,-40.9227,-63.2067,-63.2067,0,-22.6491,-22.6491,-17.8326 0|1:14:8,0,3,2:8:305:0,3,2:0,112,44:-6.80733,-9.21557,-34.2755,0,-25.1137,-24.2106,-6.16287,-31.1935,-22.0386,-30.5915 0|1:17:6,5,0,6:6:233:5,0,6:188,0,214:-15.3076,-1.85506,-19.5145,-17.1138,-21.0197,-36.2694,0,-3.9127,-19.1545,-17.3483 dDocent_Contig_2993 61 . T G 51.7199 . AB=0.214286;ABP=12.937;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=48;DPB=48;DPRA=0.823529;EPP=9.52472;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=1784;RO=45;RPL=3;RPP=9.52472;RPPR=100.727;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:11,3:11:442:3:117:-6.69487,0,-35.9214 0/0:12:12,0:12:471:0:0:0,-3.61236,-42.7372 0/0:22:22,0:22:871:0:0:0,-6.62266,-78.6987 dDocent_Contig_2995 24 . G A 154.318 . AB=0.144737;ABP=86.3263;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=190;DPB=190;DPRA=1.08333;EPP=31.2394;EPPR=387.361;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=517;QR=7010;RO=177;RPL=0;RPP=31.2394;RPPR=387.361;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=177;SRP=387.361;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:54:52,2:52:2059:2:75:0,-9.13603,-178.384 0/0:60:60,0:60:2363:0:0:0,-18.0618,-212.84 0/1:76:65,11:65:2588:11:442:-17.2557,0,-210.162 dDocent_Contig_2996 116 . A C 126.769 . AB=0.28;ABP=13.5202;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=123;DPB=123;DPRA=0.510204;EPP=18.2106;EPPR=254.901;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=4010;RO=116;RPL=0;RPP=18.2106;RPPR=254.901;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=254.901;SRR=116;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:46:46,0:46:1587:0:0:0,-13.8474,-143.115 0/0:52:52,0:52:1803:0:0:0,-15.6536,-162.549 0/1:25:18,7:18:620:7:241:-14.5008,0,-48.5939 dDocent_Contig_2997 107 . N G 69.0676 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=74;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:74:-6.90622,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_2998 90 . A G 293.91 . AB=0.341463;ABP=11.961;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=66;DPB=66;DPRA=3.28;EPP=33.4109;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=477;QR=1749;RO=52;RPL=14;RPP=33.4109;RPPR=115.927;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:27,14:27:920:14:477:-30.9139,0,-70.7698 0/0:14:14,0:14:479:0:0:0,-4.21442,-43.4366 0/0:11:11,0:11:350:0:0:0,-3.31133,-31.807 dDocent_Contig_2999 15 . G T 2623.8 . AB=0.0794702;ABP=234.955;AC=0;AF=0;AN=6;AO=12;CIGAR=1X3M1X4M;DP=151;DPB=151;DPRA=0;EPP=29.068;EPPR=50.7827;GTI=0;LEN=1;MEANALT=5.33333;MQM=57.75;MQMR=60;NS=3;NUMALT=6;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=468;QR=840;RO=22;RPL=0;RPP=29.068;RPPR=50.7827;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:76:14,9,7,0,0,6,37:14:531:9,7,0,0,6,37:348,262,0,0,75,1446:-114.435,-90.1145,-130.951,-97.192,-112.203,-138.629,-118.649,-133.66,-140.737,-162.193,-118.649,-133.66,-140.737,-162.193,-162.193,-114.885,-129.894,-136.97,-158.424,-158.424,-156.618,0,-15.0211,-22.103,-43.5677,-43.5677,-39.8176,-32.4295 0|0:46:6,2,0,3,1,5,29:6:234:2,0,3,1,5,29:80,0,111,40,167,1128:-90.6322,-85.847,-104.482,-92.4383,-105.084,-111.675,-84.1671,-96.8122,-103.403,-102.5,-89.1449,-101.79,-108.382,-100.11,-108.08,-79.4252,-92.0698,-98.6607,-90.3901,-95.3676,-97.1556,0,-12.6543,-19.2493,-10.98,-15.9542,-6.24522,-10.5195 0|0:29:2,1,2,0,2,4,17:2:75:1,2,0,2,4,17:40,59,0,77,161,683:-62.8359,-60.1425,-65.9837,-59.0116,-61.8579,-64.551,-63.438,-66.2847,-65.1531,-69.5802,-57.1467,-59.9933,-58.8623,-63.2888,-62.6867,-50.1672,-53.0138,-51.8835,-56.3094,-50.0179,-55.1053,-7.13996,-9.98623,-8.867,-13.2838,-6.98974,0,-8.16632 dDocent_Contig_3000 31 . C A 186.591 . AB=0.123188;ABP=173.203;AC=0;AF=0;AN=6;AO=21;CIGAR=5M1X3M;DP=199;DPB=193.778;DPRA=0;EPP=48.6112;EPPR=280.959;GTI=0;LEN=1;MEANALT=4.33333;MQM=27.2381;MQMR=59.8047;NS=3;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=0.929688;PAO=0;PQA=0;PQR=0;PRO=0;QA=562;QR=5018;RO=128;RPL=0;RPP=48.6112;RPPR=280.959;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=128;SRP=280.959;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:80:46,0,0,7,12,13:46:1795:0,0,7,12,13:0,0,274,360,328:-11.7512,-25.5986,-173.235,-25.5986,-173.235,-173.235,-15.1508,-162.788,-162.788,-160.681,0,-147.662,-147.662,-137.219,-144.05,-3.28202,-150.928,-150.928,-140.486,-125.362,-147.014 0|0:58:32,5,3,1,12,4:32:1257:5,3,1,12,4:90,63,40,299,102:-10.4306,-14.8218,-116.253,-16.1073,-113.807,-118.143,-18.5688,-116.266,-117.553,-121.205,0,-97.7342,-99.0184,-101.476,-99.3554,-13.1654,-110.871,-112.158,-114.617,-96.0828,-114.906 0|0:61:50,0,3,0,4,4:50:1966:0,3,0,4,4:0,90,0,110,132:0,-15.0515,-176.857,-8.66747,-170.477,-169.574,-15.0515,-176.857,-170.477,-176.857,-7.45277,-169.252,-162.873,-169.252,-168.048,-5.44275,-167.269,-160.89,-167.269,-159.665,-166.065 dDocent_Contig_3002 107 . N C 65.5375 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_3003 9 . T C 43705.9 . AB=0.786105;ABP=1302.71;AC=3;AF=0.5;AN=6;AO=1437;CIGAR=1X;DP=1828;DPB=1828;DPRA=0;EPP=3114.74;EPPR=695.71;GTI=0;LEN=1;MEANALT=2.33333;MQM=59.3159;MQMR=59.8903;NS=3;NUMALT=1;ODDS=1.11022e-16;PAIRED=0.910926;PAIREDR=0.962382;PAO=0;PQA=0;PQR=0;PRO=0;QA=54604;QR=12149;RO=319;RPL=0;RPP=3123.42;RPPR=695.71;RPR=1437;RUN=1;SAF=1436;SAP=3114.74;SAR=1;SRF=319;SRP=695.71;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:736:136,565:136:5176:565:21378:-1710.19,0,-254.468 0/1:498:101,377:101:3812:377:14240:-1133.18,0,-198.738 0/1:594:82,495:82:3161:495:18986:-1532.75,0,-110.568 dDocent_Contig_3005 8 . C A 62.3758 . AB=0.134615;ABP=63.3104;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=75;DPB=75;DPRA=1.13043;EPP=18.2106;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.1176;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.808824;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=2576;RO=68;RPL=0;RPP=18.2106;RPPR=150.67;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:26,3:26:987:3:117:-2.18051,0,-80.2566 0/1:23:19,4:19:715:4:156:-7.4936,0,-56.4064 0/0:23:23,0:23:874:0:0:0,-6.92369,-77.8412 dDocent_Contig_3006 22 . T G 1075.62 . AB=0.606557;ABP=9.02635;AC=2;AF=0.333333;AN=6;AO=37;CIGAR=1X;DP=89;DPB=89;DPRA=1.08929;EPP=83.3548;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1431;QR=2023;RO=52;RPL=0;RPP=83.3548;RPPR=115.927;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:13,26:13:498:26:995:-78.1123,0,-33.422 0/1:22:11,11:11:402:11:436:-32.9723,0,-29.8868 0/0:28:28,0:28:1123:0:0:0,-8.42884,-101.355 dDocent_Contig_3008 63 . C T 1491.53 . AB=0.259146;ABP=168.281;AC=3;AF=0.5;AN=6;AO=85;CIGAR=1X;DP=328;DPB=328;DPRA=0;EPP=187.585;EPPR=530.678;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2806;QR=9000;RO=243;RPL=85;RPP=187.585;RPPR=530.678;RPR=0;RUN=1;SAF=85;SAP=187.585;SAR=0;SRF=243;SRP=530.678;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:133:108,25:108:3951:25:835:-35.4144,0,-315.675 0/1:105:74,31:74:2753:31:1045:-62.7303,0,-216.358 0/1:90:61,29:61:2296:29:926:-56.5313,0,-179.766 dDocent_Contig_3009 17 . C T 1572.09 . AB=0.693333;ABP=27.3597;AC=3;AF=0.5;AN=6;AO=52;CIGAR=1X;DP=75;DPB=75;DPRA=0;EPP=115.927;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.521739;PAO=0;PQA=0;PQR=0;PRO=0;QA=2048;QR=918;RO=23;RPL=0;RPP=115.927;RPPR=52.9542;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:11,19:11:439:19:752:-58.9684,0,-30.8352 0/1:13:6,7:6:237:7:284:-22.02,0,-17.7899 0/1:32:6,26:6:242:26:1012:-81.7439,0,-12.5244 dDocent_Contig_3010 20 . A C 190.961 . AB=0.285714;ABP=14.1779;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=84;DPB=84;DPRA=0;EPP=26.8965;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.890411;PAO=0;PQA=0;PQR=0;PRO=0;QA=437;QR=2919;RO=73;RPL=0;RPP=26.8965;RPPR=161.528;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:43:41,2:41:1630:2:79:0,-5.44705,-139.437 0/1:28:20,8:20:804:8:322:-20.9193,0,-64.2493 0/0:13:12,1:12:485:1:36:0,-0.315115,-40.4032 dDocent_Contig_3011 32 . C T 190.138 . AB=0.154762;ABP=89.9726;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=133;DPB=133;DPRA=0.857143;EPP=31.2394;EPPR=263.587;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.983333;PAO=0;PQA=0;PQR=0;PRO=0;QA=524;QR=4775;RO=120;RPL=0;RPP=31.2394;RPPR=263.587;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:51,5:51:2048:5:204:-1.88635,0,-167.651 0/1:28:20,8:20:809:8:320:-20.7385,0,-64.6976 0/0:49:49,0:49:1918:0:0:0,-14.7505,-172.821 dDocent_Contig_3012 10 . A T 424.795 . AB=0.192308;ABP=24.391;AC=0;AF=0;AN=6;AO=5;CIGAR=1X1M1X3M3X3M1X2M1X;DP=85;DPB=85;DPRA=0;EPP=13.8677;EPPR=131.127;GTI=0;LEN=1;MEANALT=2;MQM=21;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=2290;RO=59;RPL=0;RPP=13.8677;RPPR=131.127;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:35:25,0,9:25:975:0,9:0,363:-22.678,-30.2037,-110.359,0,-80.4307,-77.7215 0|0:26:16,5,5:16:612:5,5:197,187:-10.5745,-7.55631,-56.2756,0,-42.4739,-48.8445 0|0:24:18,0,6:18:703:0,6:0,240:-14.7498,-20.1684,-77.9521,0,-58.1809,-56.3747 dDocent_Contig_3015 11 . T G 96.1733 . AB=0.110294;ABP=182.412;AC=1;AF=0.166667;AN=6;AO=26;CIGAR=1X;DP=332;DPB=332;DPRA=0;EPP=59.4686;EPPR=624.761;GTI=0;LEN=1;MEANALT=1;MQM=56.3462;MQMR=59.1405;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.973856;PAO=0;PQA=0;PQR=0;PRO=0;QA=999;QR=11975;RO=306;RPL=0;RPP=59.4686;RPPR=667.481;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=301;SRP=624.761;SRR=5;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:136:121,15:121:4708:15:576:-11.1402,0,-381.498 0/0:100:93,7:93:3630:7:264:0,-6.03868,-294.933 0/0:96:92,4:92:3637:4:159:0,-14.2623,-312.734 dDocent_Contig_3017 50 . C A 266.014 . AB=0.205479;ABP=58.011;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=122;DPB=122;DPRA=0;EPP=39.9253;EPPR=231.015;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=648;QR=4099;RO=105;RPL=17;RPP=39.9253;RPPR=231.015;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:49:47,2:47:1803:2:77:0,-7.44164,-155.185 0/1:50:41,9:41:1614:9:344:-16.2626,0,-130.449 0/1:23:17,6:17:682:6:227:-13.8617,0,-54.7865 dDocent_Contig_3018 41 . C A 52.6329 . AB=0.2;ABP=18.6449;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=27;DPB=27;DPRA=1.42857;EPP=11.6962;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=916;RO=23;RPL=0;RPP=11.6962;RPPR=52.9542;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:8,2:8:324:2:75:-4.10929,0,-26.5191 0/0:7:7,0:7:268:0:0:0,-2.10721,-24.481 0/1:10:8,2:8:324:2:81:-4.67543,0,-26.5189 dDocent_Contig_3019 99 . N C 1940.11 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=80;CIGAR=2X;DP=84;DPB=469.5;DPRA=0;EPP=121.247;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=36.125;MQMR=0;NS=3;NUMALT=2;ODDS=0;PAIRED=0.15;PAIREDR=0;PAO=726;PQA=21849;PQR=0;PRO=0;QA=2657;QR=0;RO=0;RPL=80;RPP=176.728;RPPR=0;RPR=0;RUN=1;SAF=73;SAP=121.247;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:26:0,1,24:0:0:1,24:31,778:-58.3242,-55.8357,-55.5346,-7.22472,-4.73617,0 1|1:26:0,2,24:0:0:2,24:65,821:-56.6546,-53.6999,-53.0978,-7.22472,-4.27009,0 1|1:32:0,0,32:0:0:0,32:0,1058:-78.5546,-78.5546,-78.5546,-9.63296,-9.63296,0 dDocent_Contig_3020 12 . G A 24781 . AB=0.555853;ABP=43.5188;AC=3;AF=0.5;AN=6;AO=831;CIGAR=1X;DP=1495;DPB=1495;DPRA=0;EPP=1807.5;EPPR=1321.49;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.9807;MQMR=59.8701;NS=3;NUMALT=1;ODDS=0;PAIRED=0.797834;PAIREDR=0.791541;PAO=0;PQA=0;PQR=0;PRO=0;QA=32614;QR=25405;RO=662;RPL=0;RPP=1807.5;RPPR=1440.53;RPR=831;RUN=1;SAF=831;SAP=1807.5;SAR=0;SRF=648;SRP=1321.49;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:597:284,313:284:10728:313:12310:-927.448,0,-784.723 0/1:453:208,243:208:8024:243:9471:-715.799,0,-585.431 0/1:445:170,275:170:6653:275:10833:-840.374,0,-464.565 dDocent_Contig_3022 22 . C A 236.35 . AB=0.193548;ABP=53.5846;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=111;DPB=111;DPRA=1.08571;EPP=31.2394;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=524;QR=3898;RO=98;RPL=0;RPP=31.2394;RPPR=215.815;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:50,12:50:1984:12:483:-25.1568,0,-160.09 0/0:14:13,1:13:521:1:41:0,-0.119853,-43.1423 0/0:35:35,0:35:1393:0:0:0,-10.536,-125.628 dDocent_Contig_3023 17 . G C 305.187 . AB=0.122924;ABP=374.751;AC=3;AF=0.5;AN=6;AO=37;CIGAR=1X;DP=301;DPB=301;DPRA=0;EPP=83.3548;EPPR=514.925;GTI=0;LEN=1;MEANALT=1.33333;MQM=47.973;MQMR=58.7909;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=0;PAIREDR=0.338403;PAO=0;PQA=0;PQR=0;PRO=0;QA=1472;QR=10332;RO=263;RPL=0;RPP=83.3548;RPPR=574.108;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=256;SRP=514.925;SRR=7;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:145:131,14:131:5136:14:560:-0.347205,0,-416.612 0/1:96:83,13:83:3281:13:511:-15.8395,0,-266.343 0/1:60:49,10:49:1915:10:401:-18.1989,0,-152.467 dDocent_Contig_3024 8 . C T 1235.07 . AB=0.0784314;ABP=81.7368;AC=0;AF=0;AN=6;AO=4;CIGAR=3X;DP=146;DPB=146;DPRA=0;EPP=11.6962;EPPR=200.614;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=3496;RO=91;RPL=0;RPP=11.6962;RPPR=200.614;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:41:21,0,20:21:807:0,20:0,773:-57.5527,-63.8743,-130.123,0,-66.634,-60.6134 0|0:51:30,4,15:30:1138:4,15:154,566:-37.3475,-33.7326,-125.837,0,-80.6562,-88.7861 0|0:54:40,0,14:40:1551:0,14:0,556:-34.1299,-46.1711,-173.593,0,-127.816,-123.602 dDocent_Contig_3025 38 . C T 118.735 . AB=0.416667;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=33;DPB=33;DPRA=1.14286;EPP=13.8677;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.964286;PAO=0;PQA=0;PQR=0;PRO=0;QA=185;QR=1106;RO=28;RPL=0;RPP=13.8677;RPPR=63.8115;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:7,5:7:286:5:185:-13.3964,0,-22.5025 0/0:10:10,0:10:389:0:0:0,-3.0103,-35.3646 0/0:11:11,0:11:431:0:0:0,-3.31133,-39.1395 dDocent_Contig_3026 1 . N G 395.559 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=26.8965;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=58;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=423;QR=0;RO=0;RPL=0;RPP=26.8965;RPPR=0;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:145:-13.4031,-1.20412,0 1/1:3:0,3:0:0:3:115:-10.725,-0.90309,0 1/1:4:0,4:0:0:4:163:-14.9503,-1.20412,0 dDocent_Contig_3027 8 . C T 39.1985 . AB=0.104478;ABP=185.09;AC=1;AF=0.166667;AN=6;AO=31;CIGAR=1X;DP=380;DPB=380;DPRA=0;EPP=70.3259;EPPR=760.854;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.0544;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.962751;PAO=0;PQA=0;PQR=0;PRO=0;QA=1140;QR=13335;RO=349;RPL=0;RPP=70.3259;RPPR=760.854;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=349;SRP=760.854;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:134:120,14:120:4567:14:505:-5.44268,0,-366.185 0/0:89:85,4:85:3237:4:150:0,-12.9259,-276.558 0/0:157:144,13:144:5531:13:485:0,-3.27059,-453.041 dDocent_Contig_3028 9 . G A 1662.71 . AB=0.575758;ABP=7.94546;AC=3;AF=0.5;AN=6;AO=57;CIGAR=2X;DP=99;DPB=99;DPRA=0;EPP=126.784;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2229;QR=1616;RO=42;RPL=0;RPP=126.784;RPPR=94.2121;RPR=57;RUN=1;SAF=57;SAP=126.784;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:31:13,18:13:506:18:698:-53.8206,0,-36.5543 0|1:38:17,21:17:651:21:823:-62.9522,0,-47.4867 0|1:30:12,18:12:459:18:708:-55.021,0,-32.6271 dDocent_Contig_3030 115 . C T 110.096 . AB=0.195122;ABP=36.112;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=152;DPB=152;DPRA=0;EPP=26.8965;EPPR=309.188;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=371;QR=4821;RO=141;RPL=0;RPP=26.8965;RPPR=309.188;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=309.188;SRR=141;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:76:75,1:75:2561:1:25:0,-20.3784,-228.25 0/0:35:33,2:33:1140:2:70:0,-3.88865,-96.2606 0/1:41:33,8:33:1120:8:276:-12.8335,0,-88.7608 dDocent_Contig_3032 20 . G T 278.072 . 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AB=0.168539;ABP=87.9417;AC=3;AF=0.5;AN=6;AO=15;CIGAR=3M1X;DP=89;DPB=89;DPRA=0;EPP=35.5824;EPPR=146.327;GTI=0;LEN=1;MEANALT=1.66667;MQM=52.8;MQMR=59.0303;NS=3;NUMALT=3;ODDS=6.93889e-18;PAIRED=0.733333;PAIREDR=0.939394;PAO=0;PQA=0;PQR=0;PRO=0;QA=581;QR=2517;RO=66;RPL=0;RPP=35.5824;RPPR=146.327;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:45:34,6,0,5:34:1283:6,0,5:241,0,198:-9.66048,0,-103.022,-19.8955,-104.828,-124.691,-6.34742,-91.255,-111.118,-109.613 0|1:17:10,0,2,5:10:379:0,2,5:0,80,193:-12.8283,-15.8386,-46.9045,-9.24445,-40.3121,-39.7101,0,-31.0549,-24.4613,-29.5498 0|1:27:22,0,0,5:22:855:0,0,5:0,0,190:-9.33302,-15.9557,-86.2218,-15.9557,-86.2218,-86.2218,0,-70.6474,-70.6474,-69.1422 dDocent_Contig_3038 31 . T G 1519.48 . 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T A 1236.5 . 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C A 240.7 . AB=0.0668605;ABP=563.578;AC=1;AF=0.166667;AN=6;AO=23;CIGAR=1M1X1M;DP=530;DPB=539.667;DPRA=0.924731;EPP=52.9542;EPPR=984.516;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=878;QR=17063;RO=452;RPL=0;RPP=52.9542;RPPR=984.516;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=452;SRP=984.516;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:164:138,14,2,3:138:5173:14,2,3:535,76,111:-2.37155,0,-419.507,-37.6799,-417.488,-460.785,-34.8329,-414.641,-452.307,-457.637 0|1:180:135,5,21,19:135:5038:5,21,19:187,802,711:-25.1638,-50.4908,-461.452,0,-397.157,-406.148,-7.58042,-404.733,-354.245,-414.325 0|0:186:179,7,0,0:179:6852:7,0,0:273,0,0:0,-31.0536,-591.642,-53.8844,-593.749,-616.191,-53.8844,-593.749,-616.191,-616.191 dDocent_Contig_3044 15 . G T 2154.85 . 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N G 193.617 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:121:-11.2802,-0.90309,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 dDocent_Contig_3072 10 . T A 65.6462 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1M3D3M1X1M1X;DP=2;DPB=1.4;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=72;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:72:-6.56353,-0.60206,0 dDocent_Contig_3073 107 . N C 5652.89 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=199;CIGAR=1X;DP=199;DPB=199;DPRA=0;EPP=435.133;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=6267;QR=0;RO=0;RPL=0;RPP=435.133;RPPR=0;RPR=199;RUN=1;SAF=0;SAP=435.133;SAR=199;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:38:0,38:0:0:38:1165:-105.134,-11.4391,0 1/1:58:0,58:0:0:58:1734:-156.324,-17.4597,0 1/1:103:0,103:0:0:103:3368:-303.354,-31.0061,0 dDocent_Contig_3080 9 . A T 7983.41 . AB=0.0518072;ABP=1451.19;AC=6;AF=1;AN=6;AO=43;CIGAR=1X10M;DP=830;DPB=830.818;DPRA=0;EPP=96.3836;EPPR=42.0968;GTI=0;LEN=1;MEANALT=23.3333;MQM=17.3721;MQMR=26.2222;NS=3;NUMALT=8;ODDS=0;PAIRED=0;PAIREDR=0;PAO=1;PQA=0;PQR=0;PRO=1;QA=738;QR=579;RO=18;RPL=0;RPP=96.3836;RPPR=42.0968;RPR=43;RUN=1;SAF=0;SAP=96.3836;SAR=43;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:233:9,7,20,53,12,78,10,2,9:9:288:7,20,53,12,78,10,2,9:267,427,1533,178,1928,352,18,179:-227.162,-223.171,-238.536,-202.475,-213.248,-213.927,-113.638,-124.411,-103.714,-115.157,-220.222,-230.994,-210.299,-121.462,-234.081,-98.7744,-109.549,-88.853,0,-106.601,-92.7672,-203.685,-214.458,-193.762,-104.923,-211.508,-90.0595,-218.148,-229.345,-240.117,-219.422,-130.586,-237.168,-115.723,-220.632,-246.215,-218.886,-229.658,-208.962,-120.125,-226.709,-105.263,-210.173,-235.832,-233.649 1|1:242:1,31,9,47,13,67,13,15,17:1:32:31,9,47,13,67,13,15,17:1188,237,1662,155,1844,300,295,284:-260.225,-231.595,-224.215,-243.128,-216.149,-242.371,-127.371,-100.39,-111.923,-115.174,-253.687,-226.71,-238.241,-122.483,-251.725,-131.22,-104.246,-115.773,0,-126.336,-113.003,-240.604,-213.625,-225.158,-109.399,-235.717,-113.25,-238.642,-241.933,-214.955,-226.486,-110.728,-237.046,-114.579,-223.962,-239.369,-244.396,-217.419,-228.95,-113.192,-239.51,-117.044,-226.426,-227.755,-241.23 1|1:355:8,8,14,40,17,148,18,16,17:8:259:8,14,40,17,148,18,16,17:315,336,858,238,3972,337,149,275:-316.477,-311.224,-324.722,-296.585,-304.83,-308.277,-262.485,-270.73,-256.091,-266.35,-306.918,-315.164,-300.525,-266.425,-317.707,-40.4968,-48.7438,-34.1031,0,-44.4396,-11.8524,-298.532,-306.778,-292.139,-258.039,-302.473,-36.0519,-309.02,-314.061,-322.306,-307.667,-273.568,-318.001,-51.5833,-309.615,-325.15,-303.744,-311.989,-297.351,-263.251,-307.684,-41.2647,-299.298,-314.827,-314.533 dDocent_Contig_3081 11 . G A 10882.3 . AB=0.122351;ABP=1815.33;AC=1;AF=0.166667;AN=6;AO=179;CIGAR=1X1M1X;DP=1463;DPB=1463;DPRA=0;EPP=391.704;EPPR=357.029;GTI=0;LEN=1;MEANALT=13.3333;MQM=24.1229;MQMR=29.7316;NS=3;NUMALT=3;ODDS=0;PAIRED=0.486034;PAIREDR=0.326316;PAO=0;PQA=0;PQR=0;PRO=0;QA=6990;QR=7369;RO=190;RPL=0;RPP=391.704;RPPR=415.59;RPR=179;RUN=1;SAF=179;SAP=391.704;SAR=0;SRF=183;SRP=357.029;SRR=7;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:427:59,58,43,234:59:2279:58,43,234:2244,798,5132:-290.195,-229.956,-358.478,-278.746,-346.731,-411.781,0,-68.0175,-116.817,-75.5677 0|0:396:58,40,41,213:58:2231:40,41,213:1561,568,4653:-263.126,-217.852,-307.292,-252.016,-290.764,-341.153,0,-38.7563,-72.9354,-37.3734 1|0:640:73,81,42,354:73:2859:81,42,354:3185,503,8670:-540.434,-414.55,-526.987,-540.153,-529.115,-664.329,-11.0393,0,-125.626,-41.3092 dDocent_Contig_3082 24 . A T 1258.47 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=118;CIGAR=1X;DP=123;DPB=123;DPRA=0;EPP=259.244;EPPR=13.8677;GTI=0;LEN=1;MEANALT=1;MQM=12.3305;MQMR=6;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=4179;QR=177;RO=5;RPL=0;RPP=259.244;RPPR=13.8677;RPR=118;RUN=1;SAF=0;SAP=259.244;SAR=118;SRF=0;SRP=13.8677;SRR=5;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:18:3,15:3:105:15:530:-17.2261,-3.73971,0 1/1:24:2,22:2:72:22:754:-18.6943,-6.08533,0 1/1:81:0,81:0:0:81:2895:-89.4496,-24.3834,0 dDocent_Contig_3083 3 . T C 1278.74 . AB=0.125;ABP=12.7819;AC=0;AF=0;AN=6;AO=1;CIGAR=1X1M1X2M;DP=90;DPB=94.6;DPRA=0;EPP=5.18177;EPPR=0;GTI=0;LEN=1;MEANALT=4;MQM=19;MQMR=0;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0;PAO=3.75;PQA=126.5;PQR=131.167;PRO=4.08333;QA=19;QR=0;RO=0;RPL=0;RPP=5.18177;RPPR=0;RPR=1;RUN=1;SAF=0;SAP=5.18177;SAR=1;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:29:0,0,11,17,0:0:0:0,11,17,0:0,369,397,0:-45.7748,-45.7748,-45.7748,-26.7204,-26.7204,-23.4091,-19.1642,-19.1642,0,-14.0467,-45.7748,-45.7748,-26.7204,-19.1642,-45.7748 0|0:8:0,1,1,4,2:0:0:1,1,4,2:19,16,84,40:-7.6255,-6.4928,-6.19177,-6.60106,-5.47124,-6.30003,-2.3806,-1.26987,-1.38039,-1.17648,-5.1804,-4.05379,-4.16274,0,-4.57834 0|0:53:0,0,17,34,0:0:0:0,17,34,0:0,585,778,0:-79.1502,-79.1502,-79.1502,-51.0988,-51.0988,-45.9813,-28.0426,-28.0426,0,-17.8076,-79.1502,-79.1502,-51.0988,-28.0426,-79.1502 dDocent_Contig_3084 20 . A G 1074.49 . AB=0.342657;ABP=33.7602;AC=1;AF=0.166667;AN=6;AO=49;CIGAR=3M1X;DP=143;DPB=143;DPRA=0;EPP=109.412;EPPR=96.3836;GTI=0;LEN=1;MEANALT=4;MQM=24.4898;MQMR=32.3488;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1671;QR=1449;RO=43;RPL=0;RPP=109.412;RPPR=96.3836;RPR=49;RUN=1;SAF=0;SAP=109.412;SAR=49;SRF=0;SRP=96.3836;SRR=43;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:31:3,3,16,7:3:93:3,16,7:95,518,246:-54.4535,-51.2105,-56.5531,-13.823,-15.9336,-15.2551,-35.3351,-37.4375,0,-39.4764 0|0:29:11,0,13,3:11:369:0,13,3:0,414,104:-28.8861,-32.1974,-55.8,0,-23.613,-19.6996,-23.7553,-47.3607,-15.1633,-46.4577 0|0:83:29,0,14,39:29:987:0,14,39:0,472,1321:-29.5717,-38.3016,-110.35,0,-72.0776,-67.8632,-0.344233,-72.3356,-34.0748,-60.5955 dDocent_Contig_3085 25 . A C 251.584 . AB=0.205882;ABP=28.557;AC=2;AF=0.333334;AN=6;AO=8;CIGAR=1X3M;DP=51;DPB=51;DPRA=0;EPP=20.3821;EPPR=72.4974;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=304;QR=1263;RO=32;RPL=0;RPP=20.3821;RPPR=72.4974;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:25:10,9,6:10:392:9,6:360,225:-26.6599,0,-29.537,-11.2514,-13.8238,-41.6767 0|1:9:7,1,1:7:271:1,1:34,38:-1.02922,-0.398358,-22.3658,0,-19.5512,-22.0023 0|0:17:15,1,1:15:600:1,1:40,41:0,-1.22531,-50.3397,-1.12642,-47.2561,-50.2501 dDocent_Contig_3086 31 . A C 599.01 . AB=0.298851;ABP=33.5856;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X;DP=87;DPB=87;DPRA=0;EPP=59.4686;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1006;QR=2397;RO=61;RPL=0;RPP=59.4686;RPPR=135.47;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:22,14:22:857:14:526:-36.8288,0,-66.6039 0/1:27:22,5:22:861:5:197:-9.97622,0,-69.6769 0/1:24:17,7:17:679:7:283:-18.6189,0,-54.2138 dDocent_Contig_3087 22 . T C 1268.75 . AB=0.173913;ABP=130.466;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X3M;DP=138;DPB=138;DPRA=0;EPP=55.1256;EPPR=146.327;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=959;QR=2571;RO=66;RPL=0;RPP=55.1256;RPPR=146.327;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:43:14,18,8:14:538:18,8:681,318:-51.6072,0,-38.7496,-29.6325,-17.9784,-71.3918 0|1:47:27,17,3:27:1054:17,3:646,114:-44.8456,0,-81.5276,-43.6244,-77.2971,-129.363 0|1:48:25,9,13:25:979:9,13:344,527:-35.9446,-15.255,-93.0244,0,-52.2711,-76.5793 dDocent_Contig_3088 144 . G C 314.532 . AB=0.433333;ABP=4.16842;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=38;DPB=38;DPRA=1.875;EPP=31.2394;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.846154;PAIREDR=0.88;PAO=0;PQA=0;PQR=0;PRO=0;QA=481;QR=915;RO=25;RPL=13;RPP=31.2394;RPPR=57.2971;RPR=0;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:8,11:8:288:11:407:-31.2587,0,-20.5463 0/0:8:8,0:8:296:0:0:0,-2.40824,-26.9942 0/1:11:9,2:9:331:2:74:-3.71455,0,-26.8294 dDocent_Contig_3089 1 . N A 632.343 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=26;CIGAR=1X;DP=26;DPB=26;DPRA=0;EPP=59.4686;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=31;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=860;QR=0;RO=0;RPL=0;RPP=59.4686;RPPR=0;RPR=26;RUN=1;SAF=0;SAP=59.4686;SAR=26;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:7:0,7:0:0:7:239:-13.7614,-2.10721,0 1/1:1:0,1:0:0:1:35:-3.47877,-0.30103,0 1/1:18:0,18:0:0:18:586:-45.5162,-5.41854,0 dDocent_Contig_3090 15 . C T 1971.16 . AB=0.0625;ABP=747.825;AC=0;AF=0;AN=6;AO=28;CIGAR=1X3M1X3M;DP=448;DPB=448;DPRA=0;EPP=63.8115;EPPR=55.1256;GTI=0;LEN=1;MEANALT=8;MQM=8.89286;MQMR=35.75;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=249;QR=920;RO=24;RPL=0;RPP=63.8115;RPPR=55.1256;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:75:6,5,18,37:6:230:5,18,37:42,711,581:-30.6414,-31.3802,-47.4882,-14.4165,-30.9708,-26.6158,-0.359535,-16.9323,0,-6.84753 0|0:112:12,7,19,64:12:453:7,19,64:63,735,893:-42.3443,-44.1182,-76.5816,-23.3459,-56.085,-52.2015,0,-32.7727,-12.0248,-15.3227 0|0:261:6,16,58,168:6:237:16,58,168:144,2294,1922:-129.594,-127.188,-132.923,-72.5623,-78.9029,-65.6556,-48.2799,-54.6358,0,-8.26192 dDocent_Contig_3091 1 . N A 1338.5 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=118;CIGAR=1X;DP=120;DPB=120;DPRA=0;EPP=259.244;EPPR=0;GTI=0;LEN=1;MEANALT=1.33333;MQM=13.0254;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=4034;QR=0;RO=0;RPL=0;RPP=259.244;RPPR=0;RPR=118;RUN=1;SAF=0;SAP=259.244;SAR=118;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:15:0,15:0:0:15:519:-15.2735,-4.51545,0 1/1:7:0,7:0:0:7:206:-11.8264,-2.10721,0 1/1:98:0,96:0:0:96:3309:-106.273,-28.8989,0 dDocent_Contig_3093 98 . N G 21242.6 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=907;CIGAR=1X;DP=909;DPB=909;DPRA=0;EPP=97.8201;EPPR=0;GTI=0;LEN=1;MEANALT=1.66667;MQM=33.1775;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.325248;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=29119;QR=0;RO=0;RPL=907;RPP=1972.54;RPPR=0;RPR=0;RUN=1;SAF=354;SAP=97.8201;SAR=553;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:293:0,292:0:0:292:9367:-669.372,-87.9008,0 1/1:219:0,218:0:0:218:7008:-457.42,-65.6245,0 1/1:397:0,397:0:0:397:12744:-996.99,-119.509,0 dDocent_Contig_3097 9 . C T 47.7935 . AB=0.131579;ABP=47.8112;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=94;DPB=94;DPRA=1.35714;EPP=13.8677;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=3390;RO=89;RPL=0;RPP=13.8677;RPPR=196.271;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:33,5:33:1259:5:193:-6.30222,0,-102.164 0/0:28:28,0:28:1042:0:0:0,-8.42884,-94.0853 0/0:28:28,0:28:1089:0:0:0,-8.42884,-98.3138 dDocent_Contig_3098 8 . T C 989.919 . AB=0.263566;ABP=65.6463;AC=4;AF=0.666667;AN=6;AO=34;CIGAR=4X4M2X2M2X6M;DP=129;DPB=130.1;DPRA=0;EPP=76.8404;EPPR=70.3259;GTI=0;LEN=1;MEANALT=7;MQM=40;MQMR=60;NS=3;NUMALT=8;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0.666667;PQA=25.7778;PQR=25.7778;PRO=0.666667;QA=1283;QR=1193;RO=31;RPL=0;RPP=76.8404;RPPR=70.3259;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:57:10,5,10,0,1,8,0,0,20:10:383:5,10,0,1,8,0,0,20:194,368,0,10,295,0,0,755:-55.1454,-42.3427,-72.2752,-28.098,-43.7234,-56.5257,-58.1557,-73.7803,-59.536,-89.5924,-57.8139,-73.4379,-59.1942,-89.2495,-88.9485,-34.0499,-49.6751,-35.4308,-65.4875,-65.1455,-63.0793,-58.1557,-73.7803,-59.536,-89.5924,-89.2495,-65.4875,-89.5924,-58.1557,-73.7803,-59.536,-89.5924,-89.2495,-65.4875,-89.5924,-89.5924,0,-15.6255,-1.38268,-31.4381,-31.0983,-7.33394,-31.4381,-31.4381,-25.4175 1|1:33:3,7,3,2,0,5,2,0,10:3:113:7,3,2,0,5,2,0,10:264,115,75,0,187,76,0,380:-40.4585,-19.918,-27.0714,-31.9215,-19.7383,-40.279,-35.2179,-23.0349,-35.0383,-43.8763,-41.3616,-29.1786,-41.1821,-44.4783,-50.622,-26.0683,-13.8853,-25.8886,-29.1851,-35.3288,-33.8236,-35.1282,-22.9451,-34.9486,-38.2449,-44.3886,-29.0953,-43.7866,-41.3616,-29.1786,-41.1821,-44.4783,-50.622,-35.3288,-44.3886,-50.622,-12.1811,0,-12.0013,-15.2976,-21.4407,-6.14924,-15.2078,-21.4407,-18.4304 0|1:39:18,4,1,0,2,4,1,5,4:18:697:4,1,0,2,4,1,5,4:158,39,0,79,152,40,190,148:-8.89758,-1.43349,-57.4887,-11.1145,-55.4914,-68.0715,-14.3161,-58.6929,-68.3725,-71.5739,-7.81373,-52.1912,-61.871,-65.0724,-64.4703,-1.86377,-46.2406,-55.9203,-59.1217,-52.6201,-57.9176,-11.0201,-55.3973,-65.077,-68.2784,-61.7769,-55.8262,-67.9774,0,-44.3728,-54.0521,-57.2534,-50.752,-44.8019,-53.958,-55.7482,-2.92314,-47.2968,-56.9762,-60.1775,-53.6761,-47.7259,-56.8821,-45.8582,-58.9734 dDocent_Contig_3099 17 . C G 41.0291 . AB=0.157895;ABP=22.325;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=51;DPB=51;DPRA=1.1875;EPP=9.52472;EPPR=105.07;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.957447;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1847;RO=47;RPL=0;RPP=9.52472;RPPR=105.07;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:15,3:15:571:3:121:-5.62573,0,-46.1166 0/0:26:26,0:26:1031:0:0:0,-7.82678,-93.0866 0/0:6:6,0:6:245:0:0:0,-1.80618,-22.4295 dDocent_Contig_3100 98 . N A 221.461 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=230;QR=0;RO=0;RPL=7;RPP=18.2106;RPPR=0;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:105:-9.79616,-0.90309,0 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 1/1:2:0,2:0:0:2:56:-5.31924,-0.60206,0 dDocent_Contig_3101 107 . N T 102.592 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0.333333;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=103;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:68:-6.45788,-0.60206,0 dDocent_Contig_3103 31 . G T 37.3374 . AB=0.1875;ABP=16.582;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=35;DPB=35;DPRA=1.68421;EPP=9.52472;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=108;QR=1262;RO=32;RPL=0;RPP=9.52472;RPPR=72.4974;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:13,3:13:509:3:108:-5.25653,0,-41.3387 0/0:9:9,0:9:345:0:0:0,-2.70927,-31.4054 0/0:10:10,0:10:408:0:0:0,-3.0103,-37.0806 dDocent_Contig_3104 28 . G A 58.5176 . AB=0.166667;ABP=26.1727;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=54;DPB=54;DPRA=1.6;EPP=11.6962;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=1959;RO=50;RPL=0;RPP=11.6962;RPPR=111.584;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:20,4:20:777:4:158:-7.37464,0,-63.0214 0/0:10:10,0:10:388:0:0:0,-3.0103,-35.2749 0/0:20:20,0:20:794:0:0:0,-6.0206,-71.7729 dDocent_Contig_3105 42 . T G 279.586 . AB=0.220588;ABP=49.1222;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1M1I1X;DP=68;DPB=75.5;DPRA=0;EPP=35.5824;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=587;QR=1885;RO=53;RPL=0;RPP=35.5824;RPPR=118.098;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:34:27,7:27:920:7:275:-14.8832,0,-72.861 0|1:17:13,4:13:480:4:156:-9.29869,0,-38.4234 0|1:17:13,4:13:485:4:156:-9.29961,0,-38.8735 dDocent_Contig_3106 46 . A T 1936.18 . AB=0.0824742;ABP=149.887;AC=0;AF=0;AN=6;AO=8;CIGAR=1X3M1X;DP=128;DPB=128;DPRA=0;EPP=4.09604;EPPR=120.27;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=288;QR=2062;RO=54;RPL=5;RPP=4.09604;RPPR=120.27;RPR=3;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:49:26,5,18:26:1000:5,18:170,721:-51.6184,-45.6743,-126.253,0,-68.3539,-76.7122 0|0:31:19,0,12:19:711:0,12:0,476:-33.8558,-39.5754,-97.7777,0,-58.5899,-54.9776 0|0:48:9,3,36:9:351:3,36:118,1415:-113.667,-106.67,-134.618,0,-19.1426,-18.013 dDocent_Contig_3107 16 . G A 706.723 . AB=0.341772;ABP=20.1897;AC=2;AF=0.333333;AN=6;AO=28;CIGAR=1X;DP=103;DPB=103;DPRA=0;EPP=63.8115;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1121;QR=2940;RO=75;RPL=0;RPP=63.8115;RPPR=165.871;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:23,1:23:920:1:40:0,-3.22904,-79.1094 0/1:44:21,23:21:799:23:923:-70.1297,0,-58.9791 0/1:35:31,4:31:1221:4:158:-4.06422,0,-99.6266 dDocent_Contig_3108 10 . A G 36.4431 . AB=0.157895;ABP=22.325;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=58;DPB=58;DPRA=0.974359;EPP=9.52472;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=2174;RO=55;RPL=0;RPP=9.52472;RPPR=122.441;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:906:0:0:0,-6.92369,-81.8491 0/1:19:16,3:16:641:3:120:-5.46812,0,-52.3064 0/0:16:16,0:16:627:0:0:0,-4.81648,-56.7642 dDocent_Contig_3109 10 . T A 2638.34 . AB=0.567742;ABP=9.18849;AC=3;AF=0.5;AN=6;AO=88;CIGAR=1X;DP=155;DPB=155;DPRA=0;EPP=194.1;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3502;QR=2615;RO=67;RPL=0;RPP=194.1;RPPR=148.499;RPR=88;RUN=1;SAF=88;SAP=194.1;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:44,20:44:1723:20:809:-53.8607,0,-136.035 0/1:35:16,19:16:621:19:744:-56.7461,0,-45.683 0/1:56:7,49:7:271:49:1949:-158.75,0,-7.89554 dDocent_Contig_3110 13 . G T 242.354 . AB=0.20339;ABP=48.096;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=170;DPB=170;DPRA=0;EPP=33.4109;EPPR=341.76;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=565;QR=6164;RO=156;RPL=0;RPP=33.4109;RPPR=341.76;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=156;SRP=341.76;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:66:65,1:65:2545:1:41:0,-15.7734,-225.102 0/0:45:44,1:44:1757:1:41:0,-9.45178,-154.253 0/1:59:47,12:47:1862:12:483:-26.0593,0,-150.03 dDocent_Contig_3111 33 . C G 1282.16 . AB=0.380645;ABP=22.1893;AC=3;AF=0.5;AN=6;AO=59;CIGAR=1X;DP=155;DPB=155;DPRA=0;EPP=131.127;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=59.8644;MQMR=58.2708;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1994;QR=3190;RO=96;RPL=0;RPP=131.127;RPPR=211.472;RPR=59;RUN=1;SAF=0;SAP=131.127;SAR=59;SRF=0;SRP=211.472;SRR=96;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:33,15:33:1082:15:510:-31.7697,0,-83.2104 0/1:47:31,16:31:1025:16:518:-32.7788,0,-78.3777 0/1:60:32,28:32:1083:28:966:-69.1905,0,-79.6054 dDocent_Contig_3113 111 . C T 204.278 . AB=0.158273;ABP=144;AC=2;AF=0.333333;AN=6;AO=24;CIGAR=1X;DP=198;DPB=198;DPRA=0;EPP=55.1256;EPPR=380.846;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=775;QR=5882;RO=174;RPL=0;RPP=55.1256;RPPR=380.846;RPR=24;RUN=1;SAF=0;SAP=55.1256;SAR=24;SRF=0;SRP=380.846;SRR=174;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:97:79,18:79:2654:18:565:-21.9478,0,-209.913 0/0:59:57,2:57:1919:2:70:0,-11.1134,-166.342 0/1:42:38,4:38:1309:4:140:-0.301669,0,-105.469 dDocent_Contig_3114 44 . G A 239.982 . AB=0.277778;ABP=18.4519;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=68;DPB=68;DPRA=1.76667;EPP=26.8965;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=439;QR=2241;RO=57;RPL=0;RPP=26.8965;RPPR=126.784;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:26,10:26:1032:10:400:-25.521,0,-82.3379 0/0:15:15,0:15:575:0:0:0,-4.51545,-52.076 0/0:17:16,1:16:634:1:39:0,-1.22095,-53.4992 dDocent_Contig_3115 31 . T A 251.894 . AB=0.184211;ABP=68.8402;AC=1;AF=0.166667;AN=6;AO=18;CIGAR=1X;DP=191;DPB=191;DPRA=1.01587;EPP=42.0968;EPPR=376.504;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=708;QR=6814;RO=172;RPL=0;RPP=42.0968;RPPR=376.504;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=172;SRP=376.504;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:76:61,14:61:2409:14:545:-26.7119,0,-194.304 0/0:52:48,4:48:1915:4:163:0,-0.595132,-157.495 0/0:63:63,0:63:2490:0:0:0,-18.9649,-224.242 dDocent_Contig_3116 22 . C T 856.731 . AB=0.20283;ABP=165.625;AC=3;AF=0.5;AN=6;AO=43;CIGAR=1X;DP=212;DPB=212;DPRA=0;EPP=96.3836;EPPR=369.989;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1711;QR=6736;RO=169;RPL=0;RPP=96.3836;RPPR=369.989;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=169;SRP=369.989;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:45,6:45:1812:6:237:-6.35047,0,-147.936 0/1:82:62,20:62:2455:20:796:-47.2758,0,-196.404 0/1:79:62,17:62:2469:17:678:-37.5698,0,-198.575 dDocent_Contig_3117 99 . N G 124.383 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=11;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=12.6832;EPPR=0;GTI=0;LEN=1;MEANALT=1.5;MQM=16.6364;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0.181818;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=364;QR=0;RO=0;RPL=11;RPP=26.8965;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=12.6832;SAR=9;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:199:-8.15223,-1.80618,0 ./.:.:.:.:.:.:.:. 1/1:6:0,5:0:0:5:165:-3.98486,-1.50515,0 dDocent_Contig_3119 22 . G A 15977 . 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A T 2387.03 . 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T C 327.123 . AB=0.361111;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=111;DPB=111;DPRA=0.96;EPP=31.2394;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.979592;PAO=0;PQA=0;PQR=0;PRO=0;QA=497;QR=3887;RO=98;RPL=13;RPP=31.2394;RPPR=215.815;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:23,13:23:914:13:497:-34.2352,0,-71.7301 0/0:37:37,0:37:1462:0:0:0,-11.1381,-131.826 0/0:38:38,0:38:1511:0:0:0,-11.4391,-136.229 dDocent_Contig_3128 26 . A C 314.181 . 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AB=0.259259;ABP=43.7857;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X;DP=81;DPB=81;DPRA=0;EPP=48.6112;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=721;QR=1844;RO=60;RPL=21;RPP=48.6112;RPPR=133.299;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:12,12:12:384:12:412:-30.1853,0,-27.6456 0/1:22:18,4:18:517:4:136:-5.9532,0,-40.1814 0/1:35:30,5:30:943:5:173:-5.37411,0,-74.6243 dDocent_Contig_3141 44 . T C 59.2112 . AB=0.107143;ABP=40.5458;AC=0;AF=0;AN=6;AO=6;CIGAR=1X2M1X2M1X2M1X;DP=84;DPB=84;DPRA=0;EPP=16.0391;EPPR=152.842;GTI=0;LEN=1;MEANALT=2;MQM=16;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=227;QR=2689;RO=69;RPL=6;RPP=16.0391;RPPR=152.842;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:19:15,3,1:15:574:3,1:113,40:0,-1.28907,-47.4705,-1.16038,-45.0775,-48.1457 0|0:37:32,0,5:32:1243:0,5:0,190:-6.3245,-15.9575,-118.1,0,-102.524,-101.018 0|0:28:22,3,3:22:872:3,3:114,117:-3.10819,-6.43707,-77.3172,0,-68.6052,-71.0825 dDocent_Contig_3142 8 . C T 332.594 . 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T G 284.147 . AB=0.75;ABP=5.18177;AC=6;AF=1;AN=6;AO=9;CIGAR=1X3M2X;DP=10;DPB=10;DPRA=0;EPP=22.5536;EPPR=0;GTI=0;LEN=1;MEANALT=1.33333;MQM=56.1111;MQMR=0;NS=3;NUMALT=2;ODDS=0;PAIRED=0.444444;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=309;QR=0;RO=0;RPL=0;RPP=22.5536;RPPR=0;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,0,2:0:0:0,2:0,67:-6.36314,-6.36314,-6.36314,-0.60206,-0.60206,0 1|1:4:0,0,4:0:0:0,4:0,137:-12.6682,-12.6682,-12.6682,-1.20412,-1.20412,0 1|1:4:0,1,3:0:0:1,3:35,105:-10.7789,-7.9225,-7.62147,-3.1976,0,-2.29451 dDocent_Contig_3149 36 . T C 2583.61 . AB=0.0877193;ABP=171.318;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1M1D4M1X2M1X;DP=114;DPB=104.6;DPRA=0;EPP=24.725;EPPR=46.4397;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=378;QR=782;RO=20;RPL=0;RPP=24.725;RPPR=46.4397;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:57:8,6,43:8:310:6,43:221,1583:-126.986,-111.324,-134.988,0,-7.41579,-12.5338 0|0:25:12,1,12:12:472:1,12:40,414:-29.9507,-30.2638,-68.8135,0,-35.5249,-35.2081 1|0:32:0,3,29:0:0:3,29:117,1167:-106.197,-96.581,-95.6779,-10.0071,0,-1.27725 dDocent_Contig_3150 37 . A C 131.168 . AB=0.170213;ABP=47.41;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=124;DPB=124;DPRA=1.22078;EPP=20.3821;EPPR=252.73;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=317;QR=4540;RO=115;RPL=0;RPP=20.3821;RPPR=252.73;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=115;SRP=252.73;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:38,8:38:1493:8:317:-14.6397,0,-120.362 0/0:14:14,0:14:545:0:0:0,-4.21442,-49.3919 0/0:63:63,0:63:2502:0:0:0,-18.9649,-225.319 dDocent_Contig_3151 15 . T A 286.535 . AB=0.178571;ABP=78.3914;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=7M1X2M;DP=84;DPB=79.8;DPRA=0;EPP=35.5824;EPPR=105.07;GTI=0;LEN=1;MEANALT=4.33333;MQM=42.4;MQMR=57.0638;NS=3;NUMALT=5;ODDS=1.38778e-17;PAIRED=0;PAIREDR=0.808511;PAO=0;PQA=0;PQR=0;PRO=0;QA=456;QR=1827;RO=47;RPL=0;RPP=35.5824;RPPR=105.07;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:20:11,0,2,2,1,3:11:426:0,2,2,1,3:0,75,18,41,118:-6.43435,-9.74568,-44.7805,-3.59689,-38.6464,-38.0444,-9.29083,-44.286,-38.1557,-43.684,-6.50581,-41.5483,-35.4139,-41.0555,-41.2473,0,-35.067,-28.9317,-34.5781,-31.8341,-34.164 0|1:36:17,6,1,0,0,11:17:657:6,1,0,0,11:231,40,0,0,297:-16.7096,-12.7057,-59.3267,-18.5313,-57.8429,-66.6613,-21.8271,-61.1328,-66.9624,-70.2523,-21.8271,-61.1328,-66.9624,-70.2523,-70.2523,0,-39.3608,-45.1745,-48.4652,-48.4652,-45.1539 0|0:28:19,0,2,0,5,1:19:744:0,2,0,5,1:0,76,0,203,41:-11.0323,-16.7519,-77.8205,-10.5347,-71.5991,-70.997,-16.7519,-77.8205,-71.5991,-77.8205,0,-61.0754,-54.854,-61.0754,-59.5703,-13.3992,-74.4683,-68.2469,-74.4683,-57.723,-74.1673 dDocent_Contig_3152 8 . C T 269.594 . AB=0.166667;ABP=31.9633;AC=0;AF=0;AN=6;AO=5;CIGAR=1X1M3X4M;DP=50;DPB=50;DPRA=0;EPP=13.8677;EPPR=63.8115;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=189;QR=1069;RO=28;RPL=0;RPP=13.8677;RPPR=63.8115;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:20:11,0,2,7:11:420:0,2,7:0,80,277:-19.4904,-22.8017,-57.2499,-16.4679,-50.914,-50.3119,0,-34.4512,-28.1146,-32.344 0|0:19:8,4,2,4:8:297:4,2,4:154,81,162:-10.9569,-0.725196,-23.8115,-6.9677,-18.6165,-30.6593,0,-11.6496,-17.8965,-23.0923 0|0:11:9,1,0,1:9:352:1,0,1:35,0,41:-0.704607,-0.595938,-29.2197,-3.41388,-29.5207,-32.3646,0,-26.1348,-28.9784,-28.6774 dDocent_Contig_3154 39 . G A 138.575 . AB=0.173913;ABP=45.4956;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=219;DPB=219;DPRA=0.531792;EPP=20.3821;EPPR=461.191;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=324;QR=8123;RO=211;RPL=0;RPP=20.3821;RPPR=461.191;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=211;SRP=461.191;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:127:127,0:127:4915:0:0:0,-38.2308,-442.298 0/0:46:46,0:46:1803:0:0:0,-13.8474,-162.491 0/1:46:38,8:38:1405:8:324:-15.6814,0,-112.854 dDocent_Contig_3157 50 . C A 61.4496 . AB=0.272727;ABP=7.94546;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=73;DPB=73;DPRA=0.354839;EPP=9.52472;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=2735;RO=69;RPL=3;RPP=9.52472;RPPR=152.842;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:35:34,0:34:1333:0:0:0,-10.235,-120.135 0/0:27:27,0:27:1081:0:0:0,-8.12781,-97.5779 0/1:11:8,3:8:321:3:121:-7.96887,0,-25.9463 dDocent_Contig_3158 21 . G A 102.853 . AB=0.0909091;ABP=82.96;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1M1X7M;DP=138;DPB=140.667;DPRA=1.77419;EPP=13.8677;EPPR=274.444;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=192;QR=4881;RO=125;RPL=0;RPP=13.8677;RPPR=274.444;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=125;SRP=274.444;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:52:44,8,0:44:1727:8,0:301,0:-11.7908,0,-140.02,-25.0361,-142.428,-167.086 0|1:55:50,0,5:50:1943:0,5:0,192:-1.089,-16.1405,-175.806,0,-160.05,-158.545 0|0:31:31,0,0:31:1211:0,0:0,0:0,-9.33193,-109.273,-9.33193,-109.273,-109.273 dDocent_Contig_3159 107 . N T 56.9965 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=60;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:60:-5.69857,-0.60206,0 dDocent_Contig_3160 104 . N A 270.202 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=8;CIGAR=5X12I2M;DP=8;DPB=21.7143;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=53.75;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=290;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:4:0,4:0:0:4:146:-13.4819,-1.20412,0 .:.:.:.:.:.:.:. 1|1:4:0,4:0:0:4:144:-13.237,-1.20412,0 dDocent_Contig_3161 30 . G C 103.67 . AB=0.214286;ABP=22.8638;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=54;DPB=54;DPRA=0.538462;EPP=16.0391;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=1908;RO=48;RPL=0;RPP=16.0391;RPPR=107.241;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:1033:0:0:0,-7.82678,-93.2664 0/1:19:17,2:17:676:2:81:-1.96616,0,-55.4498 0/1:9:5,4:5:199:4:160:-12.0742,0,-15.5797 dDocent_Contig_3162 23 . A C 5459.53 . AB=0.053407;ABP=943.682;AC=3;AF=0.5;AN=6;AO=29;CIGAR=1X2M2X2M1X;DP=543;DPB=544.25;DPRA=0;EPP=65.983;EPPR=489.42;GTI=0;LEN=1;MEANALT=10.3333;MQM=60;MQMR=56.1429;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1156;QR=8404;RO=224;RPL=0;RPP=65.983;RPPR=489.42;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=224;SRP=489.42;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:178:70,13,68,11,1:70:2619:13,68,11,1:503,2636,440,41:-192.6,-172.511,-371.757,0,-161.987,-182.68,-177.425,-339.423,-166.902,-377.275,-210.288,-372.287,-199.766,-377.202,-413.148 0|1:178:61,16,59,13,9:61:2256:16,59,13,9:625,2299,518,338:-163.406,-130.908,-304.279,0,-127.324,-160.425,-139.108,-266.435,-135.524,-313.382,-154.085,-281.412,-150.501,-289.612,-329.563 0|1:187:93,8,71,5,1:93:3529:8,71,5,1:310,2761,198,40:-195.47,-198.006,-477.19,0,-256.131,-260.219,-207.169,-463.302,-265.294,-487.256,-220.204,-476.337,-278.33,-485.499,-501.495 dDocent_Contig_3163 7 . C A 126.288 . AB=0.214286;ABP=22.8638;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X1M2I4M2I2M7I2M;DP=70;DPB=79.5;DPRA=1;EPP=16.0391;EPPR=126.784;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=227;QR=2234;RO=57;RPL=0;RPP=16.0391;RPPR=126.784;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:28:20,0,6:20:781:0,6:0,227:-12.6878,-18.7084,-82.9463,0,-64.3374,-62.5312 0|0:14:9,2,0:9:347:2,0:75,0:-3.4589,0,-27.9459,-6.16817,-28.548,-34.6926 0|0:28:28,0,0:28:1106:0,0:0,0:0,-8.42884,-99.8366,-8.42884,-99.8366,-99.8366 dDocent_Contig_3164 209 . N G 75.9287 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:80:-7.59179,-0.60206,0 dDocent_Contig_3165 17 . C A 150.838 . AB=0.210526;ABP=30.668;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=229;DPB=229;DPRA=0.397906;EPP=20.3821;EPPR=482.906;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.99095;PAO=0;PQA=0;PQR=0;PRO=0;QA=311;QR=8762;RO=221;RPL=0;RPP=20.3821;RPPR=482.906;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=221;SRP=482.906;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:90:90,0:90:3577:0:0:0,-27.0927,-321.98 0/0:101:101,0:101:3981:0:0:0,-30.404,-358.31 0/1:38:30,8:30:1204:8:311:-16.9078,0,-97.1941 dDocent_Contig_3166 107 . N G 187.129 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:25:-2.49986,-0.30103,0 1/1:5:0,5:0:0:5:173:-15.9102,-1.50515,0 ./.:.:.:.:.:.:.:. dDocent_Contig_3167 11 . G A 85.1637 . AB=0.333333;ABP=5.9056;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=16.0391;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=1588;RO=40;RPL=0;RPP=16.0391;RPPR=89.8692;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:18,1:18:697:1:40:0,-1.72389,-59.058 0/0:15:14,1:14:564:1:40:0,-0.519771,-47.1077 0/1:12:8,4:8:327:4:151:-10.3398,0,-26.1877 dDocent_Contig_3168 107 . N T 61.3433 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=46;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=65;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:65:-6.13325,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_3169 209 . N G 117.857 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 1/1:1:0,1:0:0:1:38:-3.79727,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_3170 64 . C A 296.309 . AB=0.192771;ABP=71.0585;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=1X;DP=134;DPB=134;DPRA=0;EPP=46.4397;EPPR=250.558;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=779;QR=4488;RO=114;RPL=20;RPP=46.4397;RPPR=250.558;RPR=0;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:51:47,4:47:1849:4:141:0,-2.31975,-153.591 0/1:60:49,11:49:1919:11:447:-22.5237,0,-154.862 0/1:23:18,5:18:720:5:191:-10.63,0,-58.1995 dDocent_Contig_3174 188 . N G 909.503 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=25;CIGAR=1X;DP=25;DPB=25;DPRA=0;EPP=57.2971;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.96;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=993;QR=0;RO=0;RPL=25;RPP=57.2971;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=57.2971;SAR=25;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:16:0,16:0:0:16:629:-56.9461,-4.81648,0 1/1:2:0,2:0:0:2:80:-7.59179,-0.60206,0 1/1:7:0,7:0:0:7:284:-25.9338,-2.10721,0 dDocent_Contig_3189 150 . A C 1799.4 . AB=0.594059;ABP=10.7717;AC=3;AF=0.5;AN=6;AO=60;CIGAR=1X;DP=101;DPB=101;DPRA=0;EPP=133.299;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2368;QR=1609;RO=41;RPL=0;RPP=133.299;RPPR=92.0407;RPR=60;RUN=1;SAF=0;SAP=133.299;SAR=60;SRF=0;SRP=92.0407;SRR=41;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:22,21:22:870:21:828:-61.8892,0,-65.6682 0/1:20:3,17:3:119:17:667:-54.3344,0,-5.0739 0/1:38:16,22:16:620:22:873:-67.4332,0,-44.6917 dDocent_Contig_3190 108 . G A 34.9158 . AB=0.25;ABP=9.52472;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=36;DPB=36;DPRA=1;EPP=9.52472;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.969697;PAO=0;PQA=0;PQR=0;PRO=0;QA=86;QR=1120;RO=33;RPL=0;RPP=9.52472;RPPR=74.6689;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=74.6689;SRR=33;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:9,3:9:309:3:86:-4.41225,0,-24.5309 0/0:10:10,0:10:329:0:0:0,-3.0103,-29.9303 0/0:14:14,0:14:482:0:0:0,-4.21442,-43.7085 dDocent_Contig_3191 39 . C A 1444.35 . AB=0.182482;ABP=122.98;AC=0;AF=0;AN=6;AO=25;CIGAR=4M1X;DP=137;DPB=126.6;DPRA=0;EPP=57.2971;EPPR=133.299;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=999;QR=2383;RO=60;RPL=0;RPP=57.2971;RPPR=133.299;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:67:31,20,16:31:1228:20,16:779,642:-54.6778,0,-95.0472,-11.1071,-48.1687,-107.366 0|0:22:7,12,3:7:279:12,3:464,122:-35.987,0,-19.3575,-28.027,-12.9042,-50.1038 0|0:48:22,20,6:22:876:20,6:780,235:-57.4874,0,-66.1166,-44.7871,-52.816,-115.117 dDocent_Contig_3192 19 . T G 619.605 . AB=0.180412;ABP=175.116;AC=3;AF=0.5;AN=6;AO=35;CIGAR=1X;DP=194;DPB=194;DPRA=0;EPP=79.0118;EPPR=348.274;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1367;QR=6358;RO=159;RPL=0;RPP=79.0118;RPPR=348.274;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=159;SRP=348.274;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:63:56,7:56:2243:7:279:-6.51626,0,-183.074 0/1:77:63,14:63:2519:14:551:-26.7514,0,-203.666 0/1:54:40,14:40:1596:14:537:-32.4096,0,-127.614 dDocent_Contig_3193 93 . T A 60.1832 . AB=0.107143;ABP=40.5458;AC=0;AF=0;AN=6;AO=3;CIGAR=1X1M1X;DP=132;DPB=132;DPRA=0.430769;EPP=9.52472;EPPR=261.416;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=98;QR=4008;RO=119;RPL=3;RPP=9.52472;RPPR=261.416;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=119;SRP=261.416;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:65:64,0,1:64:2154:0,1:0,30:0,-19.2659,-193.832,-16.5674,-191.434,-191.133 0|0:39:34,0,5:34:1140:0,5:0,165:-3.43536,-13.6704,-106.005,0,-92.6653,-91.1601 0|0:28:21,3,4:21:714:3,4:98,138:-4.90028,-3.31505,-60.3243,0,-50.0152,-56.7241 dDocent_Contig_3194 8 . T C 15694.6 . AB=0.213419;ABP=1119.42;AC=6;AF=1;AN=6;AO=334;CIGAR=1X8M1X;DP=1565;DPB=1565;DPRA=0;EPP=728.282;EPPR=315.702;GTI=0;LEN=1;MEANALT=26.6667;MQM=59.2994;MQMR=60;NS=3;NUMALT=6;ODDS=4.44089e-16;PAIRED=0.979042;PAIREDR=0.986111;PAO=0;PQA=0;PQR=0;PRO=0;QA=12634;QR=5608;RO=144;RPL=0;RPP=728.282;RPPR=315.702;RPR=334;RUN=1;SAF=334;SAP=728.282;SAR=0;SRF=144;SRP=315.702;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:645:72,75,129,20,27,163,26:72:2805:75,129,20,27,163,26:2881,4907,769,1030,6162,1017:-654.188,-439.65,-647.617,-274.274,-268.607,-465.986,-612.812,-607.144,-441.769,-837.336,-591.37,-585.702,-420.327,-758.864,-813.786,-171.042,-165.375,0,-338.537,-317.094,-352.519,-592.319,-586.651,-421.276,-759.814,-738.371,-318.044,-815.037 1|1:397:41,23,82,9,27,79,30:41:1595:23,82,9,27,79,30:884,3177,352,1027,2980,1176:-361.405,-301.289,-425.442,-112.781,-171.399,-219.174,-344.806,-403.424,-214.916,-473.173,-289.524,-348.142,-159.634,-391.659,-412.473,-129.889,-188.508,0,-232.025,-176.743,-237.185,-277.119,-335.737,-147.229,-379.254,-323.972,-164.338,-399.165 1|1:523:31,40,120,37,22,92,31:31:1208:40,120,37,22,92,31:1550,4639,1434,829,3492,1205:-557.585,-439.894,-527.14,-186.965,-159.229,-250.129,-449.277,-421.542,-168.613,-537.427,-499.055,-471.319,-218.391,-480.703,-591.72,-280.664,-252.929,0,-262.312,-312.09,-352.257,-468.153,-440.418,-187.489,-449.801,-499.579,-281.188,-558.109 dDocent_Contig_3195 24 . 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AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=2X1M1I4M;DP=5;DPB=5.71429;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=170;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:4:0,4:0:0:4:136:-12.22,-1.20412,0 .:.:.:.:.:.:.:. 1|1:1:0,1:0:0:1:34:-3.30271,-0.30103,0 dDocent_Contig_3204 16 . T A 351.313 . AB=0.304348;ABP=18.305;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=2M1X2M;DP=61;DPB=59.8;DPRA=1.53333;EPP=33.4109;EPPR=98.5551;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.909091;PAO=0;PQA=0;PQR=0;PRO=0;QA=555;QR=1740;RO=44;RPL=0;RPP=33.4109;RPPR=98.5551;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:17:12,0,5:12:469:0,5:0,196:-12.8955,-16.5079,-55.0644,0,-38.9478,-37.4426 0|1:29:17,2,9:17:680:2,9:67,359:-24.5546,-24.2548,-79.6872,0,-50.7184,-53.4273 0|0:15:15,0,0:15:591:0,0:0,0:0,-4.51545,-53.5285,-4.51545,-53.5285,-53.5285 dDocent_Contig_3206 8 . C A 306.26 . AB=0.165289;ABP=120.754;AC=2;AF=0.333333;AN=6;AO=27;CIGAR=1X;DP=218;DPB=218;DPRA=0;EPP=61.6401;EPPR=417.762;GTI=0;LEN=1;MEANALT=1;MQM=52;MQMR=57.1047;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.874346;PAO=0;PQA=0;PQR=0;PRO=0;QA=1036;QR=7346;RO=191;RPL=0;RPP=61.6401;RPPR=417.762;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=191;SRP=417.762;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:97:90,7:90:3469:7:269:0,-4.70226,-280.854 0/1:50:41,9:41:1559:9:344:-16.1009,0,-121.363 0/1:71:60,11:60:2318:11:423:-16.8439,0,-186.915 dDocent_Contig_3207 31 . C T 72.6239 . AB=0.119403;ABP=87.3088;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=198;DPB=198;DPRA=1.0229;EPP=20.3821;EPPR=415.59;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=311;QR=7568;RO=190;RPL=0;RPP=20.3821;RPPR=415.59;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=190;SRP=415.59;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:59,8:59:2347:8:311:-8.18321,0,-191.223 0/0:62:62,0:62:2446:0:0:0,-18.6639,-220.306 0/0:69:69,0:69:2775:0:0:0,-20.7711,-249.857 dDocent_Contig_3208 111 . A C 72.8011 . AB=0.2;ABP=30.3709;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=73;DPB=73;DPRA=1.84211;EPP=18.2106;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=2209;RO=66;RPL=0;RPP=18.2106;RPPR=146.327;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=146.327;SRR=66;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:28,7:28:927:7:205:-8.20093,0,-73.1994 0/0:11:11,0:11:372:0:0:0,-3.31133,-33.8074 0/0:27:27,0:27:910:0:0:0,-8.12781,-82.2081 dDocent_Contig_3209 27 . T G 1428.73 . AB=0.229682;ABP=182.629;AC=3;AF=0.5;AN=6;AO=65;CIGAR=1X;DP=283;DPB=283;DPRA=0;EPP=144.156;EPPR=476.391;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.990826;PAO=0;PQA=0;PQR=0;PRO=0;QA=2565;QR=8713;RO=218;RPL=0;RPP=144.156;RPPR=476.391;RPR=65;RUN=1;SAF=65;SAP=144.156;SAR=0;SRF=218;SRP=476.391;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:127:91,36:91:3608:36:1423:-90.0963,0,-286.516 0/1:83:68,15:68:2727:15:592:-28.6298,0,-220.564 0/1:73:59,14:59:2378:14:550:-27.8634,0,-192.191 dDocent_Contig_3210 33 . T A 33.0075 . AB=0.114286;ABP=48.239;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=119;DPB=119;DPRA=1.06579;EPP=13.8677;EPPR=250.558;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=186;QR=4570;RO=114;RPL=0;RPP=13.8677;RPPR=250.558;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:46:45,1:45:1772:1:23:0,-11.5475,-157.391 0/1:35:31,4:31:1256:4:163:-4.52238,0,-102.769 0/0:38:38,0:38:1542:0:0:0,-11.4391,-139.014 dDocent_Contig_3211 98 . N A 64.6225 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:68:-6.45793,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_3214 11 . T A 1625.49 . AB=0.448819;ABP=5.8999;AC=3;AF=0.5;AN=6;AO=57;CIGAR=1X;DP=127;DPB=127;DPRA=0;EPP=126.784;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=59.9825;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.947368;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2262;QR=2807;RO=70;RPL=0;RPP=126.784;RPPR=155.013;RPR=57;RUN=1;SAF=57;SAP=126.784;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:34,16:34:1370:16:639:-42.7881,0,-108.504 0/1:13:11,2:11:433:2:69:-2.6385,0,-35.4079 0/1:64:25,39:25:1004:39:1554:-120.831,0,-71.3872 dDocent_Contig_3215 199 . A G 41.8057 . AB=0.222222;ABP=15.074;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=55;DPB=55;DPRA=0.972973;EPP=11.6962;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=1918;RO=51;RPL=4;RPP=11.6962;RPPR=113.755;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=113.755;SRR=51;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:589:0:0:0,-4.81648,-53.3378 0/1:18:14,4:14:526:4:117:-5.40239,0,-42.2615 0/0:21:21,0:21:803:0:0:0,-6.32163,-72.5936 dDocent_Contig_3216 9 . T C 59.8455 . AB=0.109756;ABP=111.478;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1X;DP=271;DPB=271;DPRA=0.743119;EPP=35.5824;EPPR=556.736;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.9216;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.996078;PAO=0;PQA=0;PQR=0;PRO=0;QA=580;QR=9698;RO=255;RPL=0;RPP=35.5824;RPPR=556.736;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=255;SRP=556.736;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:82:73,9:73:2783:9:347:-6.90536,0,-225.021 0/0:80:74,6:74:2820:6:233:0,-2.74232,-232.488 0/0:109:108,0:108:4095:0:0:0,-32.5112,-366.026 dDocent_Contig_3217 39 . C G 1160.13 . AB=0.471264;ABP=3.63429;AC=3;AF=0.5;AN=6;AO=41;CIGAR=1X;DP=87;DPB=87;DPRA=0;EPP=92.0407;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1610;QR=1808;RO=46;RPL=0;RPP=92.0407;RPPR=102.898;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:3,7:3:113:7:279:-22.4711,0,-7.52749 0/1:28:19,9:19:740:9:347:-23.1529,0,-58.4904 0/1:49:24,25:24:955:25:984:-74.1061,0,-71.5024 dDocent_Contig_3218 35 . G T 42.5442 . AB=0.101266;ABP=112.106;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=183;DPB=183;DPRA=1.05085;EPP=24.725;EPPR=378.675;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=395;QR=6921;RO=173;RPL=0;RPP=24.725;RPPR=378.675;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=173;SRP=378.675;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:45:43,2:43:1693:2:74:0,-6.52233,-145.56 0/0:59:59,0:59:2364:0:0:0,-17.7608,-212.918 0/1:79:71,8:71:2864:8:321:-5.47624,0,-234.073 dDocent_Contig_3220 44 . A T 1101.28 . AB=0.187097;ABP=266.641;AC=3;AF=0.5;AN=6;AO=58;CIGAR=1X;DP=310;DPB=310;DPRA=0;EPP=69.053;EPPR=548.05;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.844828;PAIREDR=0.996016;PAO=0;PQA=0;PQR=0;PRO=0;QA=2289;QR=9958;RO=251;RPL=8;RPP=69.053;RPPR=548.05;RPR=50;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=251;SRP=548.05;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:101:85,16:85:3379:16:614:-25.182,0,-273.761 0/1:75:56,18:56:2232:18:713:-42.1211,0,-178.695 0/1:134:110,24:110:4347:24:962:-46.5414,0,-350.864 dDocent_Contig_3221 16 . C T 57.2749 . AB=0.2;ABP=14.7363;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=65;DPB=65;DPRA=0.6;EPP=9.52472;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.983871;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=2462;RO=62;RPL=0;RPP=9.52472;RPPR=137.642;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:918:0:0:0,-6.92369,-82.9266 0/1:15:12,3:12:469:3:123:-6.94934,0,-38.0407 0/0:27:27,0:27:1075:0:0:0,-8.12781,-97.0414 dDocent_Contig_3222 21 . C A 409.012 . AB=0.218391;ABP=62.9379;AC=2;AF=0.333333;AN=6;AO=24;CIGAR=1X;DP=149;DPB=149;DPRA=0;EPP=55.1256;EPPR=274.444;GTI=0;LEN=1;MEANALT=1;MQM=54.375;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.25;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=971;QR=4977;RO=125;RPL=0;RPP=55.1256;RPPR=274.444;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=125;SRP=274.444;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:32,11:32:1264:11:445:-27.4163,0,-101.091 0/1:44:36,8:36:1431:8:324:-15.7995,0,-115.793 0/0:62:57,5:57:2282:5:202:0,-0.148998,-187.029 dDocent_Contig_3223 18 . C T 264.599 . AB=0.132911;ABP=187.943;AC=2;AF=0.333333;AN=6;AO=33;CIGAR=1X;DP=313;DPB=313;DPRA=0;EPP=74.6689;EPPR=608.851;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1300;QR=11211;RO=279;RPL=0;RPP=74.6689;RPPR=608.851;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=279;SRP=608.851;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:78:64,14:64:2572:14:559:-27.1712,0,-208.131 0/1:80:72,7:72:2854:7:281:-1.5075,0,-232.811 0/0:155:143,12:143:5785:12:460:0,-4.92239,-478.68 dDocent_Contig_3224 26 . C G 113.085 . AB=0.277778;ABP=10.7311;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=84;DPB=84;DPRA=0.545455;EPP=13.8677;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=192;QR=3167;RO=79;RPL=0;RPP=13.8677;RPPR=174.557;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:13,5:13:520:5:192:-12.2293,0,-41.7294 0/0:39:39,0:39:1563:0:0:0,-11.7402,-140.912 0/0:27:27,0:27:1084:0:0:0,-8.12781,-97.848 dDocent_Contig_3225 178 . A T 776.353 . AB=0.322581;ABP=28.4375;AC=3;AF=0.5;AN=6;AO=30;CIGAR=1X;DP=93;DPB=93;DPRA=0;EPP=68.1545;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1203;QR=2513;RO=63;RPL=30;RPP=68.1545;RPPR=139.813;RPR=0;RUN=1;SAF=0;SAP=68.1545;SAR=30;SRF=0;SRP=139.813;SRR=63;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:4,8:4:160:8:321:-25.6455,0,-11.1712 0/1:37:26,11:26:1042:11:433:-28.1859,0,-82.932 0/1:44:33,11:33:1311:11:449:-27.5206,0,-105 dDocent_Contig_3226 205 . G T 183.727 . AB=0.179104;ABP=62.9365;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=121;DPB=121;DPRA=2.525;EPP=31.2394;EPPR=237.529;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=475;QR=3823;RO=108;RPL=13;RPP=31.2394;RPPR=237.529;RPR=0;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=237.529;SRR=108;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:33,1:33:1173:1:37:0,-6.53719,-102.178 0/1:67:55,12:55:1930:12:438:-19.5945,0,-153.802 0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1254 dDocent_Contig_3227 98 . N T 75.8697 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:31:-3.09945,-0.30103,0 1/1:2:0,2:0:0:2:44:-4.17984,-0.60206,0 dDocent_Contig_3228 40 . C A 47.5566 . AB=0.176471;ABP=18.4661;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=51;DPB=51;DPRA=1;EPP=9.52472;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=1924;RO=48;RPL=0;RPP=9.52472;RPPR=107.241;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:486:0:0:0,-3.61236,-44.0918 0/0:22:22,0:22:873:0:0:0,-6.62266,-78.8805 0/1:17:14,3:14:565:3:119:-5.9775,0,-46.0761 dDocent_Contig_3230 16 . G A 57.7336 . AB=0.0714286;ABP=47.6806;AC=0;AF=0;AN=6;AO=2;CIGAR=4M1X1M;DP=97;DPB=99.6667;DPRA=0.811594;EPP=7.35324;EPPR=196.271;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.921348;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=3530;RO=89;RPL=0;RPP=7.35324;RPPR=196.271;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:28:21,4,2:21:831:4,2:158,70:-6.69417,0,-67.2112,-7.3358,-62.7255,-75.1248 0|0:27:26,0,0:26:1025:0,0:0,0:0,-7.82678,-92.1393,-7.82678,-92.1393,-92.1393 0|0:42:42,0,0:42:1674:0,0:0,0:0,-12.6433,-150.893,-12.6433,-150.893,-150.893 dDocent_Contig_3231 9 . A T 1220.79 . AB=0.478261;ABP=3.38795;AC=3;AF=0.5;AN=6;AO=44;CIGAR=1X;DP=92;DPB=92;DPRA=0;EPP=98.5551;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1694;QR=1832;RO=48;RPL=0;RPP=98.5551;RPPR=107.241;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:4,8:4:154:8:310:-24.6512,0,-10.6212 0/1:32:22,10:22:829:10:384:-25.2834,0,-65.2977 0/1:48:22,26:22:849:26:1000:-75.8612,0,-62.2834 dDocent_Contig_3232 13 . T C 2237.02 . AB=0.415789;ABP=14.7134;AC=3;AF=0.5;AN=6;AO=79;CIGAR=2X;DP=190;DPB=190;DPRA=0;EPP=174.557;EPPR=239.701;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3151;QR=4301;RO=109;RPL=0;RPP=174.557;RPPR=239.701;RPR=79;RUN=1;SAF=79;SAP=174.557;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:48:22,25:22:875:25:993:-75.2444,0,-64.6368 0|1:69:48,20:48:1924:20:803:-51.9373,0,-152.719 0|1:73:39,34:39:1502:34:1355:-100.237,0,-113.45 dDocent_Contig_3233 8 . A T 2289.3 . AB=0.3;ABP=16.9077;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X2M1X;DP=115;DPB=115;DPRA=0;EPP=29.068;EPPR=76.8404;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.916667;PAIREDR=0.941176;PAO=0;PQA=0;PQR=0;PRO=0;QA=467;QR=1325;RO=34;RPL=0;RPP=29.068;RPPR=76.8404;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:27:12,0,15:12:463:0,15:0,586:-44.9484,-48.5608,-86.5808,0,-38.4077,-33.8922 0|0:48:16,0,32:16:623:0,32:0,1264:-99.58,-104.396,-155.599,0,-51.5931,-41.9601 1|0:40:6,12,22:6:239:12,22:467,866:-88.1186,-51.5468,-67.6167,-18.6892,0,-31.7508 dDocent_Contig_3235 16 . C T 45.2672 . AB=0.0769231;ABP=83.8559;AC=2;AF=0.333334;AN=6;AO=4;CIGAR=1X4M1X;DP=79;DPB=79;DPRA=0.962963;EPP=11.6962;EPPR=157.185;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.859155;PAO=0;PQA=0;PQR=0;PRO=0;QA=150;QR=2780;RO=71;RPL=0;RPP=11.6962;RPPR=157.185;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:18:14,0,3:14:539:0,3:0,117:-5.41795,-9.63237,-53.8842,0,-44.2657,-43.3627 0|0:27:27,0,0:27:1059:0,0:0,0:0,-8.12781,-95.6045,-8.12781,-95.6045,-95.6045 0|1:34:30,3,1:30:1182:3,1:118,33:-0.723055,0,-96.3957,-7.10152,-94.6326,-104.038 dDocent_Contig_3237 98 . N A 65.5698 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_3238 107 . N T 60.8269 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=64;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:64:-6.07837,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_3239 195 . G T 48.9048 . AB=0.12069;ABP=75.4926;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=174;DPB=174;DPRA=0.691781;EPP=20.3821;EPPR=363.475;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=297;QR=6506;RO=166;RPL=8;RPP=20.3821;RPPR=363.475;RPR=0;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=363.475;SRR=166;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:73:73,0:73:2848:0:0:0,-21.9752,-256.452 0/1:58:51,7:51:1999:7:258:-6.11233,0,-162.658 0/0:43:42,1:42:1659:1:39:0,-9.04772,-145.639 dDocent_Contig_3240 102 . N T 275.226 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=9;CIGAR=5X;DP=9;DPB=9;DPRA=0;EPP=22.5536;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=296;QR=0;RO=0;RPL=9;RPP=22.5536;RPPR=0;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:7:0,7:0:0:7:249:-22.7556,-2.10721,0 .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:47:-4.46369,-0.60206,0 dDocent_Contig_3242 96 . T G 32.0691 . AB=0.25;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=30;DPB=30;DPRA=0.727273;EPP=7.35324;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=72;QR=1003;RO=28;RPL=2;RPP=7.35324;RPPR=63.8115;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:431:0:0:0,-3.61236,-39.1307 0/1:8:6,2:6:215:2:72:-4.42848,0,-17.2909 0/0:10:10,0:10:357:0:0:0,-3.0103,-32.4722 dDocent_Contig_3244 23 . T A 46.849 . AB=0.176471;ABP=18.4661;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=48;DPB=48;DPRA=1.09677;EPP=9.52472;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=1805;RO=45;RPL=0;RPP=9.52472;RPPR=100.727;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:14,3:14:564:3:115:-5.6057,0,-45.9848 0/0:12:12,0:12:475:0:0:0,-3.61236,-43.0995 0/0:19:19,0:19:766:0:0:0,-5.71957,-69.2616 dDocent_Contig_3245 98 . N A 122.998 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=133;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:133:-12.2988,-1.20412,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_3246 127 . A G 1526.98 . AB=0.7375;ABP=42.2054;AC=3;AF=0.5;AN=6;AO=59;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=131.127;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1995;QR=724;RO=21;RPL=0;RPP=131.127;RPPR=48.6112;RPR=59;RUN=1;SAF=0;SAP=131.127;SAR=59;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:6,18:6:209:18:608:-47.8143,0,-11.9254 0/1:27:11,16:11:371:16:524:-39.344,0,-25.585 0/1:29:4,25:4:144:25:863:-69.2567,0,-4.58375 dDocent_Contig_3247 19 . C A 154.969 . AB=0.169492;ABP=58.9901;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=87;DPB=87;DPRA=0;EPP=26.8965;EPPR=159.471;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.973684;PAO=0;PQA=0;PQR=0;PRO=0;QA=426;QR=2949;RO=76;RPL=0;RPP=26.8965;RPPR=168.042;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=75;SRP=159.471;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:30,7:30:1151:7:269:-13.4352,0,-92.7366 0/0:28:27,1:27:1060:1:39:0,-4.53228,-91.8024 0/1:22:19,3:19:738:3:118:-4.38023,0,-60.1188 dDocent_Contig_3248 34 . A C 146.181 . AB=0.233333;ABP=21.5402;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=51;DPB=51;DPRA=0.714286;EPP=18.2106;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=280;QR=1744;RO=44;RPL=0;RPP=18.2106;RPPR=98.5551;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:11,5:11:442:5:202:-13.7456,0,-35.3177 0/1:14:12,2:12:473:2:78:-3.18888,0,-38.7027 0/0:21:21,0:21:829:0:0:0,-6.32163,-74.922 dDocent_Contig_3249 26 . C G 81.9806 . AB=0.235294;ABP=13.3567;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=81;DPB=81;DPRA=0;EPP=18.2106;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=265;QR=2877;RO=74;RPL=0;RPP=18.2106;RPPR=163.699;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:13,4:13:511:4:154:-9.11595,0,-41.22 0/0:24:22,2:22:845:2:73:0,-0.294018,-69.4359 0/0:40:39,1:39:1521:1:38:0,-8.24393,-133.35 dDocent_Contig_3250 17 . C T 35.2811 . AB=0.130435;ABP=30.2953;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=106;DPB=106;DPRA=0.677778;EPP=11.6962;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=4089;RO=102;RPL=0;RPP=11.6962;RPPR=224.5;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:20,3:20:801:3:122:-4.4488,0,-65.4857 0/0:45:45,0:45:1799:0:0:0,-13.5463,-162.124 0/0:38:37,1:37:1489:1:40:0,-7.44346,-130.256 dDocent_Contig_3251 74 . A G 247.651 . AB=0.282609;ABP=21.8927;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=179;DPB=179;DPRA=1.22115;EPP=33.4109;EPPR=361.303;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=475;QR=5623;RO=165;RPL=14;RPP=33.4109;RPPR=361.303;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=165;SRP=361.303;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:52:52,0:52:1766:0:0:0,-15.6536,-159.221 0/0:81:80,1:80:2729:1:36:0,-20.7852,-242.257 0/1:46:33,13:33:1128:13:439:-25.987,0,-87.9772 dDocent_Contig_3253 22 . G T 112.547 . AB=0.384615;ABP=4.51363;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=30;DPB=30;DPRA=1.52941;EPP=13.8677;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=175;QR=980;RO=25;RPL=0;RPP=13.8677;RPPR=57.2971;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:8,5:8:316:5:175:-12.1755,0,-24.8902 0/0:9:9,0:9:352:0:0:0,-2.70927,-32.0371 0/0:8:8,0:8:312:0:0:0,-2.40824,-28.4425 dDocent_Contig_3254 98 . N C 123.921 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=3X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=134;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:4:0,4:0:0:4:134:-12.3911,-1.20412,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_3255 9 . T C 169.081 . AB=0.185185;ABP=49.4959;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=74;DPB=74;DPRA=1.35;EPP=24.725;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=386;QR=2439;RO=64;RPL=0;RPP=24.725;RPPR=141.985;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:771:0:0:0,-6.0206,-69.7182 0/1:33:27,6:27:1012:6:232:-11.3151,0,-81.4524 0/1:21:17,4:17:656:4:154:-7.91183,0,-53.0543 dDocent_Contig_3256 54 . T A 847.919 . AB=0.142308;ABP=580.889;AC=2;AF=0.333333;AN=6;AO=91;CIGAR=1X;DP=759;DPB=759;DPRA=0;EPP=200.614;EPPR=1453.55;GTI=0;LEN=1;MEANALT=1;MQM=48.0879;MQMR=60;NS=3;NUMALT=1;ODDS=2.77556e-17;PAIRED=0.0989011;PAIREDR=0.494012;PAO=0;PQA=0;PQR=0;PRO=0;QA=3554;QR=26266;RO=668;RPL=91;RPP=200.614;RPPR=1453.55;RPR=0;RUN=1;SAF=91;SAP=200.614;SAR=0;SRF=668;SRP=1453.55;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:243:201,42:201:7896:42:1638:-58.3558,0,-637.144 0/0:239:222,17:222:8647:17:644:0,-19.9188,-725.793 0/1:277:245,32:245:9723:32:1272:-28.7549,0,-791.111 dDocent_Contig_3258 11 . C T 1039.59 . AB=0.0804124;ABP=744.664;AC=3;AF=0.5;AN=6;AO=39;CIGAR=1X4M;DP=485;DPB=485;DPRA=0;EPP=87.6977;EPPR=724.338;GTI=0;LEN=1;MEANALT=6;MQM=59.8205;MQMR=57.3592;NS=3;NUMALT=3;ODDS=5.55112e-17;PAIRED=0.205128;PAIREDR=0.428161;PAO=0;PQA=0;PQR=0;PRO=0;QA=1473;QR=13590;RO=348;RPL=0;RPP=87.6977;RPPR=758.683;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=344;SRP=724.338;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:169:121,26,9,1:121:4740:26,9,1:1021,327,40:-47.559,0,-377.304,-57.2878,-358.432,-439.698,-80.6882,-381.836,-439.112,-465.511 0|1:154:126,13,2,8:126:4888:13,2,8:499,79,324:-3.00013,0,-382.539,-34.4287,-379.951,-420.283,-14.2148,-359.742,-394.175,-398.268 0|1:162:101,17,28,0:101:3962:17,28,0:651,1067,0:-57.1128,-34.1728,-347.497,0,-265.106,-310.017,-87.5169,-352.614,-318.446,-405.954 dDocent_Contig_3259 15 . C A 77.342 . AB=0.16129;ABP=33.9012;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=158;DPB=158;DPRA=0.488189;EPP=13.8677;EPPR=330.903;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=6010;RO=151;RPL=0;RPP=13.8677;RPPR=330.903;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=151;SRP=330.903;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:69:67,0:67:2666:0:0:0,-20.169,-239.686 0/1:31:26,5:26:1009:5:199:-8.95605,0,-81.7715 0/0:58:58,0:58:2335:0:0:0,-17.4597,-210.302 dDocent_Contig_3260 107 . N A 100.773 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.29832;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=108;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0 dDocent_Contig_3262 10 . A G 4287.53 . AB=0.584699;ABP=14.4135;AC=5;AF=0.833333;AN=6;AO=107;CIGAR=1X3M;DP=183;DPB=183;DPRA=0;EPP=235.358;EPPR=57.2971;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4251;QR=951;RO=25;RPL=0;RPP=235.358;RPPR=57.2971;RPR=107;RUN=1;SAF=107;SAP=235.358;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:41:12,9,20:12:449:9,20:341,781:-60.5927,-36.2519,-70.3001,0,-8.80211,-30.7402 1|1:86:11,25,50:11:425:25,50:972,2017:-207.934,-131.375,-158.752,-44.9721,0,-64.8257 1|1:56:2,16,37:2:77:16,37:625,1453:-163.942,-113.167,-114.673,-45.0569,0,-40.2405 dDocent_Contig_3263 201 . C T 1231.08 . AB=0.401575;ABP=13.6967;AC=3;AF=0.5;AN=6;AO=51;CIGAR=1X;DP=127;DPB=127;DPRA=0;EPP=113.755;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1823;QR=2722;RO=76;RPL=51;RPP=113.755;RPPR=168.042;RPR=0;RUN=1;SAF=0;SAP=113.755;SAR=51;SRF=0;SRP=168.042;SRR=76;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:31,13:31:1098:13:472:-29.5749,0,-85.8821 0/1:39:22,17:22:782:17:585:-41.2278,0,-58.9606 0/1:44:23,21:23:842:21:766:-56.022,0,-62.8589 dDocent_Contig_3264 98 . N A 53288.7 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=1746;CIGAR=2X;DP=1746;DPB=1747;DPRA=0;EPP=3794.4;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=59.9891;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.995991;PAIREDR=0;PAO=2;PQA=69;PQR=0;PRO=0;QA=59221;QR=0;RO=0;RPL=1746;RPP=3794.4;RPPR=0;RPR=0;RUN=1;SAF=1746;SAP=3794.4;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:468:0,468:0:0:468:15943:-1434.72,-140.882,0 1|1:708:0,708:0:0:708:23908:-2151,-213.129,0 1|1:570:0,570:0:0:570:19370:-1742.68,-171.587,0 dDocent_Contig_3265 14 . C A 123.716 . AB=0.0649351;ABP=129.604;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X3M;DP=85;DPB=85;DPRA=4.8125;EPP=13.8677;EPPR=152.842;GTI=0;LEN=1;MEANALT=2.5;MQM=52.4;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.8;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=184;QR=2694;RO=69;RPL=0;RPP=13.8677;RPPR=152.842;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:46:40,0,4,2:40:1564:0,4,2:0,162,81:-1.31712,-13.3583,-141.929,0,-128.569,-127.365,-6.67916,-135.249,-121.889,-134.647 0|0:31:21,3,1,6:21:817:3,1,6:115,22,240:-13.4873,-10.3671,-76.6165,-18.4201,-76.1175,-85.2535,0,-57.7452,-65.7822,-65.3773 0|0:8:8,0,0,0:8:313:0,0,0:0,0,0:0,-2.40824,-28.5341,-2.40824,-28.5341,-28.5341,-2.40824,-28.5341,-28.5341,-28.5341 dDocent_Contig_3266 43 . C G 38.847 . AB=0.108696;ABP=64.1892;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=155;DPB=155;DPRA=0.844037;EPP=13.8677;EPPR=320.103;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=5943;RO=150;RPL=0;RPP=13.8677;RPPR=320.103;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=150;SRP=328.731;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:41,5:41:1603:5:203:-4.80547,0,-130.652 0/0:65:65,0:65:2563:0:0:0,-19.5669,-230.808 0/0:44:44,0:44:1777:0:0:0,-13.2453,-160.132 dDocent_Contig_3267 58 . G A 1280.19 . AB=0.636364;ABP=13.6703;AC=2;AF=0.333333;AN=6;AO=45;CIGAR=1X;DP=104;DPB=104;DPRA=0;EPP=100.727;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1772;QR=2339;RO=59;RPL=45;RPP=100.727;RPPR=131.127;RPR=0;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:35,3:35:1396:3:110:0,-1.17859,-115.639 0/1:21:12,9:12:468:9:357:-26.1708,0,-36.1474 0/1:45:12,33:12:475:33:1305:-104.167,0,-29.5525 dDocent_Contig_3269 72 . C G 1478.94 . AB=0.637681;ABP=14.3712;AC=4;AF=0.666667;AN=6;AO=62;CIGAR=1X;DP=87;DPB=87;DPRA=0;EPP=137.642;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1890;QR=750;RO=25;RPL=62;RPP=137.642;RPPR=57.2971;RPR=0;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:18:0,18:0:0:18:539:-48.8008,-5.41854,0 0/1:25:8,17:8:236:17:544:-41.7424,0,-14.0034 0/1:44:17,27:17:514:27:807:-59.6698,0,-33.3077 dDocent_Contig_3272 12 . G A 775.317 . AB=0.161538;ABP=132.363;AC=1;AF=0.166667;AN=6;AO=21;CIGAR=1X2M1X;DP=130;DPB=130;DPRA=0;EPP=48.6112;EPPR=133.81;GTI=0;LEN=1;MEANALT=3.33333;MQM=59.8571;MQMR=55.6618;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.926471;PAO=0;PQA=0;PQR=0;PRO=0;QA=828;QR=2638;RO=68;RPL=0;RPP=48.6112;RPPR=150.67;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=66;SRP=133.81;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:39:12,11,16,0:12:468:11,16,0:431,620,0:-47.3216,-15.4937,-50.6408,0,-3.01698,-33.6399,-50.9339,-53.9521,-38.4564,-89.3915 0|0:67:39,7,8,13:39:1520:7,8,13:277,301,498:-29.1312,-18.0693,-127.994,-16.5573,-105.781,-126.175,0,-89.2238,-87.7064,-108.113 0|1:24:17,3,1,1:17:650:3,1,1:120,39,39:-4.79549,0,-52.4422,-6.70261,-50.1386,-59.7264,-6.70261,-50.1386,-56.8209,-59.7264 dDocent_Contig_3273 10 . G T 1023.66 . AB=0.0851064;ABP=213.828;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X1M1X;DP=200;DPB=200;DPRA=0;EPP=29.068;EPPR=247.106;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=59.1727;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.81295;PAO=0;PQA=0;PQR=0;PRO=0;QA=473;QR=5399;RO=139;RPL=0;RPP=29.068;RPPR=304.845;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=132;SRP=247.106;SRR=7;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:88:69,3,16:69:2687:3,16:121,615:-26.8655,-37.6563,-257.312,0,-210.55,-215.709 0|1:53:33,9,7:33:1248:9,7:352,283:-19.0079,0,-99.57,-5.60203,-78.9429,-105.779 0|0:59:37,0,22:37:1464:0,22:0,887:-60.2092,-71.3473,-191.634,0,-120.68,-114.057 dDocent_Contig_3274 12 . C A 109.579 . AB=0.142857;ABP=65.0524;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=86;DPB=86;DPRA=0.933333;EPP=20.3821;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=326;QR=3145;RO=78;RPL=0;RPP=20.3821;RPPR=172.385;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:32,6:32:1283:6:245:-10.9903,0,-104.299 0/0:30:30,0:30:1212:0:0:0,-9.0309,-109.352 0/1:18:16,2:16:650:2:81:-2.26719,0,-53.4144 dDocent_Contig_3276 77 . T A 126.019 . AB=0.177778;ABP=43.5927;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=73;DPB=73;DPRA=0.803571;EPP=20.3821;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=308;QR=2393;RO=65;RPL=8;RPP=20.3821;RPPR=144.156;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:9,4:9:344:4:152:-10.1362,0,-27.4045 0/1:32:28,4:28:1034:4:156:-4.78433,0,-83.7282 0/0:28:28,0:28:1015:0:0:0,-8.42884,-91.6638 dDocent_Contig_3278 13 . T C 6173.19 . AB=0.7751;ABP=166.69;AC=3;AF=0.5;AN=6;AO=193;CIGAR=1X;DP=249;DPB=249;DPRA=0;EPP=422.104;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7729;QR=2247;RO=56;RPL=0;RPP=422.104;RPPR=124.613;RPR=193;RUN=1;SAF=193;SAP=422.104;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:101:31,70:31:1246:70:2791:-220.895,0,-82.0083 0/1:73:18,55:18:717:55:2203:-176.462,0,-42.881 0/1:75:7,68:7:284:68:2735:-223.677,0,-3.35674 dDocent_Contig_3280 15 . G A 222.514 . AB=0.196721;ABP=51.7438;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=166;DPB=166;DPRA=1.1619;EPP=29.068;EPPR=337.417;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=461;QR=5817;RO=154;RPL=0;RPP=29.068;RPPR=337.417;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=154;SRP=337.417;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:48:48,0:48:1764:0:0:0,-14.4494,-159.016 0/1:61:49,12:49:1867:12:461:-23.4732,0,-149.895 0/0:57:57,0:57:2186:0:0:0,-17.1587,-196.947 dDocent_Contig_3281 25 . C T 227.901 . AB=0.184615;ABP=59.1679;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=178;DPB=178;DPRA=1.15044;EPP=29.068;EPPR=363.475;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=477;QR=6589;RO=166;RPL=0;RPP=29.068;RPPR=363.475;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=166;SRP=363.475;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:53,12:53:2119:12:477:-23.7109,0,-171.321 0/0:53:53,0:53:2093:0:0:0,-15.9546,-188.554 0/0:60:60,0:60:2377:0:0:0,-18.0618,-214.077 dDocent_Contig_3282 72 . C G 4475.1 . 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C T 1199.83 . AB=0.175258;ABP=358.415;AC=3;AF=0.5;AN=6;AO=68;CIGAR=1X;DP=388;DPB=388;DPRA=0;EPP=150.67;EPPR=697.881;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2662;QR=12450;RO=320;RPL=68;RPP=150.67;RPPR=697.881;RPR=0;RUN=1;SAF=0;SAP=150.67;SAR=68;SRF=0;SRP=697.881;SRR=320;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:97:66,31:66:2546:31:1226:-81.4158,0,-200.09 0/1:142:126,16:126:4891:16:600:-11.5838,0,-397.372 0/1:149:128,21:128:5013:21:836:-30.7003,0,-406.196 dDocent_Contig_3287 60 . T A 48.4107 . AB=0.125;ABP=51.8684;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=111;DPB=111;DPRA=0.853659;EPP=18.2106;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=4085;RO=104;RPL=7;RPP=18.2106;RPPR=228.843;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:41,0:41:1569:0:0:0,-12.3422,-141.444 0/1:40:35,5:35:1391:5:197:-6.06283,0,-113.406 0/0:30:28,2:28:1125:2:76:0,-1.81664,-94.3164 dDocent_Contig_3289 28 . T A 4917.72 . AB=0.612782;ABP=32.3986;AC=3;AF=0.5;AN=6;AO=163;CIGAR=1X;DP=266;DPB=266;DPRA=0;EPP=356.96;EPPR=226.672;GTI=0;LEN=1;MEANALT=1;MQM=59.1534;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.828221;PAIREDR=0.815534;PAO=0;PQA=0;PQR=0;PRO=0;QA=6463;QR=4059;RO=103;RPL=0;RPP=356.96;RPPR=226.672;RPR=163;RUN=1;SAF=163;SAP=356.96;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:94:36,58:36:1416:58:2281:-170.528,0,-99.3972 0/1:68:35,33:35:1373:33:1290:-95.8932,0,-103.357 0/1:104:32,72:32:1270:72:2892:-229.068,0,-83.2651 dDocent_Contig_3290 98 . N T 64.622 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:68:-6.45788,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_3291 7 . A T 393.395 . 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AB=0.556962;ABP=7.46319;AC=3;AF=0.5;AN=6;AO=88;CIGAR=1X;DP=158;DPB=158;DPRA=0;EPP=194.1;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3514;QR=2809;RO=70;RPL=0;RPP=194.1;RPPR=155.013;RPR=88;RUN=1;SAF=88;SAP=194.1;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:24,23:24:949:23:924:-69.3171,0,-71.5628 0/1:75:27,48:27:1087:48:1913:-149.805,0,-75.5388 0/1:36:19,17:19:773:17:677:-50.4234,0,-59.0524 dDocent_Contig_3293 20 . C A 1374.44 . AB=0.216867;ABP=234.181;AC=3;AF=0.5;AN=6;AO=72;CIGAR=1X;DP=332;DPB=332;DPRA=0;EPP=159.356;EPPR=554.564;GTI=0;LEN=1;MEANALT=2;MQM=47.9028;MQMR=54.3661;NS=3;NUMALT=1;ODDS=0;PAIRED=0.708333;PAIREDR=0.740157;PAO=0;PQA=0;PQR=0;PRO=0;QA=2867;QR=10029;RO=254;RPL=0;RPP=159.356;RPPR=554.564;RPR=72;RUN=1;SAF=72;SAP=159.356;SAR=0;SRF=254;SRP=554.564;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:106:74,30:74:2870:30:1197:-63.8871,0,-218.674 0/1:98:73,23:73:2880:23:929:-53.2672,0,-223.393 0/1:128:107,19:107:4279:19:741:-24.0068,0,-331.101 dDocent_Contig_3295 58 . A C 76.4994 . 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T C 87.1461 . AB=0.193548;ABP=28.2974;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=65;DPB=65;DPRA=1.82353;EPP=16.0391;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=207;QR=2092;RO=59;RPL=0;RPP=16.0391;RPPR=131.127;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:25,6:25:888:6:207:-9.63543,0,-70.904 0/0:12:12,0:12:429:0:0:0,-3.61236,-38.9495 0/0:22:22,0:22:775:0:0:0,-6.62266,-70.0722 dDocent_Contig_3298 7 . T A 10948.6 . AB=0.781046;ABP=212.948;AC=4;AF=0.666667;AN=6;AO=356;CIGAR=1X4M;DP=445;DPB=445;DPRA=0;EPP=767.393;EPPR=76.8404;GTI=0;LEN=1;MEANALT=5.66667;MQM=55.7303;MQMR=60;NS=3;NUMALT=3;ODDS=5.55112e-17;PAIRED=0.662921;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=13500;QR=1302;RO=34;RPL=0;RPP=776.054;RPPR=76.8404;RPR=356;RUN=1;SAF=355;SAP=767.393;SAR=1;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:146:12,11,10,110:12:454:11,10,110:424,371,4136:-331.601,-300.412,-334.319,-304.855,-307.273,-339.063,0,-2.41522,-6.86274,-4.10545 1|1:139:8,3,0,117:8:303:3,0,117:113,0,4468:-371.524,-364.683,-388.62,-373.932,-389.523,-398.772,-10.3664,-25.9679,-35.2205,0 0|1:160:14,4,0,129:14:545:4,0,129:155,0,4896:-394.059,-385.545,-429.135,-398.273,-430.339,-443.067,0,-32.0681,-44.7956,-5.9627 dDocent_Contig_3301 33 . G A 41.7586 . 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T A 1518.98 . AB=0.442623;ABP=6.49889;AC=3;AF=0.5;AN=6;AO=54;CIGAR=1X;DP=122;DPB=122;DPRA=0;EPP=120.27;EPPR=148.499;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2125;QR=2677;RO=67;RPL=54;RPP=120.27;RPPR=148.499;RPR=0;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:22,13:22:884:13:518:-36.4316,0,-69.3339 0/1:48:20,27:20:800:27:1065:-81.802,0,-57.981 0/1:39:25,14:25:993:14:542:-37.3814,0,-77.924 dDocent_Contig_3304 34 . C A 70.57 . AB=0.181818;ABP=22.3561;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=99;DPB=99;DPRA=0.571429;EPP=11.6962;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=3768;RO=95;RPL=0;RPP=11.6962;RPPR=209.3;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:18,4:18:709:4:158:-7.97782,0,-57.5169 0/0:37:37,0:37:1441:0:0:0,-11.1381,-129.936 0/0:40:40,0:40:1618:0:0:0,-12.0412,-145.846 dDocent_Contig_3305 32 . A G 167.479 . AB=0.2;ABP=34.2795;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=106;DPB=106;DPRA=1.39286;EPP=24.725;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=408;QR=3854;RO=96;RPL=0;RPP=24.725;RPPR=211.472;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:32,8:32:1276:8:326:-17.6687,0,-103.07 0/0:28:28,0:28:1127:0:0:0,-8.42884,-101.714 0/0:38:36,2:36:1451:2:82:0,-3.65946,-123.057 dDocent_Contig_3306 8 . A G 173.84 . AB=0.173913;ABP=66.7383;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=29.068;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=453;QR=2185;RO=57;RPL=0;RPP=29.068;RPPR=126.784;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:20,3:20:767:3:117:-3.98669,0,-62.4331 0/1:23:19,4:19:732:4:143:-6.29579,0,-59.2877 0/1:23:18,5:18:686:5:193:-10.8178,0,-55.1495 dDocent_Contig_3307 17 . G C 107.622 . AB=0.171429;ABP=35.8306;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=113;DPB=113;DPRA=0.897436;EPP=16.0391;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=246;QR=4227;RO=107;RPL=0;RPP=16.0391;RPPR=235.358;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:42,0:42:1640:0:0:0,-12.6433,-147.832 0/0:36:36,0:36:1413:0:0:0,-10.8371,-127.424 0/1:35:29,6:29:1174:6:246:-11.9841,0,-95.3978 dDocent_Contig_3308 9 . A T 25593.5 . AB=0.0585586;ABP=1881.82;AC=0;AF=0;AN=6;AO=65;CIGAR=1X1M1X4M;DP=1110;DPB=1109.14;DPRA=0;EPP=144.156;EPPR=72.4974;GTI=0;LEN=1;MEANALT=11;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=0.875;PAO=0;PQA=0;PQR=0;PRO=0;QA=2542;QR=1250;RO=32;RPL=0;RPP=144.156;RPPR=72.4974;RPR=65;RUN=1;SAF=65;SAP=144.156;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:313:18,20,24,37,10,196:18:704:20,24,37,10,196:785,918,1451,389,7707:-688.445,-629.301,-681.163,-618.547,-611.867,-669.205,-574.914,-568.234,-557.48,-621.658,-665.033,-658.353,-647.599,-603.965,-719.905,-61.0704,-54.3895,-43.6366,0,-90.1245,-59.9522 0|0:422:5,24,28,45,23,278:5:196:24,28,45,23,278:940,1092,1751,890,10845:-1016.24,-940.451,-949.345,-928.035,-866.857,-935.724,-873.859,-812.681,-800.265,-876.431,-945.577,-884.4,-871.983,-817.807,-954.772,-127.772,-66.5933,-54.1767,0,-71.7204,-60.2036 0|0:375:9,21,28,47,28,224:9:350:21,28,47,28,224:817,1101,1861,1091,8946:-858.377,-793.946,-816.386,-770.526,-732.148,-790.859,-707.923,-669.544,-646.125,-722.536,-774.224,-735.846,-712.426,-649.823,-794.557,-124.404,-86.0255,-62.6053,0,-66.3056,-85.7356 dDocent_Contig_3309 57 . A T 1899.29 . AB=0.389423;ABP=25.1009;AC=3;AF=0.5;AN=6;AO=81;CIGAR=2X;DP=208;DPB=208;DPRA=0;EPP=178.9;EPPR=276.616;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2835;QR=4780;RO=126;RPL=81;RPP=178.9;RPPR=276.616;RPR=0;RUN=1;SAF=81;SAP=178.9;SAR=0;SRF=126;SRP=276.616;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:60:45,15:45:1697:15:529:-29.8778,0,-134.928 0|1:82:53,29:53:2017:29:959:-61.9137,0,-157.074 0|1:66:28,37:28:1066:37:1347:-101.855,0,-76.5789 dDocent_Contig_3310 60 . G A 1208.55 . AB=0.575342;ABP=6.60959;AC=3;AF=0.5;AN=6;AO=42;CIGAR=1X;DP=73;DPB=73;DPRA=0;EPP=94.2121;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1617;QR=1202;RO=31;RPL=42;RPP=94.2121;RPPR=70.3259;RPR=0;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:4,13:4:126:13:500:-40.225,0,-6.52922 0/1:25:14,11:14:556:11:420:-30.6236,0,-42.8568 0/1:31:13,18:13:520:18:697:-53.7235,0,-37.8152 dDocent_Contig_3311 98 . N T 384.175 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=29.068;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=409;QR=0;RO=0;RPL=12;RPP=29.068;RPPR=0;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:66:-6.26831,-0.60206,0 1/1:6:0,6:0:0:6:205:-18.7853,-1.80618,0 1/1:4:0,4:0:0:4:138:-12.7604,-1.20412,0 dDocent_Contig_3312 174 . T A 46.3996 . AB=0.166667;ABP=20.3821;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=13.8677;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=192;QR=2106;RO=53;RPL=5;RPP=13.8677;RPPR=118.098;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=118.098;SRR=53;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:16,1:16:645:1:35:0,-1.61888,-54.8852 0/0:23:22,1:22:878:1:36:0,-3.32541,-75.7286 0/1:18:15,3:15:583:3:121:-5.86166,0,-47.3831 dDocent_Contig_3313 23 . C G 289.047 . AB=0.266667;ABP=24.2907;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=92;DPB=92;DPRA=1.92105;EPP=31.2394;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.987342;PAO=0;PQA=0;PQR=0;PRO=0;QA=519;QR=3127;RO=79;RPL=0;RPP=31.2394;RPPR=174.557;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:33,12:33:1321:12:478:-29.8255,0,-105.609 0/0:28:27,1:27:1061:1:41:0,-4.33427,-91.6792 0/0:19:19,0:19:745:0:0:0,-5.71957,-67.3702 dDocent_Contig_3314 98 . N T 34.2435 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=36;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:36:-3.41987,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_3315 14 . T C 5638.5 . AB=0.0994475;ABP=3282.11;AC=0;AF=0;AN=6;AO=234;CIGAR=1M1I1M1X3M;DP=2353;DPB=2479;DPRA=0;EPP=493.912;EPPR=2874.01;GTI=0;LEN=1;MEANALT=25.6667;MQM=35.9017;MQMR=51.5963;NS=3;NUMALT=2;ODDS=0;PAIRED=0.854701;PAIREDR=0.779259;PAO=0;PQA=0;PQR=0;PRO=0;QA=7973;QR=51689;RO=1350;RPL=0;RPP=511.135;RPPR=2934.5;RPR=234;RUN=1;SAF=232;SAP=493.912;SAR=2;SRF=1343;SRP=2874.01;SRR=7;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:856:498,94,121:498:18992:94,121:3302,3948:-149.688,-61.9722,-1473.66,0,-1202.36,-1403.56 0|0:520:295,39,109:295:11230:39,109:1348,3606:-186.191,-173.346,-1030.25,0,-767.007,-835.839 0|0:977:557,101,156:557:21467:101,156:3323,5229:-231.687,-152.691,-1817.64,0,-1448.69,-1648.4 dDocent_Contig_3317 1 . N T 116.058 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=33.75;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=144;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:144:-11.6047,-1.20412,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_3323 99 . N A 1606.98 . AB=0.648352;ABP=20.4059;AC=6;AF=1;AN=6;AO=59;CIGAR=2X;DP=91;DPB=325.5;DPRA=0;EPP=131.127;EPPR=0;GTI=0;LEN=1;MEANALT=3;MQM=38.1186;MQMR=0;NS=3;NUMALT=3;ODDS=0;PAIRED=0.847458;PAIREDR=0;PAO=5;PQA=162;PQR=0;PRO=0;QA=1993;QR=0;RO=0;RPL=59;RPP=131.127;RPPR=0;RPR=0;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:14:0,1,5,8:0:0:1,5,8:34,166,269:-29.6421,-26.8838,-26.5828,-16.2671,-13.5088,-14.762,-13.375,-10.6167,0,-10.9667 1|1:33:0,6,11,16:0:0:6,11,16:192,305,547:-58.7736,-43.3024,-41.4962,-34.6569,-19.1856,-31.3456,-24.1164,-8.64509,0,-19.3 1|1:44:0,5,4,35:0:0:5,4,35:170,122,1177:-75.9967,-62.2055,-60.7004,-66.2236,-52.4324,-65.0195,-13.7912,0,-4.01817,-3.25514 dDocent_Contig_3326 99 . N A 427.124 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=14;CIGAR=1X;DP=14;DPB=14;DPRA=0;EPP=33.4109;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=44.8571;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=470;QR=0;RO=0;RPL=14;RPP=33.4109;RPPR=0;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:167:-15.2637,-1.50515,0 1/1:1:0,1:0:0:1:34:-3.30271,-0.30103,0 1/1:8:0,8:0:0:8:269:-23.6658,-2.40824,0 dDocent_Contig_3329 131 . T G 110.54 . AB=0.156863;ABP=55.1682;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=129;DPB=129;DPRA=1.30769;EPP=20.3821;EPPR=265.758;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=303;QR=4658;RO=121;RPL=0;RPP=20.3821;RPPR=265.758;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=265.758;SRR=121;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:37,0:37:1438:0:0:0,-11.1381,-129.685 0/1:51:43,8:43:1639:8:303:-12.2758,0,-132.42 0/0:41:41,0:41:1581:0:0:0,-12.3422,-142.557 dDocent_Contig_3331 37 . C G 25795.7 . AB=0.0304487;ABP=2392.99;AC=0;AF=0;AN=6;AO=38;CIGAR=1X3M1X3M;DP=1248;DPB=1247.25;DPRA=0;EPP=85.5263;EPPR=72.4974;GTI=0;LEN=1;MEANALT=22.6667;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=2.22045e-16;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1471;QR=1251;RO=32;RPL=0;RPP=85.5263;RPPR=72.4974;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:396:8,17,19,28,242:8:305:17,19,28,242:652,752,1087,9600:-841.298,-790.198,-810.099,-783.387,-754.898,-802.687,-764.895,-736.406,-729.596,-781.486,-53.789,-25.2984,-18.4874,0,-5.95974 0|0:472:18,2,10,39,281:18:710:2,10,39,281:80,394,1529,11160:-966.468,-965.297,-1023.11,-939.473,-991.299,-994.879,-860.247,-912.073,-886.249,-906.923,-53.2183,-105.045,-79.2207,0,-27.0461 0|0:380:6,19,24,44,208:6:236:19,24,44,208:739,941,1742,8282:-775.516,-716.595,-730.289,-699.939,-658.625,-712.128,-662.19,-620.876,-604.22,-668.358,-95.713,-54.3967,-37.7397,0,-52.5131 dDocent_Contig_3332 81 . A G 109.907 . AB=0.141176;ABP=98.0697;AC=1;AF=0.166667;AN=6;AO=19;CIGAR=1X;DP=246;DPB=246;DPRA=0;EPP=44.2683;EPPR=495.935;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=650;QR=7963;RO=227;RPL=19;RPP=44.2683;RPPR=495.935;RPR=0;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=227;SRP=495.935;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:85:73,12:73:2562:12:413:-11.9115,0,-205.247 0/0:80:79,1:79:2751:1:32:0,-20.8831,-244.637 0/0:81:75,6:75:2650:6:205:0,-5.59887,-219.965 dDocent_Contig_3333 25 . A G 939.33 . AB=0.305785;ABP=42.6531;AC=2;AF=0.333333;AN=6;AO=40;CIGAR=1M1I3M1X;DP=189;DPB=197;DPRA=0;EPP=89.8692;EPPR=326.56;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1587;QR=5826;RO=149;RPL=0;RPP=89.8692;RPPR=326.56;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=149;SRP=326.56;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:72:42,30:42:1648:30:1194:-86.0703,0,-126.89 0|0:68:65,3:65:2538:3:120:0,-9.28214,-217.4 0|1:49:42,7:42:1640:7:273:-10.1814,0,-133.093 dDocent_Contig_3335 25 . T A 38.3135 . AB=0.125;ABP=61.6401;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=147;DPB=147;DPRA=0.969697;EPP=16.0391;EPPR=309.188;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=213;QR=5549;RO=141;RPL=0;RPP=16.0391;RPPR=309.188;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=141;SRP=309.188;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:47:47,0:47:1865:0:0:0,-14.1484,-168.063 0/1:48:42,6:42:1640:6:213:-5.05313,0,-133.385 0/0:52:52,0:52:2044:0:0:0,-15.6536,-184.157 dDocent_Contig_3336 119 . C T 97.9671 . AB=0.222222;ABP=21.1059;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=34;DPB=34;DPRA=1.92857;EPP=16.0391;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=211;QR=935;RO=28;RPL=0;RPP=16.0391;RPPR=63.8115;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:13,5:13:436:5:175:-10.6748,0,-34.1446 0/0:7:7,0:7:225:0:0:0,-2.10721,-20.5652 0/1:9:8,1:8:274:1:36:-0.889005,0,-22.2846 dDocent_Contig_3337 59 . A C 17400.6 . AB=0.191561;ABP=982.209;AC=6;AF=1;AN=6;AO=227;CIGAR=1X4M;DP=1185;DPB=1185;DPRA=0;EPP=495.935;EPPR=445.991;GTI=0;LEN=1;MEANALT=11.6667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=2.22045e-16;PAIRED=0.625551;PAIREDR=0.598039;PAO=0;PQA=0;PQR=0;PRO=0;QA=8620;QR=7435;RO=204;RPL=227;RPP=495.935;RPPR=445.991;RPR=0;RUN=1;SAF=227;SAP=495.935;SAR=0;SRF=204;SRP=445.991;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:399:86,164,29,85:86:3158:164,29,85:5944,1022,3222:-461.656,-6.00907,-214.796,-408.854,-185.476,-658.281,-223.38,0,-402.848,-455.951 1|1:431:73,216,26,75:73:2651:216,26,75:7988,936,2849:-648.435,-17.1564,-168.607,-603.296,-166.517,-811.941,-436.787,0,-586.145,-630.682 1|1:355:45,197,20,67:45:1626:197,20,67:7012,678,2549:-633.689,-76.3508,-149.764,-597.152,-158.988,-723.848,-438.175,0,-520.81,-550.724 dDocent_Contig_3338 9 . G T 1151.18 . AB=0.127273;ABP=733.059;AC=2;AF=0.333333;AN=6;AO=94;CIGAR=2X;DP=923;DPB=923;DPRA=0;EPP=207.129;EPPR=1362.68;GTI=0;LEN=1;MEANALT=6.66667;MQM=59.6489;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.0587372;PAO=0;PQA=0;PQR=0;PRO=0;QA=3645;QR=25568;RO=681;RPL=0;RPP=207.129;RPPR=1481.78;RPR=94;RUN=1;SAF=94;SAP=207.129;SAR=0;SRF=667;SRP=1362.68;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:308:221,34,22:221:8197:34,22:1328,850:-42.6491,0,-660.431,-42.0896,-603.575,-706.127 0|0:318:253,17,23:253:9516:17,23:648,891:0,-23.0191,-797.546,-8.06307,-734.561,-780.777 0|1:297:207,43,19:207:7855:43,19:1669,720:-74.7875,0,-631.14,-80.0089,-586.989,-718.368 dDocent_Contig_3339 54 . G A 157.727 . AB=0.243243;ABP=24.1968;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=84;DPB=84;DPRA=0.393617;EPP=22.5536;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=317;QR=2767;RO=75;RPL=9;RPP=22.5536;RPPR=165.871;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:13,3:13:481:3:111:-5.53744,0,-38.8162 0/0:47:47,0:47:1751:0:0:0,-14.1484,-157.851 0/1:21:15,6:15:535:6:206:-12.554,0,-42.1607 dDocent_Contig_3340 33 . T C 44530.5 . AB=0.9;ABP=169.779;AC=5;AF=0.833333;AN=6;AO=1305;CIGAR=1X;DP=1347;DPB=1347;DPRA=0;EPP=2819.44;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.981609;PAIREDR=0.952381;PAO=0;PQA=0;PQR=0;PRO=0;QA=51098;QR=1631;RO=42;RPL=4;RPP=2802.14;RPPR=94.2121;RPR=1301;RUN=1;SAF=1303;SAP=2819.44;SAR=2;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:502:14,488:14:545:488:19061:-1664.74,-101.732,0 1/1:725:16,709:16:616:709:27734:-2438.12,-162.477,0 0/1:120:12,108:12:470:108:4303:-351.102,0,-6.52419 dDocent_Contig_3341 66 . A C 2678.39 . AB=0.6;ABP=17.342;AC=3;AF=0.5;AN=6;AO=99;CIGAR=1X;DP=165;DPB=165;DPRA=0;EPP=217.986;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3559;QR=2374;RO=66;RPL=99;RPP=217.986;RPPR=146.327;RPR=0;RUN=1;SAF=99;SAP=217.986;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:34,22:34:1232:22:805:-55.9167,0,-94.3271 0/1:49:7,42:7:259:42:1531:-123.33,0,-8.91564 0/1:60:25,35:25:883:35:1223:-92.3098,0,-61.727 dDocent_Contig_3342 79 . G C 571.087 . AB=0.20438;ABP=107.003;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X;DP=137;DPB=137;DPRA=0;EPP=63.8115;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1122;QR=4318;RO=109;RPL=28;RPP=63.8115;RPPR=239.701;RPR=0;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:24,12:24:937:12:481:-32.8051,0,-73.7979 0/1:43:34,9:34:1345:9:360:-19.8177,0,-108.367 0/1:58:51,7:51:2036:7:281:-8.2026,0,-165.973 dDocent_Contig_3343 9 . G A 80.1333 . AB=0.225806;ABP=23.254;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=66;DPB=66;DPRA=0.442857;EPP=5.80219;EPPR=122.589;GTI=0;LEN=1;MEANALT=1;MQM=33.8571;MQMR=59.0169;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.966102;PAO=0;PQA=0;PQR=0;PRO=0;QA=276;QR=2236;RO=59;RPL=0;RPP=18.2106;RPPR=131.127;RPR=7;RUN=1;SAF=2;SAP=5.80219;SAR=5;SRF=58;SRP=122.589;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:13,5:13:488:5:196:-6.87491,0,-37.2739 0/1:13:11,2:11:418:2:80:-3.45591,0,-34.0571 0/0:35:35,0:35:1330:0:0:0,-10.536,-119.983 dDocent_Contig_3345 17 . G A 6286.72 . AB=0.766467;ABP=106.006;AC=4;AF=0.666667;AN=6;AO=192;CIGAR=1X;DP=233;DPB=233;DPRA=0;EPP=419.933;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7643;QR=1645;RO=41;RPL=0;RPP=419.933;RPPR=92.0407;RPR=192;RUN=1;SAF=192;SAP=419.933;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:66:2,64:2:74:64:2525:-220.372,-12.8422,0 0/1:80:18,62:18:717:62:2473:-198.635,0,-40.7725 0/1:87:21,66:21:854:66:2645:-211.983,0,-50.9798 dDocent_Contig_3346 28 . G C 310.475 . AB=0.162162;ABP=113.051;AC=1;AF=0.166667;AN=6;AO=29;CIGAR=1X;DP=325;DPB=325;DPRA=0;EPP=24.6501;EPPR=536.499;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.275862;PAIREDR=0.475694;PAO=0;PQA=0;PQR=0;PRO=0;QA=1147;QR=11305;RO=288;RPL=0;RPP=65.983;RPPR=628.394;RPR=29;RUN=1;SAF=23;SAP=24.6501;SAR=6;SRF=277;SRP=536.499;SRR=11;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:111:91,18:91:3586:18:720:-31.9683,0,-289.636 0/0:116:104,8:104:4033:8:304:0,-6.39229,-335.27 0/0:98:93,3:93:3686:3:123:0,-17.8317,-320.297 dDocent_Contig_3347 80 . C A 189.767 . AB=0.22;ABP=37.059;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=107;DPB=107;DPRA=3.95833;EPP=31.2394;EPPR=207.129;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=464;QR=3570;RO=94;RPL=13;RPP=31.2394;RPPR=207.129;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:446:0:0:0,-3.61236,-40.4824 0/0:45:43,2:43:1639:2:76:0,-6.33168,-140.558 0/1:50:39,11:39:1485:11:388:-20.1985,0,-118.869 dDocent_Contig_3348 18 . G T 95.3628 . AB=0.4;ABP=3.87889;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=22;DPB=22;DPRA=1.66667;EPP=11.6962;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=149;QR=725;RO=18;RPL=0;RPP=11.6962;RPPR=42.0968;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:241:0:0:0,-1.80618,-22.0667 0/1:10:6,4:6:244:4:149:-10.758,0,-19.3285 0/0:6:6,0:6:240:0:0:0,-1.80618,-21.9745 dDocent_Contig_3349 64 . C A 3925.69 . AB=0.747059;ABP=93.1392;AC=3;AF=0.5;AN=6;AO=127;CIGAR=1X;DP=170;DPB=170;DPRA=0;EPP=278.787;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4964;QR=1688;RO=43;RPL=127;RPP=278.787;RPPR=96.3836;RPR=0;RUN=1;SAF=127;SAP=278.787;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:17,42:17:672:42:1614:-127.737,0,-43.0482 0/1:51:8,43:8:319:43:1697:-137.608,0,-13.724 0/1:60:18,42:18:697:42:1653:-130.94,0,-44.989 dDocent_Contig_3352 98 . N A 1447.32 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=51;CIGAR=1X;DP=51;DPB=51;DPRA=0;EPP=113.755;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=6.77626e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1593;QR=0;RO=0;RPL=51;RPP=113.755;RPPR=0;RPR=0;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:23:0,23:0:0:23:749:-67.7153,-6.92369,0 1/1:16:0,16:0:0:16:498:-45.12,-4.81648,0 1/1:12:0,12:0:0:12:346:-31.4197,-3.61236,0 dDocent_Contig_3354 9 . G C 58.7866 . AB=0.16;ABP=28.1125;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1M5I1M2X1M1X1M1D7M;DP=34;DPB=35.0667;DPRA=1.38889;EPP=11.6962;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=1146;RO=30;RPL=0;RPP=11.6962;RPPR=68.1545;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:9:9,0:9:346:0:0:0,-2.70927,-31.4991 0|1:12:11,1:11:407:1:39:-0.284205,0,-33.3635 0|1:13:10,3:10:393:3:118:-7.0895,0,-31.8158 dDocent_Contig_3356 167 . G A 174.464 . AB=0.203704;ABP=44.1879;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=54;DPB=54;DPRA=0;EPP=26.8965;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=394;QR=1644;RO=43;RPL=11;RPP=26.8965;RPPR=96.3836;RPR=0;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=96.3836;SRR=43;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:18,3:18:686:3:103:-3.28627,0,-55.7438 0/1:18:16,2:16:619:2:62:-0.46729,0,-50.6272 0/1:15:9,6:9:339:6:229:-16.4604,0,-26.3433 dDocent_Contig_3357 18 . A G 373.399 . AB=0.272727;ABP=32.6213;AC=2;AF=0.333333;AN=6;AO=19;CIGAR=1X;DP=99;DPB=99;DPRA=0;EPP=44.2683;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=44.8421;MQMR=58.7125;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=698;QR=3147;RO=80;RPL=0;RPP=44.2683;RPPR=176.728;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:24,3:24:952:3:121:-2.80304,0,-77.7998 0/1:39:24,15:24:937:15:569:-36.8499,0,-72.8025 0/0:33:32,1:32:1258:1:8:0,-9.13399,-112.676 dDocent_Contig_3358 24 . A C 953.898 . AB=0.308333;ABP=41.3006;AC=3;AF=0.5;AN=6;AO=37;CIGAR=1X;DP=120;DPB=120;DPRA=0;EPP=83.3548;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1491;QR=3278;RO=83;RPL=0;RPP=83.3548;RPPR=183.243;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:50,7:50:1962:7:272:-7.68659,0,-159.623 0/1:36:23,13:23:922:13:528:-37.0294,0,-72.4483 0/1:27:10,17:10:394:17:691:-54.3905,0,-27.6858 dDocent_Contig_3359 54 . T C 47119.1 . AB=0.603734;ABP=273.318;AC=3;AF=0.5;AN=6;AO=1746;CIGAR=1X;DP=2892;DPB=2892;DPRA=0;EPP=384.717;EPPR=607.303;GTI=0;LEN=1;MEANALT=2;MQM=53.2738;MQMR=59.9175;NS=3;NUMALT=1;ODDS=0;PAIRED=0.274914;PAIREDR=0.351185;PAO=0;PQA=0;PQR=0;PRO=0;QA=66092;QR=43126;RO=1139;RPL=1628;RPP=2838.73;RPPR=2407.32;RPR=118;RUN=1;SAF=1114;SAP=291.948;SAR=632;SRF=851;SRP=607.303;SRR=288;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:860:375,481:375:14161:481:18216:-1281.72,0,-1015.76 0/1:1291:493,798:493:18863:798:30243:-2161.34,0,-1306.73 0/1:741:271,467:271:10102:467:17633:-1272.56,0,-686.358 dDocent_Contig_3360 14 . C T 107.23 . AB=0.0945946;ABP=636.845;AC=1;AF=0.166667;AN=6;AO=88;CIGAR=1X;DP=1858;DPB=1858;DPRA=0;EPP=194.1;EPPR=3840;GTI=0;LEN=1;MEANALT=1.66667;MQM=53.5341;MQMR=53.3345;NS=3;NUMALT=1;ODDS=0;PAIRED=0.988636;PAIREDR=0.912281;PAO=0;PQA=0;PQR=0;PRO=0;QA=3445;QR=69946;RO=1767;RPL=0;RPP=194.1;RPPR=3840;RPR=88;RUN=1;SAF=88;SAP=194.1;SAR=0;SRF=1767;SRP=3840;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:720:688,31:688:27089:31:1224:0,-114.661,-2244.54 0/1:444:402,42:402:15779:42:1629:-11.9449,0,-1252.54 0/0:694:677,15:677:27078:15:592:0,-156.441,-2312.33 dDocent_Contig_3361 99 . N C 11047.8 . AB=0.859107;ABP=328.962;AC=6;AF=1;AN=6;AO=398;CIGAR=2X;DP=456;DPB=2051;DPRA=0;EPP=867.256;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=45.0829;MQMR=0;NS=3;NUMALT=2;ODDS=0;PAIRED=0.987437;PAIREDR=0;PAO=3176;PQA=96291;PQR=0;PRO=0;QA=12227;QR=0;RO=0;RPL=398;RPP=867.256;RPPR=0;RPR=0;RUN=1;SAF=398;SAP=867.256;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:165:0,17,148:0:0:17,148:525,4435:-393.897,-351.774,-346.657,-44.5524,-2.42946,0 1|1:130:0,18,112:0:0:18,112:550,3479:-318.182,-274.635,-269.217,-43.5463,0,-9.83096 1|1:161:0,23,138:0:0:23,138:718,4313:-395.018,-337.336,-330.412,-57.682,0,-16.1398 dDocent_Contig_3366 23 . A G 1474.34 . AB=0.289617;ABP=73.3636;AC=2;AF=0.333333;AN=6;AO=53;CIGAR=1M1X5M;DP=183;DPB=183;DPRA=0;EPP=118.098;EPPR=137.642;GTI=0;LEN=1;MEANALT=9.66667;MQM=56.0755;MQMR=59.9032;NS=3;NUMALT=6;ODDS=0;PAIRED=0;PAIREDR=0.919355;PAO=0;PQA=0;PQR=0;PRO=0;QA=2044;QR=2387;RO=62;RPL=0;RPP=118.098;RPPR=137.642;RPR=53;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:72:25,0,2,7,0,15,13:25:967:0,2,7,0,15,13:0,76,278,0,583,497:-39.8378,-47.3635,-126.792,-43.1711,-122.599,-121.996,-25.1954,-104.626,-100.433,-102.519,-47.3635,-126.792,-122.599,-104.626,-126.792,0,-79.4344,-75.2413,-57.2676,-79.4344,-74.919,-6.76979,-86.2025,-82.0093,-64.0359,-86.2025,-38.8432,-82.2891 0|1:66:17,4,5,0,0,30,0:17:645:4,5,0,0,30,0:154,194,0,0,1176,0:-91.2275,-83.6985,-135.385,-85.5016,-125.743,-136.883,-96.345,-136.589,-138.389,-149.234,-96.345,-136.589,-138.389,-149.234,-149.234,0,-40.2684,-42.0758,-52.918,-52.918,-43.8871,-96.345,-136.589,-138.389,-149.234,-149.234,-52.918,-149.234 0|0:45:20,0,0,0,8,8,0:20:775:0,0,0,8,8,0:0,0,0,317,285,0:-20.0856,-26.1062,-89.7807,-26.1062,-89.7807,-89.7807,-26.1062,-89.7807,-89.7807,-89.7807,0,-63.6848,-63.6848,-63.6848,-61.2766,-3.18039,-66.854,-66.854,-66.854,-40.7581,-64.4458,-26.1062,-89.7807,-89.7807,-89.7807,-63.6848,-66.854,-89.7807 dDocent_Contig_3368 11 . A G 37.8276 . AB=0.157895;ABP=22.325;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=46;DPB=46;DPRA=1.40741;EPP=9.52472;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.976744;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=1700;RO=43;RPL=0;RPP=9.52472;RPPR=96.3836;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:674:0:0:0,-5.11751,-60.9896 0/1:19:16,3:16:634:3:115:-5.00453,0,-51.672 0/0:10:10,0:10:392:0:0:0,-3.0103,-35.6351 dDocent_Contig_3370 30 . T C 89.9462 . AB=0.111111;ABP=156.702;AC=2;AF=0.333333;AN=6;AO=21;CIGAR=1X;DP=227;DPB=227;DPRA=0;EPP=48.6112;EPPR=445.991;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.843137;PAO=0;PQA=0;PQR=0;PRO=0;QA=812;QR=6693;RO=204;RPL=0;RPP=48.6112;RPPR=445.991;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=204;SRP=445.991;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:59,7:59:1915:7:273:-4.84431,0,-152.527 0/1:50:44,6:44:1389:6:235:-6.46901,0,-110.229 0/0:110:101,8:101:3389:8:304:0,-5.20894,-277.527 dDocent_Contig_3371 30 . G A 347.811 . AB=0.220779;ABP=55.1538;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=12M1X;DP=126;DPB=126.462;DPRA=0.785714;EPP=39.9253;EPPR=220.158;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=650;QR=3901;RO=100;RPL=0;RPP=39.9253;RPPR=220.158;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:49:46,0,0:46:1797:0,0:0,0:0,-13.8474,-161.57,-13.8474,-161.57,-161.57 0|1:31:24,1,4:24:933:1,4:41,153:-5.37404,-9.20424,-85.6123,0,-73.361,-75.5421 0|1:46:30,3,13:30:1171:3,13:123,497:-31.7258,-30.5993,-125.958,0,-86.0841,-92.3247 dDocent_Contig_3372 8 . C A 1223.22 . AB=0.125;ABP=90.9549;AC=4;AF=0.666667;AN=6;AO=9;CIGAR=1M1X8M;DP=117;DPB=117;DPRA=0;EPP=22.5536;EPPR=72.4974;GTI=0;LEN=1;MEANALT=5.5;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=314;QR=1148;RO=32;RPL=0;RPP=22.5536;RPPR=72.4974;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:39:5,2,2,19,7,4:5:174:2,2,19,7,4:71,79,724,265,125:-65.4923,-61.2135,-74.7534,-60.495,-68.8531,-74.0353,-7.59477,-15.9523,-15.232,-16.0176,-45.2701,-53.6278,-52.9092,0,-57.3048,-56.9651,-65.3222,-64.6038,-11.708,-49.3796,-69.9018 0|1:33:11,3,2,6,5,5:11:400:3,2,6,5,5:111,75,224,191,189:-15.0274,-9.25912,-41.0166,-12.1953,-35.776,-44.2543,0,-23.5795,-26.5161,-30.8537,-2.6655,-26.2461,-29.1828,-16.986,-33.8215,-2.8454,-26.4257,-29.3623,-17.1656,-19.8322,-34.001 0|1:45:16,2,0,16,6,0:16:574:2,0,16,6,0:76,0,613,231,0:-45.5182,-44.1006,-90.3129,-50.3347,-90.9149,-97.1487,0,-40.5916,-46.8267,-42.0102,-31.3618,-71.9438,-78.1779,-27.8504,-76.3717,-50.3347,-90.9149,-97.1487,-46.8267,-78.1779,-97.1487 dDocent_Contig_3373 69 . T C 238.017 . AB=0.223881;ABP=47.3796;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=100;DPB=100;DPRA=0;EPP=11.6962;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=542;QR=2827;RO=84;RPL=16;RPP=37.7539;RPPR=185.414;RPR=0;RUN=1;SAF=12;SAP=11.6962;SAR=4;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:20,8:20:684:8:277:-16.8381,0,-53.4516 0/1:39:32,7:32:1071:7:230:-9.28236,0,-84.953 0/0:33:32,1:32:1072:1:35:0,-6.43536,-93.282 dDocent_Contig_3374 25 . G A 611.156 . AB=0.245283;ABP=62.7463;AC=1;AF=0.166667;AN=6;AO=35;CIGAR=1X;DP=301;DPB=301;DPRA=0;EPP=79.0118;EPPR=580.622;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.962406;PAO=0;PQA=0;PQR=0;PRO=0;QA=1387;QR=10531;RO=266;RPL=0;RPP=79.0118;RPPR=580.622;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=266;SRP=580.622;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:77:76,1:76:2970:1:39:0,-19.2827,-263.511 0/0:118:110,8:110:4345:8:304:0,-7.80819,-363.313 0/1:106:80,26:80:3216:26:1044:-62.3374,0,-257.593 dDocent_Contig_3375 12 . C T 154.595 . AB=0;ABP=0;AC=0;AF=0;AN=6;AO=5;CIGAR=1X3M1X;DP=173;DPB=173;DPRA=1.47826;EPP=13.8677;EPPR=322.217;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=59.7007;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.986395;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=5798;RO=147;RPL=0;RPP=13.8677;RPPR=322.217;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=147;SRP=322.217;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:59:48,0,10:48:1888:0,10:0,374:-16.3797,-30.8291,-186.162,0,-155.548,-152.538 0|0:46:41,0,2:41:1617:0,2:0,76:0,-12.3422,-143.233,-6.10783,-137,-136.398 0|0:68:58,5,1:58:2293:5,1:200,39:0,-0.984737,-188.174,-14.255,-186.473,-202.647 dDocent_Contig_3376 7 . A T 83.2298 . AB=0.166667;ABP=55.1256;AC=1;AF=0.166667;AN=6;AO=18;CIGAR=1X1M1X;DP=147;DPB=147;DPRA=0;EPP=42.0968;EPPR=267.93;GTI=0;LEN=1;MEANALT=3;MQM=32.0556;MQMR=53.3607;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.598361;PAO=0;PQA=0;PQR=0;PRO=0;QA=676;QR=4629;RO=122;RPL=0;RPP=42.0968;RPPR=267.93;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=122;SRP=267.93;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:48:40,5:40:1509:5:187:0,-0.637392,-118.694 0|0:45:38,4:38:1441:4:152:0,-1.24356,-114.691 0|1:54:44,9:44:1679:9:337:-9.54316,0,-124.523 dDocent_Contig_3377 28 . A G 212.553 . AB=0.136842;ABP=220.66;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X;DP=190;DPB=190;DPRA=0;EPP=59.4686;EPPR=359.132;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=901;QR=6115;RO=164;RPL=0;RPP=59.4686;RPPR=359.132;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=164;SRP=359.132;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:57,12:57:2124:12:413:-16.7222,0,-170.624 0/1:67:60,7:60:2221:7:238:-1.58126,0,-179.954 0/1:54:47,7:47:1770:7:250:-6.58266,0,-143.303 dDocent_Contig_3378 14 . C A 236.369 . AB=0.147826;ABP=126.898;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=115;DPB=115;DPRA=0;EPP=39.9253;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=676;QR=3946;RO=98;RPL=0;RPP=39.9253;RPPR=215.815;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:16,5:16:640:5:199:-11.9658,0,-51.6102 0/1:21:18,3:18:721:3:123:-5.14316,0,-58.8948 0/1:73:64,9:64:2585:9:354:-10.2446,0,-210.795 dDocent_Contig_3379 82 . T C 138.062 . AB=0.4;ABP=4.31318;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=44;DPB=44;DPRA=1.03448;EPP=16.0391;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=210;QR=1273;RO=38;RPL=6;RPP=16.0391;RPPR=85.5263;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:9,6:9:293:6:210:-14.727,0,-22.1706 0/0:22:22,0:22:742:0:0:0,-6.62266,-67.0939 0/0:7:7,0:7:238:0:0:0,-2.10721,-21.7525 dDocent_Contig_3380 98 . N T 101.295 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:59:-5.60426,-0.60206,0 1/1:3:0,2:0:0:2:46:-4.21984,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_3381 126 . C T 59.799 . AB=0.375;ABP=4.09604;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=27;DPB=27;DPRA=0.842105;EPP=9.52472;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=103;QR=788;RO=24;RPL=0;RPP=9.52472;RPPR=55.1256;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:379:0:0:0,-3.31133,-34.442 0/0:8:8,0:8:236:0:0:0,-2.40824,-21.5303 0/1:8:5,3:5:173:3:103:-7.20173,0,-13.5019 dDocent_Contig_3382 32 . T A 37.7656 . AB=0.111111;ABP=62.1226;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=65;DPB=65;DPRA=1.125;EPP=13.8677;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=2397;RO=60;RPL=0;RPP=13.8677;RPPR=133.299;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:18,3:18:724:3:118:-4.68088,0,-59.1644 0/0:20:20,0:20:798:0:0:0,-6.0206,-72.1387 0/1:24:22,2:22:875:2:81:-0.461014,0,-71.8332 dDocent_Contig_3384 51 . C A 517.927 . AB=0.252747;ABP=51.3315;AC=3;AF=0.5;AN=6;AO=23;CIGAR=1X;DP=91;DPB=91;DPRA=0;EPP=52.9542;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=909;QR=2661;RO=68;RPL=23;RPP=52.9542;RPPR=150.67;RPR=0;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:31,14:31:1227:14:557:-36.927,0,-97.1601 0/1:23:17,6:17:656:6:234:-14.5036,0,-52.4382 0/1:23:20,3:20:778:3:118:-4.07851,0,-63.4132 dDocent_Contig_3385 59 . C A 675.611 . AB=0.360465;ABP=17.5541;AC=2;AF=0.333333;AN=6;AO=33;CIGAR=1X;DP=140;DPB=140;DPRA=0;EPP=74.6689;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1126;QR=3726;RO=107;RPL=33;RPP=74.6689;RPPR=235.358;RPR=0;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:54:52,2:52:1814:2:69:0,-9.70308,-156.992 0/1:33:19,14:19:662:14:458:-31.5955,0,-49.9716 0/1:53:36,17:36:1250:17:599:-38.2843,0,-96.8503 dDocent_Contig_3386 96 . T A 103.413 . AB=0.384615;ABP=4.51363;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=34;DPB=34;DPRA=1.2381;EPP=13.8677;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=165;QR=1005;RO=29;RPL=5;RPP=13.8677;RPPR=65.983;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:8,5:8:277:5:165:-11.2621,0,-21.3536 0/0:10:10,0:10:346:0:0:0,-3.0103,-31.4744 0/0:11:11,0:11:382:0:0:0,-3.31133,-34.7143 dDocent_Contig_3387 9 . T G 69870.7 . AB=0.302648;ABP=807.816;AC=6;AF=1;AN=6;AO=720;CIGAR=3M1X;DP=2379;DPB=2828.5;DPRA=0;EPP=1566.47;EPPR=55.1256;GTI=0;LEN=1;MEANALT=9.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.959722;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=27234;QR=907;RO=24;RPL=0;RPP=1566.47;RPPR=55.1256;RPR=720;RUN=1;SAF=720;SAP=1566.47;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:785:11,501,251:11:417:501,251:18864,9434:-2281.14,-738.715,-622.091,-1511.58,0,-1470.21 1|1:604:10,389,191:10:378:389,191:14642,7204:-1756.18,-559.45,-473.335,-1168.81,0,-1142.3 1|1:990:3,669,278:3:112:669,278:25527,10596:-2953.47,-860.099,-667.88,-2085.17,0,-2010.66 dDocent_Contig_3388 120 . T C 26251.1 . AB=0;ABP=0;AC=0;AF=0;AN=6;AO=27;CIGAR=1X3M1X1M1X2M1X2M1X;DP=976;DPB=977.615;DPRA=0;EPP=3.09072;EPPR=57.0725;GTI=0;LEN=1;MEANALT=16.3333;MQM=41.037;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.913793;PAO=0;PQA=0;PQR=0;PRO=10.5;QA=1041;QR=2120;RO=58;RPL=13;RPP=3.09072;RPPR=57.0725;RPR=14;RUN=1;SAF=0;SAP=61.6401;SAR=27;SRF=0;SRP=128.956;SRR=58;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:348:23,7,283:23:871:7,283:262,11157:-924.778,-914.256,-983.556,-13.7655,-67.7478,0 0|0:410:27,8,337:27:949:8,337:313,13128:-1094.98,-1080.28,-1155.11,-24.2102,-78.6179,0 0|0:218:8,12,177:8:300:12,177:466,7028:-604.875,-573.904,-594.864,-28.7044,-19.9054,0 dDocent_Contig_3391 18 . C A 1892.43 . AB=0.139535;ABP=51.5402;AC=4;AF=0.666667;AN=6;AO=6;CIGAR=1X2M;DP=104;DPB=104;DPRA=0;EPP=16.0391;EPPR=87.6977;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=1531;RO=39;RPL=0;RPP=16.0391;RPPR=87.6977;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:43:2,35,6:2:80:35,6:1349,238:-123.14,-12.9979,-9.05288,-104.149,0,-108.934 0|1:27:18,9,0:18:705:9,0:362,0:-24.8167,0,-55.6477,-30.2353,-58.357,-88.194 0|1:34:19,15,0:19:746:15,0:610,0:-45.0028,0,-57.2242,-50.7224,-61.7397,-112.062 dDocent_Contig_3392 138 . T C 89.8278 . AB=0.184211;ABP=35.9253;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=55;DPB=55;DPRA=1.11765;EPP=18.2106;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=1760;RO=48;RPL=0;RPP=18.2106;RPPR=107.241;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=107.241;SRR=48;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:17,4:17:631:4:129:-5.60133,0,-50.7897 0/1:17:14,3:14:485:3:116:-5.70019,0,-38.8519 0/0:17:17,0:17:644:0:0:0,-5.11751,-58.2941 dDocent_Contig_3393 13 . C T 135.773 . AB=0.121951;ABP=155.702;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=142;DPB=142;DPRA=3.23684;EPP=35.5824;EPPR=278.787;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=580;QR=5023;RO=127;RPL=0;RPP=35.5824;RPPR=278.787;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=127;SRP=278.787;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:70:62,8:62:2427:8:312:-7.36968,0,-197.519 0/1:53:46,7:46:1835:7:268:-8.52638,0,-149.403 0/0:19:19,0:19:761:0:0:0,-5.71957,-68.8122 dDocent_Contig_3394 14 . C A 92.8188 . AB=0.307692;ABP=7.18621;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=39;DPB=39;DPRA=1;EPP=11.6962;EPPR=62.6327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=52.9714;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=0.828571;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=1390;RO=35;RPL=0;RPP=11.6962;RPPR=79.0118;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=33;SRP=62.6327;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:487:0:0:0,-3.61236,-44.1811 0/1:13:9,4:9:362:4:156:-10.5037,0,-25.6558 0/0:14:14,0:14:541:0:0:0,-4.21442,-41.7473 dDocent_Contig_3395 15 . C G 679.354 . AB=0.428571;ABP=5.80219;AC=2;AF=0.333333;AN=6;AO=27;CIGAR=1X;DP=78;DPB=78;DPRA=2.1;EPP=61.6401;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=984;QR=2002;RO=51;RPL=0;RPP=61.6401;RPPR=113.755;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:582:0:0:0,-4.51545,-52.7198 0/1:29:16,13:16:614:13:467:-33.6262,0,-46.8687 0/1:34:20,14:20:806:14:517:-36.6279,0,-62.6225 dDocent_Contig_3396 114 . C A 128.828 . AB=0.169492;ABP=58.9901;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=133;DPB=133;DPRA=1.59459;EPP=24.725;EPPR=270.101;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=347;QR=4139;RO=123;RPL=0;RPP=24.725;RPPR=270.101;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=270.101;SRR=123;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:49,10:49:1616:10:347:-13.8037,0,-127.955 0/0:35:35,0:35:1151:0:0:0,-10.536,-103.881 0/0:39:39,0:39:1372:0:0:0,-11.7402,-123.779 dDocent_Contig_3397 19 . G C 54.2541 . AB=0.25;ABP=9.52472;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=39;DPB=39;DPRA=1.27273;EPP=11.6962;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=149;QR=1357;RO=35;RPL=0;RPP=11.6962;RPPR=79.0118;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:15,1:15:581:1:39:0,-0.919915,-48.7268 0/0:11:11,0:11:421:0:0:0,-3.31133,-38.2341 0/1:12:9,3:9:355:3:110:-6.64656,0,-28.6949 dDocent_Contig_3398 31 . T C 50555.1 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=1497;CIGAR=2M1X;DP=1584;DPB=1584;DPRA=0;EPP=3245.02;EPPR=178.9;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.952572;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=59344;QR=3114;RO=81;RPL=0;RPP=3253.7;RPPR=178.9;RPR=1497;RUN=1;SAF=1496;SAP=3245.02;SAR=1;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:542:29,512:29:1101:512:20262:-1722.57,-63.882,0 1|1:584:30,551:30:1143:551:21853:-1861.83,-72.0847,0 1|1:458:22,434:22:870:434:17229:-1470.64,-59.0594,0 dDocent_Contig_3400 23 . T G 503.609 . AB=0.194245;ABP=115.88;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1X;DP=139;DPB=139;DPRA=0;EPP=61.6401;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1054;QR=4437;RO=112;RPL=0;RPP=61.6401;RPPR=246.215;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:43,6:43:1715:6:230:-6.3098,0,-139.826 0/1:55:40,15:40:1555:15:592:-37.0622,0,-123.631 0/1:35:29,6:29:1167:6:232:-10.7055,0,-94.7718 dDocent_Contig_3401 13 . G T 9846.56 . AB=0.258112;ABP=692.142;AC=3;AF=0.5;AN=6;AO=350;CIGAR=2X2M;DP=1356;DPB=1356.25;DPRA=0;EPP=428.892;EPPR=1025.77;GTI=0;LEN=1;MEANALT=16.3333;MQM=58.8686;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.634286;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=12276;QR=16713;RO=471;RPL=0;RPP=763.026;RPPR=1025.77;RPR=350;RUN=1;SAF=306;SAP=428.892;SAR=44;SRF=471;SRP=1025.77;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:558:177,176,137:177:6295:176,137:6280,4753:-458.391,0,-459.996,-126.682,-127.985,-598.414 0|1:440:145,101,126:145:5053:101,126:3627,4351:-309.669,-60.8015,-441.298,0,-118.382,-372.968 0|1:358:149,89,87:149:5365:89,87:3262,3172:-220.312,0,-410.928,-6.18822,-178.74,-417.718 dDocent_Contig_3402 96 . C A 86.4484 . AB=0.4;ABP=3.87889;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=24;DPB=24;DPRA=1.42857;EPP=11.6962;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=136;QR=675;RO=20;RPL=4;RPP=11.6962;RPPR=46.4397;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:6,4:6:191:4:136:-9.56556,0,-14.4926 0/0:7:7,0:7:243:0:0:0,-2.10721,-22.2088 0/0:7:7,0:7:241:0:0:0,-2.10721,-22.0264 dDocent_Contig_3403 10 . G A 427.064 . 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AB=0.381579;ABP=12.2676;AC=3;AF=0.5;AN=6;AO=29;CIGAR=1X;DP=76;DPB=76;DPRA=0;EPP=65.983;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=989;QR=1594;RO=47;RPL=29;RPP=65.983;RPPR=105.07;RPR=0;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:19,11:19:633:11:353:-23.0468,0,-48.253 0/1:18:9,9:9:306:9:322:-23.9057,0,-22.4519 0/1:28:19,9:19:655:9:314:-20.1684,0,-50.8443 dDocent_Contig_3409 24 . G A 10874.7 . AB=0.398039;ABP=95.1148;AC=3;AF=0.5;AN=6;AO=406;CIGAR=1X;DP=1020;DPB=1020;DPRA=0;EPP=816.51;EPPR=1084.15;GTI=0;LEN=1;MEANALT=1.66667;MQM=57.8695;MQMR=58.7778;NS=3;NUMALT=1;ODDS=0;PAIRED=0.463054;PAIREDR=0.406863;PAO=0;PQA=0;PQR=0;PRO=0;QA=15816;QR=24086;RO=612;RPL=0;RPP=884.628;RPPR=1331.95;RPR=406;RUN=1;SAF=398;SAP=816.51;SAR=8;SRF=582;SRP=1084.15;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:470:259,210:259:10117:210:8241:-596.263,0,-745.029 0/1:296:206,89:206:8112:89:3458:-206.266,0,-635.669 0/1:254:147,107:147:5857:107:4117:-288.657,0,-449.095 dDocent_Contig_3410 1 . N G 267.536 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:39:-3.89656,-0.30103,0 1/1:3:0,3:0:0:3:121:-11.2802,-0.90309,0 1/1:3:0,3:0:0:3:119:-11.0954,-0.90309,0 dDocent_Contig_3413 11 . A C 4176.62 . AB=0.560185;ABP=9.8062;AC=5;AF=0.833333;AN=6;AO=121;CIGAR=1M1X1M;DP=216;DPB=216;DPRA=0;EPP=265.758;EPPR=83.3548;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0.991736;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4788;QR=1432;RO=37;RPL=0;RPP=265.758;RPPR=83.3548;RPR=121;RUN=1;SAF=121;SAP=265.758;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:89:18,2,24,0,45:18:692:2,24,0,45:79,954,0,1763:-161.285,-160.203,-216.405,-88.1579,-138.461,-137.737,-166.704,-217.007,-144.962,-223.508,-21.7494,-72.0494,0,-78.5505,-65.0041 1|1:55:6,6,11,3,29:6:231:6,11,3,29:240,434,118,1129:-107.711,-89.7469,-106.906,-73.8081,-73.0024,-89.4614,-99.8099,-99.0047,-83.0657,-117.872,-16.7459,-15.9381,0,-26.002,-26.9789 0|1:72:13,6,6,0,47:13:509:6,6,0,47:246,229,0,1896:-152.383,-135.991,-176.035,-137.515,-159.06,-177.559,-156.296,-177.841,-179.365,-198.147,0,-21.5403,-23.0702,-41.8499,-27.7015 dDocent_Contig_3416 18 . C T 137.479 . AB=0.0971787;ABP=452.614;AC=2;AF=0.333333;AN=6;AO=36;CIGAR=1X;DP=446;DPB=446;DPRA=0;EPP=81.1833;EPPR=893.314;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.1171;NS=3;NUMALT=1;ODDS=2.77556e-17;PAIRED=0.666667;PAIREDR=0.790244;PAO=0;PQA=0;PQR=0;PRO=0;QA=1432;QR=16208;RO=410;RPL=0;RPP=81.1833;RPPR=893.314;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=410;SRP=893.314;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:117:107,10:107:4200:10:397:-0.868805,0,-340.082 0/1:202:181,21:181:7125:21:838:-14.9289,0,-579.401 0/0:127:122,5:122:4883:5:197:0,-20.1268,-418.326 dDocent_Contig_3417 82 . C T 158.415 . AB=0.141791;ABP=152.356;AC=1;AF=0.166667;AN=6;AO=19;CIGAR=1X;DP=284;DPB=284;DPRA=1.78667;EPP=44.2683;EPPR=578.45;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=631;QR=8999;RO=265;RPL=19;RPP=44.2683;RPPR=578.45;RPR=0;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=265;SRP=578.45;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:134:115,19:115:3913:19:631:-16.7623,0,-312.049 0/0:76:76,0:76:2559:0:0:0,-22.8783,-230.57 0/0:74:74,0:74:2527:0:0:0,-22.2762,-227.688 dDocent_Contig_3418 17 . T A 797.951 . AB=0.220238;ABP=117.219;AC=3;AF=0.5;AN=6;AO=37;CIGAR=1X3M;DP=168;DPB=168;DPRA=0;EPP=83.3548;EPPR=278.787;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1469;QR=5087;RO=127;RPL=0;RPP=83.3548;RPPR=278.787;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=127;SRP=278.787;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:42:38,0,4:38:1521:0,4:0,159:-2.0487,-13.4878,-138.789,0,-125.699,-124.495 0|1:56:43,4,9:43:1724:4,9:158,341:-14.9971,-14.9345,-155.79,0,-129.046,-139.338 0|1:70:46,0,24:46:1842:0,24:0,969:-66.4348,-80.2822,-232.024,0,-152.144,-144.919 dDocent_Contig_3419 155 . T A 60.0529 . AB=0.272727;ABP=7.94546;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=27;DPB=27;DPRA=1.375;EPP=9.52472;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=113;QR=906;RO=24;RPL=0;RPP=9.52472;RPPR=55.1256;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:256:0:0:0,-2.10721,-23.391 0/1:11:8,3:8:307:3:113:-7.22708,0,-24.6801 0/0:9:9,0:9:343:0:0:0,-2.70927,-31.2242 dDocent_Contig_3420 131 . C A 126.058 . AB=0.185185;ABP=49.4959;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=54;DPB=54;DPRA=0;EPP=24.725;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=350;QR=1492;RO=44;RPL=0;RPP=24.725;RPPR=98.5551;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=98.5551;SRR=44;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:22,3:22:714:3:101:-1.89594,0,-57.0319 0/1:11:7,4:7:253:4:140:-9.63333,0,-19.8084 0/1:18:15,3:15:525:3:109:-4.74946,0,-42.1576 dDocent_Contig_3422 114 . A C 85.0719 . AB=0.189189;ABP=34.0565;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=125;DPB=125;DPRA=0.840909;EPP=18.2106;EPPR=257.073;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=225;QR=3826;RO=117;RPL=0;RPP=18.2106;RPPR=257.073;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=257.073;SRR=117;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:30,7:30:948:7:225:-9.42801,0,-74.4724 0/0:39:38,0:38:1246:0:0:0,-11.4391,-112.191 0/0:49:49,0:49:1632:0:0:0,-14.7505,-147.165 dDocent_Contig_3423 118 . T C 76.1055 . AB=0.105263;ABP=54.4399;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X4M1X;DP=89;DPB=89;DPRA=0;EPP=3.32051;EPPR=159.356;GTI=0;LEN=1;MEANALT=1.66667;MQM=27.7143;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=165;QR=2331;RO=72;RPL=0;RPP=18.2106;RPPR=159.356;RPR=7;RUN=1;SAF=3;SAP=3.32051;SAR=4;SRF=0;SRP=159.356;SRR=72;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:30:26,2,2:26:838:2,2:70,67:0,-5.28203,-72.2438,-2.37878,-67.4735,-69.4824 0|1:38:26,8,4:26:853:8,4:275,64:-8.83237,0,-66.6823,-13.2116,-65.625,-80.9761 0|0:21:20,0,1:20:640:0,1:0,34:0,-6.0206,-57.5746,-3.01892,-54.9027,-54.6016 dDocent_Contig_3424 13 . T C 7383.26 . AB=0.0793991;ABP=719.056;AC=3;AF=0.5;AN=6;AO=37;CIGAR=1X3M1X;DP=466;DPB=475.6;DPRA=0;EPP=83.3548;EPPR=144.282;GTI=0;LEN=1;MEANALT=9.66667;MQM=57.8649;MQMR=57.1159;NS=3;NUMALT=4;ODDS=0;PAIRED=0.945946;PAIREDR=0.289855;PAO=0;PQA=0;PQR=0;PRO=0;QA=1424;QR=2726;RO=69;RPL=0;RPP=83.3548;RPPR=152.842;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=68;SRP=144.282;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:158:17,77,18,9,20:17:670:77,18,9,20:2995,697,357,765:-245.398,-9.81128,-39.5915,-193.261,-5.51432,-240.801,-222.162,-34.4162,-217.866,-272.411,-187.747,0,-183.45,-212.351,-234.684 0|1:162:31,79,8,5,25:31:1209:79,8,5,25:3110,285,199,970:-246.484,0,-75.5745,-232.602,-76.1427,-329.545,-241.045,-84.5852,-317.182,-338.891,-176.135,-19.6723,-252.273,-260.716,-267.961 1|0:146:21,78,11,8,23:21:847:78,11,8,23:3085,442,322,923:-250.161,-5.99855,-51.7257,-222.277,-41.0011,-288.17,-231.023,-49.7459,-266.021,-297.818,-181.28,0,-216.279,-225.024,-243.56 dDocent_Contig_3425 56 . A C 351.603 . AB=0.225352;ABP=49.5287;AC=1;AF=0.166667;AN=6;AO=18;CIGAR=1X;DP=162;DPB=162;DPRA=1.3;EPP=42.0968;EPPR=315.702;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=714;QR=5664;RO=144;RPL=18;RPP=42.0968;RPPR=315.702;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=144;SRP=315.702;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:45:45,0:45:1748:0:0:0,-13.5463,-157.539 0/0:46:44,2:44:1732:2:76:0,-6.63312,-148.894 0/1:71:55,16:55:2184:16:638:-36.3821,0,-175.371 dDocent_Contig_3426 23 . G A 2187.15 . AB=0.626087;ABP=18.8904;AC=3;AF=0.5;AN=6;AO=72;CIGAR=1X;DP=115;DPB=115;DPRA=0;EPP=159.356;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2846;QR=1698;RO=43;RPL=0;RPP=159.356;RPPR=96.3836;RPR=72;RUN=1;SAF=72;SAP=159.356;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:8,35:8:317:35:1371:-110.709,0,-15.9521 0/1:23:12,11:12:466:11:437:-32.7603,0,-35.3622 0/1:49:23,26:23:915:26:1038:-78.9623,0,-67.9022 dDocent_Contig_3427 120 . T C 31.0528 . AB=0.3;ABP=9.95901;AC=2;AF=0.5;AN=4;AO=6;CIGAR=1X;DP=20;DPB=20;DPRA=0;EPP=16.0391;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=21;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=192;QR=449;RO=14;RPL=0;RPP=16.0391;RPPR=33.4109;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=33.4109;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:6,2:6:202:2:68:-1.54073,0,-16.1023 0/1:12:8,4:8:247:4:124:-3.92508,0,-18.9189 ./.:.:.:.:.:.:.:. dDocent_Contig_3428 17 . G C 164.907 . AB=0.152778;ABP=78.4086;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X1M1X;DP=88;DPB=88;DPRA=2.25;EPP=26.8965;EPPR=161.528;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=437;QR=2890;RO=73;RPL=0;RPP=26.8965;RPPR=161.528;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:28:21,6,1:21:813:6,1:235,41:-12.9865,0,-64.9517,-15.9214,-63.3728,-82.3964 0|1:44:36,5,3:36:1437:5,3:202,118:-5.82296,0,-116.853,-6.95844,-108.653,-124.404 0|0:16:16,0,0:16:640:0,0:0,0:0,-4.81648,-57.9364,-4.81648,-57.9364,-57.9364 dDocent_Contig_3430 114 . C A 266.61 . 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AB=0.333333;ABP=5.9056;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=32;DPB=32;DPRA=1.2;EPP=11.6962;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=1103;RO=28;RPL=4;RPP=11.6962;RPPR=63.8115;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:504:0:0:0,-3.91339,-45.7004 0/0:7:7,0:7:281:0:0:0,-2.10721,-25.6611 0/1:12:8,4:8:318:4:161:-11.2625,0,-25.3734 dDocent_Contig_3434 19 . G A 3713.89 . 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C T 1104.01 . AB=0.0581395;ABP=148.852;AC=0;AF=0;AN=6;AO=5;CIGAR=1X1M3X11M;DP=208;DPB=209.562;DPRA=0;EPP=13.8677;EPPR=94.2121;GTI=0;LEN=1;MEANALT=13;MQM=60;MQMR=60;NS=3;NUMALT=8;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=1612;RO=42;RPL=0;RPP=13.8677;RPPR=94.2121;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:68:11,1,0,2,7,9,20,9,4:11:430:1,0,2,7,9,20,9,4:39,0,81,273,341,680,348,158:-49.4529,-49.5579,-84.6131,-52.7643,-84.9141,-88.1203,-46.0837,-78.2339,-81.4401,-80.838,-30.3199,-62.4708,-65.6771,-58.9966,-63.5698,-24.988,-57.1388,-60.345,-53.6646,-37.9012,-57.6357,0,-32.1469,-35.3529,-28.673,-12.9116,-7.58119,-29.3323,-24.1988,-56.3499,-59.5561,-52.8757,-37.1121,-31.7802,-6.79155,-56.8468,-39.7609,-71.9114,-75.1176,-68.4373,-52.674,-47.3419,-22.3511,-46.553,-73.9135 0|0:54:9,2,0,4,8,10,12,0,3:9:352:2,0,4,8,10,12,0,3:73,0,160,305,327,327,0,119:-22.8807,-19.6287,-47.9758,-25.5899,-48.5779,-54.5387,-12.4047,-35.394,-41.355,-40.1509,-0.563367,-23.554,-29.5151,-16.3302,-27.1068,0,-22.9885,-28.9491,-15.7652,-3.9257,-25.9388,-1.78228,-24.7668,-30.7263,-17.5444,-5.70743,-5.14821,-27.114,-25.5899,-48.5779,-54.5387,-41.355,-29.5151,-28.9491,-30.7263,-54.5387,-15.7905,-38.7794,-44.7403,-31.5562,-19.7159,-19.1506,-20.9293,-44.7403,-43.8372 0|0:86:22,5,5,0,12,15,12,0,6:22:830:5,5,0,12,15,12,0,6:168,200,0,458,588,312,0,246:-41.744,-34.7627,-101.282,-31.8867,-86.309,-98.4077,-48.3667,-102.787,-99.9128,-116.391,-10.7838,-65.2081,-62.3328,-78.8119,-75.1995,0,-54.4264,-51.5509,-68.0304,-30.4485,-63.515,-26.8563,-81.2722,-78.3969,-94.8742,-57.298,-46.517,-91.2619,-48.3667,-102.787,-99.9128,-116.391,-78.8119,-68.0304,-94.8742,-116.391,-28.0556,-82.4785,-79.6036,-96.0824,-58.5021,-47.7201,-74.5666,-96.0824,-94.2762 dDocent_Contig_3441 14 . G A 173.797 . AB=0.216216;ABP=28.8919;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=78;DPB=78;DPRA=1.80488;EPP=20.3821;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=323;QR=2788;RO=70;RPL=0;RPP=20.3821;RPPR=155.013;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:29,8:29:1146:8:323:-18.3005,0,-92.2878 0/0:20:20,0:20:792:0:0:0,-6.0206,-71.6006 0/0:21:21,0:21:850:0:0:0,-6.32163,-76.8118 dDocent_Contig_3442 28 . A T 180.12 . AB=0.235294;ABP=23.7032;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=113;DPB=113;DPRA=0.986842;EPP=22.5536;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=358;QR=4146;RO=104;RPL=0;RPP=22.5536;RPPR=228.843;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:26,8:26:1033:8:320:-18.9329,0,-83.031 0/0:38:38,0:38:1503:0:0:0,-11.4391,-135.523 0/0:41:40,1:40:1610:1:38:0,-8.54496,-141.334 dDocent_Contig_3443 83 . T C 75.7356 . AB=0.162791;ABP=45.4803;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=59;DPB=59;DPRA=1.34375;EPP=18.2106;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=1673;RO=52;RPL=7;RPP=18.2106;RPPR=115.927;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:15,2:15:488:2:70:-1.52989,0,-39.1166 0/1:26:21,5:21:665:5:175:-8.26691,0,-52.3262 0/0:16:16,0:16:520:0:0:0,-4.81648,-47.113 dDocent_Contig_3444 98 . N G 381.094 . AB=0.666667;ABP=4.45795;AC=6;AF=1;AN=6;AO=14;CIGAR=2X;DP=16;DPB=89.5;DPRA=0;EPP=33.4109;EPPR=0;GTI=0;LEN=1;MEANALT=1.33333;MQM=55.2857;MQMR=0;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0;PAO=73.5;PQA=2107;PQR=0;PRO=0;QA=473;QR=0;RO=0;RPL=14;RPP=33.4109;RPPR=0;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:8:0,0,8:0:0:0,8:0,271:-20.2365,-20.2365,-20.2365,-2.40824,-2.40824,0 1|1:2:0,0,2:0:0:0,2:0,67:-5.19425,-5.19425,-5.19425,-0.60206,-0.60206,0 1|1:6:0,2,4:0:0:2,4:68,135:-13.5802,-8.57839,-7.97633,-3.84077,0,-2.63665 dDocent_Contig_3446 53 . A T 2418.4 . AB=0.583942;ABP=11.395;AC=3;AF=0.5;AN=6;AO=80;CIGAR=1X;DP=137;DPB=137;DPRA=0;EPP=176.728;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3177;QR=2282;RO=57;RPL=80;RPP=176.728;RPPR=126.784;RPR=0;RUN=1;SAF=80;SAP=176.728;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:12,13:12:485:13:515:-39.1696,0,-36.4757 0/1:38:11,27:11:428:27:1059:-84.1575,0,-27.4305 0/1:74:34,40:34:1369:40:1603:-122.23,0,-101.191 dDocent_Contig_3448 209 . N G 110.047 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.29832;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:118:-11.0025,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_3449 24 . T C 268.41 . AB=0.224138;ABP=41.348;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=167;DPB=167;DPRA=1.06422;EPP=31.2394;EPPR=337.417;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=502;QR=6165;RO=154;RPL=0;RPP=31.2394;RPPR=337.417;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=154;SRP=337.417;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:51:51,0:51:2051:0:0:0,-15.3525,-184.776 0/1:58:45,13:45:1783:13:502:-28.0628,0,-143.234 0/0:58:58,0:58:2331:0:0:0,-17.4597,-209.937 dDocent_Contig_3450 27 . A T 129.393 . AB=0.189189;ABP=34.0565;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=119;DPB=119;DPRA=1.55172;EPP=20.3821;EPPR=244.044;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=316;QR=4398;RO=111;RPL=0;RPP=20.3821;RPPR=244.044;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=111;SRP=244.044;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:29,0:29:1153:0:0:0,-8.72987,-104.057 0/0:53:52,1:52:2055:1:39:0,-12.058,-181.249 0/1:37:30,7:30:1190:7:277:-14.1611,0,-96.2372 dDocent_Contig_3451 29 . G C 4983.34 . AB=0.548701;ABP=9.35551;AC=3;AF=0.5;AN=6;AO=169;CIGAR=1M2D2M1X2M1X;DP=308;DPB=270.444;DPRA=0;EPP=369.989;EPPR=302.673;GTI=0;LEN=1;MEANALT=1.33333;MQM=55.4615;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6618;QR=5352;RO=138;RPL=0;RPP=369.989;RPPR=302.673;RPR=169;RUN=1;SAF=169;SAP=369.989;SAR=0;SRF=138;SRP=302.673;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:114:66,48:66:2591:48:1856:-132.458,0,-199.042 0|1:84:31,53:31:1174:53:2086:-162.3,0,-80.6638 0|1:110:41,68:41:1587:68:2676:-207.292,0,-109.862 dDocent_Contig_3452 8 . G A 4712.82 . AB=0.757426;ABP=119.281;AC=3;AF=0.5;AN=6;AO=153;CIGAR=1X3M1X;DP=202;DPB=202;DPRA=0;EPP=335.246;EPPR=102.898;GTI=0;LEN=1;MEANALT=2;MQM=59.7124;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.980392;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5943;QR=1785;RO=46;RPL=0;RPP=335.246;RPPR=102.898;RPR=153;RUN=1;SAF=153;SAP=335.246;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:72:9,61:9:350:61:2375:-192.658,0,-10.5465 0|1:65:24,40:24:924:40:1537:-118.923,0,-63.886 0|1:65:13,52:13:511:52:2031:-163.417,0,-26.7699 dDocent_Contig_3453 7 . A G 273.896 . AB=0.26;ABP=28.0257;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=138;DPB=138;DPRA=1.13636;EPP=31.2394;EPPR=274.444;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=478;QR=4703;RO=125;RPL=0;RPP=31.2394;RPPR=274.444;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=125;SRP=274.444;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:37,13:37:1385:13:478:-28.3104,0,-109.887 0/0:49:49,0:49:1834:0:0:0,-14.7505,-165.317 0/0:39:39,0:39:1484:0:0:0,-11.7402,-133.831 dDocent_Contig_3454 17 . T A 435.219 . AB=0.126183;ABP=387.772;AC=3;AF=0.5;AN=6;AO=40;CIGAR=1X;DP=317;DPB=317;DPRA=0;EPP=89.8692;EPPR=587.262;GTI=0;LEN=1;MEANALT=1;MQM=59.775;MQMR=56.9783;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.0722022;PAO=0;PQA=0;PQR=0;PRO=0;QA=1574;QR=10989;RO=277;RPL=0;RPP=89.8692;RPPR=604.508;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=275;SRP=587.262;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:97:81,16:81:3190:16:640:-28.7152,0,-257.473 0/1:85:74,11:74:2947:11:427:-13.1924,0,-237.42 0/1:135:122,13:122:4852:13:507:-5.33094,0,-384.178 dDocent_Contig_3456 9 . C T 269.747 . AB=0.232143;ABP=37.909;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=76;DPB=76;DPRA=1.4;EPP=31.2394;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.920635;PAO=0;PQA=0;PQR=0;PRO=0;QA=504;QR=2429;RO=63;RPL=0;RPP=31.2394;RPPR=139.813;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:767:0:0:0,-6.0206,-69.3577 0/1:26:16,10:16:613:10:388:-27.4512,0,-47.6825 0/1:30:27,3:27:1049:3:116:-1.7868,0,-85.6857 dDocent_Contig_3457 24 . C A 443.75 . AB=0.211538;ABP=78.1767;AC=2;AF=0.333333;AN=6;AO=22;CIGAR=1X;DP=124;DPB=124;DPRA=2.6;EPP=50.7827;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=859;QR=4080;RO=102;RPL=0;RPP=50.7827;RPPR=224.5;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:35,6:35:1401:6:234:-9.08595,0,-114.005 0/0:20:20,0:20:804:0:0:0,-6.0206,-72.6788 0/1:63:47,16:47:1875:16:625:-37.6078,0,-149.986 dDocent_Contig_3458 209 . N G 175.583 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=191;QR=0;RO=0;RPL=5;RPP=13.8677;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:5:0,5:0:0:5:191:-17.5577,-1.50515,0 ./.:.:.:.:.:.:.:. dDocent_Contig_3461 13 . A T 425.105 . AB=0.309091;ABP=20.4216;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=42.0968;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=714;QR=2029;RO=51;RPL=0;RPP=42.0968;RPPR=113.755;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:22,5:22:870:5:197:-9.97622,0,-70.4831 0/0:14:13,1:13:523:1:40:0,-0.218741,-43.4215 0/1:28:16,12:16:636:12:477:-34.8496,0,-49.1464 dDocent_Contig_3462 39 . A C 27890.7 . AB=0.670213;ABP=215.907;AC=4;AF=0.666667;AN=6;AO=1369;CIGAR=1X;DP=1737;DPB=1737;DPRA=0;EPP=2975.76;EPPR=797.769;GTI=0;LEN=1;MEANALT=1.66667;MQM=28.4887;MQMR=37.9508;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=54647;QR=14477;RO=366;RPL=0;RPP=2975.76;RPPR=797.769;RPR=1369;RUN=1;SAF=1369;SAP=2975.76;SAR=0;SRF=366;SRP=797.769;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:365:104,260:104:4067:260:10371:-523.395,0,-224.896 0/1:481:174,307:174:6896:307:12191:-618.961,0,-412.055 1/1:891:88,802:88:3514:802:32085:-1649.03,-3.24416,0 dDocent_Contig_3463 17 . G T 94.261 . AB=0.133333;ABP=73.0765;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=286;DPB=286;DPRA=1.16279;EPP=22.5536;EPPR=602.337;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.985507;PAO=0;PQA=0;PQR=0;PRO=0;QA=356;QR=10788;RO=276;RPL=0;RPP=22.5536;RPPR=602.337;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=276;SRP=602.337;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:86:85,0:85:3304:0:0:0,-25.5875,-297.126 0/1:60:52,8:52:2001:8:315:-10.6479,0,-162.248 0/0:140:139,1:139:5483:1:41:0,-38.0496,-489.238 dDocent_Contig_3464 32 . G T 101.598 . AB=0.162791;ABP=45.4803;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X2M1X;DP=71;DPB=71;DPRA=0.767857;EPP=18.2106;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=274;QR=2490;RO=64;RPL=0;RPP=18.2106;RPPR=141.985;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:28:23,5:23:896:5:196:-9.586,0,-72.5221 0|1:15:13,2:13:497:2:78:-2.88785,0,-40.5572 0|0:28:28,0:28:1097:0:0:0,-8.42884,-99.0213 dDocent_Contig_3465 1 . N G 218.564 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:149:-13.773,-1.20412,0 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 dDocent_Contig_3468 171 . C A 84.9961 . 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AB=0.0802603;ABP=708.475;AC=3;AF=0.5;AN=6;AO=37;CIGAR=1X8M;DP=461;DPB=460.667;DPRA=0;EPP=83.3548;EPPR=100.727;GTI=0;LEN=1;MEANALT=12.6667;MQM=60;MQMR=60;NS=3;NUMALT=7;ODDS=1.11022e-16;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1423;QR=1738;RO=45;RPL=0;RPP=83.3548;RPPR=100.727;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:161:12,8,35,9,4,17,20,43:12:462:8,35,9,4,17,20,43:300,1210,353,156,654,769,1622:-188.891,-167.93,-203.455,-94.91,-108.27,-122.307,-163.471,-176.831,-103.811,-198.695,-179.689,-193.049,-120.028,-188.59,-216.418,-138.81,-152.17,-79.1504,-147.711,-163.929,-171.626,-129.367,-142.727,-69.7078,-138.268,-154.486,-113.607,-161.28,-59.6566,-73.0169,0,-68.5578,-84.7755,-43.8964,-34.4535,-84.6462 1|0:131:9,3,30,2,10,17,11,33:9:346:3,30,2,10,17,11,33:116,1074,78,389,661,420,1250:-158.45,-151.63,-179.132,-74.0738,-92.9502,-93.4476,-154.747,-173.624,-96.0667,-182.55,-129.21,-148.087,-70.5305,-151.204,-154.605,-106.838,-125.715,-48.1589,-128.832,-103.295,-130.126,-126.699,-145.576,-68.0197,-148.693,-123.156,-100.784,-151.793,-58.6772,-77.5541,0,-80.6706,-55.1339,-32.7616,-52.623,-77.1486 0|1:169:24,18,64,4,9,18,6,14:24:930:18,64,4,9,18,6,14:696,2333,157,352,599,234,537:-180.897,-130.95,-201.935,0,-19.2322,-57.1382,-175.209,-194.441,-63.4909,-250.408,-159.496,-178.728,-47.7787,-222.987,-233.191,-141.566,-160.798,-29.853,-205.056,-189.344,-212.55,-168.886,-188.118,-57.168,-232.376,-216.664,-198.733,-243.483,-144.043,-163.275,-32.3261,-207.534,-191.822,-173.891,-201.211,-216.233 dDocent_Contig_3472 27 . A C 3338.25 . AB=0.731034;ABP=70.2361;AC=3;AF=0.5;AN=6;AO=106;CIGAR=1X;DP=145;DPB=145;DPRA=0;EPP=233.186;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4227;QR=1565;RO=39;RPL=0;RPP=233.186;RPPR=87.6977;RPR=106;RUN=1;SAF=106;SAP=233.186;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:15,40:15:600:40:1607:-128.306,0,-37.7805 0/1:33:6,27:6:238:27:1069:-86.5702,0,-11.8593 0/1:57:18,39:18:727:39:1551:-122.665,0,-48.5961 dDocent_Contig_3474 14 . C T 116.605 . AB=0.145455;ABP=63.0614;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=179;DPB=179;DPRA=0.887097;EPP=20.3821;EPPR=374.332;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=323;QR=6824;RO=171;RPL=0;RPP=20.3821;RPPR=374.332;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=171;SRP=374.332;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:68:68,0:68:2701:0:0:0,-20.47,-243.215 0/1:55:47,8:47:1870:8:323:-12.8823,0,-151.95 0/0:56:56,0:56:2253:0:0:0,-16.8577,-202.932 dDocent_Contig_3476 84 . C A 136.2 . 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AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=6.91895;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=34.2;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=194;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=4;SAP=6.91895;SAR=1;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:153:-10.4349,-1.20412,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:41:-1.8973,-0.30103,0 dDocent_Contig_3484 23 . T A 1102.14 . 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T A 36.3117 . AB=0.153846;ABP=30.0702;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=16.0391;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=226;QR=2070;RO=52;RPL=0;RPP=16.0391;RPPR=115.927;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:30,2:30:1200:2:81:0,-1.94723,-100.593 0/1:13:11,2:11:433:2:76:-3.30087,0,-35.4123 0/1:13:11,2:11:437:2:69:-2.63889,0,-35.7714 dDocent_Contig_3487 16 . A G 507.754 . AB=0.30137;ABP=28.0269;AC=2;AF=0.333333;AN=6;AO=22;CIGAR=1M1D1M1X;DP=102;DPB=96.5;DPRA=1.25862;EPP=50.7827;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=42.6364;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=874;QR=3162;RO=80;RPL=0;RPP=50.7827;RPPR=176.728;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:29:29,0:29:1156:0:0:0,-8.72987,-104.326 0|1:27:24,3:24:952:3:119:-2.46692,0,-77.8564 0|1:46:27,19:27:1054:19:755:-50.615,0,-81.3079 dDocent_Contig_3488 38 . T C 871.595 . AB=0.274648;ABP=65.6466;AC=3;AF=0.5;AN=6;AO=39;CIGAR=1X;DP=142;DPB=142;DPRA=0;EPP=87.6977;EPPR=224.5;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1474;QR=3812;RO=102;RPL=0;RPP=87.6977;RPPR=224.5;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:40,8:40:1486:8:307:-13.1699,0,-119.2 0/1:39:29,10:29:1099:10:383:-23.0856,0,-87.4738 0/1:54:33,21:33:1227:21:784:-54.6207,0,-94.4662 dDocent_Contig_3489 50 . T G 223.454 . AB=0.421053;ABP=4.03889;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=84;DPB=84;DPRA=0.584615;EPP=20.3821;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=318;QR=2998;RO=75;RPL=8;RPP=20.3821;RPPR=165.871;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:11,8:11:442:8:318:-23.2662,0,-34.4154 0/0:24:24,0:24:953:0:0:0,-7.22472,-86.0717 0/0:41:40,0:40:1603:0:0:0,-12.0412,-144.319 dDocent_Contig_3490 16 . C T 136.292 . AB=0.183333;ABP=55.2704;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X3M1X;DP=60;DPB=60;DPRA=0;EPP=26.8965;EPPR=107.241;GTI=0;LEN=1;MEANALT=1.33333;MQM=35;MQMR=59.375;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.8125;PAO=0;PQA=0;PQR=0;PRO=0;QA=440;QR=1912;RO=48;RPL=0;RPP=26.8965;RPPR=107.241;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:21:17,3:17:679:3:120:-3.06395,0,-55.0415 0|1:19:13,6:13:514:6:240:-12.8666,0,-40.8878 0|1:20:18,2:18:719:2:80:-0.402734,0,-58.5212 dDocent_Contig_3491 98 . N G 375.017 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=29.068;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=399;QR=0;RO=0;RPL=12;RPP=29.068;RPPR=0;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:123:-11.3741,-1.20412,0 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 1/1:6:0,6:0:0:6:206:-18.8767,-1.80618,0 dDocent_Contig_3492 9 . C A 79.3689 . AB=0.133333;ABP=38.0434;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X7M;DP=78;DPB=80.25;DPRA=1.2;EPP=11.6962;EPPR=131.127;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=148;QR=2263;RO=59;RPL=0;RPP=11.6962;RPPR=131.127;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:25:21,2,0,0,0,1:21:792:2,0,0,0,1:74,0,0,0,40:0,-1.87098,-66.2007,-6.32163,-66.8027,-71.2762,-6.32163,-66.8027,-71.2762,-71.2762,-6.32163,-66.8027,-71.2762,-71.2762,-71.2762,-2.99754,-63.5065,-67.9798,-67.9798,-67.9798,-67.6787 0|0:23:15,0,2,4,0,2:15:576:0,2,4,0,2:0,62,122,0,78:-5.09026,-9.60571,-56.9302,-5.18193,-52.5015,-51.8995,0,-47.3201,-42.8947,-46.116,-9.60571,-56.9302,-52.5015,-47.3201,-56.9302,-3.17066,-50.5164,-46.0882,-40.9071,-50.5164,-49.9143 0|1:30:23,0,0,0,4,3:23:895:0,0,0,4,3:0,0,0,148,121:-5.164,-12.0877,-85.6445,-12.0877,-85.6445,-85.6445,-12.0877,-85.6445,-85.6445,-85.6445,0,-73.5406,-73.5406,-73.5406,-72.3365,-2.09926,-75.6686,-75.6686,-75.6686,-63.5648,-74.7655 dDocent_Contig_3493 26 . T G 155.231 . AB=0.169811;ABP=53.2;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=197;DPB=197;DPRA=0.736111;EPP=22.5536;EPPR=411.247;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=356;QR=7506;RO=188;RPL=0;RPP=22.5536;RPPR=411.247;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=188;SRP=411.247;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:44,9:44:1761:9:356:-16.4439,0,-142.75 0/0:62:62,0:62:2456:0:0:0,-18.6639,-221.186 0/0:82:82,0:82:3289:0:0:0,-24.6845,-296.067 dDocent_Contig_3494 8 . G A 3059.96 . AB=0.782946;ABP=92.714;AC=3;AF=0.5;AN=6;AO=101;CIGAR=1X;DP=129;DPB=129;DPRA=0;EPP=222.329;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3858;QR=1053;RO=28;RPL=0;RPP=222.329;RPPR=63.8115;RPR=101;RUN=1;SAF=101;SAP=222.329;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:14,41:14:526:41:1562:-124.296,0,-31.1245 0/1:42:11,31:11:413:31:1177:-93.5843,0,-24.8756 0/1:32:3,29:3:114:29:1119:-91.3796,0,-0.999258 dDocent_Contig_3495 197 . C A 31.817 . AB=0.142857;ABP=26.2761;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=60;DPB=60;DPRA=1.07692;EPP=9.52472;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=2157;RO=57;RPL=3;RPP=9.52472;RPPR=126.784;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=126.784;SRR=57;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:721:0:0:0,-5.71957,-65.2207 0/1:21:18,3:18:662:3:115:-4.40326,0,-53.5849 0/0:20:20,0:20:774:0:0:0,-6.0206,-69.9884 dDocent_Contig_3497 138 . C T 45.6909 . AB=0.104762;ABP=145.48;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=167;DPB=167;DPRA=0.846774;EPP=26.8965;EPPR=341.76;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=409;QR=5920;RO=156;RPL=0;RPP=26.8965;RPPR=341.76;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=341.76;SRR=156;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:51,7:51:1922:7:251:-5.47381,0,-155.737 0/1:47:43,4:43:1633:4:158:-0.451864,0,-133.059 0/0:62:62,0:62:2365:0:0:0,-18.6639,-213.012 dDocent_Contig_3499 29 . T G 2022.92 . AB=0.467949;ABP=4.40227;AC=3;AF=0.5;AN=6;AO=73;CIGAR=1X;DP=156;DPB=156;DPRA=0;EPP=161.528;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2801;QR=3255;RO=83;RPL=0;RPP=161.528;RPPR=183.243;RPR=73;RUN=1;SAF=73;SAP=161.528;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:26,19:26:1022:19:705:-50.2119,0,-78.7254 0/1:32:16,16:16:628:16:602:-44.8739,0,-47.2191 0/1:79:41,38:41:1605:38:1494:-110.923,0,-120.9 dDocent_Contig_3500 60 . A T 240.733 . AB=0.17284;ABP=78.3148;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=120;DPB=120;DPRA=1.03846;EPP=33.4109;EPPR=233.186;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=556;QR=4160;RO=106;RPL=14;RPP=33.4109;RPPR=233.186;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:39,0:39:1535:0:0:0,-11.7402,-138.399 0/1:52:44,8:44:1734:8:314:-12.965,0,-140.636 0/1:29:23,6:23:891:6:242:-13.4271,0,-71.7632 dDocent_Contig_3501 10 . A G 2110.19 . AB=0.133333;ABP=178.176;AC=0;AF=0;AN=6;AO=20;CIGAR=2X1M;DP=150;DPB=150;DPRA=0;EPP=46.4397;EPPR=92.0407;GTI=0;LEN=1;MEANALT=4;MQM=59.9;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.97561;PAO=0;PQA=0;PQR=0;PRO=0;QA=763;QR=1597;RO=41;RPL=0;RPP=46.4397;RPPR=92.0407;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:46:14,5,10,16:14:550:5,10,16:200,390,621:-46.7664,-34.5032,-78.2386,-18.9218,-47.685,-61.1518,0,-28.763,-13.1823,-40.4238 0|0:58:7,14,5,31:7:265:14,5,31:541,194,1155:-115.134,-72.804,-90.3148,-101.3,-78.5878,-121.52,-22.7128,0,-28.4947,-35.1033 0|0:46:20,1,5,19:20:782:1,5,19:40,179,718:-52.8352,-55.5597,-119.559,-44.2667,-105.27,-107.06,0,-61.0142,-49.7227,-58.5903 dDocent_Contig_3502 8 . G A 967.012 . AB=0.200772;ABP=204.437;AC=3;AF=0.5;AN=6;AO=52;CIGAR=1X;DP=259;DPB=259;DPRA=0;EPP=115.927;EPPR=445.991;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1965;QR=7653;RO=204;RPL=0;RPP=115.927;RPPR=445.991;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=204;SRP=445.991;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:63,8:63:2379:8:303:-6.25538,0,-192.955 0/1:77:48,29:48:1795:29:1088:-75.0436,0,-138.626 0/1:111:93,15:93:3479:15:574:-19.1189,0,-280.374 dDocent_Contig_3503 19 . C T 195.097 . AB=0.192982;ABP=49.6779;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=64;DPB=64;DPRA=4.07143;EPP=4.78696;EPPR=109.576;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.272727;PAIREDR=0.981132;PAO=0;PQA=0;PQR=0;PRO=0;QA=425;QR=2111;RO=53;RPL=0;RPP=26.8965;RPPR=118.098;RPR=11;RUN=1;SAF=7;SAP=4.78696;SAR=4;SRF=52;SRP=109.576;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:22,6:22:860:6:222:-11.9052,0,-69.284 0/1:29:24,5:24:965:5:203:-9.92319,0,-78.4188 0/0:7:7,0:7:286:0:0:0,-2.10721,-26.1148 dDocent_Contig_3504 17 . G A 46.6408 . AB=0.115385;ABP=69.8248;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X1M1X;DP=148;DPB=148;DPRA=1.5;EPP=22.5536;EPPR=302.673;GTI=0;LEN=1;MEANALT=1.5;MQM=53;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=351;QR=5410;RO=138;RPL=0;RPP=22.5536;RPPR=302.673;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=138;SRP=302.673;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:52:45,6:45:1768:6:234:-5.58489,0,-143.588 0|0:37:37,0:37:1443:0:0:0,-11.1381,-130.129 0|0:59:56,3:56:2199:3:117:0,-6.88903,-187.225 dDocent_Contig_3505 53 . T G 26077.5 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=776;CIGAR=1X;DP=811;DPB=811;DPRA=0;EPP=1688.07;EPPR=70.3259;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.96134;PAIREDR=0.967742;PAO=0;PQA=0;PQR=0;PRO=0;QA=30241;QR=1240;RO=31;RPL=776;RPP=1688.07;RPPR=70.3259;RPR=0;RUN=1;SAF=776;SAP=1688.07;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:223:4,217:4:160:217:8487:-748.609,-52.1471,0 1/1:373:17,355:17:676:355:13844:-1183.88,-51.213,0 1/1:215:10,204:10:404:204:7910:-674.785,-28.0999,0 dDocent_Contig_3506 40 . A G 192.951 . AB=0.36;ABP=7.26639;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=48;DPB=48;DPRA=0.543478;EPP=22.5536;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=316;QR=1562;RO=39;RPL=0;RPP=22.5536;RPPR=87.6977;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:10,2:10:391:2:76:-3.6019,0,-31.9332 0/0:23:23,0:23:930:0:0:0,-6.92369,-84.0027 0/1:13:6,7:6:241:7:240:-18.0111,0,-18.1529 dDocent_Contig_3507 18 . T A 63.7043 . AB=0.12766;ABP=59.6072;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=68;DPB=68;DPRA=1.11905;EPP=16.0391;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=2421;RO=62;RPL=0;RPP=16.0391;RPPR=137.642;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:21,4:21:822:4:160:-7.25768,0,-66.7637 0/1:22:20,2:20:777:2:78:-0.780117,0,-63.6231 0/0:21:21,0:21:822:0:0:0,-6.32163,-74.2863 dDocent_Contig_3508 63 . G A 136.94 . AB=0.163934;ABP=62.8504;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=79;DPB=79;DPRA=0;EPP=7.94546;EPPR=117.971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=0.911765;PAO=0;PQA=0;PQR=0;PRO=0;QA=399;QR=2489;RO=68;RPL=11;RPP=26.8965;RPPR=150.67;RPR=0;RUN=1;SAF=8;SAP=7.94546;SAR=3;SRF=64;SRP=117.971;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:27,6:27:999:6:226:-10.7623,0,-80.278 0/1:28:24,4:24:841:4:148:-5.25044,0,-67.5658 0/0:18:17,1:17:649:1:25:0,-2.91868,-56.2437 dDocent_Contig_3509 99 . N C 1577.52 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=53;CIGAR=1X;DP=53;DPB=53;DPRA=0;EPP=109.576;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=6.77626e-21;PAIRED=0.981132;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1737;QR=0;RO=0;RPL=53;RPP=118.098;RPPR=0;RPR=0;RUN=1;SAF=52;SAP=109.576;SAR=1;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:165:-15.1759,-1.50515,0 1/1:17:0,17:0:0:17:583:-52.7947,-5.11751,0 1/1:31:0,31:0:0:31:989:-89.3044,-9.33193,0 dDocent_Contig_3513 24 . G T 256.375 . AB=0.244444;ABP=28.5372;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=124;DPB=124;DPRA=1.13924;EPP=26.8965;EPPR=248.387;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=445;QR=4474;RO=113;RPL=0;RPP=26.8965;RPPR=248.387;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=113;SRP=248.387;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:41,0:41:1623:0:0:0,-12.3422,-146.306 0/0:38:38,0:38:1496:0:0:0,-11.4391,-134.889 0/1:45:34,11:34:1355:11:445:-26.8594,0,-108.661 dDocent_Contig_3514 31 . A C 2119.12 . 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AB=0.235294;ABP=34.0496;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=74;DPB=74;DPRA=0;EPP=31.2394;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=499;QR=2339;RO=61;RPL=0;RPP=31.2394;RPPR=135.47;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:31,4:31:1165:4:144:-2.77405,0,-94.5839 0/1:16:8,8:8:325:8:317:-24.0781,0,-24.8032 0/0:23:22,1:22:849:1:38:0,-3.12642,-72.9249 dDocent_Contig_3516 147 . G A 36.2038 . AB=0.136364;ABP=28.2783;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=60;DPB=60;DPRA=1.15789;EPP=9.52472;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=2202;RO=57;RPL=0;RPP=9.52472;RPPR=126.784;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=126.784;SRR=57;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:674:0:0:0,-5.11751,-60.9904 0/0:21:21,0:21:780:0:0:0,-6.32163,-70.5045 0/1:22:19,3:19:748:3:123:-4.84213,0,-61.0192 dDocent_Contig_3517 34 . T C 5319.4 . AB=0.273526;ABP=358.077;AC=3;AF=0.5;AN=6;AO=218;CIGAR=1X;DP=797;DPB=797;DPRA=0;EPP=476.391;EPPR=1260.29;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.972477;PAIREDR=0.93437;PAO=0;PQA=0;PQR=0;PRO=0;QA=8614;QR=22825;RO=579;RPL=0;RPP=476.391;RPPR=1260.29;RPR=218;RUN=1;SAF=218;SAP=476.391;SAR=0;SRF=579;SRP=1260.29;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:187:129,58:129:5058:58:2284:-149.443,0,-398.833 0/1:387:289,98:289:11376:98:3873:-232.075,0,-906.629 0/1:223:161,62:161:6391:62:2457:-154.139,0,-507.811 dDocent_Contig_3518 15 . T A 105.252 . AB=0.363636;ABP=4.78696;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=78;DPB=78;DPRA=0.328358;EPP=11.6962;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=2922;RO=74;RPL=0;RPP=11.6962;RPPR=163.699;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:35:35,0:35:1372:0:0:0,-10.536,-123.738 0/1:11:7,4:7:268:4:163:-11.7471,0,-21.1637 0/0:32:32,0:32:1282:0:0:0,-9.63296,-115.646 dDocent_Contig_3519 36 . C A 233.936 . AB=0.27027;ABP=19.9713;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=49;DPB=49;DPRA=1.54167;EPP=24.725;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=51.6667;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.794872;PAO=0;PQA=0;PQR=0;PRO=0;QA=393;QR=1571;RO=39;RPL=0;RPP=24.725;RPPR=87.6977;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:490:0:0:0,-3.61236,-37.106 0/1:12:11,1:11:439:1:40:-0.383319,0,-33.8585 0/1:25:16,9:16:642:9:353:-24.6017,0,-44.9527 dDocent_Contig_3522 15 . A C 120.534 . AB=0.157895;ABP=60.9543;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=230;DPB=230;DPRA=0.65896;EPP=22.5536;EPPR=482.906;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=331;QR=8763;RO=221;RPL=0;RPP=22.5536;RPPR=482.906;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=221;SRP=482.906;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:48,9:48:1898:9:331:-12.9742,0,-153.873 0/0:78:78,0:78:3097:0:0:0,-23.4803,-278.824 0/0:95:95,0:95:3768:0:0:0,-28.5978,-339.129 dDocent_Contig_3523 169 . T A 563.72 . 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AB=0.195652;ABP=40.0197;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=125;DPB=125;DPRA=1.16456;EPP=22.5536;EPPR=254.901;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=350;QR=4397;RO=116;RPL=9;RPP=22.5536;RPPR=254.901;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:37,9:37:1450:9:350:-18.0122,0,-116.911 0/0:44:44,0:44:1625:0:0:0,-13.2453,-146.489 0/0:35:35,0:35:1322:0:0:0,-10.536,-119.238 dDocent_Contig_3527 10 . C T 995.746 . 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T A 1406.79 . AB=0.205357;ABP=256.375;AC=3;AF=0.5;AN=6;AO=69;CIGAR=1X;DP=336;DPB=336;DPRA=0;EPP=152.842;EPPR=557.029;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=54.794;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.853933;PAO=0;PQA=0;PQR=0;PRO=0;QA=2718;QR=10636;RO=267;RPL=0;RPP=152.842;RPPR=582.793;RPR=69;RUN=1;SAF=69;SAP=152.842;SAR=0;SRF=264;SRP=557.029;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:110:81,29:81:3224:29:1149:-70.5733,0,-226.126 0/1:100:89,11:89:3538:11:441:-9.94241,0,-273.149 0/1:126:97,29:97:3874:29:1128:-63.8798,0,-300.002 dDocent_Contig_3529 28 . C G 400.518 . AB=0.344828;ABP=21.2057;AC=1;AF=0.166667;AN=6;AO=30;CIGAR=1X1M1X1M1X1M1X3M;DP=116;DPB=114.8;DPRA=0;EPP=68.1545;EPPR=133.299;GTI=0;LEN=1;MEANALT=4;MQM=23.9;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=717;QR=2194;RO=60;RPL=0;RPP=68.1545;RPPR=133.299;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:58:17,29,6,4,0,0:17:606:29,6,4,0,0:694,215,38,0,0:-40.8366,0,-40.7991,-37.3788,-40.973,-85.0238,-44.7437,-48.337,-85.6213,-92.9843,-45.9541,-49.529,-86.83,-94.1884,-95.399,-45.9541,-49.529,-86.83,-94.1884,-95.399,-95.399 0|0:29:21,0,6,0,0,2:21:767:0,6,0,0,2:0,215,0,0,78:-1.37244,-7.69407,-70.4595,0,-62.6463,-60.8402,-7.69407,-70.4595,-62.6463,-70.4595,-7.69407,-70.4595,-62.6463,-70.4595,-70.4595,-1.23028,-64.0439,-56.2331,-64.0439,-64.0439,-63.4418 0|0:29:22,1,0,0,4,2:22:821:1,0,0,4,2:23,0,0,100,82:-0.200782,-5.33629,-72.3208,-6.82344,-72.6218,-74.1155,-6.82344,-72.6218,-74.1155,-74.1155,-0.177181,-65.9294,-67.4214,-67.4214,-66.2173,0,-65.8494,-67.3428,-67.3428,-60.6497,-66.7408 dDocent_Contig_3531 12 . 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AB=0.357143;ABP=5.49198;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=38;DPB=38;DPRA=1.16667;EPP=13.8677;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=1108;RO=33;RPL=0;RPP=13.8677;RPPR=74.6689;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=74.6689;SRR=33;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:9,5:9:315:5:159:-10.4104,0,-24.4743 0/0:12:12,0:12:388:0:0:0,-3.61236,-35.2333 0/0:12:12,0:12:405:0:0:0,-3.61236,-36.7746 dDocent_Contig_3536 39 . G T 955.598 . AB=0.241758;ABP=55.7222;AC=1;AF=0.166667;AN=6;AO=22;CIGAR=1M1D1M1X;DP=124;DPB=111.25;DPRA=0;EPP=50.7827;EPPR=161.528;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.972603;PAO=0;PQA=0;PQR=0;PRO=0;QA=872;QR=2872;RO=73;RPL=0;RPP=50.7827;RPPR=161.528;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:33:23,0,10:23:910:0,10:0,401:-26.5161,-33.4398,-108.328,0,-75.2868,-72.2765 0|0:45:30,5,10:30:1180:5,10:186,381:-22.2224,-16.0387,-111.605,0,-81.8664,-94.0706 0|1:46:20,17,9:20:782:17,9:686,350:-50.538,0,-59.1742,-27.8025,-35.5312,-89.3767 dDocent_Contig_3537 26 . A G 1169.53 . AB=0.296774;ABP=58.614;AC=3;AF=0.5;AN=6;AO=46;CIGAR=1X;DP=155;DPB=155;DPRA=0;EPP=102.898;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1848;QR=4279;RO=109;RPL=0;RPP=102.898;RPPR=239.701;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:29,11:29:1088:11:445:-28.3645,0,-86.1512 0/1:49:38,11:38:1503:11:436:-24.8444,0,-120.76 0/1:66:42,24:42:1688:24:967:-67.4606,0,-132.271 dDocent_Contig_3538 93 . G C 226.282 . AB=0.245283;ABP=32.8783;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=96;DPB=96;DPRA=0.616279;EPP=31.2394;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=447;QR=2773;RO=83;RPL=13;RPP=31.2394;RPPR=183.243;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:24,5:24:792:5:170:-6.90469,0,-62.855 0/1:24:16,8:16:556:8:277:-18.0423,0,-43.1438 0/0:43:43,0:43:1425:0:0:0,-12.9443,-128.54 dDocent_Contig_3539 20 . A G 2208.59 . AB=0.490323;ABP=3.13639;AC=3;AF=0.5;AN=6;AO=76;CIGAR=1X;DP=155;DPB=155;DPRA=0;EPP=168.042;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3004;QR=3093;RO=79;RPL=0;RPP=168.042;RPPR=174.557;RPR=76;RUN=1;SAF=76;SAP=168.042;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:8,23:8:311:23:896:-71.6015,0,-19.0188 0/1:72:32,40:32:1235:40:1594:-122.024,0,-89.7608 0/1:52:39,13:39:1547:13:514:-30.9501,0,-123.819 dDocent_Contig_3540 1 . N G 3468.24 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=114;CIGAR=1X4M;DP=118;DPB=118.8;DPRA=0;EPP=250.558;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=59.5175;MQMR=0;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0.5;PQA=17.5;PQR=17.5;PRO=0.5;QA=3845;QR=0;RO=0;RPL=0;RPP=250.558;RPPR=0;RPR=114;RUN=1;SAF=0;SAP=250.558;SAR=114;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:36:0,0,35:0:0:0,35:0,1196:-107.74,-107.74,-107.74,-10.5361,-10.5361,0 1|1:27:0,2,25:0:0:2,25:67,836:-75.2092,-69.7831,-69.181,-7.52575,-1.76477,0 1|1:55:0,0,54:0:0:0,54:0,1813:-163.273,-163.273,-163.273,-16.2556,-16.2556,0 dDocent_Contig_3541 11 . C T 41.5229 . AB=0.0978261;ABP=132.26;AC=1;AF=0.166667;AN=6;AO=23;CIGAR=1X2M1X;DP=317;DPB=317;DPRA=0;EPP=52.9542;EPPR=561.588;GTI=0;LEN=1;MEANALT=4.33333;MQM=60;MQMR=59.8242;NS=3;NUMALT=1;ODDS=2.77556e-17;PAIRED=0;PAIREDR=0.14652;PAO=0;PQA=0;PQR=0;PRO=0;QA=905;QR=10738;RO=273;RPL=0;RPP=52.9542;RPPR=595.822;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=269;SRP=561.588;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:92:79,9:79:3102:9:351:-5.06815,0,-251.615 0|0:96:87,4:87:3420:4:163:0,-12.7416,-292.834 0|0:129:107,10:107:4216:10:391:0,-0.0671063,-343.889 dDocent_Contig_3542 53 . C G 3072.15 . AB=0.714286;ABP=58.8482;AC=3;AF=0.5;AN=6;AO=100;CIGAR=1X;DP=140;DPB=140;DPRA=0;EPP=220.158;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3914;QR=1512;RO=40;RPL=100;RPP=220.158;RPPR=89.8692;RPR=0;RUN=1;SAF=100;SAP=220.158;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:7,21:7:260:21:802:-64.0686,0,-15.3181 0/1:45:16,29:16:618:29:1126:-88.0847,0,-42.3984 0/1:67:17,50:17:634:50:1986:-158.779,0,-37.2095 dDocent_Contig_3543 73 . T G 3596.22 . AB=0.766667;ABP=21.5402;AC=5;AF=0.833333;AN=6;AO=125;CIGAR=1X5M1X;DP=154;DPB=154;DPRA=0;EPP=274.444;EPPR=35.5824;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.976;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4427;QR=537;RO=15;RPL=125;RPP=274.444;RPPR=35.5824;RPR=0;RUN=1;SAF=125;SAP=274.444;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:54:3,4,43,4:3:107:4,43,4:147,1531,139:-128.099,-116.983,-124.501,-4.22229,-0.920183,0,-117.702,-114.405,-1.64943,-125.22 0|1:30:6,0,23,1:6:215:0,23,1:0,824,37:-65.3828,-67.189,-84.7234,0,-17.5245,-10.6008,-64.1615,-81.696,-14.4958,-81.3949 1|1:70:6,0,59,5:6:215:0,59,5:0,2072,175:-167.057,-168.863,-186.398,-0.221413,-17.7608,0,-154.625,-172.16,-3.52621,-170.655 dDocent_Contig_3544 24 . A C 322.19 . AB=0.317073;ABP=14.9269;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=55;DPB=55;DPRA=1.46429;EPP=31.2394;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=512;QR=1632;RO=42;RPL=0;RPP=31.2394;RPPR=94.2121;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:11,11:11:416:11:433:-32.7032,0,-31.1646 0/1:19:17,2:17:680:2:79:-1.77806,0,-55.8119 0/0:14:14,0:14:536:0:0:0,-4.21442,-48.5784 dDocent_Contig_3545 98 . N A 63.6737 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=67;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:67:-6.36304,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_3546 98 . N T 91.5147 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=2X9I1X;DP=5;DPB=20;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=20;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=180;QR=0;RO=0;RPL=5;RPP=13.8677;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:5:0,5:0:0:5:180:-9.15093,-1.50515,0 dDocent_Contig_3547 86 . C G 1174.33 . AB=0.539326;ABP=4.20583;AC=3;AF=0.5;AN=6;AO=48;CIGAR=1X;DP=89;DPB=89;DPRA=0;EPP=107.241;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1633;QR=1430;RO=41;RPL=48;RPP=107.241;RPPR=92.0407;RPR=0;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:6,11:6:208:11:374:-28.8712,0,-13.942 0/1:31:20,11:20:693:11:378:-25.019,0,-53.3572 0/1:41:15,26:15:529:26:881:-67.2592,0,-35.6 dDocent_Contig_3549 24 . G T 35.1991 . AB=0.108696;ABP=64.1892;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=148;DPB=148;DPRA=1.1087;EPP=16.0391;EPPR=311.359;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=5634;RO=142;RPL=0;RPP=16.0391;RPPR=311.359;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=142;SRP=311.359;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:41,5:41:1603:5:199:-4.4406,0,-130.664 0/0:56:55,1:55:2199:1:40:0,-12.862,-194.092 0/0:46:46,0:46:1832:0:0:0,-13.8474,-165.09 dDocent_Contig_3551 18 . A G 39.6176 . AB=0.222222;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=33;DPB=33;DPRA=0.75;EPP=7.35324;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=1231;RO=31;RPL=0;RPP=7.35324;RPPR=70.3259;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:276:2:80:-4.88252,0,-22.4997 0/0:14:14,0:14:559:0:0:0,-4.21442,-50.6526 0/0:10:10,0:10:396:0:0:0,-3.0103,-35.9954 dDocent_Contig_3552 35 . A G 150.601 . AB=0.304348;ABP=10.6577;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=67;DPB=67;DPRA=1.04545;EPP=18.2106;EPPR=124.758;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.983333;PAO=0;PQA=0;PQR=0;PRO=0;QA=254;QR=2364;RO=60;RPL=0;RPP=18.2106;RPPR=133.299;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=59;SRP=124.758;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:829:0:0:0,-6.32163,-74.9274 0/1:23:16,7:16:634:7:254:-16.282,0,-50.4717 0/0:23:23,0:23:901:0:0:0,-6.92369,-81.3971 dDocent_Contig_3553 98 . N T 424.191 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=17;CIGAR=1X;DP=17;DPB=17;DPRA=0;EPP=39.9253;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.705882;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=457;QR=0;RO=0;RPL=17;RPP=39.9253;RPPR=0;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:149:-13.7032,-1.50515,0 1/1:8:0,8:0:0:8:194:-17.6968,-2.40824,0 1/1:4:0,4:0:0:4:114:-10.5415,-1.20412,0 dDocent_Contig_3555 98 . N T 94.8205 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=2X;DP=4;DPB=19;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=28;PQA=710;PQR=0;PRO=0;QA=102;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:60:-5.40546,-0.60206,0 1|1:2:0,2:0:0:2:42:-3.77121,-0.60206,0 dDocent_Contig_3556 98 . N G 123.988 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=129;QR=0;RO=0;RPL=5;RPP=13.8677;RPPR=0;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:95:-8.86458,-0.90309,0 1/1:2:0,2:0:0:2:34:-3.22979,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_3559 13 . T C 2997.37 . AB=0.200229;ABP=685.2;AC=3;AF=0.5;AN=6;AO=175;CIGAR=1X;DP=874;DPB=874;DPRA=0;EPP=383.018;EPPR=1512.18;GTI=0;LEN=1;MEANALT=1.66667;MQM=56.5371;MQMR=59.9899;NS=3;NUMALT=1;ODDS=5.55112e-17;PAIRED=0.508571;PAIREDR=0.667626;PAO=0;PQA=0;PQR=0;PRO=0;QA=6496;QR=25955;RO=695;RPL=0;RPP=383.018;RPPR=1512.18;RPR=175;RUN=1;SAF=175;SAP=383.018;SAR=0;SRF=695;SRP=1512.18;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:294:215,75:215:8015:75:2720:-146.48,0,-633.678 0/1:385:318,67:318:11782:67:2524:-103.083,0,-944.104 0/1:195:162,33:162:6158:33:1252:-53.8913,0,-495.461 dDocent_Contig_3560 62 . C A 31.8156 . AB=0.206897;ABP=24.6501;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=2X;DP=64;DPB=64;DPRA=0;EPP=22.5536;EPPR=120.27;GTI=0;LEN=1;MEANALT=1.33333;MQM=26.7778;MQMR=58.1481;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=355;QR=2108;RO=54;RPL=0;RPP=22.5536;RPPR=120.27;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:35:31,3:31:1195:3:122:0,-1.80368,-98.5839 0|1:11:7,4:7:280:4:153:-4.38956,0,-22.2606 0|1:18:16,2:16:633:2:80:-0.373689,0,-51.3464 dDocent_Contig_3561 7 . G A 3156.89 . AB=0.262097;ABP=246.846;AC=3;AF=0.5;AN=6;AO=130;CIGAR=1X4M;DP=496;DPB=496;DPRA=0;EPP=285.302;EPPR=615.366;GTI=0;LEN=1;MEANALT=8.33333;MQM=58.9538;MQMR=58.539;NS=3;NUMALT=3;ODDS=0;PAIRED=0.876923;PAIREDR=0.921986;PAO=0;PQA=0;PQR=0;PRO=0;QA=4933;QR=9950;RO=282;RPL=0;RPP=285.302;RPPR=615.366;RPR=130;RUN=1;SAF=130;SAP=285.302;SAR=0;SRF=282;SRP=615.366;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:184:99,11,1,57:99:3602:11,1,57:415,16,2155:-146.77,-142.561,-431.071,-175.436,-433.245,-466.955,0,-257.812,-290.687,-274.666 0|1:108:74,1,8,21:74:2715:1,8,21:39,299,789:-42.3459,-61.4159,-272.839,-40.1396,-248.655,-249.453,0,-208.511,-187.232,-205.396 0|1:204:109,18,3,52:109:3633:18,3,52:687,115,1989:-130.289,-106.754,-395.279,-153.662,-391.258,-446.703,0,-237.596,-284.506,-278.293 dDocent_Contig_3562 157 . G A 120.528 . 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AB=0.2;ABP=34.2795;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=65;DPB=65;DPRA=0;EPP=22.5536;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=312;QR=1917;RO=56;RPL=9;RPP=22.5536;RPPR=124.613;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:23,6:23:766:6:205:-10.0541,0,-60.5164 0/1:11:9,2:9:315:2:72:-3.52539,0,-25.3768 0/0:25:24,1:24:836:1:35:0,-4.02712,-72.0608 dDocent_Contig_3568 83 . A G 540.522 . 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A C 66.0518 . AB=0.2;ABP=18.6449;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=60;DPB=60;DPRA=2;EPP=13.8677;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=48.2;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.6;PAIREDR=0.909091;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=2072;RO=55;RPL=0;RPP=13.8677;RPPR=122.441;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:27,1:27:1006:1:39:0,-5.75536,-88.1774 0/1:20:16,4:16:604:4:156:-7.82702,0,-48.6774 0/0:12:12,0:12:462:0:0:0,-3.61236,-41.9306 dDocent_Contig_3575 61 . T C 23263.3 . AB=0.702168;ABP=379.674;AC=3;AF=0.5;AN=6;AO=745;CIGAR=1X;DP=1061;DPB=1061;DPRA=0;EPP=1620.76;EPPR=684.853;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.993631;PAO=0;PQA=0;PQR=0;PRO=0;QA=29455;QR=12321;RO=314;RPL=745;RPP=1620.76;RPPR=684.853;RPR=0;RUN=1;SAF=745;SAP=1620.76;SAR=0;SRF=314;SRP=684.853;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:477:123,353:123:4763:353:13953:-1111.2,0,-284.991 0/1:235:77,157:77:2998:157:6204:-487.613,0,-199.394 0/1:349:114,235:114:4560:235:9298:-731.231,0,-305.258 dDocent_Contig_3577 38 . T C 194.445 . AB=0.208333;ABP=38.4777;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=71;DPB=71;DPRA=1.04348;EPP=24.725;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.983607;PAO=0;PQA=0;PQR=0;PRO=0;QA=394;QR=2308;RO=61;RPL=0;RPP=24.725;RPPR=135.47;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:875:0:0:0,-6.92369,-79.0697 0/1:21:17,4:17:641:4:160:-8.46217,0,-51.7041 0/1:27:21,6:21:792:6:234:-13.3011,0,-63.4787 dDocent_Contig_3578 64 . T C 183.955 . AB=0.307692;ABP=11.3621;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=43;DPB=43;DPRA=3.05882;EPP=20.3821;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=301;QR=1376;RO=35;RPL=8;RPP=20.3821;RPPR=79.0118;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:433:0:0:0,-3.31133,-39.3212 0/1:26:18,8:18:703:8:301:-19.6173,0,-55.7644 0/0:6:6,0:6:240:0:0:0,-1.80618,-21.9757 dDocent_Contig_3579 68 . G A 153.702 . 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AB=0.515625;ABP=3.14602;AC=3;AF=0.5;AN=6;AO=33;CIGAR=1X;DP=64;DPB=64;DPRA=0;EPP=74.6689;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1102;QR=1007;RO=31;RPL=33;RPP=74.6689;RPPR=70.3259;RPR=0;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:9,13:9:282:13:430:-32.3947,0,-19.063 0/1:16:7,9:7:236:9:306:-23.0542,0,-16.7536 0/1:26:15,11:15:489:11:366:-25.4338,0,-36.4953 dDocent_Contig_3581 66 . G A 1131.24 . AB=0.547945;ABP=4.46786;AC=3;AF=0.5;AN=6;AO=40;CIGAR=1X;DP=73;DPB=73;DPRA=0;EPP=89.8692;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1531;QR=1287;RO=33;RPL=40;RPP=89.8692;RPPR=74.6689;RPR=0;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:12,16:12:474:16:609:-46.7125,0,-34.5824 0/1:22:14,8:14:547:8:311:-21.7298,0,-42.952 0/1:23:7,16:7:266:16:611:-48.3983,0,-17.3725 dDocent_Contig_3582 13 . A G 116.859 . AB=0.135417;ABP=113.846;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=139;DPB=139;DPRA=0;EPP=37.7539;EPPR=270.101;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=587;QR=4869;RO=123;RPL=0;RPP=37.7539;RPPR=270.101;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:38,4:38:1496:4:146:-0.849381,0,-122.241 0/0:43:40,3:40:1588:3:121:0,-1.66409,-131.874 0/1:54:45,9:45:1785:9:320:-12.8686,0,-144.605 dDocent_Contig_3583 111 . T C 741.018 . AB=0.423913;ABP=7.63648;AC=3;AF=0.5;AN=6;AO=39;CIGAR=1X2M;DP=92;DPB=92;DPRA=0;EPP=87.6977;EPPR=107.241;GTI=0;LEN=1;MEANALT=2;MQM=47.3846;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.974359;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1162;QR=1552;RO=48;RPL=0;RPP=87.6977;RPPR=107.241;RPR=39;RUN=1;SAF=0;SAP=87.6977;SAR=39;SRF=0;SRP=107.241;SRR=48;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:30:16,0,14,0:16:536:0,14,0:0,380,0:-24.8313,-29.6478,-73.0932,0,-43.7439,-39.5295,-29.6478,-73.0932,-43.7439,-73.0932 0|1:32:11,0,18,2:11:335:0,18,2:0,556,66:-41.028,-44.3393,-71.173,0,-26.886,-21.4675,-39.0593,-65.8944,-21.6031,-65.2924 0|1:30:21,2,7,0:21:681:2,7,0:68,226,0:-11.9593,-15.3415,-69.6917,0,-52.1097,-52.9585,-18.2809,-70.2938,-55.0657,-73.2524 dDocent_Contig_3584 17 . A G 150.635 . AB=0.12;ABP=159.791;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=185;DPB=185;DPRA=0;EPP=37.7539;EPPR=369.989;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=644;QR=6730;RO=169;RPL=0;RPP=37.7539;RPPR=369.989;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=169;SRP=369.989;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:60:59,1:59:2348:1:41:0,-13.9672,-207.384 0/1:66:58,8:58:2309:8:320:-9.29969,0,-188.109 0/1:59:52,7:52:2073:7:283:-8.08261,0,-168.993 dDocent_Contig_3586 37 . A G 3025.51 . AB=0.534884;ABP=3.91929;AC=4;AF=0.666667;AN=6;AO=97;CIGAR=1X1M1X;DP=140;DPB=140;DPRA=0;EPP=213.643;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.976744;PAO=0;PQA=0;PQR=0;PRO=0;QA=3788;QR=1694;RO=43;RPL=0;RPP=213.643;RPPR=96.3836;RPR=97;RUN=1;SAF=97;SAP=213.643;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:54:3,51:3:118:51:1970:-166.519,-5.2529,0 0|1:50:30,20:30:1195:20:786:-56.0122,0,-92.7815 0|1:36:10,26:10:381:26:1032:-82.3384,0,-23.8063 dDocent_Contig_3587 131 . A G 44.0957 . AB=0.133333;ABP=55.5599;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=167;DPB=167;DPRA=0.737705;EPP=16.0391;EPPR=352.617;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=206;QR=4979;RO=161;RPL=0;RPP=16.0391;RPPR=352.617;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=352.617;SRR=161;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:39,6:39:1235:6:206:-5.33037,0,-97.891 0/0:76:76,0:76:2280:0:0:0,-22.8783,-205.454 0/0:46:46,0:46:1464:0:0:0,-13.8474,-132.043 dDocent_Contig_3589 33 . A G 1374.99 . AB=0.296296;ABP=71.1302;AC=3;AF=0.5;AN=6;AO=56;CIGAR=1X;DP=189;DPB=189;DPRA=0;EPP=124.613;EPPR=289.645;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2191;QR=5200;RO=132;RPL=0;RPP=124.613;RPPR=289.645;RPR=56;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=132;SRP=289.645;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:42,14:42:1609:14:551:-33.0747,0,-128.19 0/1:85:55,29:55:2192:29:1143:-77.53,0,-171.834 0/1:48:35,13:35:1399:13:497:-30.6115,0,-111.72 dDocent_Contig_3590 37 . G T 84.177 . AB=0.122642;ABP=134.118;AC=1;AF=0.166667;AN=6;AO=21;CIGAR=1X;DP=406;DPB=406;DPRA=0;EPP=48.6112;EPPR=839.027;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.935065;PAO=0;PQA=0;PQR=0;PRO=0;QA=755;QR=15220;RO=385;RPL=0;RPP=48.6112;RPPR=839.027;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=385;SRP=839.027;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:133:132,1:132:5193:1:33:0,-36.7379,-463.961 0/1:106:93,13:93:3667:13:458:-9.63955,0,-298.161 0/0:167:160,7:160:6360:7:264:0,-26.1552,-548.026 dDocent_Contig_3591 58 . T C 234.607 . AB=0.23913;ABP=30.2009;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=79;DPB=79;DPRA=0.69697;EPP=26.8965;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=432;QR=2665;RO=68;RPL=11;RPP=26.8965;RPPR=150.67;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1265:0:0:0,-9.93399,-114.119 0/1:21:17,4:17:682:4:158:-8.27885,0,-55.3891 0/1:25:18,7:18:718:7:274:-17.5006,0,-57.4201 dDocent_Contig_3592 179 . A T 96.9456 . AB=0.135135;ABP=88.5781;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=110;DPB=110;DPRA=1.02778;EPP=24.725;EPPR=220.158;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=373;QR=3946;RO=100;RPL=10;RPP=24.725;RPPR=220.158;RPR=0;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=220.158;SRR=100;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:28,6:28:1108:6:209:-8.90181,0,-89.7724 0/0:36:36,0:36:1397:0:0:0,-10.8371,-125.988 0/1:40:36,4:36:1441:4:164:-3.1087,0,-117.899 dDocent_Contig_3593 61 . A T 409.848 . AB=0.226667;ABP=51.6802;AC=1;AF=0.166667;AN=6;AO=17;CIGAR=3X;DP=130;DPB=130;DPRA=0.681818;EPP=39.9253;EPPR=231.015;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=672;QR=4040;RO=105;RPL=17;RPP=39.9253;RPPR=231.015;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:42:27,14,0:27:1043:14,0:553,0:-37.6769,0,-81.7449,-45.8047,-85.9593,-131.468 0|0:33:26,3,4:26:1002:3,4:119,163:-5.62669,-3.6629,-85.0122,0,-72.465,-81.0572 0|0:55:52,0,3:52:1995:0,3:0,122:0,-15.6536,-179.362,-5.18416,-169.297,-168.394 dDocent_Contig_3596 17 . T C 997.56 . AB=0.413793;ABP=8.62618;AC=3;AF=0.5;AN=6;AO=36;CIGAR=1X2M1X;DP=87;DPB=87;DPRA=0;EPP=81.1833;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1429;QR=2013;RO=51;RPL=0;RPP=81.1833;RPPR=113.755;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:14,9:14:542:9:357:-25.5683,0,-42.1977 0|1:30:22,8:22:876:8:317:-19.8655,0,-70.1223 0|1:34:15,19:15:595:19:755:-58.0389,0,-43.6549 dDocent_Contig_3597 98 . N T 1889.85 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=62;CIGAR=1X;DP=62;DPB=62;DPRA=0;EPP=137.642;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.967742;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2084;QR=0;RO=0;RPL=62;RPP=137.642;RPPR=0;RPR=0;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:29:0,29:0:0:29:966:-87.2447,-8.72987,0 1/1:16:0,16:0:0:16:537:-48.6498,-4.81648,0 1/1:17:0,17:0:0:17:581:-52.6138,-5.11751,0 dDocent_Contig_3598 46 . C G 65.0618 . AB=0.117647;ABP=89.3583;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=86;DPB=86;DPRA=1.88889;EPP=20.3821;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.987179;PAO=0;PQA=0;PQR=0;PRO=0;QA=317;QR=3099;RO=78;RPL=0;RPP=20.3821;RPPR=172.385;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:710:0:0:0,-5.41854,-64.2269 0/1:50:45,5:45:1783:5:198:-3.14588,0,-145.623 0/1:18:15,3:15:606:3:119:-5.67647,0,-49.4593 dDocent_Contig_3600 28 . A C 54.6551 . AB=0.166667;ABP=37.7539;AC=3;AF=0.5;AN=6;AO=6;CIGAR=1X;DP=36;DPB=36;DPRA=0;EPP=16.0391;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=206;QR=1160;RO=30;RPL=0;RPP=16.0391;RPPR=68.1545;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:9,1:9:345:1:41:-1.08427,0,-28.3984 0/1:16:14,2:14:541:2:71:-1.92542,0,-44.2177 0/1:10:7,3:7:274:3:94:-5.75818,0,-22.017 dDocent_Contig_3601 26 . A T 107.911 . AB=0.171429;ABP=35.8306;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=143;DPB=143;DPRA=0.648148;EPP=16.0391;EPPR=300.502;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=5407;RO=137;RPL=0;RPP=16.0391;RPPR=300.502;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=137;SRP=300.502;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:29,6:29:1136:6:243:-11.7119,0,-91.9864 0/0:79:79,0:79:3101:0:0:0,-23.7814,-279.179 0/0:29:29,0:29:1170:0:0:0,-8.72987,-105.577 dDocent_Contig_3602 109 . C T 30.686 . AB=0.181818;ABP=22.3561;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=48;DPB=48;DPRA=1.69231;EPP=11.6962;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=1439;RO=44;RPL=0;RPP=11.6962;RPPR=98.5551;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=98.5551;SRR=44;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:496:0:0:0,-4.51545,-44.9572 0/1:22:18,4:18:577:4:118:-4.29007,0,-45.6124 0/0:11:11,0:11:366:0:0:0,-3.31133,-33.2618 dDocent_Contig_3603 50 . T A 135.569 . AB=0.163265;ABP=51.2702;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=158;DPB=158;DPRA=0;EPP=31.2394;EPPR=267.915;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.972414;PAO=0;PQA=0;PQR=0;PRO=0;QA=524;QR=5705;RO=145;RPL=13;RPP=31.2394;RPPR=252.22;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=143;SRP=300.742;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:62:60,2:60:2352:2:79:0,-11.1662,-204.346 0/0:47:44,3:44:1716:3:121:0,-2.86842,-143.389 0/1:49:41,8:41:1637:8:324:-14.7787,0,-132.815 dDocent_Contig_3606 1 . N T 927.106 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=31;CIGAR=1X;DP=31;DPB=31;DPRA=0;EPP=70.3259;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=57;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1036;QR=0;RO=0;RPL=0;RPP=70.3259;RPPR=0;RPR=31;RUN=1;SAF=0;SAP=70.3259;SAR=31;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:7:0,7:0:0:7:228:-20.8384,-2.10721,0 1/1:15:0,15:0:0:15:498:-44.432,-4.51545,0 1/1:9:0,9:0:0:9:310:-26.963,-2.70927,0 dDocent_Contig_3608 10 . G A 2281.23 . AB=0.546763;ABP=5.65044;AC=3;AF=0.5;AN=6;AO=76;CIGAR=1X;DP=139;DPB=139;DPRA=0;EPP=168.042;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3031;QR=2517;RO=63;RPL=0;RPP=168.042;RPPR=139.813;RPR=76;RUN=1;SAF=76;SAP=168.042;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:18,30:18:707:30:1198:-93.6492,0,-49.5085 0/1:29:5,24:5:201:24:952:-77.2546,0,-9.74102 0/1:62:40,22:40:1609:22:881:-60.9359,0,-126.377 dDocent_Contig_3611 18 . C A 2089.46 . AB=0.426901;ABP=10.947;AC=3;AF=0.5;AN=6;AO=73;CIGAR=1X;DP=171;DPB=171;DPRA=0;EPP=161.528;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2925;QR=3859;RO=98;RPL=0;RPP=161.528;RPPR=215.815;RPR=73;RUN=1;SAF=73;SAP=161.528;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:35,19:35:1371:19:746:-51.2044,0,-107.394 0/1:69:45,24:45:1772:24:968:-66.646,0,-138.934 0/1:48:18,30:18:716:30:1211:-94.8122,0,-50.3182 dDocent_Contig_3612 1 . N G 65.5698 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_3614 87 . C G 200.615 . AB=0.384615;ABP=6.01695;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=70;DPB=70;DPRA=1.18182;EPP=24.725;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=320;QR=2019;RO=60;RPL=10;RPP=24.725;RPPR=133.299;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:644:0:0:0,-6.0206,-58.2592 0/1:26:16,10:16:552:10:320:-21.2834,0,-42.1772 0/0:24:24,0:24:823:0:0:0,-7.22472,-74.3863 dDocent_Contig_3616 1 . N G 73.1346 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:77:-7.30914,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_3617 98 . N A 136.001 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 dDocent_Contig_3618 13 . G A 433.853 . AB=0.25;ABP=44.2683;AC=2;AF=0.333333;AN=6;AO=19;CIGAR=1X1M1X;DP=127;DPB=127;DPRA=0.745098;EPP=44.2683;EPPR=237.529;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=754;QR=4269;RO=108;RPL=0;RPP=44.2683;RPPR=237.529;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:43:30,13:30:1183:13:513:-33.5719,0,-93.8144 0|1:33:27,6:27:1057:6:241:-12.1321,0,-85.4931 0|0:51:51,0:51:2029:0:0:0,-15.3525,-182.81 dDocent_Contig_3619 107 . N A 132.209 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=136;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:66:-6.26818,-0.60206,0 dDocent_Contig_3620 50 . T C 347.079 . AB=0.235294;ABP=44.396;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X;DP=214;DPB=214;DPRA=0.931507;EPP=37.7539;EPPR=432.962;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=623;QR=7781;RO=198;RPL=16;RPP=37.7539;RPPR=432.962;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=198;SRP=432.962;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:73:73,0:73:2874:0:0:0,-21.9752,-258.773 0/0:73:73,0:73:2844:0:0:0,-21.9752,-256.074 0/1:68:52,16:52:2063:16:623:-35.9297,0,-165.391 dDocent_Contig_3621 78 . G A 92.5267 . AB=0.214286;ABP=22.8638;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=84;DPB=84;DPRA=1.25;EPP=18.2106;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=2655;RO=77;RPL=7;RPP=18.2106;RPPR=170.214;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:22,6:22:745:6:203:-10.1735,0,-58.9357 0/0:24:24,0:24:840:0:0:0,-7.22472,-75.9184 0/0:32:31,1:31:1070:1:35:0,-6.13433,-93.1108 dDocent_Contig_3622 10 . A C 54.6342 . AB=0.115385;ABP=69.8248;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=117;DPB=117;DPRA=1.6;EPP=16.0391;EPPR=244.044;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=4392;RO=111;RPL=0;RPP=16.0391;RPPR=244.044;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=111;SRP=244.044;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:45:45,0:45:1748:0:0:0,-13.5463,-157.541 0/1:52:46,6:46:1836:6:244:-6.68527,0,-149.801 0/0:20:20,0:20:808:0:0:0,-6.0206,-73.0359 dDocent_Contig_3623 15 . C T 916.625 . AB=0.122449;ABP=245.683;AC=0;AF=0;AN=6;AO=24;CIGAR=2X1M;DP=196;DPB=196;DPRA=0;EPP=55.1256;EPPR=194.1;GTI=0;LEN=1;MEANALT=5;MQM=41;MQMR=49.9545;NS=3;NUMALT=5;ODDS=0;PAIRED=0.125;PAIREDR=0.727273;PAO=0;PQA=0;PQR=0;PRO=0;QA=877;QR=3486;RO=88;RPL=0;RPP=55.1256;RPPR=194.1;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:79:37,0,12,15,3,9:37:1458:0,12,15,3,9:0,425,545,121,362:-32.5337,-43.6718,-150.562,-11.2278,-118.111,-114.498,0,-106.887,-74.4363,-102.371,-33.6949,-140.587,-108.135,-96.9105,-139.684,-13.8298,-120.725,-88.2727,-77.0479,-110.749,-118.016 0|0:70:27,4,9,17,0,10:27:1069:4,9,17,0,10:158,330,672,0,393:-47.1871,-42.3102,-121.13,-29.8995,-96.9162,-107.211,0,-67.0264,-54.6125,-74.914,-55.3149,-122.334,-109.92,-80.0315,-135.338,-22.9848,-90.0066,-77.5926,-47.7005,-103.011,-100.001 0|0:47:24,0,3,7,5,6:24:959:0,3,7,5,6:0,122,278,203,240:-15.6583,-22.883,-88.765,-13.2318,-79.1111,-78.208,0,-65.8762,-56.2216,-63.769,-6.13866,-72.0182,-62.3637,-49.1277,-70.513,-3.11255,-68.9903,-59.3358,-46.0996,-52.2421,-67.1841 dDocent_Contig_3624 11 . A G 3730 . AB=0.120588;ABP=428.134;AC=0;AF=0;AN=6;AO=41;CIGAR=1X2M1X3M1X2M1X;DP=340;DPB=340;DPRA=0;EPP=92.0407;EPPR=109.412;GTI=0;LEN=1;MEANALT=11.3333;MQM=43.7317;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1594;QR=1898;RO=49;RPL=0;RPP=92.0407;RPPR=109.412;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:92:6,14,23,10,33:6:238:14,23,10,33:525,892,381,1296:-156.664,-119.471,-134.85,-86.3545,-66.9517,-99.0243,-127.22,-107.816,-74.6985,-143.803,-52.525,-33.1236,0,-40.8687,-62.1854 0|0:158:33,15,36,37,13:33:1280:15,36,37,13:590,1414,1438,487:-118.07,-82.4286,-183.077,-12.6837,-72.274,-107.012,-10.155,-69.7453,0,-104.182,-88.1262,-147.715,-77.9716,-75.4428,-189.376 0|0:90:10,12,19,23,10:10:380:12,19,23,10:479,750,913,396:-101.983,-68.6499,-96.1955,-43.7406,-38.5557,-69.1797,-30.0963,-24.9115,0,-54.3317,-72.4985,-67.3134,-42.4038,-28.7594,-100.647 dDocent_Contig_3625 10 . A T 194.18 . AB=0.16;ABP=78.317;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=115;DPB=115;DPRA=0.9375;EPP=29.068;EPPR=226.672;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=484;QR=4071;RO=103;RPL=0;RPP=29.068;RPPR=226.672;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:40,0:40:1592:0:0:0,-12.0412,-143.523 0/1:26:22,4:22:879:4:161:-7.04849,0,-71.5933 0/1:49:41,8:41:1600:8:323:-14.6883,0,-129.49 dDocent_Contig_3626 93 . A G 131.659 . AB=0.428571;ABP=3.63072;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=47;DPB=47;DPRA=0.848485;EPP=16.0391;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=1398;RO=41;RPL=6;RPP=16.0391;RPPR=92.0407;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:489:0:0:0,-4.21442,-44.3421 0/1:14:8,6:8:269:6:203:-14.3877,0,-20.3232 0/0:19:19,0:19:640:0:0:0,-5.71957,-57.9159 dDocent_Contig_3627 10 . T A 413.674 . AB=0.119048;ABP=55.9529;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=4M1X11M;DP=63;DPB=61.625;DPRA=0;EPP=13.8677;EPPR=55.1256;GTI=0;LEN=1;MEANALT=6.5;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=926;RO=24;RPL=0;RPP=13.8677;RPPR=55.1256;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:21:9,0,1,2,0,9:9:341:0,1,2,0,9:0,39,76,0,362:-27.1392,-29.8485,-57.7968,-26.712,-54.6592,-54.3582,-23.619,-51.5648,-48.4274,-50.9628,-29.8485,-57.7968,-54.6592,-51.5648,-57.7968,0,-27.9545,-24.8163,-21.7214,-27.9545,-25.2452 0|0:24:7,3,4,3,2,2:7:272:3,4,3,2,2:110,151,108,81,80:-10.2365,-3.39247,-24.8501,0,-13.4125,-21.1584,-3.53276,-16.9435,-13.5526,-24.99,-5.65878,-19.0703,-15.6792,-19.2103,-27.4186,-5.74844,-19.1598,-15.7688,-19.2998,-21.4271,-27.508 0|1:18:8,0,2,3,3,0:8:313:0,2,3,3,0:0,77,117,122,0:-7.65996,-10.0682,-35.8019,-3.74828,-29.4806,-28.8785,-0.452681,-26.1849,-19.8639,-25.2819,0,-25.736,-19.4145,-16.1186,-24.8329,-10.0682,-35.8019,-29.4806,-26.1849,-25.736,-35.8019 dDocent_Contig_3629 15 . A C 10791 . AB=0.115689;ABP=812.495;AC=6;AF=1;AN=6;AO=73;CIGAR=9M1X3M1X1M;DP=631;DPB=600.467;DPRA=0;EPP=161.528;EPPR=48.6112;GTI=0;LEN=1;MEANALT=23.3333;MQM=59.3151;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=0.273973;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2839;QR=806;RO=21;RPL=0;RPP=161.528;RPPR=48.6112;RPR=73;RUN=1;SAF=73;SAP=161.528;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:232:2,14,92,21,15,28:2:77:14,92,21,15,28:521,3424,790,586,1101:-361.805,-319.951,-322.059,-84.2421,-48.1093,-62.8699,-300.199,-264.066,-28.3578,-300.2,-314.297,-278.164,-42.4543,-258.412,-316.104,-271.844,-235.711,0,-215.958,-230.056,-269.738 1|1:211:8,16,115,13,4,20:8:313:16,115,13,4,20:591,4199,493,158,789:-376.195,-330.572,-351.493,-39.1846,-16.8923,-30.3035,-339.096,-316.802,-25.4153,-360.919,-365.605,-343.311,-51.9233,-351.834,-390.138,-313.684,-291.389,0,-299.913,-326.422,-333.4 1|1:188:11,5,104,5,8,25:11:416:5,104,5,8,25:194,3771,181,315,949:-344.82,-332.321,-364.911,-43.4223,-61.707,-46.2104,-333.821,-352.107,-63.2087,-366.412,-322.47,-340.755,-51.8558,-342.256,-354.158,-270.612,-288.897,0,-290.398,-279.046,-297.182 dDocent_Contig_3630 25 . G A 53.5394 . AB=0.4;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=17;DPB=17;DPRA=0.833333;EPP=7.35324;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=4.33681e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=611;RO=15;RPL=0;RPP=7.35324;RPPR=35.5824;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:5:3,2:3:122:2:82:-6.27453,0,-9.86734 0/0:5:5,0:5:204:0:0:0,-1.50515,-18.744 0/0:7:7,0:7:285:0:0:0,-2.10721,-26.0244 dDocent_Contig_3631 9 . T A 63.3017 . AB=0.132075;ABP=65.3275;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=83;DPB=83;DPRA=0;EPP=20.3821;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=298;QR=2877;RO=75;RPL=0;RPP=20.3821;RPPR=165.871;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:18,2:18:694:2:69:-0.531685,0,-56.7731 0/0:30:29,1:29:1095:1:39:0,-5.13434,-94.9562 0/1:33:28,5:28:1088:5:190:-7.53275,0,-88.2901 dDocent_Contig_3632 7 . T C 305.902 . AB=0.28125;ABP=16.3106;AC=4;AF=0.666667;AN=6;AO=12;CIGAR=1X;DP=35;DPB=35;DPRA=0;EPP=29.068;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=460;QR=864;RO=23;RPL=0;RPP=29.068;RPPR=52.9542;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:8,7:8:303:7:266:-19.7863,0,-23.1131 0/1:17:15,2:15:561:2:78:-2.28596,0,-45.7112 1/1:3:0,3:0:0:3:116:-10.8177,-0.90309,0 dDocent_Contig_3633 13 . C T 7857.36 . AB=0.153846;ABP=530.678;AC=3;AF=0.5;AN=6;AO=78;CIGAR=1M1D5M3X;DP=507;DPB=887.8;DPRA=0;EPP=172.385;EPPR=37.7539;GTI=0;LEN=1;MEANALT=17.6667;MQM=35.2949;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=0.807692;PAIREDR=1;PAO=534;PQA=17507.2;PQR=0;PRO=0;QA=2423;QR=617;RO=16;RPL=0;RPP=172.385;RPPR=37.7539;RPR=78;RUN=1;SAF=78;SAP=172.385;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:124:6,5,12,53,7,3:6:229:5,12,53,7,3:176,459,1827,264,114:-157.676,-145.489,-162.755,-123.264,-128.041,-138.42,-17.4014,-22.1733,0,-20.1809,-137.986,-142.764,-120.539,-14.683,-154.649,-150.506,-155.284,-133.057,-27.177,-147.781,-168.375 1|0:118:2,6,21,58,6,5:2:75:6,21,58,6,5:225,563,2020,222,200:-191.826,-174.52,-178.855,-151.705,-139.941,-151.523,-34.4287,-22.6789,0,-23.103,-174.316,-162.549,-139.737,-22.4744,-178.651,-176.75,-164.983,-142.169,-24.903,-164.779,-181.386 1|0:265:8,2,45,123,3,14:8:313:2,45,123,3,14:77,1401,4581,116,559:-439.95,-436.098,-461.228,-336.707,-356.178,-348.891,-79.8148,-99.2787,0,-68.509,-432.865,-452.338,-352.945,-96.0471,-457.694,-399.24,-418.712,-319.323,-62.4389,-415.479,-420.757 dDocent_Contig_3634 22 . C T 1722.94 . AB=0.225904;ABP=219.66;AC=3;AF=0.5;AN=6;AO=75;CIGAR=1X6M;DP=332;DPB=332;DPRA=0;EPP=165.871;EPPR=398.218;GTI=0;LEN=1;MEANALT=7;MQM=52.4933;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=0.945055;PAO=0;PQA=0;PQR=0;PRO=0;QA=2852;QR=7111;RO=182;RPL=0;RPP=165.871;RPPR=398.218;RPR=75;RUN=1;SAF=75;SAP=165.871;SAR=0;SRF=182;SRP=398.218;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:150:65,11,13,2,8,49:65:2526:11,13,2,8,49:303,515,68,308,1831:-127.562,-126.159,-330.432,-127.99,-314.598,-331.656,-141.619,-328.234,-330.06,-348.605,-122.236,-308.855,-310.681,-324.319,-327.42,0,-186.667,-188.496,-202.127,-182.747,-192.886 0|1:82:56,5,0,3,2,13:56:2181:5,0,3,2,13:133,0,114,60,524:-26.0784,-33.853,-211.588,-42.9361,-213.093,-222.196,-33.6839,-203.843,-212.946,-212.043,-38.1438,-208.298,-217.401,-208.151,-216.799,0,-170.196,-179.297,-170.047,-174.502,-175.384 0|1:100:61,5,3,10,3,13:61:2404:5,3,10,3,13:135,121,392,118,497:-22.3703,-31.4564,-227.741,-36.2591,-224.766,-233.148,-8.58603,-197.114,-201.918,-203.388,-31.0236,-219.541,-224.345,-196.692,-227.922,0,-188.532,-193.336,-165.682,-188.109,-193.902 dDocent_Contig_3635 15 . C T 84.2788 . AB=0.172414;ABP=30.0414;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=45;DPB=45;DPRA=3.625;EPP=13.8677;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=1601;RO=40;RPL=0;RPP=13.8677;RPPR=89.8692;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:362:0:0:0,-2.70927,-32.944 0/1:29:24,5:24:953:5:200:-9.64967,0,-77.3404 0/0:7:7,0:7:286:0:0:0,-2.10721,-26.1148 dDocent_Contig_3636 70 . T A 176.124 . AB=0.174603;ABP=60.9507;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=86;DPB=86;DPRA=1.36957;EPP=26.8965;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=424;QR=2762;RO=75;RPL=11;RPP=26.8965;RPPR=165.871;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:863:0:0:0,-6.92369,-77.9874 0/1:53:45,8:45:1661:8:309:-12.2165,0,-133.808 0/1:10:7,3:7:238:3:115:-7.71459,0,-18.7403 dDocent_Contig_3637 174 . G A 78.587 . AB=0.375;ABP=4.09604;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=23;DPB=23;DPRA=1.06667;EPP=9.52472;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=789;RO=20;RPL=3;RPP=9.52472;RPPR=46.4397;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:5,3:5:193:3:120:-8.77945,0,-15.332 0/0:7:7,0:7:285:0:0:0,-2.10721,-26.0244 0/0:8:8,0:8:311:0:0:0,-2.40824,-28.3476 dDocent_Contig_3639 7 . T C 64.0948 . AB=0.3;ABP=6.48466;AC=1;AF=0.25;AN=4;AO=3;CIGAR=1X;DP=19;DPB=19;DPRA=1.11111;EPP=9.52472;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=611;RO=16;RPL=0;RPP=9.52472;RPPR=37.7539;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:346:0:0:0,-2.70927,-31.4992 0/1:10:7,3:7:265:3:116:-7.8074,0,-21.2005 ./.:.:.:.:.:.:.:. dDocent_Contig_3640 1 . N A 36.3438 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=13;MQMR=0;NS=1;NUMALT=1;ODDS=5.29832;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:104:-3.63211,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_3641 62 . C A 83.6242 . AB=0.192308;ABP=24.391;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=43;DPB=43;DPRA=0;EPP=16.0391;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=236;QR=1466;RO=37;RPL=6;RPP=16.0391;RPPR=83.3548;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:14,2:14:548:2:79:-2.68115,0,-44.8462 0/0:17:16,1:16:643:1:39:0,-1.22095,-54.3083 0/1:10:7,3:7:275:3:118:-7.99221,0,-22.105 dDocent_Contig_3642 123 . A T 185.948 . AB=0.421053;ABP=4.03889;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=34;DPB=34;DPRA=0.633333;EPP=20.3821;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=289;QR=944;RO=26;RPL=0;RPP=20.3821;RPPR=59.4686;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:550:0:0:0,-4.51545,-49.839 0/1:11:4,7:4:148:7:252:-19.7164,0,-10.3706 0/1:8:7,1:7:246:1:37:-1.28959,0,-20.0719 dDocent_Contig_3643 9 . T A 69.2895 . AB=0.129032;ABP=77.1206;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=85;DPB=85;DPRA=0;EPP=22.5536;EPPR=143.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.8026;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.907895;PAO=0;PQA=0;PQR=0;PRO=0;QA=341;QR=2914;RO=76;RPL=0;RPP=22.5536;RPPR=168.042;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=73;SRP=143.013;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:19,3:19:719:3:111:-3.73012,0,-58.3964 0/0:23:22,1:22:845:1:39:0,-3.02713,-72.4764 0/1:40:35,5:35:1350:5:191:-5.5169,0,-106.485 dDocent_Contig_3644 51 . T A 54.8515 . AB=0.148148;ABP=32.0437;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=29;DPB=29;DPRA=6.75;EPP=11.6962;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=965;RO=25;RPL=4;RPP=11.6962;RPPR=57.2971;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:13,3:13:495:3:120:-6.37083,0,-40.0792 0/1:11:10,1:10:394:1:41:-0.783237,0,-32.5076 0/0:2:2,0:2:76:0:0:0,-0.60206,-7.21467 dDocent_Contig_3645 71 . G C 365.54 . AB=0.538462;ABP=3.34437;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=44;DPB=44;DPRA=2.88889;EPP=33.4109;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.857143;PAIREDR=0.933333;PAO=0;PQA=0;PQR=0;PRO=0;QA=503;QR=1105;RO=30;RPL=8;RPP=3.63072;RPPR=3.29983;RPR=6;RUN=1;SAF=8;SAP=3.63072;SAR=6;SRF=16;SRP=3.29983;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:221:0:0:0,-1.80618,-20.2464 0/1:26:12,14:12:446:14:503:-37.7758,0,-32.6589 0/0:12:12,0:12:438:0:0:0,-3.61236,-39.7637 dDocent_Contig_3646 22 . T A 226.44 . AB=0.162162;ABP=76.3709;AC=0;AF=0;AN=6;AO=12;CIGAR=3X3M4X4M;DP=74;DPB=74;DPRA=0;EPP=29.068;EPPR=70.3259;GTI=0;LEN=1;MEANALT=4;MQM=13;MQMR=60;NS=3;NUMALT=6;ODDS=0;PAIRED=0;PAIREDR=0.967742;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=1216;RO=31;RPL=0;RPP=29.068;RPPR=70.3259;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:8:2,0,4,0,0,2,0:2:73:0,4,0,0,2,0:0,52,0,0,78,0:-5.90591,-6.50797,-12.5131,-4.26856,-10.2194,-9.01526,-6.50797,-12.5131,-10.2194,-12.5131,-6.50797,-12.5131,-10.2194,-12.5131,-12.5131,0,-6.05119,-3.79516,-6.05119,-6.05119,-5.44913,-6.50797,-12.5131,-10.2194,-12.5131,-12.5131,-6.05119,-12.5131 0|0:42:18,4,7,0,4,4,3:18:711:4,7,0,4,4,3:156,91,0,116,158,114:-7.60567,-0.179193,-57.547,-8.84272,-54.5457,-65.2636,-13.0242,-58.7511,-67.3708,-71.5808,-4.87533,-50.6055,-59.2326,-63.435,-62.2309,0,-45.7412,-54.3668,-58.5724,-50.4267,-57.3683,-3.66146,-49.3976,-58.0217,-62.2282,-54.0826,-49.2189,-61.3252 0|0:24:11,5,1,2,5,0,0:11:432:5,1,2,5,0,0:195,13,78,145,0,0:-12.7625,0,-34.0954,-15.4839,-35.0059,-50.741,-9.69212,-29.2262,-44.6707,-44.6648,-5.91816,-25.4382,-40.879,-35.1014,-39.9666,-16.0738,-35.6005,-51.042,-45.2669,-41.4717,-51.639,-16.0738,-35.6005,-51.042,-45.2669,-41.4717,-51.639,-51.639 dDocent_Contig_3647 13 . A G 208.475 . AB=0.173913;ABP=66.7383;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=81;DPB=81;DPRA=2.875;EPP=29.068;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=52.5;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=483;QR=2699;RO=69;RPL=0;RPP=29.068;RPPR=152.842;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:35,8:35:1369:8:325:-16.4602,0,-110.525 0/1:26:22,4:22:855:4:158:-6.70609,0,-69.4312 0/0:12:12,0:12:475:0:0:0,-3.61236,-43.0987 dDocent_Contig_3648 107 . N G 65.5698 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 dDocent_Contig_3649 116 . C T 502.467 . AB=0.0957447;ABP=136.44;AC=3;AF=0.500001;AN=6;AO=9;CIGAR=1X8M;DP=94;DPB=94;DPRA=0;EPP=22.5536;EPPR=79.0118;GTI=0;LEN=1;MEANALT=5.33333;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=293;QR=1196;RO=35;RPL=0;RPP=22.5536;RPPR=79.0118;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=79.0118;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:6,2,0,2,6,3:6:206:2,0,2,6,3:49,0,65,205,97:-14.8499,-12.8624,-28.9912,-16.656,-29.5932,-33.3908,-11.4088,-24.3485,-28.1448,-27.5427,0,-12.9532,-16.7468,-11.4997,-14.9406,-8.83037,-21.7715,-25.5669,-20.321,-8.92131,-24.6638 0|1:38:16,4,3,8,1,4:16:545:4,3,8,1,4:132,77,256,35,128:-15.8106,-9.95138,-52.9779,-14.6109,-48.1632,-57.9324,0,-33.5592,-38.2145,-41.8239,-17.7777,-51.3336,-55.9872,-41.3836,-61.7056,-10.313,-43.8697,-48.5239,-33.9202,-51.6942,-53.3385 0|1:37:13,10,3,5,4,2:13:445:10,3,5,4,2:336,104,171,140,68:-23.3029,0,-33.1111,-18.7621,-27.6676,-53.9824,-13.3367,-22.2424,-41.006,-47.9548,-15.8236,-24.7294,-43.4934,-38.0678,-50.7434,-21.7005,-30.6058,-49.3697,-43.9441,-46.4316,-57.2215 dDocent_Contig_3650 8 . T A 768.64 . AB=0.0769231;ABP=43.4331;AC=0;AF=0;AN=6;AO=2;CIGAR=1X2M10I1X4M;DP=88;DPB=170.125;DPRA=0;EPP=7.35324;EPPR=48.6112;GTI=0;LEN=1;MEANALT=6;MQM=34;MQMR=60;NS=3;NUMALT=6;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=68;QR=820;RO=21;RPL=0;RPP=7.35324;RPPR=48.6112;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:30:11,0,0,2,4,6,6:11:428:0,0,2,4,6,6:0,0,77,148,185,224:-14.7584,-18.0698,-53.2591,-18.0698,-53.2591,-53.2591,-11.7664,-46.9584,-46.9584,-46.3564,-5.95956,-41.1536,-41.1536,-34.8527,-39.9495,-3.58257,-38.766,-38.766,-32.4664,-26.6633,-36.9598,0,-35.1973,-35.1973,-28.8962,-23.0913,-20.7089,-33.3912 0|0:32:7,0,3,1,0,6,12:7:276:0,3,1,0,6,12:0,104,39,0,223,435:-32.5693,-34.6765,-57.393,-26.2258,-48.9427,-48.0396,-31.4693,-54.1863,-45.736,-53.8852,-34.6765,-57.393,-48.9427,-54.1863,-57.393,-16.518,-39.2374,-30.7875,-36.0305,-39.2374,-37.4312,0,-22.7205,-14.2727,-19.5137,-22.7205,-4.5667,-19.1082 0|0:26:3,2,7,2,0,7,4:3:116:2,7,2,0,7,4:68,266,76,0,268,150:-33.2529,-29.1857,-38.1127,-12.3386,-16.9004,-19.7622,-27.9424,-32.5019,-15.6556,-36.8702,-34.156,-38.7148,-21.8694,-37.4723,-43.6857,-12.288,-16.8499,0,-15.6051,-21.8189,-19.7117,-22.131,-26.6912,-9.84459,-25.4476,-31.6609,-9.79402,-30.4568 dDocent_Contig_3651 39 . G A 79.9354 . AB=0.0952381;ABP=32.8939;AC=0;AF=0;AN=6;AO=2;CIGAR=2M2X2M;DP=43;DPB=47.5;DPRA=0;EPP=7.35324;EPPR=50.7827;GTI=0;LEN=1;MEANALT=4;MQM=42;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=848;RO=22;RPL=0;RPP=7.35324;RPPR=50.7827;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:13:8,0,3,0,0,2:8:309:0,3,0,0,2:0,63,0,0,70:-2.8039,-5.21214,-30.6804,-1.33725,-26.766,-25.863,-5.21214,-30.6804,-26.766,-30.6804,-5.21214,-30.6804,-26.766,-30.6804,-30.6804,0,-25.5257,-21.623,-25.5257,-25.5257,-24.9236 0|0:9:6,1,0,1,0,1:6:225:1,0,1,0,1:12,0,19,0,36:-1.17226,-2.51344,-20.7278,-2.97844,-21.0288,-21.5211,-1.85906,-19.9148,-20.4002,-20.0992,-2.97844,-21.0288,-21.5211,-20.4002,-21.5211,0,-18.1256,-18.6146,-17.4958,-18.6146,-18.3135 0|0:21:8,2,0,6,2,3:8:314:2,0,6,2,3:24,0,118,79,123:-7.41807,-8.81222,-34.0877,-9.82631,-34.6898,-35.7092,-2.68791,-27.5591,-28.5604,-26.7542,-3.6437,-28.5252,-29.543,-22.3986,-28.941,0,-24.8959,-25.9132,-18.7695,-19.7435,-25.0102 dDocent_Contig_3652 14 . G A 418.614 . AB=0.143564;ABP=225.919;AC=3;AF=0.5;AN=6;AO=29;CIGAR=1X;DP=202;DPB=202;DPRA=0;EPP=65.983;EPPR=289.205;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.711;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.907514;PAO=0;PQA=0;PQR=0;PRO=0;QA=1170;QR=6835;RO=173;RPL=0;RPP=65.983;RPPR=378.675;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=162;SRP=289.205;SRR=11;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:100:86,14:86:3393:14:562:-20.8206,0,-275.336 0/1:44:39,5:39:1546:5:203:-5.40774,0,-121.291 0/1:58:48,10:48:1896:10:405:-19.3498,0,-151.986 dDocent_Contig_3653 98 . N C 226.283 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=7;CIGAR=3X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=235;QR=0;RO=0;RPL=7;RPP=18.2106;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,3:0:0:3:100:-9.3307,-0.90309,0 1|1:1:0,1:0:0:1:33:-3.29913,-0.30103,0 1|1:3:0,3:0:0:3:102:-9.51695,-0.90309,0 dDocent_Contig_3654 9 . C T 1671.08 . AB=0.708861;ABP=32.9436;AC=2;AF=0.333333;AN=6;AO=57;CIGAR=1X;DP=102;DPB=102;DPRA=0;EPP=126.784;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2179;QR=1730;RO=45;RPL=0;RPP=126.784;RPPR=100.727;RPR=57;RUN=1;SAF=57;SAP=126.784;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:22,1:22:844:1:39:0,-3.02713,-72.3864 0/1:54:19,35:19:730:35:1346:-105.171,0,-49.7754 0/1:25:4,21:4:156:21:794:-64.2556,0,-6.89154 dDocent_Contig_3656 54 . A G 74.4994 . AB=0.190476;ABP=20.4855;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=32;DPB=32;DPRA=3.81818;EPP=11.6962;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=1100;RO=28;RPL=4;RPP=11.6962;RPPR=63.8115;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:17,4:17:657:4:159:-8.37049,0,-53.1378 0/0:6:6,0:6:240:0:0:0,-1.80618,-21.9754 0/0:5:5,0:5:203:0:0:0,-1.50515,-18.6531 dDocent_Contig_3657 34 . C A 1152.97 . AB=0.557143;ABP=4.99565;AC=3;AF=0.5;AN=6;AO=39;CIGAR=1X3M1X;DP=70;DPB=70;DPRA=0;EPP=87.6977;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1545;QR=1232;RO=31;RPL=0;RPP=87.6977;RPPR=70.3259;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:9:3,6:3:121:6:238:-19.0853,0,-8.57093 0|1:18:9,9:9:359:9:346:-26.0782,0,-27.2551 0|1:43:19,24:19:752:24:961:-73.85,0,-55.0612 dDocent_Contig_3658 7 . T C 38.617 . AB=0.117647;ABP=24.5973;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X1M1X3M1X;DP=40;DPB=40;DPRA=3.4;EPP=7.35324;EPPR=70.3259;GTI=0;LEN=1;MEANALT=2;MQM=51;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=1207;RO=31;RPL=0;RPP=7.35324;RPPR=70.3259;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:17:14,2,1:14:545:2,1:78,15:-2.21527,0,-44.4407,-5.73222,-44.2764,-50.2304 0|0:18:12,0,6:12:465:0,6:0,117:-3.94289,-7.55525,-45.899,0,-38.5863,-36.7801 0|0:5:5,0,0:5:197:0,0:0,0:0,-1.50515,-18.1066,-1.50515,-18.1066,-18.1066 dDocent_Contig_3659 59 . C G 539.627 . AB=0.592593;ABP=5.02092;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=35;DPB=35;DPRA=2;EPP=39.9253;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=692;QR=716;RO=18;RPL=17;RPP=39.9253;RPPR=42.0968;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:40:-3.99568,-0.30103,0 0/0:7:7,0:7:272:0:0:0,-2.10721,-24.8455 0/1:27:11,16:11:444:16:652:-50.8849,0,-32.188 dDocent_Contig_3660 132 . G A 148.875 . AB=0.275862;ABP=15.6647;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=58;DPB=58;DPRA=2;EPP=20.3821;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=269;QR=1738;RO=50;RPL=0;RPP=20.3821;RPPR=111.584;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=111.584;SRR=50;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:21,8:21:717:8:269:-15.8083,0,-56.1148 0/0:18:18,0:18:628:0:0:0,-5.41854,-56.8458 0/0:11:11,0:11:393:0:0:0,-3.31133,-35.7109 dDocent_Contig_3661 169 . C T 318.037 . AB=0.295455;ABP=19.0002;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=55;DPB=55;DPRA=2;EPP=31.2394;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=518;QR=1635;RO=42;RPL=13;RPP=31.2394;RPPR=94.2121;RPR=0;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=94.2121;SRR=42;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:13,8:13:522:8:313:-22.2111,0,-41.0052 0/0:11:11,0:11:417:0:0:0,-3.31133,-37.87 0/1:23:18,5:18:696:5:205:-11.9113,0,-56.0417 dDocent_Contig_3662 10 . G A 129.158 . AB=0.333333;ABP=6.62942;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=63;DPB=63;DPRA=0.625;EPP=13.8677;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=2317;RO=58;RPL=0;RPP=13.8677;RPPR=128.956;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:35:35,0:35:1399:0:0:0,-10.536,-126.166 0/0:13:13,0:13:516:0:0:0,-3.91339,-46.7857 0/1:15:10,5:10:402:5:203:-14.1376,0,-32.0241 dDocent_Contig_3663 10 . G A 52.6521 . AB=0.2;ABP=14.7363;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=59;DPB=59;DPRA=0.681818;EPP=9.52472;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=2209;RO=56;RPL=0;RPP=9.52472;RPPR=124.613;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:787:0:0:0,-6.0206,-71.1501 0/1:15:12,3:12:474:3:118:-6.48706,0,-38.4923 0/0:24:24,0:24:948:0:0:0,-7.22472,-85.6203 dDocent_Contig_3664 1 . N A 105.876 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X3M1X;DP=3;DPB=16.6;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=47;MQMR=0;NS=1;NUMALT=1;ODDS=5.29832;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=275;PRO=7;QA=120;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,3:0:0:3:120:-10.5854,-0.90309,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_3665 28 . A G 472.829 . AB=0.5;ABP=3.0103;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=41;DPB=41;DPRA=2.42857;EPP=39.9253;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=657;QR=958;RO=24;RPL=0;RPP=39.9253;RPPR=55.1256;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:8,9:8:314:9:365:-28.0973,0,-23.5033 0/1:17:9,8:9:358:8:292:-21.5043,0,-27.4655 0/0:7:7,0:7:286:0:0:0,-2.10721,-26.1148 dDocent_Contig_3666 34 . G A 31.3658 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=32;DPB=32;DPRA=0.56;EPP=7.35324;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=41;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=1200;RO=30;RPL=0;RPP=7.35324;RPPR=68.1545;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:199:0:0:0,-1.50515,-18.2886 0/0:20:20,0:20:801:0:0:0,-6.0206,-72.4086 0/1:7:5,2:5:200:2:70:-4.35793,0,-16.2723 dDocent_Contig_3667 9 . T G 1740.51 . AB=0.548673;ABP=5.3355;AC=3;AF=0.5;AN=6;AO=62;CIGAR=1X2M;DP=113;DPB=113;DPRA=0;EPP=137.642;EPPR=105.07;GTI=0;LEN=1;MEANALT=1.66667;MQM=56.3871;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.983871;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2359;QR=1808;RO=47;RPL=0;RPP=137.642;RPPR=105.07;RPR=62;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:51:23,3,25:23:892:3,25:117,960:-70.7366,-68.0415,-140.428,0,-63.666,-65.7582 0|1:28:13,1,14:13:482:1,14:40,525:-38.561,-39.6681,-78.799,0,-36.6489,-35.2407 0|1:34:11,0,23:11:434:0,23:0,874:-68.4703,-71.7816,-107.497,0,-36.1045,-29.1808 dDocent_Contig_3669 36 . G A 78.6328 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=1X;DP=24;DPB=24;DPRA=0.181818;EPP=7.35324;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=881;RO=22;RPL=0;RPP=7.35324;RPPR=50.7827;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:442:0:0:0,-3.31133,-40.1349 0/0:11:11,0:11:439:0:0:0,-3.31133,-39.8652 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 dDocent_Contig_3670 114 . C T 80.6647 . AB=0.227273;ABP=17.2236;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=32;DPB=32;DPRA=4.4;EPP=13.8677;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=173;QR=902;RO=27;RPL=0;RPP=13.8677;RPPR=61.6401;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:243:0:0:0,-2.10721,-22.2089 0/1:22:17,5:17:555:5:173:-9.28755,0,-43.6363 0/0:3:3,0:3:104:0:0:0,-0.90309,-9.70309 dDocent_Contig_3671 89 . A G 385.47 . 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AB=0.22;ABP=37.059;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=26.8965;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=438;QR=1537;RO=39;RPL=0;RPP=26.8965;RPPR=87.6977;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:2,5:2:82:5:197:-15.9992,0,-5.67247 0/1:16:13,3:13:521:3:119:-6.27891,0,-42.4208 0/1:27:24,3:24:934:3:122:-3.24468,0,-76.2298 dDocent_Contig_3675 7 . T C 4216.26 . 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G A 50.9068 . AB=0.153846;ABP=30.0702;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=43;DPB=43;DPRA=3.05882;EPP=11.6962;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=153;QR=1560;RO=39;RPL=0;RPP=11.6962;RPPR=87.6977;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:204:0:0:0,-1.50515,-18.744 0/0:12:12,0:12:483:0:0:0,-3.61236,-43.8207 0/1:26:22,4:22:873:4:153:-6.31234,0,-71.0433 dDocent_Contig_3677 12 . T A 672.839 . AB=0.378788;ABP=11.433;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=66;DPB=66;DPRA=0;EPP=57.2971;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=0.609756;PAO=0;PQA=0;PQR=0;PRO=0;QA=997;QR=1621;RO=41;RPL=0;RPP=57.2971;RPPR=92.0407;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:16,2:16:647:2:74:-1.60632,0,-53.1456 0/1:19:16,3:16:633:3:116:-5.09671,0,-51.5822 0/1:29:9,20:9:341:20:807:-64.2161,0,-22.3074 dDocent_Contig_3679 9 . C T 658.244 . 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AB=0.2;ABP=18.6449;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=33;DPB=33;DPRA=0.769231;EPP=11.6962;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.965517;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=1153;RO=29;RPL=0;RPP=11.6962;RPPR=65.983;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:6,1:6:229:1:40:-1.88847,0,-18.8642 0/1:13:10,3:10:403:3:121:-7.36681,0,-32.7161 0/0:13:13,0:13:521:0:0:0,-3.91339,-47.2374 dDocent_Contig_3681 28 . C A 272.714 . 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AB=0.4;ABP=3.87889;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=57;DPB=57;DPRA=0.425532;EPP=11.6962;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=2034;RO=53;RPL=0;RPP=11.6962;RPPR=118.098;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:866:0:0:0,-6.92369,-78.2467 0/1:10:6,4:6:208:4:163:-12.0481,0,-16.0371 0/0:24:24,0:24:960:0:0:0,-7.22472,-86.7005 dDocent_Contig_3688 15 . C T 237.409 . AB=0.166667;ABP=20.3821;AC=2;AF=0.333334;AN=6;AO=3;CIGAR=1X3M;DP=49;DPB=49;DPRA=1.38462;EPP=9.52472;EPPR=81.1833;GTI=0;LEN=1;MEANALT=2;MQM=31.3333;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=83;QR=1421;RO=36;RPL=0;RPP=9.52472;RPPR=81.1833;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:18:13,0,2,3:13:505:0,2,3:0,78,83:-2.08581,-5.9992,-47.5586,0,-41.6026,-41.0005,-0.0563167,-41.5722,-35.6195,-40.6691 0|0:13:13,0,0,0:13:523:0,0,0:0,0,0:0,-3.91339,-47.4179,-3.91339,-47.4179,-47.4179,-3.91339,-47.4179,-47.4179,-47.4179 0|1:18:10,8,0,0:10:393:8,0,0:321,0,0:-23.8399,0,-30.3065,-26.8502,-32.7148,-59.1678,-26.8502,-32.7148,-59.1678,-59.1678 dDocent_Contig_3689 23 . T C 823.511 . AB=0.20915;ABP=115.43;AC=2;AF=0.333333;AN=6;AO=32;CIGAR=1X1M6D7M;DP=153;DPB=153.4;DPRA=0;EPP=72.4974;EPPR=200.614;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1217;QR=3505;RO=91;RPL=0;RPP=72.4974;RPPR=200.614;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:47:31,3,4,8:31:1190:3,4,8:118,159,286:-13.9667,-13.588,-110.37,-10.201,-98.181,-106.685,0,-87.9607,-84.5761,-95.2599 0|1:38:24,11,0,2:24:925:11,0,2:400,0,49:-25.4876,0,-72.7154,-32.7123,-76.0267,-108.685,-28.9268,-72.2341,-104.889,-104.287 0|1:68:36,18,0,13:36:1390:18,0,13:699,0,452:-46.6136,0,-108.754,-57.4507,-114.173,-171.606,-20.7261,-77.4417,-134.872,-130.959 dDocent_Contig_3690 42 . C A 147.953 . AB=0.285714;ABP=11.386;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=76;DPB=76;DPRA=0.763636;EPP=16.0391;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.971429;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=2733;RO=70;RPL=0;RPP=16.0391;RPPR=155.013;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:37,0:37:1437:0:0:0,-11.1381,-129.573 0/0:18:18,0:18:695:0:0:0,-5.41854,-62.8624 0/1:21:15,6:15:601:6:244:-16.0172,0,-48.1057 dDocent_Contig_3691 10 . C T 406.149 . AB=0.246377;ABP=41.5618;AC=1;AF=0.166667;AN=6;AO=21;CIGAR=1X;DP=197;DPB=197;DPRA=0;EPP=48.6112;EPPR=385.189;GTI=0;LEN=1;MEANALT=1;MQM=58.1429;MQMR=59.5;NS=3;NUMALT=1;ODDS=0;PAIRED=0.904762;PAIREDR=0.9375;PAO=0;PQA=0;PQR=0;PRO=0;QA=853;QR=7051;RO=176;RPL=0;RPP=48.6112;RPPR=385.189;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=176;SRP=385.189;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:55:54,1:54:2170:1:40:0,-12.561,-191.368 0/0:73:70,3:70:2794:3:121:0,-10.9202,-238.982 0/1:69:52,17:52:2087:17:692:-41.8368,0,-167.215 dDocent_Contig_3692 9 . G T 4613.42 . AB=0.228311;ABP=564.658;AC=3;AF=0.5;AN=6;AO=200;CIGAR=1M1X1M;DP=876;DPB=846;DPRA=0;EPP=437.305;EPPR=1147.39;GTI=0;LEN=1;MEANALT=6;MQM=59.175;MQMR=55.3804;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.0376648;PAO=0;PQA=0;PQR=0;PRO=0;QA=7630;QR=20278;RO=531;RPL=0;RPP=437.305;RPPR=1156.06;RPR=200;RUN=1;SAF=200;SAP=437.305;SAR=0;SRF=530;SRP=1147.39;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:311:186,35,68,19:186:7126:35,68,19:1311,2567,749:-153.975,-103.153,-667.515,0,-468.091,-554.433,-157.361,-625.443,-522.296,-726.535 0|1:282:163,26,73,5:163:6239:26,73,5:982,2789,194:-179.181,-147.765,-621.801,0,-401.378,-459.889,-214.313,-615.69,-467.927,-694.67 0|1:283:182,26,59,8:182:6913:26,59,8:993,2274,326:-131.903,-105.709,-636.73,0,-457.87,-521.092,-164.539,-622.403,-516.699,-700.977 dDocent_Contig_3693 107 . N C 1518.64 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=59;CIGAR=1X;DP=59;DPB=59;DPRA=0;EPP=131.127;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=57.7797;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1674;QR=0;RO=0;RPL=0;RPP=131.127;RPPR=0;RPR=59;RUN=1;SAF=0;SAP=131.127;SAR=59;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:15:0,15:0:0:15:401:-36.2797,-4.51545,0 1/1:22:0,22:0:0:22:599:-54.1617,-6.62266,0 1/1:22:0,22:0:0:22:674:-60.9458,-6.62266,0 dDocent_Contig_3694 56 . C A 143.576 . AB=0.333333;ABP=7.35324;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=29;DPB=29;DPRA=0.818182;EPP=16.0391;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=237;QR=914;RO=23;RPL=6;RPP=16.0391;RPPR=52.9542;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:8,2:8:318:2:78:-4.393,0,-25.9737 0/1:8:4,4:4:156:4:159:-12.2832,0,-12.0082 0/0:11:11,0:11:440:0:0:0,-3.31133,-39.9543 dDocent_Contig_3695 96 . T C 137.588 . AB=0.291667;ABP=12.0581;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=26;DPB=26;DPRA=6;EPP=18.2106;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=251;QR=680;RO=19;RPL=7;RPP=18.2106;RPPR=44.2683;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:9,2:9:330:2:73:-3.61997,0,-26.7388 0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83664 0/1:13:8,5:8:278:5:178:-12.4553,0,-21.4437 dDocent_Contig_3696 113 . T A 615.955 . AB=0.328358;ABP=20.1552;AC=3;AF=0.5;AN=6;AO=22;CIGAR=2X1M;DP=67;DPB=67;DPRA=0;EPP=50.7827;EPPR=57.2971;GTI=0;LEN=1;MEANALT=2;MQM=45.6364;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=763;QR=854;RO=25;RPL=0;RPP=50.7827;RPPR=57.2971;RPR=22;RUN=1;SAF=0;SAP=50.7827;SAR=22;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:4,8,3:4:138:8,3:267,103:-18.7656,0,-8.80596,-11.6855,-2.93986,-22.005 0|1:19:6,5,8:6:202:5,8:162,277:-20.4834,-10.0947,-24.9548,0,-4.19019,-13.9769 0|1:33:15,7,11:15:514:7,11:239,383:-26.063,-12.0505,-51.6721,0,-23.2099,-38.4275 dDocent_Contig_3697 34 . G A 346.257 . AB=0.304348;ABP=18.305;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=33.4109;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=566;QR=1254;RO=32;RPL=0;RPP=33.4109;RPPR=72.4974;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:18,2:18:697:2:79:-1.47664,0,-57.0323 0/1:5:3,2:3:122:2:81:-6.18058,0,-9.86734 0/1:21:11,10:11:435:10:406:-30.5786,0,-33.1826 dDocent_Contig_3698 25 . A G 120.182 . AB=0.3125;ABP=7.89611;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=17;DPB=17;DPRA=8;EPP=13.8677;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=482;RO=12;RPL=0;RPP=13.8677;RPPR=29.068;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1,0:1:38:0:0:0,-0.30103,-3.79727 0/1:8:5,3:5:200:3:123:-9.05655,0,-15.9713 0/1:8:6,2:6:244:2:81:-5.27749,0,-19.9306 dDocent_Contig_3699 10 . C T 234.743 . AB=0.168675;ABP=82.1513;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X1M1D1M;DP=125;DPB=121;DPRA=0;EPP=37.7539;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=636;QR=4347;RO=109;RPL=0;RPP=37.7539;RPPR=239.701;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:42:40,2:40:1580:2:80:0,-5.05168,-134.856 0|1:43:37,6:37:1484:6:237:-8.75685,0,-120.866 0|1:40:32,8:32:1283:8:319:-17.0362,0,-103.699 dDocent_Contig_3701 12 . C T 241.993 . AB=0.222222;ABP=39.2015;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X2M1X2M1X1M1X3M1X;DP=54;DPB=54;DPRA=0;EPP=29.068;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=478;QR=1619;RO=42;RPL=0;RPP=29.068;RPPR=94.2121;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:22:17,5:17:654:5:197:-11.4828,0,-52.5696 0|1:12:10,2:10:374:2:81:-4.07337,0,-30.3975 0|1:20:15,5:15:591:5:200:-12.3595,0,-47.5112 dDocent_Contig_3702 20 . G A 48.1496 . AB=0.121951;ABP=53.9075;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=110;DPB=110;DPRA=1.18841;EPP=13.8677;EPPR=231.015;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=4193;RO=105;RPL=0;RPP=13.8677;RPPR=231.015;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:45:45,0:45:1809:0:0:0,-13.5463,-163.022 0/1:41:36,5:36:1421:5:200:-6.0368,0,-115.796 0/0:24:24,0:24:963:0:0:0,-7.22472,-86.9704 dDocent_Contig_3704 114 . T G 75.8232 . AB=0.294118;ABP=9.26925;AC=1;AF=0.25;AN=4;AO=5;CIGAR=1X1M1X;DP=30;DPB=30;DPRA=1.30769;EPP=13.8677;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.96;PAO=0;PQA=0;PQR=0;PRO=0;QA=150;QR=835;RO=25;RPL=0;RPP=13.8677;RPPR=57.2971;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:17:12,5:12:401:5:150:-8.67923,0,-31.295 0|0:13:13,0:13:434:0:0:0,-3.91339,-39.3817 .:.:.:.:.:.:.:. dDocent_Contig_3705 142 . C G 30.222 . AB=0.222222;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=28;DPB=28;DPRA=1.5;EPP=9.52472;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=848;RO=25;RPL=0;RPP=9.52472;RPPR=57.2971;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:231:2:70:-3.93813,0,-18.4043 0/0:12:11,1:11:382:1:35:0,-0.113731,-31.2156 0/0:7:7,0:7:235:0:0:0,-2.10721,-21.4778 dDocent_Contig_3706 13 . G T 215.474 . AB=0.222222;ABP=15.074;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X1M1X2M1X;DP=28;DPB=28;DPRA=0;EPP=11.6962;EPPR=37.7539;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=623;RO=16;RPL=0;RPP=11.6962;RPPR=37.7539;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:9:6,1,2:6:228:1,2:39,81:-4.88289,-3.48814,-21.8634,0,-15.479,-18.0843 1|0:9:2,3,4:2:76:3,4:119,154:-15.6117,-6.41268,-11.7409,-3.57969,0,-8.60185 0|0:10:8,0,2:8:319:0,2:0,82:-4.76938,-7.17762,-33.4398,0,-26.6694,-26.0673 dDocent_Contig_3708 202 . G A 101.207 . AB=0.4;ABP=3.87889;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=26;DPB=26;DPRA=1.25;EPP=11.6962;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=152;QR=812;RO=22;RPL=4;RPP=11.6962;RPPR=50.7827;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:6,4:6:220:4:152:-11.0387,0,-17.1452 0/0:1:1,0:1:37:0:0:0,-0.30103,-3.69783 0/0:15:15,0:15:555:0:0:0,-4.51545,-50.2905 dDocent_Contig_3709 22 . A T 614.485 . AB=0.0555556;ABP=64.7766;AC=0;AF=0;AN=6;AO=2;CIGAR=1M1X1M;DP=234;DPB=234;DPRA=0;EPP=7.35324;EPPR=380.846;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=0.994253;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=6945;RO=174;RPL=0;RPP=7.35324;RPPR=380.846;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=174;SRP=380.846;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:36:25,0,2,4,5:25:987:0,2,4,5:0,82,157,193:-8.31457,-15.8403,-97.0493,-9.06834,-90.2802,-89.6782,-2.93021,-84.1393,-77.3701,-82.9352,0,-81.2047,-74.4356,-68.295,-79.6996 0|0:68:50,0,0,5,13:50:1993:0,0,5,13:0,0,194,521:-27.8805,-42.932,-207.055,-42.932,-207.055,-207.055,-26.9968,-191.117,-191.117,-189.612,0,-164.132,-164.132,-148.194,-160.218 0|0:130:99,10,0,3,18:99:3965:10,0,3,18:393,0,119,714:-28.9699,-26.45,-350.084,-58.7719,-353.094,-385.417,-48.9761,-343.298,-375.621,-374.718,0,-294.324,-326.647,-316.851,-321.228 dDocent_Contig_3710 60 . G A 97.9031 . 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T C 603.312 . 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C A 147.541 . AB=0.352941;ABP=6.20364;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=31;DPB=31;DPRA=0.607143;EPP=16.0391;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=968;RO=25;RPL=0;RPP=16.0391;RPPR=57.2971;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:7,3:7:270:3:117:-7.89991,0,-21.6533 0/1:7:4,3:4:147:3:121:-9.17299,0,-11.4807 0/0:14:14,0:14:551:0:0:0,-4.21442,-49.9299 dDocent_Contig_3725 17 . C G 1408.17 . 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AB=0.27027;ABP=19.9713;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=58;DPB=58;DPRA=0.880952;EPP=24.725;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.979167;PAO=0;PQA=0;PQR=0;PRO=0;QA=350;QR=1837;RO=48;RPL=0;RPP=24.725;RPPR=107.241;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:20,5:20:756:5:190:-9.94155,0,-60.8393 0/0:21:21,0:21:809:0:0:0,-6.32163,-73.1311 0/1:12:7,5:7:272:5:160:-11.0997,0,-21.2328 dDocent_Contig_3729 10 . A G 3749.59 . AB=0.661202;ABP=44.3157;AC=3;AF=0.5;AN=6;AO=121;CIGAR=1X;DP=183;DPB=183;DPRA=0;EPP=232.163;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=58.9587;MQMR=59.4194;NS=3;NUMALT=1;ODDS=0;PAIRED=0.520661;PAIREDR=0.758065;PAO=0;PQA=0;PQR=0;PRO=0;QA=4821;QR=2385;RO=62;RPL=0;RPP=265.758;RPPR=137.642;RPR=121;RUN=1;SAF=117;SAP=232.163;SAR=4;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:60:23,37:23:872:37:1467:-113.588,0,-60.7184 0/1:49:13,36:13:481:36:1442:-115.089,0,-28.733 0/1:74:26,48:26:1032:48:1912:-149.999,0,-70.8963 dDocent_Contig_3730 9 . T C 3287.02 . AB=0.0506329;ABP=141.572;AC=3;AF=0.5;AN=6;AO=4;CIGAR=1X4M;DP=247;DPB=247;DPRA=0;EPP=11.6962;EPPR=118.098;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=0.886792;PAO=0;PQA=0;PQR=0;PRO=0;QA=152;QR=2068;RO=53;RPL=0;RPP=11.6962;RPPR=118.098;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:114:32,11,22,42,0:32:1241:11,22,42,0:423,853,1624,0:-115.593,-98.4329,-197.086,-58.1843,-133.36,-153.531,0,-75.183,-34.9345,-89.3299,-125.226,-200.397,-160.154,-101.973,-227.192 0|1:54:8,18,1,27,0:8:309:18,1,27,0:694,39,1017,0:-105.779,-57.0045,-76.9665,-104.981,-79.1788,-130.061,-25.78,0,-47.9609,-43.04,-108.188,-82.385,-130.362,-51.1678,-133.569 0|1:79:13,12,11,38,4:13:518:12,11,38,4:474,421,1477,152:-111.046,-75.9514,-115.001,-80.5201,-84.1746,-119.871,0,-3.65523,-8.22596,-31.222,-102.494,-106.148,-110.717,-30.1969,-143.951 dDocent_Contig_3732 16 . G A 59.3802 . 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AB=0.116279;ABP=58.0041;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=232;DPB=232;DPRA=0;EPP=24.725;EPPR=485.077;GTI=0;LEN=1;MEANALT=1;MQM=56.8;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.963964;PAO=0;PQA=0;PQR=0;PRO=0;QA=376;QR=8463;RO=222;RPL=0;RPP=24.725;RPPR=485.077;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=222;SRP=485.077;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:103:100,3:100:3778:3:113:0,-20.4798,-329.612 0/1:43:38,5:38:1455:5:189:-4.40544,0,-118.282 0/0:86:84,2:84:3230:2:74:0,-18.8801,-283.838 dDocent_Contig_3734 37 . G C 115.96 . AB=0.189189;ABP=34.0565;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=94;DPB=94;DPRA=1.29825;EPP=18.2106;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=259;QR=3460;RO=87;RPL=0;RPP=18.2106;RPPR=191.928;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:30,7:30:1203:7:259:-12.5169,0,-97.4069 0/0:22:22,0:22:868:0:0:0,-6.62266,-78.4329 0/0:35:35,0:35:1389:0:0:0,-10.536,-125.264 dDocent_Contig_3735 9 . G T 579.132 . AB=0;ABP=0;AC=0;AF=0;AN=6;AO=2;CIGAR=1X1M1X;DP=93;DPB=93;DPRA=0;EPP=3.0103;EPPR=99.8304;GTI=0;LEN=1;MEANALT=1;MQM=27.5;MQMR=58.8095;NS=3;NUMALT=3;ODDS=6.93889e-18;PAIRED=0;PAIREDR=0.84127;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=2403;RO=63;RPL=0;RPP=7.35324;RPPR=139.813;RPR=2;RUN=1;SAF=1;SAP=3.0103;SAR=1;SRF=58;SRP=99.8304;SRR=5;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:29:27,2,0,0:27:1036:2,0,0:79,0,0:0,-3.55649,-88.3095,-8.12781,-88.9116,-93.203,-8.12781,-88.9116,-93.203,-93.203 0|0:45:26,0,4,15:26:983:0,4,15:0,143,584:-39.9075,-47.7343,-128.251,-36.1406,-116.653,-115.449,0,-80.537,-68.9396,-76.0215 0|0:19:10,0,0,8:10:384:0,0,8:0,0,291:-20.3244,-23.3347,-54.8868,-23.3347,-54.8868,-54.8868,0,-31.7797,-31.7797,-29.3714 dDocent_Contig_3736 10 . T C 1461 . AB=0.275862;ABP=15.6647;AC=4;AF=0.666667;AN=6;AO=44;CIGAR=1X;DP=65;DPB=65;DPRA=0;EPP=98.5551;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1735;QR=824;RO=21;RPL=0;RPP=98.5551;RPPR=48.6112;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:36:0,36:0:0:36:1427:-128.682,-10.8371,0 0/1:15:10,5:10:390:5:188:-12.7634,0,-30.9415 0/1:14:11,3:11:434:3:120:-6.97289,0,-35.1993 dDocent_Contig_3737 51 . G T 82.8432 . AB=0.25;ABP=11.6962;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=71;DPB=71;DPRA=0.581818;EPP=11.6962;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.970149;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=2654;RO=67;RPL=4;RPP=11.6962;RPPR=148.499;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:29,0:29:1145:0:0:0,-8.72987,-103.332 0/0:26:26,0:26:1037:0:0:0,-7.82678,-93.625 0/1:16:12,4:12:472:4:155:-9.50617,0,-38.0101 dDocent_Contig_3738 9 . G A 960.199 . AB=0.0740741;ABP=45.5551;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=1X2M1X1M2X;DP=113;DPB=113;DPRA=0;EPP=7.35324;EPPR=83.3548;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=3;NUMALT=7;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=1458;RO=37;RPL=0;RPP=7.35324;RPPR=83.3548;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:27:9,1,2,0,7,0,6,2:9:355:1,2,0,7,0,6,2:38,69,0,283,0,228,81:-20.6332,-20.2264,-49.1366,-17.7441,-43.8377,-46.3516,-23.3425,-49.4376,-46.9536,-52.5537,0,-26.1003,-23.6173,-29.2165,-27.1093,-23.3425,-49.4376,-46.9536,-52.5537,-29.2165,-52.5537,-4.64937,-30.7436,-28.2608,-33.8595,-10.5217,-33.8595,-32.0533,-16.6612,-42.7573,-40.2735,-45.8734,-22.5352,-45.8734,-27.1791,-45.2714 0|1:30:9,10,0,0,5,0,0,4:9:350:10,0,0,5,0,0,4:394,0,0,201,0,0,162:-29.7021,0,-25.7469,-32.4113,-28.7572,-61.1713,-32.4113,-28.7572,-61.1713,-61.1713,-15.8458,-12.1908,-44.6057,-44.6057,-43.1005,-32.4113,-28.7572,-61.1713,-61.1713,-44.6057,-61.1713,-32.4113,-28.7572,-61.1713,-61.1713,-44.6057,-61.1713,-61.1713,-19.0515,-15.3967,-47.8116,-47.8116,-31.2454,-47.8116,-47.8116,-46.6075 0|1:56:19,17,0,3,0,3,2,12:19:753:17,0,3,0,3,2,12:670,0,120,0,113,79,480:-49.4013,0,-56.8639,-55.1209,-61.9814,-117.103,-45.2352,-52.0959,-107.217,-106.314,-55.1209,-61.9814,-117.103,-107.217,-117.103,-45.863,-52.7236,-107.844,-97.9587,-107.844,-106.941,-48.6203,-55.4809,-110.602,-100.716,-110.602,-101.344,-110,-15.5803,-22.4415,-77.5631,-67.6774,-77.5631,-68.3049,-71.0625,-73.9507 dDocent_Contig_3739 21 . G C 83.6092 . AB=0.266667;ABP=10.1038;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=27;DPB=27;DPRA=0.625;EPP=11.6962;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=925;RO=23;RPL=0;RPP=11.6962;RPPR=52.9542;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:5:4,1:4:162:1:40:-2.49053,0,-13.4618 0/1:10:7,3:7:277:3:120:-8.1776,0,-22.2878 0/0:12:12,0:12:486:0:0:0,-3.61236,-44.0902 dDocent_Contig_3740 22 . C T 41.3008 . AB=0.15;ABP=24.2907;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=93;DPB=93;DPRA=0.867647;EPP=11.6962;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.1573;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=3557;RO=89;RPL=0;RPP=11.6962;RPPR=196.271;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:34,0:34:1354:0:0:0,-10.235,-122.124 0/0:39:38,1:38:1531:1:41:0,-7.6456,-133.325 0/1:20:17,3:17:672:3:122:-5.35189,0,-54.7881 dDocent_Contig_3741 59 . G C 110.084 . AB=0.277778;ABP=10.7311;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=34;DPB=34;DPRA=2.25;EPP=13.8677;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.862069;PAO=0;PQA=0;PQR=0;PRO=0;QA=192;QR=1126;RO=29;RPL=5;RPP=13.8677;RPPR=65.983;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:381:0:0:0,-3.0103,-34.6414 0/1:18:13,5:13:515:5:192:-12.2302,0,-41.2762 0/0:6:6,0:6:230:0:0:0,-1.80618,-21.0593 dDocent_Contig_3742 29 . C G 43.3969 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=2X;DP=21;DPB=21;DPRA=0.210526;EPP=7.35324;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=22;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=756;RO=19;RPL=0;RPP=7.35324;RPPR=44.2683;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:8:8,0:8:317:0:0:0,-2.40824,-28.8969 1|1:2:0,2:0:0:2:78:-4.16211,-0.60206,0 0|0:11:11,0:11:439:0:0:0,-3.31133,-39.8635 dDocent_Contig_3744 20 . T G 189.874 . AB=0.857143;ABP=10.7656;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=28;DPB=28;DPRA=0.666667;EPP=16.0391;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=846;RO=22;RPL=0;RPP=16.0391;RPPR=50.7827;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:307:0:0:0,-2.40824,-27.9907 0/1:7:1,6:1:38:6:243:-20.141,0,-1.69006 0/0:13:13,0:13:501:0:0:0,-3.91339,-45.4354 dDocent_Contig_3745 20 . T A 57.535 . AB=0.125;ABP=22.5536;AC=0;AF=0;AN=4;AO=2;CIGAR=2X2M1X;DP=21;DPB=21;DPRA=3.2;EPP=7.35324;EPPR=37.7539;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=2;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=630;RO=16;RPL=0;RPP=7.35324;RPPR=37.7539;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:16:11,2,3:11:435:2,3:79,123:-6.84982,-3.66613,-38.852,0,-29.2987,-34.8965 0|0:5:5,0,0:5:195:0,0:0,0:0,-1.50515,-17.9226,-1.50515,-17.9226,-17.9226 .:.:.:.:.:.:.:. dDocent_Contig_3746 21 . C T 156.495 . AB=0.304348;ABP=10.6577;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=29;DPB=29;DPRA=1.91667;EPP=18.2106;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=53.5714;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.818182;PAO=0;PQA=0;PQR=0;PRO=0;QA=269;QR=768;RO=22;RPL=0;RPP=18.2106;RPPR=50.7827;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:10,3:10:341:3:115:-6.77889,0,-27.102 0/1:10:6,4:6:200:4:154:-11.1892,0,-15.316 0/0:6:6,0:6:227:0:0:0,-1.80618,-20.7933 dDocent_Contig_3747 47 . T G 179.254 . AB=0.545455;ABP=3.20771;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=35;DPB=35;DPRA=0.916667;EPP=16.0391;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=1150;RO=29;RPL=0;RPP=16.0391;RPPR=65.983;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:5,6:5:199:6:242:-18.8462,0,-14.9767 0/0:8:8,0:8:320:0:0:0,-2.40824,-29.1672 0/0:16:16,0:16:631:0:0:0,-4.81648,-57.1219 dDocent_Contig_3749 10 . T C 244.484 . AB=0.3125;ABP=12.7819;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=49;DPB=49;DPRA=0;EPP=26.8965;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=54.5789;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.815789;PAO=0;PQA=0;PQR=0;PRO=0;QA=436;QR=1454;RO=38;RPL=0;RPP=26.8965;RPPR=85.5263;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:17,8:17:630:8:315:-21.1882,0,-47.6787 0/0:17:16,1:16:623:1:40:0,-1.12183,-49.8161 0/1:7:5,2:5:201:2:81:-5.57852,0,-14.8612 dDocent_Contig_3750 44 . A G 1297 . 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AB=0.0624458;ABP=1920.39;AC=0;AF=0;AN=6;AO=72;CIGAR=1X1M1X2M1X;DP=1153;DPB=1153;DPRA=0;EPP=159.356;EPPR=263.587;GTI=0;LEN=1;MEANALT=17;MQM=59.2083;MQMR=58.4917;NS=3;NUMALT=6;ODDS=4.44089e-16;PAIRED=0.986111;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2751;QR=4610;RO=120;RPL=0;RPP=159.356;RPPR=263.587;RPR=72;RUN=1;SAF=72;SAP=159.356;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:291:23,15,16,93,36,57,16:23:882:15,16,93,36,57,16:579,609,3494,1359,2167,635:-384.038,-343.411,-411.287,-341.01,-365.85,-408.585,-105.094,-129.934,-127.533,-149.49,-280.211,-305.052,-302.651,-66.7356,-341.766,-213.475,-238.316,-235.915,0,-175.117,-268.709,-338.714,-363.555,-361.154,-125.237,-300.355,-233.62,-406.29 0|0:365:54,20,13,99,46,69,27:54:2062:20,13,99,46,69,27:757,481,3712,1740,2599,1062:-330.991,-285.601,-447.393,-307.898,-414.065,-471.796,-45.1034,-151.27,-173.567,-183.113,-204.744,-310.911,-333.207,-70.4129,-358.708,-134.331,-240.497,-262.794,0,-159.64,-281.371,-259.98,-366.146,-388.443,-125.648,-285.289,-214.876,-419.664 0|0:497:43,37,20,145,59,108,26:43:1666:37,20,145,59,108,26:1415,765,5500,2256,4126,1042:-644.107,-540.944,-661.844,-594.278,-610.209,-720.296,-206.463,-222.393,-275.727,-294.851,-472.275,-488.206,-541.54,-153.724,-586.553,-318.551,-334.482,-387.816,0,-265.813,-418.078,-571.243,-587.174,-640.508,-252.691,-518.505,-364.78,-695.454 dDocent_Contig_3769 173 . G C 170.92 . AB=0.304348;ABP=10.6577;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=38;DPB=38;DPRA=0;EPP=20.3821;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=324;QR=1148;RO=30;RPL=8;RPP=20.3821;RPPR=68.1545;RPR=0;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:10,2:10:350:2:79:-3.88488,0,-28.206 0/0:15:14,1:14:555:1:40:0,-0.519771,-46.2953 0/1:11:6,5:6:243:5:205:-15.5237,0,-18.9366 dDocent_Contig_3771 8 . T C 144.264 . AB=0.315789;ABP=8.61041;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=66;DPB=66;DPRA=0.808511;EPP=16.0391;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.9;PAO=0;PQA=0;PQR=0;PRO=0;QA=230;QR=2300;RO=60;RPL=0;RPP=16.0391;RPPR=133.299;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:13,6:13:499:6:230:-15.3472,0,-39.538 0/0:15:15,0:15:580:0:0:0,-4.51545,-52.5429 0/0:32:32,0:32:1221:0:0:0,-9.63296,-110.186 dDocent_Contig_3772 55 . T G 386.564 . AB=0.365854;ABP=9.41879;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=41;DPB=41;DPRA=0;EPP=35.5824;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=594;QR=984;RO=25;RPL=15;RPP=35.5824;RPPR=57.2971;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:6,7:6:242:7:280:-21.6584,0,-18.2441 0/1:9:6,2:6:235:2:82:-5.18829,0,-18.9951 0/1:19:13,6:13:507:6:232:-15.5265,0,-40.2502 dDocent_Contig_3773 18 . G A 179.476 . AB=0.11976;ABP=212.733;AC=1;AF=0.166667;AN=6;AO=52;CIGAR=1X;DP=594;DPB=594;DPRA=0;EPP=115.927;EPPR=581.535;GTI=0;LEN=1;MEANALT=1;MQM=59.8654;MQMR=43.1402;NS=3;NUMALT=1;ODDS=0;PAIRED=0.942308;PAIREDR=0.605166;PAO=0;PQA=0;PQR=0;PRO=0;QA=1968;QR=20803;RO=542;RPL=0;RPP=115.927;RPPR=1179.95;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=461;SRP=581.535;SRR=81;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:252:234,18:234:8953:18:647:0,-17.3194,-554.071 0/0:175:161,14:161:6141:14:553:0,-2.5754,-309.833 0/1:167:147,20:147:5709:20:768:-19.1694,0,-417.688 dDocent_Contig_3774 124 . A C 213.254 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=9;CIGAR=1X1M3X;DP=9;DPB=9;DPRA=0;EPP=22.5536;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=30;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=309;QR=0;RO=0;RPL=0;RPP=22.5536;RPPR=0;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:6:0,6:0:0:6:205:-18.2267,-1.80618,0 1|1:3:0,3:0:0:3:104:-2.79609,-0.90309,0 .:.:.:.:.:.:.:. dDocent_Contig_3775 1 . N G 82.9989 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=57;MQMR=0;NS=1;NUMALT=1;ODDS=5.29832;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=89;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:89:-8.29772,-0.90309,0 dDocent_Contig_3776 42 . C A 229.287 . AB=0.211538;ABP=40.5935;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=165;DPB=165;DPRA=0.920354;EPP=26.8965;EPPR=337.417;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=435;QR=6022;RO=154;RPL=0;RPP=26.8965;RPPR=337.417;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=154;SRP=337.417;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:41,11:41:1622:11:435:-23.8495,0,-130.562 0/0:56:56,0:56:2187:0:0:0,-16.8577,-197.01 0/0:57:57,0:57:2213:0:0:0,-17.1587,-199.339 dDocent_Contig_3777 61 . G A 40.7445 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=33;DPB=33;DPRA=0.538462;EPP=7.35324;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=1192;RO=31;RPL=2;RPP=7.35324;RPPR=70.3259;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:424:0:0:0,-3.31133,-38.5129 0/0:15:15,0:15:579:0:0:0,-4.51545,-52.4482 0/1:7:5,2:5:189:2:78:-5.29626,0,-15.2684 dDocent_Contig_3778 119 . A G 170.577 . AB=0.421053;ABP=4.03889;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=31;DPB=31;DPRA=0.791667;EPP=20.3821;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=54;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=276;QR=772;RO=23;RPL=0;RPP=20.3821;RPPR=52.9542;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:6,2:6:207:2:69:-4.14442,0,-16.5595 0/1:11:5,6:5:178:6:207:-15.2318,0,-13.0573 0/0:12:12,0:12:387:0:0:0,-3.61236,-35.1386 dDocent_Contig_3779 9 . G C 41.0807 . AB=0.166667;ABP=20.3821;AC=1;AF=0.25;AN=4;AO=3;CIGAR=1X;DP=36;DPB=36;DPRA=1;EPP=9.52472;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=56.6667;MQMR=48.0606;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.787879;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=1250;RO=33;RPL=0;RPP=9.52472;RPPR=74.6689;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:15,3:15:572:3:114:-5.20495,0,-41.115 0/0:18:18,0:18:678:0:0:0,-5.41854,-49.7495 ./.:.:.:.:.:.:.:. dDocent_Contig_3780 62 . T C 2954.74 . AB=0.714286;ABP=61.6401;AC=3;AF=0.5;AN=6;AO=105;CIGAR=1X;DP=147;DPB=147;DPRA=0;EPP=231.015;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.971429;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3806;QR=1542;RO=42;RPL=105;RPP=231.015;RPPR=94.2121;RPR=0;RUN=1;SAF=105;SAP=231.015;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:82:26,56:26:938:56:2018:-157.182,0,-60.0439 0/1:15:9,6:9:351:6:233:-16.8246,0,-27.4358 0/1:50:7,43:7:253:43:1555:-125.184,0,-8.06816 dDocent_Contig_3781 22 . C T 117.658 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=31;DPB=31;DPRA=0.952381;EPP=13.8677;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=174;QR=1027;RO=26;RPL=0;RPP=13.8677;RPPR=59.4686;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:321:0:0:0,-2.40824,-29.2583 0/1:10:5,5:5:192:5:174:-12.9877,0,-14.6377 0/0:13:13,0:13:514:0:0:0,-3.91339,-46.6086 dDocent_Contig_3782 8 . T A 1158.16 . AB=0.432203;ABP=7.72129;AC=3;AF=0.5;AN=6;AO=51;CIGAR=1X2M1X;DP=118;DPB=118;DPRA=0;EPP=113.755;EPPR=122.441;GTI=0;LEN=1;MEANALT=2;MQM=37.1569;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1935;QR=2135;RO=55;RPL=0;RPP=113.755;RPPR=122.441;RPR=51;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:40:15,16,9:15:581:16,9:607,346:-40.8501,0,-42.9149,-16.9474,-19.327,-61.9862 0|1:19:13,5,1:13:493:5,1:192,37:-8.30356,0,-38.9249,-9.17932,-37.4037,-49.3525 0|1:59:27,30,0:27:1061:30,0:1136,0:-70.3793,0,-78.3578,-78.5071,-87.3887,-165.812 dDocent_Contig_3783 22 . T C 7292.79 . AB=0.422535;ABP=40.0171;AC=2;AF=0.333333;AN=6;AO=300;CIGAR=2X;DP=710;DPB=710;DPRA=0;EPP=3.0103;EPPR=220.342;GTI=0;LEN=1;MEANALT=3.33333;MQM=44.0967;MQMR=59.3759;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.276596;PAO=0;PQA=0;PQR=0;PRO=0;QA=11489;QR=10985;RO=282;RPL=0;RPP=654.452;RPPR=615.366;RPR=300;RUN=1;SAF=150;SAP=3.0103;SAR=150;SRF=225;SRP=220.342;SRR=57;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:289:131,120,0,32:131:5166:120,0,32:4562,0,1244:-268.281,0,-386.692,-307.716,-422.815,-730.547,-206.268,-321.381,-629.109,-619.476 0|1:347:103,170,6,66:103:3951:170,6,66:6533,244,2593:-440.61,0,-273.054,-451.489,-304.102,-773.924,-259.2,-111.823,-563.321,-563.58 0|0:74:48,10,4,12:48:1868:10,4,12:394,158,475:-24.1044,-7.22353,-157.314,-25.5519,-147.324,-177.453,0,-121.773,-140.105,-149.493 dDocent_Contig_3784 7 . T G 211.037 . AB=0.270833;ABP=24.906;AC=3;AF=0.5;AN=6;AO=13;CIGAR=2X;DP=48;DPB=48;DPRA=0;EPP=31.2394;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=426;QR=1317;RO=35;RPL=0;RPP=31.2394;RPPR=79.0118;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:13:10,3:10:370:3:78:-3.3649,0,-29.7338 0|1:24:17,7:17:644:7:247:-15.3433,0,-51.0705 0|1:11:8,3:8:303:3:101:-6.11065,0,-24.3161 dDocent_Contig_3785 46 . G T 41.3872 . AB=0.113636;ABP=60.0608;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=79;DPB=79;DPRA=0.628571;EPP=13.8677;EPPR=4.88833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=2985;RO=74;RPL=0;RPP=13.8677;RPPR=4.88833;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:22,2:22:891:2:78:-0.178581,0,-73.2693 0/1:20:17,3:17:678:3:122:-5.35189,0,-55.3286 0/0:35:35,0:35:1416:0:0:0,-10.536,-127.687 dDocent_Contig_3786 22 . T A 939.104 . AB=0.0606061;ABP=58.3499;AC=0;AF=0;AN=6;AO=2;CIGAR=1X2M2X1M1X;DP=87;DPB=87;DPRA=0;EPP=7.35324;EPPR=113.755;GTI=0;LEN=1;MEANALT=2;MQM=16;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=1964;RO=51;RPL=0;RPP=7.35324;RPPR=113.755;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:35:32,0,3:32:1247:0,3:0,120:-0.63807,-10.271,-112.748,0,-102.875,-101.972 0|0:19:9,0,10:9:326:0,10:0,390:-29.7012,-32.4104,-59.0049,0,-26.9693,-23.959 0|0:33:10,2,21:10:391:2,21:76,842:-66.5036,-67.2616,-98.8031,0,-30.1043,-26.0173 dDocent_Contig_3787 7 . T A 221.139 . AB=0.37037;ABP=6.95112;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X1M1X2M1X2M9D2M1X2M1X;DP=27;DPB=22.6957;DPRA=0;EPP=24.725;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1.66667;MQM=40;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=391;QR=583;RO=15;RPL=0;RPP=24.725;RPPR=35.5824;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:11:6,4:6:229:4:158:-10.3607,0,-17.7564 0|1:11:6,4:6:236:4:155:-10.0474,0,-18.2293 0|1:5:3,2:3:118:2:78:-5.42248,0,-9.49774 dDocent_Contig_3788 12 . A G 205.357 . AB=0.25;ABP=13.8677;AC=2;AF=0.333334;AN=6;AO=5;CIGAR=1X14M;DP=28;DPB=28.2667;DPRA=0;EPP=13.8677;EPPR=37.7539;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=615;RO=16;RPL=0;RPP=13.8677;RPPR=37.7539;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:8:6,2,0,0:6:231:2,0,0:79,0,0:-5.08939,0,-18.7493,-6.89557,-19.3514,-25.8548,-6.89557,-19.3514,-25.8548,-25.8548 0|0:13:8,0,3,1:8:312:0,3,1:0,118,38:-6.68374,-9.09198,-34.7527,0,-25.6685,-24.7654,-5.9723,-31.6363,-22.5525,-31.3353 0|1:7:2,1,0,4:2:72:1,0,4:41,0,159:-12.4786,-9.69409,-15.2547,-13.0806,-15.5557,-18.9434,0,-2.44032,-5.84095,-4.63683 dDocent_Contig_3789 24 . T C 980.72 . AB=0.4375;ABP=5.72464;AC=3;AF=0.5;AN=6;AO=35;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=79.0118;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1387;QR=1781;RO=45;RPL=0;RPP=79.0118;RPPR=100.727;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:14,21:14:542:21:837:-65.1064,0,-38.5797 0/1:13:6,7:6:241:7:282:-21.8392,0,-18.1531 0/1:32:25,7:25:998:7:268:-14.843,0,-80.4862 dDocent_Contig_3790 15 . T G 768.3 . AB=0.171429;ABP=101.471;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X3M3X;DP=105;DPB=105;DPRA=0;EPP=42.0968;EPPR=89.8692;GTI=0;LEN=1;MEANALT=2.66667;MQM=41.1111;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.925;PAO=0;PQA=0;PQR=0;PRO=0;QA=684;QR=1589;RO=40;RPL=0;RPP=42.0968;RPPR=89.8692;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:33:15,9,9:15:590:9,9:348,354:-22.7261,-11.7202,-57.5583,0,-33.1064,-45.9274 0|1:21:10,5,5:10:393:5,5:202,175:-10.6696,-4.14013,-34.9891,0,-22.8624,-30.896 0|1:51:15,30,4:15:606:30,4:1189,155:-47.1509,0,-40.9566,-39.5214,-37.8629,-88.3316 dDocent_Contig_3791 9 . G T 478.981 . AB=0.211864;ABP=88.1026;AC=2;AF=0.333333;AN=6;AO=28;CIGAR=1X;DP=152;DPB=152;DPRA=0;EPP=63.8115;EPPR=272.273;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.862903;PAO=0;PQA=0;PQR=0;PRO=0;QA=1051;QR=4711;RO=124;RPL=0;RPP=63.8115;RPPR=272.273;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=124;SRP=272.273;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:63:48,15:48:1815:15:574:-33.0363,0,-144.639 0/0:34:31,3:31:1176:3:106:0,-0.346814,-96.2476 0/1:55:45,10:45:1720:10:371:-17.1779,0,-138.503 dDocent_Contig_3792 113 . G A 381.387 . AB=0.447368;ABP=3.9246;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=38;DPB=38;DPRA=0;EPP=39.9253;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.0952;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.857143;PAO=0;PQA=0;PQR=0;PRO=0;QA=581;QR=730;RO=21;RPL=0;RPP=39.9253;RPPR=48.6112;RPR=17;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:8,5:8:276:5:174:-12.0883,0,-21.155 0/1:15:8,7:8:279:7:238:-17.2359,0,-20.8259 0/1:10:5,5:5:175:5:169:-12.5312,0,-13.0834 dDocent_Contig_3793 10 . C A 82.5638 . AB=0.193548;ABP=28.2974;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=45;DPB=45;DPRA=1.10714;EPP=16.0391;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=1562;RO=39;RPL=0;RPP=16.0391;RPPR=87.6977;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:19,2:19:747:2:70:-0.325486,0,-61.2288 0/1:10:6,4:6:242:4:135:-9.46615,0,-19.147 0/0:14:14,0:14:573:0:0:0,-4.21442,-51.9113 dDocent_Contig_3794 12 . G A 165.613 . AB=0.151899;ABP=86.1585;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=86;DPB=86;DPRA=5.64286;EPP=21.1059;EPPR=108.649;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.833333;PAIREDR=0.810811;PAO=0;PQA=0;PQR=0;PRO=0;QA=466;QR=2861;RO=74;RPL=0;RPP=29.068;RPPR=163.699;RPR=12;RUN=1;SAF=11;SAP=21.1059;SAR=1;SRF=67;SRP=108.649;SRR=7;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:49,8:49:1880:8:320:-12.0086,0,-152.266 0/1:22:18,4:18:712:4:146:-6.8714,0,-57.786 0/0:7:7,0:7:269:0:0:0,-2.10721,-24.5717 dDocent_Contig_3795 7 . T C 1419.67 . AB=0.322314;ABP=69.3748;AC=3;AF=0.5;AN=6;AO=78;CIGAR=1X2M1X;DP=242;DPB=242;DPRA=0;EPP=147.33;EPPR=287.473;GTI=0;LEN=1;MEANALT=3.66667;MQM=41.1538;MQMR=43.855;NS=3;NUMALT=2;ODDS=2.77556e-17;PAIRED=0.576923;PAIREDR=0.450382;PAO=0;PQA=0;PQR=0;PRO=0;QA=2983;QR=4990;RO=131;RPL=0;RPP=172.385;RPPR=287.473;RPR=78;RUN=1;SAF=75;SAP=147.33;SAR=3;SRF=131;SRP=287.473;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:104:61,32,10:61:2307:32,10:1224,370:-54.2851,0,-126.251,-43.9941,-107.235,-176.924 0|1:61:38,15,6:38:1454:15,6:572,226:-22.0002,0,-79.6598,-16.677,-67.4191,-99.0933 0|1:77:32,31,11:32:1229:31,11:1187,430:-69.3984,0,-73.8868,-43.7058,-47.8947,-123.66 dDocent_Contig_3796 196 . C T 39.8015 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=34;DPB=34;DPRA=0.518519;EPP=7.35324;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=1152;RO=32;RPL=2;RPP=7.35324;RPPR=72.4974;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=72.4974;SRR=32;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:297:0:0:0,-2.40824,-27.0825 0/1:7:5,2:5:153:2:77:-5.20193,0,-11.9623 0/0:19:19,0:19:702:0:0:0,-5.71957,-63.5037 dDocent_Contig_3797 39 . G T 50.5271 . AB=0.333333;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=25;DPB=25;DPRA=0.631579;EPP=7.35324;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=926;RO=23;RPL=0;RPP=7.35324;RPPR=52.9542;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:4,2:4:158:2:82:-5.9735,0,-12.7932 0/0:8:8,0:8:321:0:0:0,-2.40824,-29.2583 0/0:11:11,0:11:447:0:0:0,-3.31133,-40.5861 dDocent_Contig_3798 7 . T A 1504.23 . AB=0.444444;ABP=6.38815;AC=3;AF=0.5;AN=6;AO=56;CIGAR=1X;DP=126;DPB=126;DPRA=0;EPP=124.613;EPPR=152.842;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2121;QR=2596;RO=69;RPL=0;RPP=124.613;RPPR=152.842;RPR=56;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:66:44,21:44:1668:21:785:-51.2935,0,-130.713 0/1:17:6,11:6:228:11:423:-33.3058,0,-15.7671 0/1:43:19,24:19:700:24:913:-69.5405,0,-50.3783 dDocent_Contig_3800 33 . A C 1013.92 . AB=0.278912;ABP=65.4217;AC=3;AF=0.5;AN=6;AO=41;CIGAR=1X;DP=147;DPB=147;DPRA=0;EPP=92.0407;EPPR=233.186;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1648;QR=4206;RO=106;RPL=0;RPP=92.0407;RPPR=233.186;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:84:56,28:56:2235:28:1120:-75.7988,0,-176.031 0/1:52:42,10:42:1648:10:405:-21.156,0,-132.889 0/1:11:8,3:8:323:3:123:-8.15346,0,-26.1276 dDocent_Contig_3801 31 . A T 1929.59 . AB=0.530303;ABP=3.53672;AC=4;AF=0.666667;AN=6;AO=60;CIGAR=1X;DP=91;DPB=91;DPRA=0;EPP=133.299;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2380;QR=1223;RO=31;RPL=0;RPP=133.299;RPPR=70.3259;RPR=60;RUN=1;SAF=60;SAP=133.299;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:25:0,25:0:0:25:995:-89.851,-7.52575,0 0/1:26:16,10:16:625:10:383:-26.9917,0,-48.7578 0/1:40:15,25:15:598:25:1002:-78.4348,0,-42.1185 dDocent_Contig_3802 7 . T C 1317 . AB=0.346939;ABP=22.9524;AC=2;AF=0.333333;AN=6;AO=34;CIGAR=1X1M3X;DP=98;DPB=99;DPRA=0;EPP=76.8404;EPPR=61.6401;GTI=0;LEN=1;MEANALT=2;MQM=56.2353;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=0.970588;PAIREDR=0.888889;PAO=2.5;PQA=0;PQR=0;PRO=0;QA=1291;QR=1022;RO=27;RPL=0;RPP=76.8404;RPPR=61.6401;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:27:10,7,10:10:375:7,10:267,398:-29.2951,-10.4053,-39.0045,0,-8.80409,-27.7011 1|0:34:6,13,15:6:226:13,15:485,600:-64.2439,-28.3893,-42.9942,-19.1321,0,-33.1428 1|0:37:11,14,12:11:421:14,12:539,475:-41.8775,-2.97267,-33.3077,-7.6602,0,-38.6026 dDocent_Contig_3803 109 . G C 45.0002 . AB=0.25;ABP=11.6962;AC=3;AF=0.5;AN=6;AO=4;CIGAR=1X;DP=16;DPB=16;DPRA=0;EPP=11.6962;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.916667;PAO=0;PQA=0;PQR=0;PRO=0;QA=129;QR=416;RO=12;RPL=0;RPP=11.6962;RPPR=29.068;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=29.068;SRR=12;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:6,2:6:206:2:66:-3.86012,0,-16.4685 0/1:6:5,1:5:175:1:28:-0.993547,0,-14.2875 0/1:2:1,1:1:35:1:35:-2.89657,0,-2.89657 dDocent_Contig_3804 12 . T A 39.0246 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=35;DPB=35;DPRA=0.5;EPP=7.35324;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=73;QR=1328;RO=33;RPL=0;RPP=7.35324;RPPR=74.6689;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:5,2:5:202:2:73:-4.82286,0,-16.4547 0/0:4:4,0:4:164:0:0:0,-1.20412,-15.1499 0/0:24:24,0:24:962:0:0:0,-7.22472,-86.8783 dDocent_Contig_3805 18 . G A 164.794 . AB=0.428571;ABP=3.63072;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=25;DPB=25;DPRA=2.54545;EPP=16.0391;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=236;QR=764;RO=19;RPL=0;RPP=16.0391;RPPR=44.2683;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:8,6:8:325:6:236:-17.3973,0,-25.4052 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 0/0:10:10,0:10:399:0:0:0,-3.0103,-36.2662 dDocent_Contig_3806 61 . G C 707.92 . AB=0.27619;ABP=48.6939;AC=2;AF=0.333333;AN=6;AO=34;CIGAR=1X;DP=173;DPB=173;DPRA=0;EPP=76.8404;EPPR=304.845;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1348;QR=5511;RO=139;RPL=34;RPP=76.8404;RPPR=304.845;RPR=0;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=139;SRP=304.845;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:68:63,5:63:2505:5:192:0,-2.82184,-207.952 0/1:44:29,15:29:1140:15:588:-40.011,0,-89.6394 0/1:61:47,14:47:1866:14:568:-33.0997,0,-149.786 dDocent_Contig_3808 14 . G T 123.991 . AB=0.175;ABP=39.7082;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=156;DPB=156;DPRA=0.689655;EPP=18.2106;EPPR=326.56;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=281;QR=5921;RO=149;RPL=0;RPP=18.2106;RPPR=326.56;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=149;SRP=326.56;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:58:58,0:58:2291:0:0:0,-17.4597,-206.357 0/1:40:33,7:33:1309:7:281:-13.621,0,-106.035 0/0:58:58,0:58:2321:0:0:0,-17.4597,-209.045 dDocent_Contig_3809 26 . A C 161.377 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=31;DPB=31;DPRA=1.26316;EPP=16.0391;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=229;QR=1013;RO=25;RPL=0;RPP=16.0391;RPPR=57.2971;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:408:0:0:0,-3.0103,-37.0806 0/0:9:9,0:9:362:0:0:0,-2.70927,-32.9437 0/1:12:6,6:6:243:6:229:-17.3595,0,-18.6358 dDocent_Contig_3810 16 . A C 63.2408 . 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AB=0.222222;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=46;DPB=46;DPRA=0.486486;EPP=7.35324;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=0.840909;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=1615;RO=44;RPL=1;RPP=3.0103;RPPR=4.78696;RPR=1;RUN=1;SAF=1;SAP=3.0103;SAR=1;SRF=25;SRP=4.78696;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:927:0:0:0,-7.52575,-83.7387 0/0:12:12,0:12:439:0:0:0,-3.61236,-39.8479 0/1:9:7,2:7:249:2:76:-4.50427,0,-20.0452 dDocent_Contig_3812 7 . T C 12370.6 . 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G A 1182.62 . AB=0.226415;ABP=175.294;AC=3;AF=0.5;AN=6;AO=60;CIGAR=1X;DP=265;DPB=265;DPRA=0;EPP=79.5909;EPPR=339.328;GTI=0;LEN=1;MEANALT=1.66667;MQM=51.25;MQMR=57.66;NS=3;NUMALT=1;ODDS=0;PAIRED=0.133333;PAIREDR=0.38;PAO=0;PQA=0;PQR=0;PRO=0;QA=2280;QR=7643;RO=200;RPL=0;RPP=133.299;RPPR=437.305;RPR=60;RUN=1;SAF=53;SAP=79.5909;SAR=7;SRF=188;SRP=339.328;SRR=12;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:102:73,24:73:2793:24:913:-52.2741,0,-221.314 0/1:89:71,18:71:2702:18:680:-33.3572,0,-214.712 0/1:74:56,18:56:2148:18:687:-36.3475,0,-170.878 dDocent_Contig_3819 10 . A T 109.797 . 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AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=1X;DP=30;DPB=30;DPRA=0.142857;EPP=7.35324;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.77626e-21;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=1127;RO=28;RPL=0;RPP=7.35324;RPPR=63.8115;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:521:0:0:0,-3.91339,-47.2371 1/1:2:0,2:0:0:2:75:-7.11959,-0.60206,0 0/0:15:15,0:15:606:0:0:0,-4.51545,-54.8788 dDocent_Contig_3823 152 . A G 1579.31 . AB=0.641975;ABP=17.1919;AC=3;AF=0.5;AN=6;AO=52;CIGAR=1X;DP=81;DPB=81;DPRA=0;EPP=57.1301;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2056;QR=1126;RO=29;RPL=8;RPP=57.1301;RPPR=65.983;RPR=44;RUN=1;SAF=0;SAP=115.927;SAR=52;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:11,33:11:408:33:1292:-103.3,0,-23.8109 0/1:27:15,12:15:596:12:478:-35.243,0,-45.8478 0/1:10:3,7:3:122:7:286:-23.1045,0,-8.36219 dDocent_Contig_3824 13 . A T 261.208 . AB=0.310345;ABP=12.0706;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X1M2X;DP=39;DPB=39;DPRA=1.45;EPP=22.5536;EPPR=57.2971;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=355;QR=978;RO=25;RPL=0;RPP=22.5536;RPPR=57.2971;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:10:10,0,0:10:388:0,0:0,0:0,-3.0103,-35.2772,-3.0103,-35.2772,-35.2772 0|0:16:11,2,3:11:433:2,3:78,123:-6.8528,-3.76046,-38.7664,0,-29.2128,-34.7207 0|1:13:4,7,2:4:157:7,2:277,81:-21.5867,0,-10.7966,-16.1096,-6.2205,-28.4184 dDocent_Contig_3825 18 . T C 677.06 . AB=0.264151;ABP=28.6173;AC=5;AF=0.833333;AN=6;AO=14;CIGAR=1X3M;DP=53;DPB=53;DPRA=0;EPP=12.937;EPPR=33.4109;GTI=0;LEN=1;MEANALT=3.33333;MQM=59.2857;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.785714;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=545;QR=527;RO=14;RPL=0;RPP=33.4109;RPPR=33.4109;RPR=14;RUN=1;SAF=11;SAP=12.937;SAR=3;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:14:2,7,3,2:2:68:7,3,2:280,110,78:-25.9617,-3.48429,-6.88137,-17.5837,0,-22.1846,-20.152,-2.56713,-16.6754,-25.0562 1|1:27:7,11,8,1:7:270:11,8,1:431,319,39:-37.4406,-4.10974,-22.9655,-13.2743,0,-33.0362,-36.3421,-23.0712,-32.2386,-58.211 0|1:12:5,2,3,1:5:189:2,3,1:80,116,39:-8.01975,-2.92925,-17.815,0,-8.88955,-14.5818,-6.3183,-15.2099,-12.2779,-21.5029 dDocent_Contig_3826 12 . T C 146.272 . AB=0.205882;ABP=28.557;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=51;DPB=51;DPRA=1;EPP=18.2106;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=1735;RO=44;RPL=0;RPP=18.2106;RPPR=98.5551;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:16,6:16:629:6:242:-15.5343,0,-50.3199 0/1:12:11,1:11:427:1:40:-0.383319,0,-35.1689 0/0:17:17,0:17:679:0:0:0,-5.11751,-61.4397 dDocent_Contig_3827 29 . A C 872.993 . AB=0.392857;ABP=8.59409;AC=4;AF=0.666667;AN=6;AO=29;CIGAR=1X;DP=63;DPB=63;DPRA=0;EPP=65.983;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1171;QR=1331;RO=34;RPL=0;RPP=65.983;RPPR=76.8404;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:22,11:22:850:11:438:-29.8408,0,-66.8709 0/1:23:12,11:12:481:11:447:-33.6624,0,-36.7179 1/1:7:0,7:0:0:7:286:-26.1148,-2.10721,0 dDocent_Contig_3828 19 . T C 509.844 . AB=0.395833;ABP=7.5342;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=48;DPB=48;DPRA=0;EPP=44.2683;EPPR=19.8579;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=49.3448;NS=3;NUMALT=1;ODDS=0;PAIRED=0.947368;PAIREDR=0.517241;PAO=0;PQA=0;PQR=0;PRO=0;QA=756;QR=1078;RO=29;RPL=0;RPP=44.2683;RPPR=65.983;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=22;SRP=19.8579;SRR=7;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:7,5:7:246:5:190:-13.8527,0,-17.5808 0/1:15:8,7:8:324:7:280:-21.0552,0,-24.7013 0/1:21:14,7:14:508:7:286:-19.7932,0,-37.938 dDocent_Contig_3829 37 . C T 275.181 . 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AB=0.238095;ABP=28.0339;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=29.068;EPPR=110.022;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.416667;PAIREDR=0.929825;PAO=0;PQA=0;PQR=0;PRO=0;QA=479;QR=2236;RO=57;RPL=12;RPP=29.068;RPPR=126.784;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=55;SRP=110.022;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:19,7:19:735:7:280:-17.745,0,-58.6493 0/1:16:13,3:13:519:3:118:-6.18603,0,-42.2409 0/0:27:25,2:25:982:2:81:0,-0.442076,-80.9904 dDocent_Contig_3832 99 . C T 46.5967 . 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AB=0.6;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=16;DPB=16;DPRA=0.909091;EPP=9.52472;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=101;QR=451;RO=13;RPL=0;RPP=9.52472;RPPR=31.2394;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=31.2394;SRR=13;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:206:0:0:0,-1.80618,-18.8767 0/1:5:2,3:2:70:3:101:-7.91858,0,-5.14225 0/0:5:5,0:5:175:0:0:0,-1.50515,-16.0937 dDocent_Contig_3841 10 . T A 746.113 . 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C T 47.0762 . AB=0.2;ABP=14.7363;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=48;DPB=48;DPRA=0.909091;EPP=9.52472;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=112;QR=1801;RO=45;RPL=0;RPP=9.52472;RPPR=100.727;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:671:0:0:0,-5.11751,-60.7236 0/0:16:16,0:16:642:0:0:0,-4.81648,-58.1145 0/1:15:12,3:12:488:3:112:-5.92946,0,-39.756 dDocent_Contig_3847 72 . A G 234.057 . 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AB=0.0705882;ABP=139.149;AC=0;AF=0;AN=6;AO=6;CIGAR=1X1M1X1M3I4M1X4M;DP=115;DPB=147.231;DPRA=0;EPP=16.0391;EPPR=46.4397;GTI=0;LEN=1;MEANALT=8.5;MQM=60;MQMR=60;NS=3;NUMALT=9;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=2.5;PQA=97.1667;PQR=97.1667;PRO=2.5;QA=236;QR=773;RO=20;RPL=0;RPP=16.0391;RPPR=46.4397;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:38:5,1,9,0,0,4,1,16,2,0:5:193:1,9,0,0,4,1,16,2,0:40,303,0,0,159,40,516,80,0:-44.5006,-42.71,-58.2591,-23.9093,-36.46,-37.0457,-46.0057,-58.5601,-39.755,-61.8558,-46.0057,-58.5601,-39.755,-61.8558,-61.8558,-32.9121,-45.4668,-26.6647,-48.7626,-48.7626,-47.5585,-42.71,-55.2645,-36.46,-58.5601,-58.5601,-45.4668,-58.2591,-6.20191,-18.7443,0,-22.0379,-22.0379,-8.95416,-18.7443,-17.2215,-39.4142,-51.9688,-33.165,-55.2645,-55.2645,-42.171,-51.9688,-15.4508,-54.6624,-46.0057,-58.5601,-39.755,-61.8558,-61.8558,-48.7626,-58.5601,-22.0379,-55.2645,-61.8558 0|0:47:4,5,7,3,4,1,4,12,3,0:4:158:5,7,3,4,1,4,12,3,0:196,223,106,156,40,143,418,116,0:-35.2332,-20.3176,-31.8156,-20.132,-17.0159,-31.0261,-28.3537,-25.2372,-25.0513,-40.4532,-23.6132,-20.4965,-20.311,-28.5326,-35.4121,-33.1418,-30.0252,-29.8382,-38.0609,-33.3207,-45.8437,-25.5904,-22.4739,-22.2886,-30.5097,-25.7693,-35.2975,-37.3888,-3.29508,-0.179004,0,-8.21521,-3.47413,-13.0013,-5.45278,-12.6841,-26.909,-23.7924,-23.6063,-31.8283,-27.0879,-36.6165,-29.065,-6.76954,-39.0089,-36.4373,-33.3207,-33.1333,-41.3563,-36.6162,-46.1448,-38.5929,-16.2965,-39.912,-49.4402 0|0:30:11,0,0,0,0,0,9,4,0,4:11:422:0,0,0,0,0,9,4,0,4:0,0,0,0,0,345,119,0,145:-23.3734,-26.6847,-61.3208,-26.6847,-61.3208,-61.3208,-26.6847,-61.3208,-61.3208,-61.3208,-26.6847,-61.3208,-61.3208,-61.3208,-61.3208,-26.6847,-61.3208,-61.3208,-61.3208,-61.3208,-61.3208,0,-34.6267,-34.6267,-34.6267,-34.6267,-34.6267,-31.9174,-18.1279,-52.7515,-52.7515,-52.7515,-52.7515,-52.7515,-26.0685,-51.5474,-26.6847,-61.3208,-61.3208,-61.3208,-61.3208,-61.3208,-34.6267,-52.7515,-61.3208,-14.8539,-49.4877,-49.4877,-49.4877,-49.4877,-49.4877,-22.7973,-40.9221,-49.4877,-48.2835 dDocent_Contig_3849 23 . T G 57.473 . AB=0.166667;ABP=26.1727;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=40;DPB=40;DPRA=0.75;EPP=11.6962;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=1411;RO=35;RPL=0;RPP=11.6962;RPPR=79.0118;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:14,3:14:562:3:122:-5.85377,0,-45.4057 0/1:6:5,1:5:203:1:40:-2.1895,0,-16.8469 0/0:16:16,0:16:646:0:0:0,-4.81648,-58.4741 dDocent_Contig_3850 98 . N T 100.153 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1M4I3X4I6X;DP=3;DPB=5.4;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=41;MQMR=0;NS=1;NUMALT=1;ODDS=5.29832;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=113;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:3:0,3:0:0:3:113:-10.0131,-0.90309,0 dDocent_Contig_3852 38 . C T 184.807 . AB=0.875;ABP=12.7819;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=31;DPB=31;DPRA=0.695652;EPP=18.2106;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=0;PAIREDR=0.958333;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=964;RO=24;RPL=0;RPP=18.2106;RPPR=55.1256;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:563:0:0:0,-4.21442,-51.0125 0/0:9:9,0:9:361:0:0:0,-2.70927,-32.853 0/1:8:1,7:1:40:7:241:-19.6178,0,-1.58744 dDocent_Contig_3853 18 . G T 122.17 . AB=0;ABP=0;AC=0;AF=0;AN=6;AO=4;CIGAR=1X1M1X;DP=209;DPB=209;DPRA=0.72973;EPP=11.6962;EPPR=396.047;GTI=0;LEN=1;MEANALT=2;MQM=43.75;MQMR=53.9503;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.98895;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=6897;RO=181;RPL=0;RPP=11.6962;RPPR=396.047;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=181;SRP=396.047;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:81:67,0,10:67:2580:0,10:0,404:-13.1377,-33.3068,-235.947,0,-202.64,-199.63 0|0:54:47,4,3:47:1772:4,3:156,122:0,-1.78592,-132.809,-4.0728,-123.946,-135.424 0|0:74:67,0,5:67:2545:0,5:0,194:0,-20.169,-223.254,-4.22528,-207.313,-205.808 dDocent_Contig_3854 7 . T C 1368.84 . AB=0.172414;ABP=30.0414;AC=0;AF=0;AN=6;AO=5;CIGAR=1X2M1X;DP=71;DPB=71;DPRA=0;EPP=13.8677;EPPR=50.7827;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=192;QR=848;RO=22;RPL=0;RPP=13.8677;RPPR=50.7827;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:22:9,0,13:9:344:0,13:0,527:-41.1541,-43.8634,-72.0811,0,-28.609,-24.6956 0|0:29:9,5,15:9:348:5,15:192,610:-47.6236,-34.5773,-61.6494,0,-12.8262,-24.0709 0|0:20:4,0,16:4:156:0,16:0,639:-51.8232,-53.0274,-65.849,0,-13.2132,-8.39669 dDocent_Contig_3855 34 . G A 317.656 . AB=0.235294;ABP=13.3567;AC=2;AF=0.333334;AN=6;AO=4;CIGAR=1X2M;DP=74;DPB=74;DPRA=0.596491;EPP=11.6962;EPPR=128.956;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=2281;RO=58;RPL=0;RPP=11.6962;RPPR=128.956;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:21:21,0,0,0:21:826:0,0,0:0,0,0:0,-6.32163,-74.6561,-6.32163,-74.6561,-74.6561,-6.32163,-74.6561,-74.6561,-74.6561 1|1:17:2,8,3,4:2:73:8,3,4:318,119,162:-32.9875,-7.41119,-10.9593,-23.7945,-3.57025,-28.8509,-20.2291,0,-16.3917,-24.9845 0|0:36:35,0,0,0:35:1382:0,0,0:0,0,0:0,-10.536,-124.459,-10.536,-124.459,-124.459,-10.536,-124.459,-124.459,-124.459 dDocent_Contig_3856 31 . T C 446.583 . AB=0.555556;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=17;CIGAR=1X;DP=57;DPB=57;DPRA=0;EPP=39.9253;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=673;QR=1556;RO=40;RPL=0;RPP=39.9253;RPPR=89.8692;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:12,15:12:483:15:593:-45.5748,0,-35.6929 0/0:14:13,1:13:486:1:40:0,-0.218741,-40.0734 0/0:16:15,1:15:587:1:40:0,-0.820801,-49.1664 dDocent_Contig_3857 110 . T C 360.634 . AB=0.555556;ABP=3.73412;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=43;DPB=43;DPRA=0.84375;EPP=35.5824;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.928571;PAO=0;PQA=0;PQR=0;PRO=0;QA=496;QR=910;RO=28;RPL=0;RPP=35.5824;RPPR=63.8115;RPR=15;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:512:0:0:0,-4.81648,-46.3844 0/1:16:11,5:11:363:5:169:-10.7262,0,-28.1732 0/1:11:1,10:1:35:10:327:-26.4365,0,-0.187299 dDocent_Contig_3858 132 . G C 52.6301 . AB=0.272727;ABP=7.94546;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=29;DPB=29;DPRA=1.22222;EPP=9.52472;EPPR=36.4176;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=54.2308;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=0.884615;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=914;RO=26;RPL=0;RPP=9.52472;RPPR=59.4686;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=3;SRP=36.4176;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:303:0:0:0,-2.70927,-27.5979 0/0:9:9,0:9:315:0:0:0,-2.70927,-28.6888 0/1:11:8,3:8:296:3:105:-6.48483,0,-15.3877 dDocent_Contig_3859 24 . T G 162.398 . AB=0.291667;ABP=12.0581;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=33;DPB=33;DPRA=1.33333;EPP=18.2106;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.923077;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=933;RO=26;RPL=0;RPP=18.2106;RPPR=59.4686;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:12,5:12:418:5:200:-13.2624,0,-32.823 0/0:9:9,0:9:335:0:0:0,-2.70927,-30.4996 0/1:7:5,2:5:180:2:78:-5.29609,0,-14.4446 dDocent_Contig_3860 19 . G A 1839.63 . AB=0.747573;ABP=57.8452;AC=3;AF=0.5;AN=6;AO=77;CIGAR=1X;DP=103;DPB=103;DPRA=0;EPP=170.214;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=40.8052;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.974026;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2819;QR=1019;RO=26;RPL=0;RPP=170.214;RPPR=59.4686;RPR=77;RUN=1;SAF=77;SAP=170.214;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:12,30:12:482:30:1100:-67.6082,0,-31.0887 0/1:32:11,21:11:435:21:765:-57.9805,0,-29.871 0/1:29:3,26:3:102:26:954:-61.4405,0,-0.780976 dDocent_Contig_3862 142 . A C 117.346 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=25;DPB=25;DPRA=0.380952;EPP=11.6962;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=125;QR=754;RO=21;RPL=0;RPP=11.6962;RPPR=48.6112;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:328:0:0:0,-2.70927,-29.8685 1/1:4:0,4:0:0:4:125:-11.5582,-1.20412,0 0/0:12:12,0:12:426:0:0:0,-3.61236,-38.6737 dDocent_Contig_3863 9 . C T 32.4812 . AB=0.0737705;ABP=195.524;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X2M;DP=199;DPB=199;DPRA=0;EPP=33.4109;EPPR=391.704;GTI=0;LEN=1;MEANALT=1.66667;MQM=46;MQMR=51.6704;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.47486;PAO=0;PQA=0;PQR=0;PRO=0;QA=542;QR=6945;RO=179;RPL=0;RPP=33.4109;RPPR=391.704;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=179;SRP=391.704;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:77:72,0,5,0:72:2780:0,5,0:0,195,0:0,-21.6742,-243.116,-5.60271,-227.426,-225.921,-21.6742,-243.116,-227.426,-243.116 0|1:88:80,0,8,0:80:3111:0,8,0:0,308,0:-1.09035,-25.1728,-258.287,0,-233.49,-231.082,-25.1728,-258.287,-233.49,-258.287 0|0:34:27,2,1,4:27:1054:2,1,4:79,39,162:-4.4037,-6.02688,-88.7938,-9.3942,-86.2578,-92.4588,0,-76.8587,-80.2228,-82.1567 dDocent_Contig_3864 1 . N G 76.9006 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_3865 109 . A T 33.6033 . AB=0.214286;ABP=12.937;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=21;DPB=21;DPRA=1;EPP=9.52472;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=45;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=103;QR=581;RO=18;RPL=0;RPP=9.52472;RPPR=42.0968;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:220:0:0:0,-2.10721,-20.1089 0/1:5:4,1:4:116:1:35:-1.95347,0,-9.22223 0/1:9:7,2:7:245:2:68:-3.68619,0,-19.682 dDocent_Contig_3868 116 . G T 84.4445 . AB=0.363636;ABP=4.78696;AC=1;AF=0.25;AN=4;AO=4;CIGAR=1X;DP=24;DPB=24;DPRA=0.846154;EPP=11.6962;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=139;QR=670;RO=20;RPL=0;RPP=11.6962;RPPR=46.4397;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:7,4:7:216:4:139:-9.54136,0,-16.43 ./.:.:.:.:.:.:.:. 0/0:13:13,0:13:454:0:0:0,-3.91339,-41.1933 dDocent_Contig_3870 9 . C T 268.255 . AB=0.163793;ABP=116.9;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=116;DPB=116;DPRA=0;EPP=44.2683;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=59.3158;MQMR=59.1959;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.391753;PAO=0;PQA=0;PQR=0;PRO=0;QA=705;QR=3736;RO=97;RPL=0;RPP=44.2683;RPPR=213.643;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:34,7:34:1300:7:265:-11.8683,0,-104.382 0/1:23:21,2:21:811:2:78:-0.479783,0,-65.2682 0/1:52:42,10:42:1625:10:362:-17.2589,0,-130.86 dDocent_Contig_3871 19 . A C 395.34 . AB=0.223529;ABP=59.443;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X2M;DP=85;DPB=85;DPRA=0;EPP=44.2683;EPPR=139.813;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=746;QR=2441;RO=63;RPL=0;RPP=44.2683;RPPR=139.813;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:27:23,0,4:23:883:0,4:0,156:-6.28631,-13.21,-85.6848,0,-72.8635,-71.6594 0|1:19:17,0,2:17:660:0,2:0,77:-1.58957,-6.70708,-60.9394,0,-54.6174,-54.0153 0|1:39:23,3,13:23:898:3,13:115,513:-35.2905,-32.7783,-105.695,0,-64.3911,-69.9148 dDocent_Contig_3872 45 . T C 160.849 . AB=0.214286;ABP=32.7905;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=42;DPB=42;DPRA=0;EPP=9.04217;EPPR=32.0291;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.777778;PAIREDR=0.757576;PAO=0;PQA=0;PQR=0;PRO=0;QA=348;QR=1313;RO=33;RPL=2;RPP=9.04217;RPPR=32.0291;RPR=7;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:18,3:18:716:3:111:-4.02791,0,-58.4453 0/1:17:12,5:12:486:5:199:-13.1711,0,-38.9741 0/1:4:3,1:3:111:1:38:-2.59315,0,-9.14637 dDocent_Contig_3873 41 . G A 33.8433 . AB=0.113636;ABP=60.0608;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=94;DPB=94;DPRA=0.44;EPP=13.8677;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.988764;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=3566;RO=89;RPL=0;RPP=13.8677;RPPR=196.271;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:50:50,0:50:2015:0:0:0,-15.0515,-181.539 0/1:22:19,3:19:755:3:120:-4.56465,0,-61.651 0/1:22:20,2:20:796:2:79:-0.874584,0,-65.3335 dDocent_Contig_3874 119 . G C 61.6626 . AB=0.375;ABP=4.09604;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=26;DPB=26;DPRA=0.888889;EPP=9.52472;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=755;RO=23;RPL=0;RPP=9.52472;RPPR=52.9542;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:449:0:0:0,-3.91339,-40.7406 0/0:5:5,0:5:161:0:0:0,-1.50515,-14.8083 0/1:8:5,3:5:145:3:105:-7.38792,0,-10.9286 dDocent_Contig_3875 3 . A C 206.957 . AB=0.6;ABP=3.87889;AC=6;AF=1;AN=6;AO=7;CIGAR=5I1X1M1X2M1X;DP=11;DPB=20.1667;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=30.8571;MQMR=0;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:6:0,1,4:0:0:1,4:35,140:-11.0443,-9.48553,-9.1845,-1.52556,0,-0.321442 1|1:4:0,2,2:0:0:2,2:71,70:-7.98234,-4.87141,-4.26935,-3.35921,0,-2.75715 1|1:1:0,0,1:0:0:0,1:0,35:-2.88077,-2.88077,-2.88077,-0.30103,-0.30103,0 dDocent_Contig_3877 172 . C A 67.9332 . AB=0.333333;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=19;DPB=19;DPRA=1.8;EPP=9.52472;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=597;RO=16;RPL=3;RPP=9.52472;RPPR=37.7539;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:211:0:0:0,-1.80618,-19.3251 0/0:4:4,0:4:154:0:0:0,-1.20412,-14.2336 0/1:9:6,3:6:232:3:115:-8.01472,0,-18.5377 dDocent_Contig_3878 7 . T A 101.655 . AB=0.192308;ABP=24.391;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X6M1X2M;DP=29;DPB=29;DPRA=4.33333;EPP=13.8677;EPPR=37.7539;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=191;QR=611;RO=16;RPL=0;RPP=13.8677;RPPR=37.7539;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:12:5,2,3,0:5:189:2,3,0:80,117,0:-8.12524,-3.66699,-18.5581,0,-9.53694,-14.599,-9.63039,-19.1601,-15.502,-25.1246 0|0:3:3,0,0,0:3:115:0,0,0:0,0,0:0,-0.90309,-10.7245,-0.90309,-10.7245,-10.7245,-0.90309,-10.7245,-10.7245,-10.7245 0|0:14:8,2,2,2:8:307:2,2,2:76,74,81:-4.28085,-0.458664,-25.0507,-0.642924,-19.6021,-25.2316,0,-18.9696,-19.1508,-24.6003 dDocent_Contig_3879 10 . G A 101.53 . AB=0.3;ABP=6.48466;AC=0;AF=0;AN=6;AO=3;CIGAR=1X3M1X2M1X;DP=62;DPB=62;DPRA=0.27027;EPP=9.52472;EPPR=109.412;GTI=0;LEN=1;MEANALT=2;MQM=12;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.979592;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=1873;RO=49;RPL=0;RPP=9.52472;RPPR=109.412;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:15:11,0,0,4:11:416:0,0,4:0,0,163:-10.543,-13.8543,-47.9316,-13.8543,-47.9316,-47.9316,0,-34.4765,-34.4765,-33.2724 0|0:37:33,0,4,0:33:1257:0,4,0:0,156,0:0,-9.93399,-113.232,-5.22773,-108.709,-107.505,-9.93399,-113.232,-108.709,-113.232 0|0:10:5,3,2,0:5:200:3,2,0:115,76,0:-1.87262,-1.10303,-16.8044,0,-14.4209,-16.0481,-3.37777,-17.7075,-16.6502,-19.9732 dDocent_Contig_3880 35 . T C 188.531 . AB=0.347826;ABP=7.63648;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=43;DPB=43;DPRA=0.575;EPP=20.3821;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=304;QR=1323;RO=35;RPL=0;RPP=20.3821;RPPR=79.0118;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:782:0:0:0,-6.0206,-70.7048 0/1:16:12,4:12:427:4:157:-9.69195,0,-33.9403 0/1:7:3,4:3:114:4:147:-11.4799,0,-8.52501 dDocent_Contig_3881 10 . G A 240.31 . AB=0.3;ABP=13.4334;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=4M1X6M;DP=58;DPB=56.1818;DPRA=2.14286;EPP=22.5536;EPPR=98.5551;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=361;QR=1707;RO=44;RPL=0;RPP=22.5536;RPPR=98.5551;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:30:16,5,9:16:626:5,9:193,361:-24.9518,-14.9849,-64.9452,0,-36.7033,-48.7842 0|0:20:20,0,0:20:771:0,0:0,0:0,-6.0206,-69.7174,-6.0206,-69.7174,-69.7174 0|0:8:8,0,0:8:310:0,0:0,0:0,-2.40824,-28.263,-2.40824,-28.263,-28.263 dDocent_Contig_3882 9 . C A 228.43 . AB=0.229167;ABP=33.5919;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=131;DPB=131;DPRA=1.09756;EPP=31.2394;EPPR=259.244;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=502;QR=4541;RO=118;RPL=0;RPP=31.2394;RPPR=259.244;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=118;SRP=259.244;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:41,0:41:1568:0:0:0,-12.3422,-141.392 0/1:48:37,11:37:1427:11:424:-24.0649,0,-114.26 0/0:42:40,2:40:1546:2:78:0,-5.23979,-132.007 dDocent_Contig_3883 11 . G A 196.846 . AB=0.466667;ABP=3.15506;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X3M1X;DP=29;DPB=29;DPRA=2.14286;EPP=18.2106;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.571429;PAIREDR=0.909091;PAO=0;PQA=0;PQR=0;PRO=0;QA=275;QR=857;RO=22;RPL=0;RPP=18.2106;RPPR=50.7827;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:8,7:8:304:7:275:-20.6026,0,-23.202 0|0:13:13,0:13:512:0:0:0,-3.91339,-46.4276 0|0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_3884 23 . C G 48.6461 . AB=0.333333;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=24;DPB=24;DPRA=0.666667;EPP=7.35324;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.772727;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=866;RO=22;RPL=0;RPP=7.35324;RPPR=50.7827;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:4,2:4:164:2:80:-5.78539,0,-13.3437 0/0:10:10,0:10:390:0:0:0,-3.0103,-35.4546 0/0:8:8,0:8:312:0:0:0,-2.40824,-28.4392 dDocent_Contig_3885 23 . A G 97.4324 . AB=0.285714;ABP=8.59409;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=21;DPB=21;DPRA=4;EPP=11.6962;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=669;RO=17;RPL=0;RPP=11.6962;RPPR=39.9253;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:10,4:10:393:4:161:-10.6611,0,-31.5131 0/0:6:6,0:6:236:0:0:0,-1.80618,-21.6121 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 dDocent_Contig_3886 142 . T G 491.242 . AB=0.338235;ABP=18.4661;AC=3;AF=0.5;AN=6;AO=23;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=52.9542;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=40;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=838;QR=1635;RO=45;RPL=0;RPP=52.9542;RPPR=84.1269;RPR=23;RUN=1;SAF=0;SAP=52.9542;SAR=23;SRF=2;SRP=84.1269;SRR=43;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:16,19:16:569:19:693:-49.412,0,-38.8206 0/1:16:14,2:14:511:2:74:-1.87835,0,-39.4395 0/1:17:15,2:15:555:2:71:-1.36748,0,-42.7803 dDocent_Contig_3887 135 . N G 76.9006 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_3889 79 . G A 350.029 . AB=0.311475;ABP=21.8416;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=61;DPB=61;DPRA=0;EPP=44.2683;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=623;QR=1296;RO=42;RPL=19;RPP=44.2683;RPPR=94.2121;RPR=0;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:21,3:21:661:3:99:-2.01268,0,-52.5631 0/1:27:13,14:13:410:14:456:-33.2243,0,-29.0773 0/1:10:8,2:8:225:2:68:-3.44758,0,-17.5157 dDocent_Contig_3891 107 . N A 197.5 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=50.5;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=211;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:145:-12.6714,-1.20412,0 1/1:1:0,1:0:0:1:35:-3.49656,-0.30103,0 1/1:1:0,1:0:0:1:31:-3.09863,-0.30103,0 dDocent_Contig_3892 7 . T A 52.133 . AB=0.122449;ABP=63.6786;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=176;DPB=176;DPRA=0.771654;EPP=16.0391;EPPR=369.989;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=228;QR=6405;RO=169;RPL=0;RPP=16.0391;RPPR=369.989;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=169;SRP=369.989;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:43,6:43:1627:6:228:-6.13411,0,-131.949 0/0:56:55,0:55:2069:0:0:0,-16.5566,-186.284 0/0:71:71,0:71:2709:0:0:0,-21.3731,-244 dDocent_Contig_3894 29 . A G 821.142 . AB=0.179283;ABP=227.26;AC=3;AF=0.5;AN=6;AO=45;CIGAR=1X;DP=251;DPB=251;DPRA=0;EPP=92.2337;EPPR=375.576;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.844444;PAIREDR=0.893204;PAO=0;PQA=0;PQR=0;PRO=0;QA=1782;QR=8188;RO=206;RPL=0;RPP=100.727;RPPR=450.334;RPR=45;RUN=1;SAF=44;SAP=92.2337;SAR=1;SRF=197;SRP=375.576;SRR=9;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:87:71,16:71:2828:16:639:-31.6555,0,-228.446 0/1:64:52,12:52:2045:12:465:-22.9324,0,-164.984 0/1:100:83,17:83:3315:17:678:-31.243,0,-268.31 dDocent_Contig_3895 8 . T C 245.478 . AB=0.145161;ABP=138.622;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=1X3M1X;DP=199;DPB=198.8;DPRA=0;EPP=46.4397;EPPR=327.402;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=59.7333;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.945455;PAO=0;PQA=0;PQR=0;PRO=0;QA=782;QR=6434;RO=165;RPL=0;RPP=46.4397;RPPR=361.303;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=161;SRP=327.402;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:75:61,5,2:61:2357:5,2:195,75:0,-2.33296,-193.775,-12.2218,-189.137,-204.564 0|1:65:55,0,9:55:2141:0,9:0,354:-12.5667,-29.1233,-205.08,0,-175.959,-173.25 0|1:59:49,0,9:49:1936:0,9:0,353:-14.2998,-29.0503,-188.371,0,-159.341,-156.632 dDocent_Contig_3896 11 . T A 933.335 . AB=0.210526;ABP=30.668;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X2M1X;DP=70;DPB=70;DPRA=0;EPP=20.3821;EPPR=74.6689;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=308;QR=1297;RO=33;RPL=0;RPP=20.3821;RPPR=74.6689;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:32:7,0,25:7:277:0,25:0,988:-79.5842,-81.6914,-104.488,0,-23.1913,-15.6656 0|1:23:15,5,3:15:585:5,3:197,111:-11.7071,0,-46.5976,-7.15173,-39.0263,-54.3318 0|1:15:11,3,1:11:435:3,1:111,38:-5.75886,0,-34.9092,-5.95116,-32.6971,-41.4683 dDocent_Contig_3897 15 . T A 1523.09 . AB=0.339286;ABP=40.7009;AC=3;AF=0.5;AN=6;AO=57;CIGAR=1X2M8I2M;DP=168;DPB=284.8;DPRA=0;EPP=126.784;EPPR=209.3;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2239;QR=3759;RO=95;RPL=0;RPP=126.784;RPPR=209.3;RPR=57;RUN=1;SAF=57;SAP=126.784;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:45:22,23,0:22:878:23,0:906,0:-68.3067,0,-65.7876,-74.9293,-72.7113,-147.244 0|1:93:60,18,15:60:2362:18,15:707,544:-40.1047,0,-188.906,-13.7639,-149.915,-203.549 0|1:30:13,16,0:13:519:16,0:626,0:-47.6142,0,-37.9921,-51.5276,-42.8086,-94.2772 dDocent_Contig_3899 12 . C T 143.298 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=29;DPB=29;DPRA=1.05263;EPP=13.8677;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=965;RO=24;RPL=0;RPP=13.8677;RPPR=55.1256;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:476:0:0:0,-3.61236,-43.188 0/1:10:5,5:5:203:5:202:-15.5516,0,-15.6425 0/0:7:7,0:7:286:0:0:0,-2.10721,-26.1148 dDocent_Contig_3900 8 . T G 577.001 . AB=0.108696;ABP=64.1892;AC=3;AF=0.5;AN=6;AO=5;CIGAR=1X3M;DP=69;DPB=69;DPRA=0;EPP=13.8677;EPPR=87.6977;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=1517;RO=39;RPL=0;RPP=13.8677;RPPR=87.6977;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:12,11,0:12:470:11,0:391,0:-28.5913,0,-35.7285,-32.2037,-39.0398,-70.871 0|1:21:10,9,1:10:379:9,1:344,39:-25.1768,0,-28.3443,-24.9807,-27.8471,-55.7479 0|1:25:17,4,4:17:668:4,4:154,154:-7.52734,-0.0144915,-53.7622,0,-42.3232,-53.748 dDocent_Contig_3901 106 . T A 37.092 . AB=0.25;ABP=7.35324;AC=1;AF=0.25;AN=4;AO=2;CIGAR=1X3M1X3M1X;DP=18;DPB=18;DPRA=0.8;EPP=7.35324;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.75;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=625;RO=16;RPL=2;RPP=7.35324;RPPR=37.7539;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 0|1:8:6,2:6:235:2:76:-4.80602,0,-19.1136 0|0:10:10,0:10:390:0:0:0,-3.0103,-35.4573 dDocent_Contig_3902 26 . C T 190.764 . AB=0.166667;ABP=66.7068;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=2X;DP=131;DPB=131;DPRA=6.77778;EPP=33.4109;EPPR=254.901;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.431034;PAO=0;PQA=0;PQR=0;PRO=0;QA=559;QR=4623;RO=116;RPL=0;RPP=33.4109;RPPR=254.901;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:66:55,11:55:2198:11:439:-19.9972,0,-178.128 0|0:56:52,3:52:2061:3:120:0,-5.7689,-174.503 0|0:9:9,0:9:364:0:0:0,-2.70927,-33.1244 dDocent_Contig_3903 151 . C A 232.637 . AB=0.333333;ABP=9.52472;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=50;DPB=50;DPRA=0.586957;EPP=22.5536;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=366;QR=1591;RO=41;RPL=0;RPP=22.5536;RPPR=92.0407;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=92.0407;SRR=41;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:875:0:0:0,-6.92369,-79.0592 0/1:14:10,4:10:401:4:161:-10.6609,0,-32.2355 0/1:13:8,5:8:315:5:205:-14.9216,0,-24.8016 dDocent_Contig_3904 63 . T C 170.005 . AB=0.4375;ABP=3.55317;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=41;DPB=41;DPRA=0.32;EPP=18.2106;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=260;QR=1329;RO=34;RPL=7;RPP=18.2106;RPPR=76.8404;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:3,5:3:116:5:181:-14.2302,0,-8.40946 0/0:25:25,0:25:981:0:0:0,-7.52575,-88.597 0/1:8:6,2:6:232:2:79:-5.089,0,-18.8396 dDocent_Contig_3905 9 . C T 314.042 . AB=0.358974;ABP=9.74743;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X2M1X1M1X2M1X2M1X;DP=39;DPB=39;DPRA=0;EPP=33.4109;EPPR=39.9253;GTI=0;LEN=1;MEANALT=2.66667;MQM=39.2857;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.285714;PAIREDR=0.882353;PAO=0;PQA=0;PQR=0;PRO=0;QA=546;QR=659;RO=17;RPL=0;RPP=33.4109;RPPR=39.9253;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:11:5,0,4,0:5:199:0,4,0:0,157,0:-8.16908,-9.67423,-26.0893,0,-16.3883,-15.1842,-9.67423,-26.0893,-16.3883,-26.0893 0|1:21:11,3,6,1:11:422:3,6,1:117,234,39:-11.2158,-4.88746,-38.6615,0,-25.0126,-32.825,-11.3155,-36.3568,-31.425,-45.6784 1|0:7:1,0,4,2:1:38:0,4,2:0,155,78:-15.7359,-16.037,-19.1523,-3.30517,-6.41838,-5.21426,-9.62437,-12.7394,0,-12.1373 dDocent_Contig_3906 16 . C T 1084.85 . AB=0.461538;ABP=3.34437;AC=4;AF=0.666667;AN=6;AO=33;CIGAR=1X;DP=47;DPB=47;DPRA=0;EPP=74.6689;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1307;QR=561;RO=14;RPL=0;RPP=74.6689;RPPR=33.4109;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:21:0,21:0:0:21:843:-76.1781,-6.32163,0 0/1:19:9,10:9:358:10:396:-30.2778,0,-26.862 0/1:7:5,2:5:203:2:68:-4.34742,0,-16.5456 dDocent_Contig_3907 19 . C A 39.4038 . AB=0.115385;ABP=69.8248;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=77;DPB=77;DPRA=1.04;EPP=16.0391;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=2828;RO=71;RPL=0;RPP=16.0391;RPPR=157.185;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:1007:0:0:0,-7.52575,-90.924 0/1:20:18,2:18:716:2:80:-1.57098,0,-58.7404 0/1:32:28,4:28:1105:4:154:-4.60033,0,-90.0935 dDocent_Contig_3908 7 . T C 1163.51 . AB=0.516129;ABP=3.08035;AC=4;AF=0.666667;AN=6;AO=38;CIGAR=1X;DP=54;DPB=54;DPRA=0;EPP=85.5263;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=54.4737;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.9375;PAO=0;PQA=0;PQR=0;PRO=0;QA=1457;QR=588;RO=16;RPL=0;RPP=85.5263;RPPR=37.7539;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:8,8:8:285:8:301:-22.5873,0,-21.1711 0/1:15:7,8:7:265:8:302:-22.8789,0,-19.6951 1/1:23:1,22:1:38:22:854:-73.2033,-3.12642,0 dDocent_Contig_3909 7 . T G 148.598 . AB=0.102564;ABP=110.025;AC=0;AF=0;AN=6;AO=8;CIGAR=1X2M1X6M;DP=104;DPB=104;DPRA=0;EPP=20.3821;EPPR=168.042;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=58.7368;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=0.710526;PAO=0;PQA=0;PQR=0;PRO=0;QA=300;QR=2912;RO=76;RPL=0;RPP=20.3821;RPPR=168.042;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:43:30,2,5,0,6:30:1137:2,5,0,6:80,190,0,240:-10.7457,-13.1851,-105.396,-4.20195,-90.4155,-95.5015,-19.7766,-105.998,-97.0066,-112.589,0,-86.2243,-77.2332,-92.8157,-91.0095 0|0:26:20,2,0,2,1:20:762:2,0,2,1:77,0,78,40:-0.410474,-0.0916811,-62.0334,-6.43107,-62.6355,-68.9588,0,-56.2224,-62.5459,-61.9438,-3.25613,-59.4669,-65.7903,-59.3773,-65.4893 0|0:35:26,0,3,0,5:26:1013:0,3,0,5:0,110,0,190:-6.4067,-14.2335,-97.5202,-5.23708,-88.5306,-87.6275,-14.2335,-97.5202,-88.5306,-97.5202,0,-83.2849,-74.2962,-83.2849,-81.7798 dDocent_Contig_3910 18 . G A 241.906 . AB=0.193548;ABP=28.2974;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X1M1X;DP=31;DPB=31;DPRA=0;EPP=16.0391;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1.33333;MQM=54.6667;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=784;RO=20;RPL=0;RPP=16.0391;RPPR=46.4397;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:11:9,2,0:9:348:2,0:81,0:-4.31282,0,-28.3646,-7.02209,-28.9667,-35.5902 0|0:16:10,1,5:10:396:1,5:41,203:-13.7288,-13.3544,-45.6395,0,-29.1948,-31.075 0|1:4:1,3,0:1:40:3,0:119,0:-9.8597,0,-2.79156,-10.1607,-3.69465,-13.4569 dDocent_Contig_3911 7 . T C 415.696 . AB=0.253165;ABP=44.818;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X;DP=79;DPB=79;DPRA=0;EPP=46.4397;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=55.9;MQMR=58.5932;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.949153;PAO=0;PQA=0;PQR=0;PRO=0;QA=756;QR=2246;RO=59;RPL=0;RPP=46.4397;RPPR=131.127;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:11,12:11:426:12:452:-34.0533,0,-30.518 0/1:28:25,3:25:944:3:115:-2.28738,0,-76.8389 0/1:28:23,5:23:876:5:189:-8.92732,0,-70.7312 dDocent_Contig_3912 8 . T A 614.217 . AB=0.163934;ABP=62.8504;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=2X3M1X4M;DP=61;DPB=61;DPRA=0;EPP=24.725;EPPR=44.2683;GTI=0;LEN=1;MEANALT=4.33333;MQM=60;MQMR=60;NS=3;NUMALT=7;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=381;QR=736;RO=19;RPL=0;RPP=24.725;RPPR=44.2683;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:37:12,2,5,1,4,9,0,2:12:470:2,5,1,4,9,0,2:80,196,39,161,361,0,82:-26.1335,-23.2633,-61.3069,-13.6291,-45.7913,-50.7689,-26.5403,-58.7033,-49.0684,-64.885,-16.4758,-48.6389,-39.0039,-51.916,-53.9176,0,-32.1629,-22.5279,-35.44,-25.3752,-35.9365,-29.7459,-61.9089,-52.274,-65.1861,-55.1217,-38.6457,-68.3918,-22.9767,-55.14,-45.505,-58.4171,-48.3526,-31.8764,-61.6228,-61.0208 0|0:16:7,0,0,2,5,0,2,0:7:266:0,0,2,5,0,2,0:0,0,70,185,0,81,0:-13.0178,-15.125,-36.9419,-15.125,-36.9419,-36.9419,-9.43619,-31.2502,-31.2502,-30.6481,0,-21.8155,-21.8155,-16.1266,-20.3104,-15.125,-36.9419,-36.9419,-31.2502,-21.8155,-36.9419,-8.43682,-30.2586,-30.2586,-24.5669,-15.1307,-30.2586,-29.6566,-15.125,-36.9419,-36.9419,-31.2502,-21.8155,-36.9419,-30.2586,-36.9419 1|0:8:0,0,0,7,0,0,0,1:0:0:0,0,7,0,0,0,1:0,0,272,0,0,0,38:-25.8553,-25.8553,-25.8553,-25.8553,-25.8553,-25.8553,-3.49624,-3.49624,-3.49624,-1.38903,-25.8553,-25.8553,-25.8553,-3.49624,-25.8553,-25.8553,-25.8553,-25.8553,-3.49624,-25.8553,-25.8553,-25.8553,-25.8553,-25.8553,-3.49624,-25.8553,-25.8553,-25.8553,-22.7399,-22.7399,-22.7399,0,-22.7399,-22.7399,-22.7399,-22.4388 dDocent_Contig_3913 93 . G T 78.1913 . AB=0.363636;ABP=4.78696;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=19;DPB=19;DPRA=0.6875;EPP=11.6962;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=141;QR=518;RO=15;RPL=4;RPP=11.6962;RPPR=35.5824;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:275:0:0:0,-2.40824,-25.0848 0/1:6:5,1:5:174:1:36:-1.79209,0,-14.1958 0/1:5:2,3:2:69:3:105:-8.29094,0,-5.04751 dDocent_Contig_3914 19 . G T 1230.93 . AB=0.293785;ABP=68.3876;AC=3;AF=0.5;AN=6;AO=52;CIGAR=1X;DP=177;DPB=177;DPRA=0;EPP=115.927;EPPR=274.444;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.984;PAO=0;PQA=0;PQR=0;PRO=0;QA=1990;QR=4874;RO=125;RPL=0;RPP=115.927;RPPR=274.444;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=125;SRP=274.444;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:33,25:33:1269:25:953:-68.6179,0,-97.0187 0/1:60:48,12:48:1860:12:473:-24.8586,0,-149.551 0/1:59:44,15:44:1745:15:564:-33.333,0,-139.51 dDocent_Contig_3916 32 . T A 1616.34 . AB=0.392405;ABP=18.8978;AC=3;AF=0.5;AN=6;AO=62;CIGAR=1X;DP=158;DPB=158;DPRA=0;EPP=137.642;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2355;QR=3831;RO=96;RPL=0;RPP=137.642;RPPR=211.472;RPR=62;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:30,23:30:1190:23:875:-63.1129,0,-91.425 0/1:51:34,17:34:1362:17:631:-41.7658,0,-107.487 0/1:54:32,22:32:1279:22:849:-60.4723,0,-99.1192 dDocent_Contig_3917 17 . T A 18449.4 . AB=0.264323;ABP=373.529;AC=3;AF=0.5;AN=6;AO=203;CIGAR=1X2M1X;DP=768;DPB=768;DPRA=0;EPP=443.819;EPPR=185.414;GTI=0;LEN=1;MEANALT=4.66667;MQM=60;MQMR=59.9405;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.511905;PAO=0;PQA=0;PQR=0;PRO=0;QA=7935;QR=3175;RO=84;RPL=0;RPP=443.819;RPPR=185.414;RPR=203;RUN=1;SAF=203;SAP=443.819;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:255:34,57,148:34:1304:57,148:2237,5793:-543.002,-369.264,-459.124,-76.9593,0,-139.423 1|0:233:21,63,147:21:801:63,147:2466,5847:-611.916,-415.482,-462.226,-137.056,0,-158.513 1|0:280:29,83,162:29:1070:83,162:3232,6375:-693.738,-436.86,-499.376,-178.126,0,-216.859 dDocent_Contig_3918 21 . C A 159.893 . AB=0.209302;ABP=34.5724;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=15M1X2M;DP=54;DPB=53.5556;DPRA=1.95455;EPP=22.5536;EPPR=81.1833;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=327;QR=1406;RO=36;RPL=0;RPP=22.5536;RPPR=81.1833;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:11:8,0,0:8:307:0,0:0,0:0,-2.40824,-27.6065,-2.40824,-27.6065,-27.6065 0|1:11:2,2,4:2:80:2,4:76,145:-11.2283,-5.59425,-11.5899,0,-0.365207,-5.39342 0|1:32:26,1,5:26:1019:1,5:38,182:-7.02143,-11.729,-95.2468,0,-80.6907,-82.3017 dDocent_Contig_3919 209 . N G 131.259 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=142;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:142:-13.1248,-1.20412,0 ./.:.:.:.:.:.:.:. dDocent_Contig_3920 40 . G T 44.5063 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=42;DPB=42;DPRA=0.4;EPP=7.35324;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=1571;RO=40;RPL=0;RPP=7.35324;RPPR=89.8692;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:568:0:0:0,-4.21442,-51.4622 0/1:7:5,2:5:183:2:82:-5.67247,0,-14.7177 0/0:21:21,0:21:820:0:0:0,-6.32163,-74.1055 dDocent_Contig_3921 15 . G C 1303.84 . AB=0.0666667;ABP=51.9408;AC=0;AF=0;AN=6;AO=2;CIGAR=1X3M1X3M1X3M1X2M1X;DP=64;DPB=64;DPRA=3.75;EPP=7.35324;EPPR=48.6112;GTI=0;LEN=1;MEANALT=2;MQM=19;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=73;QR=825;RO=21;RPL=0;RPP=7.35324;RPPR=48.6112;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:26:10,0,16:10:390:0,16:0,645:-50.5575,-53.5678,-85.6201,0,-32.447,-27.6305 0|0:30:11,2,17:11:435:2,17:73,679:-52.7966,-53.3378,-88.5338,0,-33.2138,-30.8568 0|0:8:0,0,8:0:0:0,8:0,322:-29.3481,-29.3481,-29.3481,-2.40824,-2.40824,0 dDocent_Contig_3922 57 . C T 166.195 . AB=0.545455;ABP=3.20771;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=42;DPB=42;DPRA=0.709677;EPP=16.0391;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=1388;RO=36;RPL=6;RPP=16.0391;RPPR=81.1833;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:393:0:0:0,-3.0103,-35.7279 0/1:11:5,6:5:184:6:231:-17.8413,0,-13.6033 0/0:21:21,0:21:811:0:0:0,-6.32163,-73.3009 dDocent_Contig_3923 27 . G A 177.429 . AB=0.6;ABP=3.87889;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=38;DPB=38;DPRA=0.714286;EPP=16.0391;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=1291;RO=32;RPL=0;RPP=16.0391;RPPR=72.4974;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:405:0:0:0,-3.0103,-36.8104 0/1:10:4,6:4:159:6:240:-18.9648,0,-11.682 0/0:18:18,0:18:727:0:0:0,-5.41854,-65.7551 dDocent_Contig_3924 24 . G A 83.1077 . AB=0.25;ABP=11.6962;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=40;DPB=40;DPRA=1.33333;EPP=11.6962;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=152;QR=1451;RO=36;RPL=0;RPP=11.6962;RPPR=81.1833;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:12,4:12:485:4:152:-9.23155,0,-39.1839 0/0:7:7,0:7:284:0:0:0,-2.10721,-25.934 0/0:17:17,0:17:682:0:0:0,-5.11751,-61.7078 dDocent_Contig_3925 9 . C T 241.686 . AB=0.275;ABP=20.5992;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=46;DPB=46;DPRA=3.33333;EPP=26.8965;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.828571;PAO=0;PQA=0;PQR=0;PRO=0;QA=420;QR=1341;RO=35;RPL=0;RPP=26.8965;RPPR=79.0118;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:17,7:17:648:7:272:-17.6225,0,-51.4282 0/0:6:6,0:6:230:0:0:0,-1.80618,-21.0668 0/1:16:12,4:12:463:4:148:-8.8648,0,-37.2044 dDocent_Contig_3926 81 . C A 533.32 . AB=0.606061;ABP=6.23461;AC=2;AF=0.5;AN=4;AO=20;CIGAR=1X;DP=33;DPB=33;DPRA=0;EPP=46.4397;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=723;QR=467;RO=13;RPL=20;RPP=46.4397;RPPR=31.2394;RPR=0;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:7,3:7:251:3:109:-7.1577,0,-19.9272 ./.:.:.:.:.:.:.:. 0/1:23:6,17:6:216:17:614:-48.6691,0,-12.8667 dDocent_Contig_3927 127 . T G 67.303 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=1X1M1X;DP=17;DPB=17;DPRA=0.266667;EPP=7.35324;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=534;RO=15;RPL=0;RPP=7.35324;RPPR=35.5824;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=35.5824;SRR=15;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:6:6,0:6:215:0:0:0,-1.80618,-19.6992 1|1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 0|0:9:9,0:9:319:0:0:0,-2.70927,-29.0519 dDocent_Contig_3928 10 . A T 2264.19 . AB=0.396;ABP=26.4969;AC=3;AF=0.5;AN=6;AO=99;CIGAR=1X3M;DP=250;DPB=250;DPRA=0;EPP=217.986;EPPR=115.927;GTI=0;LEN=1;MEANALT=5.66667;MQM=35.2323;MQMR=37.5;NS=3;NUMALT=4;ODDS=5.55112e-17;PAIRED=0.515152;PAIREDR=0.423077;PAO=0;PQA=0;PQR=0;PRO=0;QA=2721;QR=2002;RO=52;RPL=0;RPP=217.986;RPPR=115.927;RPR=99;RUN=1;SAF=99;SAP=217.986;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:100:18,9,22,32,13:18:691:9,22,32,13:354,838,744,498:-72.9993,-61.5291,-101.296,-9.66221,-35.2559,-45.5248,-26.2833,-51.8669,0,-59.1159,-37.5372,-63.1275,-11.2609,-27.8721,-76.1046 0|1:59:13,3,16,23,3:13:506:3,16,23,3:120,616,639,122:-61.4972,-62.0085,-93.7117,-15.0739,-44.2919,-42.8788,-17.7397,-46.9375,0,-43.4101,-55.3404,-84.5464,-37.6225,-40.2641,-87.0475 0|1:91:21,4,13,44,9:21:805:4,13,44,9:154,522,1338,352:-95.6183,-95.379,-136.418,-58.9082,-94.5933,-97.2432,-0.834453,-36.4867,0,-29.799,-72.9902,-108.674,-72.2041,-14.0882,-112.528 dDocent_Contig_3930 51 . G A 31.5323 . AB=0.166667;ABP=14.5915;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=27;DPB=27;DPRA=1.6;EPP=7.35324;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=987;RO=25;RPL=2;RPP=7.35324;RPPR=57.2971;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:10,2:10:393:2:81:-4.07337,0,-32.1112 0/0:4:4,0:4:161:0:0:0,-1.20412,-14.8749 0/0:11:11,0:11:433:0:0:0,-3.31133,-39.323 dDocent_Contig_3931 9 . C T 1671.89 . AB=0.105263;ABP=491.592;AC=1;AF=0.166667;AN=6;AO=38;CIGAR=1X3M;DP=361;DPB=361;DPRA=0;EPP=85.5263;EPPR=428.619;GTI=0;LEN=1;MEANALT=4.66667;MQM=56.2105;MQMR=40.5204;NS=3;NUMALT=4;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1411;QR=7626;RO=196;RPL=0;RPP=85.5263;RPPR=428.619;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=196;SRP=428.619;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:147:99,0,8,27,10:99:3831:0,8,27,10:0,274,954,387:-42.0916,-71.8936,-326.077,-49.8833,-304.067,-301.659,0,-254.181,-232.171,-246.053,-45.2722,-299.455,-277.445,-227.559,-296.444 0|1:73:36,0,16,12,8:36:1407:0,16,12,8:0,612,444,286:-39.3795,-50.2166,-155.804,0,-105.599,-100.782,-15.9628,-121.548,-71.3417,-117.936,-29.6069,-135.188,-84.9838,-100.934,-132.78 0|0:141:61,11,14,38,16:61:2388:11,14,38,16:429,525,1388,634:-89.4346,-96.2145,-244.787,-65.0767,-205.382,-212.763,0,-140.315,-109.186,-140.468,-62.8682,-203.172,-172.049,-106.976,-209.95 dDocent_Contig_3932 118 . C T 152.63 . AB=0.666667;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X1M1X;DP=33;DPB=33;DPRA=0.75;EPP=16.0391;EPPR=59.4686;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=210;QR=887;RO=26;RPL=0;RPP=16.0391;RPPR=59.4686;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:16:16,0:16:543:0:0:0,-4.81648,-49.193 0|0:8:8,0:8:274:0:0:0,-2.40824,-24.9939 0|1:9:2,6:2:70:6:210:-16.4844,0,-3.88929 dDocent_Contig_3933 100 . N T 99.7782 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=8X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=0;NS=1;NUMALT=1;ODDS=5.29832;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=113;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:3:0,3:0:0:3:113:-9.97565,-0.90309,0 .:.:.:.:.:.:.:. dDocent_Contig_3934 81 . G A 175.875 . AB=0.264706;ABP=19.3602;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=38;DPB=38;DPRA=4.25;EPP=22.5536;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=327;QR=1039;RO=29;RPL=9;RPP=22.5536;RPPR=65.983;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:11,4:11:404:4:150:-9.34922,0,-32.1847 0/0:4:4,0:4:146:0:0:0,-1.20412,-13.4977 0/1:19:14,5:14:489:5:177:-10.5567,0,-38.6181 dDocent_Contig_3936 17 . C A 133.359 . AB=0.384615;ABP=4.51363;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=53;DPB=53;DPRA=0.65;EPP=13.8677;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=0.979167;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=1871;RO=48;RPL=0;RPP=13.8677;RPPR=107.241;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:675:0:0:0,-5.11751,-61.0809 0/0:23:23,0:23:880:0:0:0,-6.92369,-79.5046 0/1:13:8,5:8:316:5:201:-14.5577,0,-24.8893 dDocent_Contig_3937 9 . C T 111.762 . AB=0.179487;ABP=37.8095;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=55;DPB=55;DPRA=1.21875;EPP=18.2106;EPPR=90.593;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.895833;PAO=0;PQA=0;PQR=0;PRO=0;QA=272;QR=1849;RO=48;RPL=0;RPP=18.2106;RPPR=107.241;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=46;SRP=90.593;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:18,3:18:694:3:116:-4.49607,0,-56.4726 0/0:16:16,0:16:612:0:0:0,-4.81648,-55.4175 0/1:18:14,4:14:543:4:156:-8.99875,0,-43.7975 dDocent_Contig_3939 112 . G T 40.5935 . AB=0.2;ABP=14.7363;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=25;DPB=25;DPRA=3;EPP=9.52472;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=760;RO=22;RPL=0;RPP=9.52472;RPPR=50.7827;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:208:0:0:0,-1.80618,-19.0596 0/0:4:4,0:4:139:0:0:0,-1.20412,-12.8527 0/1:15:12,3:12:413:3:105:-5.28071,0,-32.985 dDocent_Contig_3940 192 . G C 176.774 . AB=0.466667;ABP=3.15506;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=2X;DP=33;DPB=33;DPRA=0.416667;EPP=18.2106;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=264;QR=1036;RO=26;RPL=7;RPP=18.2106;RPPR=59.4686;RPR=0;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:3:2,1:2:81:1:40:-3.09259,0,-6.78264 0|1:12:6,6:6:241:6:224:-16.9007,0,-18.4541 0|0:18:18,0:18:714:0:0:0,-5.41854,-64.5845 dDocent_Contig_3941 107 . N T 345.073 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=26.8965;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=367;QR=0;RO=0;RPL=0;RPP=26.8965;RPPR=0;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:161:-14.8086,-1.50515,0 1/1:3:0,3:0:0:3:103:-9.60997,-0.90309,0 1/1:3:0,3:0:0:3:103:-9.60997,-0.90309,0 dDocent_Contig_3942 172 . T A 393.342 . AB=0.296296;ABP=22.4731;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=54;DPB=54;DPRA=0;EPP=37.7539;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=645;QR=1489;RO=38;RPL=16;RPP=37.7539;RPPR=85.5263;RPR=0;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=85.5263;SRR=38;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:19,2:19:759:2:82:-1.45805,0,-62.3095 0/1:17:15,2:15:582:2:76:-2.09675,0,-47.5998 0/1:16:4,12:4:148:12:487:-39.3635,0,-8.86147 dDocent_Contig_3943 15 . G A 1784.99 . AB=0.466165;ABP=4.33278;AC=3;AF=0.5;AN=6;AO=62;CIGAR=1X;DP=133;DPB=133;DPRA=0;EPP=137.642;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.935484;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2459;QR=2819;RO=71;RPL=0;RPP=137.642;RPPR=157.185;RPR=62;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:30,22:30:1182:22:859:-61.9628,0,-91.0108 0/1:49:23,26:23:920:26:1032:-78.4235,0,-68.3577 0/1:32:18,14:18:717:14:568:-41.8292,0,-55.2208 dDocent_Contig_3944 12 . C A 610.123 . AB=0.06639;ABP=396.587;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=2M1X11M;DP=241;DPB=233;DPRA=0;EPP=22.5536;EPPR=239.898;GTI=0;LEN=1;MEANALT=8.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=5.55112e-17;PAIRED=0.875;PAIREDR=0.863636;PAO=0;PQA=0;PQR=0;PRO=0;QA=623;QR=5168;RO=132;RPL=0;RPP=37.7539;RPPR=289.645;RPR=16;RUN=1;SAF=14;SAP=22.5536;SAR=2;SRF=126;SRP=239.898;SRR=6;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:104:60,19,0,4:60:2359:19,0,4:713,0,163:-39.552,0,-188.382,-57.6138,-194.102,-251.687,-44.1588,-180.653,-238.238,-237.034 0|0:57:32,6,0,3:32:1248:6,0,3:231,0,121:-9.34842,0,-100.816,-18.9814,-102.622,-121.59,-8.99779,-92.6455,-111.614,-110.711 0|1:80:40,9,4,9:40:1561:9,4,9:337,156,339:-15.7422,-0.180059,-125.813,-14.9562,-115.699,-142.09,0,-100.747,-115.519,-125.633 dDocent_Contig_3945 50 . G C 87.4622 . AB=0.235294;ABP=13.3567;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=28;DPB=28;DPRA=3.09091;EPP=11.6962;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.958333;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=913;RO=24;RPL=4;RPP=11.6962;RPPR=55.1256;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:13,4:13:505:4:160:-9.66629,0,-40.6772 0/0:3:3,0:3:118:0:0:0,-0.90309,-11.0022 0/0:8:8,0:8:290:0:0:0,-2.40824,-26.4377 dDocent_Contig_3946 31 . A G 490.127 . AB=0.566667;ABP=4.16842;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=38;DPB=38;DPRA=1.875;EPP=39.9253;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=662;QR=844;RO=21;RPL=0;RPP=39.9253;RPPR=48.6112;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:6,1:6:240:1:37:-1.59062,0,-19.8686 0/0:8:8,0:8:321:0:0:0,-2.40824,-29.2576 0/1:23:7,16:7:283:16:625:-49.6567,0,-18.9193 dDocent_Contig_3949 115 . C A 312.514 . AB=0.293103;ABP=24.5753;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=39.9253;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=571;QR=1351;RO=41;RPL=0;RPP=39.9253;RPPR=92.0407;RPR=17;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=92.0407;SRR=41;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:13,2:13:423:2:68:-1.94243,0,-33.8677 0/1:21:12,9:12:398:9:293:-20.3664,0,-29.8194 0/1:22:16,6:16:530:6:210:-12.6198,0,-41.3915 dDocent_Contig_3953 46 . A T 69.9039 . AB=0.285714;ABP=8.59409;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=2X;DP=20;DPB=20;DPRA=1.16667;EPP=11.6962;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=49;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=144;QR=626;RO=16;RPL=4;RPP=11.6962;RPPR=37.7539;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:4:2,2:2:81:2:82:-6.46449,0,-6.48161 0|1:10:8,2:8:315:2:62:-2.83935,0,-25.7033 0|0:6:6,0:6:230:0:0:0,-1.80618,-21.0657 dDocent_Contig_3954 23 . A C 43.3898 . AB=0.15;ABP=24.2907;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=38;DPB=38;DPRA=2.22222;EPP=9.52472;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1406;RO=35;RPL=0;RPP=9.52472;RPPR=79.0118;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:17,3:17:679:3:121:-5.2596,0,-55.4206 0/0:5:5,0:5:200:0:0:0,-1.50515,-18.3793 0/0:13:13,0:13:527:0:0:0,-3.91339,-47.7761 dDocent_Contig_3955 11 . T A 86.6339 . AB=0.178571;ABP=28.1373;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=76;DPB=76;DPRA=1.16667;EPP=13.8677;EPPR=140.302;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.4085;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.929577;PAO=0;PQA=0;PQR=0;PRO=0;QA=196;QR=2854;RO=71;RPL=0;RPP=13.8677;RPPR=157.185;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=69;SRP=140.302;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:23,5:23:935:5:196:-9.58421,0,-76.0225 0/0:21:21,0:21:833:0:0:0,-6.32163,-71.9703 0/0:27:27,0:27:1086:0:0:0,-8.12781,-94.1426 dDocent_Contig_3956 25 . A G 2019.53 . AB=0.56;ABP=6.91895;AC=3;AF=0.5;AN=6;AO=70;CIGAR=1X;DP=125;DPB=125;DPRA=0;EPP=155.013;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2693;QR=2108;RO=55;RPL=0;RPP=155.013;RPPR=122.441;RPR=70;RUN=1;SAF=70;SAP=155.013;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:11,8:11:420:8:302:-21.8157,0,-32.4312 0/1:36:12,24:12:469:24:927:-72.9001,0,-31.7231 0/1:70:32,38:32:1219:38:1464:-110.954,0,-88.9262 dDocent_Contig_3957 32 . G T 600.826 . AB=0.328767;ABP=21.6017;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=73;DPB=73;DPRA=0;EPP=55.1256;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9184;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=941;QR=1883;RO=49;RPL=0;RPP=55.1256;RPPR=109.412;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:10,12:10:399:12:468:-35.8446,0,-29.6447 0/1:13:8,5:8:317:5:190:-13.5513,0,-24.983 0/1:38:31,7:31:1167:7:283:-14.4034,0,-93.8599 dDocent_Contig_3958 111 . T C 419.999 . AB=0.644444;ABP=11.1654;AC=3;AF=0.5;AN=6;AO=29;CIGAR=1X1M2X3M2I2M;DP=45;DPB=51.8889;DPRA=0;EPP=65.983;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1.33333;MQM=25.7931;MQMR=60;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=726;QR=471;RO=14;RPL=0;RPP=65.983;RPPR=33.4109;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=0;SRP=33.4109;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:14:2,0,12:2:68:0,12:0,302:-20.2185,-20.8206,-26.3531,0,-5.85587,-2.24351 0|1:15:6,0,9:6:199:0,9:0,216:-12.7073,-14.5135,-30.6608,0,-16.4303,-13.721 0|1:16:6,2,8:6:204:2,8:67,208:-12.7706,-9.63404,-25.624,0,-11.6518,-14.1641 dDocent_Contig_3959 10 . T G 58.4484 . AB=0.131579;ABP=47.8112;AC=3;AF=0.5;AN=6;AO=5;CIGAR=1X3M;DP=57;DPB=57;DPRA=0;EPP=13.8677;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=0.8;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=1991;RO=50;RPL=0;RPP=13.8677;RPPR=111.584;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:12:11,0,1:11:433:0,1:0,38:-0.184909,-3.49624,-39.1289,0,-36.0135,-35.7125 0|1:26:22,0,4:22:872:0,4:0,161:-7.04849,-13.6712,-85.4411,0,-72.1711,-70.967 0|1:19:17,2,0:17:686:2,0:79,0:-0.224753,0,-56.351,-5.34226,-56.953,-61.9729 dDocent_Contig_3960 171 . A T 32.0583 . AB=0.25;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=19;DPB=19;DPRA=1.45455;EPP=7.35324;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=72;QR=675;RO=17;RPL=2;RPP=7.35324;RPPR=39.9253;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=39.9253;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:282:0:0:0,-2.10721,-25.7526 0/1:8:6,2:6:233:2:72:-4.427,0,-18.9312 0/0:4:4,0:4:160:0:0:0,-1.20412,-14.7834 dDocent_Contig_3963 19 . T C 940.546 . AB=0.464789;ABP=3.7749;AC=3;AF=0.5;AN=6;AO=33;CIGAR=1X;DP=71;DPB=71;DPRA=0;EPP=74.6689;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1312;QR=1522;RO=38;RPL=0;RPP=74.6689;RPPR=85.5263;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:7,8:7:283:8:320:-24.652,0,-21.3279 0/1:23:17,6:17:689:6:239:-14.9607,0,-55.4134 0/1:33:14,19:14:550:19:753:-58.1585,0,-39.9016 dDocent_Contig_3964 10 . T A 51.2399 . AB=0.230769;ABP=11.1951;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=42;DPB=42;DPRA=0.896552;EPP=9.52472;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.871795;PAO=0;PQA=0;PQR=0;PRO=0;QA=110;QR=1574;RO=39;RPL=0;RPP=9.52472;RPPR=87.6977;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:890:0:0:0,-6.62266,-80.4074 0/1:13:10,3:10:403:3:110:-6.34579,0,-32.7167 0/0:7:7,0:7:281:0:0:0,-2.10721,-25.6622 dDocent_Contig_3965 40 . T A 539.725 . AB=0.375;ABP=10.6105;AC=2;AF=0.333333;AN=6;AO=21;CIGAR=1X;DP=75;DPB=75;DPRA=1.47368;EPP=48.6112;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=805;QR=2169;RO=54;RPL=0;RPP=48.6112;RPPR=120.27;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:769:0:0:0,-5.71957,-69.5306 0/1:17:11,6:11:444:6:241:-16.9492,0,-35.1983 0/1:39:24,15:24:956:15:564:-39.3421,0,-74.6 dDocent_Contig_3966 56 . G A 36.2038 . AB=0.136364;ABP=28.2783;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=71;DPB=71;DPRA=0.897959;EPP=9.52472;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=2697;RO=68;RPL=3;RPP=9.52472;RPPR=150.67;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:518:0:0:0,-3.91339,-46.9662 0/0:36:36,0:36:1417:0:0:0,-10.8371,-127.795 0/1:22:19,3:19:762:3:123:-4.84213,0,-62.2791 dDocent_Contig_3967 139 . A G 587.659 . AB=0.644068;ABP=13.6468;AC=3;AF=0.5;AN=6;AO=38;CIGAR=1X;DP=59;DPB=59;DPRA=0;EPP=69.0688;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=24.3684;MQMR=52.5714;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.857143;PAO=0;PQA=0;PQR=0;PRO=0;QA=1487;QR=804;RO=21;RPL=0;RPP=85.5263;RPPR=48.6112;RPR=38;RUN=1;SAF=2;SAP=69.0688;SAR=36;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:9,7:9:345:7:279:-4.04218,0,-23.4978 0/1:17:7,10:7:263:10:384:-16.2783,0,-16.2603 0/1:26:5,21:5:196:21:824:-42.1618,0,-7.15642 dDocent_Contig_3968 163 . T C 46.5774 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=40;DPB=40;DPRA=0.424242;EPP=7.35324;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1476;RO=38;RPL=2;RPP=7.35324;RPPR=85.5263;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=85.5263;SRR=38;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:5,2:5:189:2:81:-5.57852,0,-15.2676 0/0:25:25,0:25:964:0:0:0,-7.52575,-87.0609 0/0:8:8,0:8:323:0:0:0,-2.40824,-29.4386 dDocent_Contig_3969 155 . A T 345.963 . AB=0.40625;ABP=5.45321;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=37;DPB=37;DPRA=3.2;EPP=31.2394;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=509;QR=915;RO=24;RPL=0;RPP=31.2394;RPPR=55.1256;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:5,3:5:196:3:117:-8.50159,0,-15.604 0/1:24:14,10:14:514:10:392:-28.4132,0,-39.3578 0/0:5:5,0:5:205:0:0:0,-1.50515,-18.835 dDocent_Contig_3970 8 . T C 3163.98 . AB=0.112426;ABP=223.511;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X1M;DP=169;DPB=169;DPRA=0;EPP=44.2683;EPPR=92.0407;GTI=0;LEN=1;MEANALT=2;MQM=57.8947;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=735;QR=1575;RO=41;RPL=0;RPP=44.2683;RPPR=92.0407;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:87:26,52,9:26:996:52,9:1965,348:-150.36,0,-66.0862,-129.677,-53.2313,-208.714 0|1:32:6,24,2:6:232:24,2:910,78:-70.9389,0,-11.8292,-66.3318,-12.6413,-84.7893 0|1:50:9,33,8:9:347:33,8:1257,309:-98.8149,0,-18.561,-76.1436,-3.11612,-102.233 dDocent_Contig_3972 37 . T C 260.242 . AB=0.32;ABP=10.0459;AC=4;AF=0.666667;AN=6;AO=8;CIGAR=1X4M;DP=25;DPB=25;DPRA=0;EPP=20.3821;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=322;QR=519;RO=13;RPL=0;RPP=20.3821;RPPR=31.2394;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:8:6,0,2:6:240:0,2:0,81:-5.27749,-7.08367,-26.8497,0,-20.1693,-19.5672 0|1:8:5,0,3:5:198:0,3:0,118:-8.59396,-10.0991,-26.3974,0,-16.6922,-15.7891 1|1:9:2,4,3:2:81:4,3:158,123:-15.8694,-3.47802,-8.95109,-6.31286,0,-12.0922 dDocent_Contig_3973 15 . A G 125.237 . AB=0.3125;ABP=7.89611;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=40;DPB=40;DPRA=1.33333;EPP=13.8677;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=1397;RO=35;RPL=0;RPP=13.8677;RPPR=79.0118;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:195:0:0:0,-1.50515,-17.9204 0/0:19:19,0:19:759:0:0:0,-5.71957,-68.6335 0/1:16:11,5:11:443:5:202:-13.7454,0,-35.4094 dDocent_Contig_3975 21 . T C 311.226 . AB=0.230769;ABP=43.9342;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X1M;DP=65;DPB=65;DPRA=0;EPP=27.4756;EPPR=64.7766;GTI=0;LEN=1;MEANALT=2;MQM=23.2667;MQMR=57.9722;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.916667;PAO=0;PQA=0;PQR=0;PRO=0;QA=349;QR=1412;RO=36;RPL=0;RPP=35.5824;RPPR=81.1833;RPR=15;RUN=1;SAF=14;SAP=27.4756;SAR=1;SRF=34;SRP=64.7766;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:20:15,4,1:15:575:4,1:159,25:-8.717,0,-44.8674,-11.5892,-44.4024,-57.1971 0|1:7:4,2,1:4:151:2,1:82,13:-5.76968,0,-11.9929,-6.46866,-12.0422,-18.5201 0|1:38:17,8,13:17:686:8,13:318,311:-20.3526,0,-54.251,-5.01215,-36.1756,-57.6596 dDocent_Contig_3977 14 . A G 224.347 . AB=0.384615;ABP=4.51363;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X2M1X3M1X;DP=34;DPB=34;DPRA=0;EPP=13.8677;EPPR=48.6112;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=189;QR=840;RO=21;RPL=0;RPP=13.8677;RPPR=48.6112;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:8:7,0,1:7:278:0,1:0,41:-1.68633,-3.79354,-26.6689,0,-23.2832,-22.9822 0|0:13:11,0,2:11:442:0,2:0,82:-3.86629,-7.17762,-43.5945,0,-36.8251,-36.223 1|0:13:3,5,5:3:120:5,5:189,193:-20.5296,-5.94573,-14.3311,-5.58373,0,-13.972 dDocent_Contig_3978 22 . T C 3803.22 . AB=0.103825;ABP=252.492;AC=0;AF=0;AN=6;AO=19;CIGAR=2X3M;DP=183;DPB=183;DPRA=0;EPP=44.2683;EPPR=44.2683;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=756;QR=744;RO=19;RPL=0;RPP=44.2683;RPPR=44.2683;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:64:0,5,1,11,36,11:0:0:5,1,11,36,11:193,41,436,1444,439:-155.128,-139.279,-137.774,-151.744,-135.895,-151.443,-119.241,-103.392,-115.856,-115.929,-36.1559,-20.3084,-32.7713,-0.267864,-25.3188,-118.974,-103.126,-115.59,-83.0867,0,-115.663 0|0:42:8,1,0,6,19,7:8:312:1,0,6,19,7:39,0,239,759,279:-60.108,-59.3106,-84.6541,-62.5162,-84.9551,-88.1608,-42.8359,-65.2745,-68.4802,-66.674,0,-22.4381,-25.6438,-5.96208,-19.9242,-39.5407,-61.9793,-65.185,-45.5042,-2.66656,-63.0778 0|0:77:11,1,5,2,52,6:11:432:1,5,2,52,6:41,200,81,2088,241:-168.731,-168.658,-203.884,-155.568,-187.711,-189.59,-165.363,-197.506,-184.416,-200.288,0,-32.1403,-19.05,-28.8451,-19.8713,-152.183,-184.326,-171.236,-181.031,-15.6644,-185.904 dDocent_Contig_3979 19 . C T 1075.04 . AB=0.0740741;ABP=45.5551;AC=0;AF=0;AN=6;AO=2;CIGAR=1X1M1X1M1X1M1X1M1X3M;DP=64;DPB=64;DPRA=0;EPP=7.35324;EPPR=39.9253;GTI=0;LEN=1;MEANALT=5;MQM=42;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=673;RO=17;RPL=0;RPP=7.35324;RPPR=39.9253;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:27:3,2,15,5:3:120:2,15,5:80,584,195:-52.4796,-47.1676,-56.4527,-6.14158,-9.81711,-11.5156,-37.3519,-41.0246,0,-45.7345 0|0:16:6,0,8,2:6:235:0,8,2:0,319,80:-23.7018,-25.508,-44.832,0,-19.3175,-16.9093,-18.9177,-38.2428,-12.7276,-37.6408 0|0:21:8,0,12,1:8:318:0,12,1:0,472,40:-35.0396,-37.4478,-63.6357,0,-26.1799,-22.5675,-34.1513,-60.3401,-22.8845,-60.039 dDocent_Contig_3982 70 . T C 51.435 . AB=0.166667;ABP=26.1727;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=54;DPB=54;DPRA=1.6;EPP=11.6962;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=147;QR=1801;RO=50;RPL=4;RPP=11.6962;RPPR=111.584;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5981 0/1:24:20,4:20:735:4:147:-6.36516,0,-59.2549 0/0:5:5,0:5:174:0:0:0,-1.50515,-16.002 dDocent_Contig_3985 80 . G C 138.06 . AB=0.428571;ABP=3.63072;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=38;DPB=38;DPRA=1.16667;EPP=16.0391;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=210;QR=1014;RO=32;RPL=6;RPP=16.0391;RPPR=72.4974;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:227:0:0:0,-2.10721,-20.7488 0/0:17:17,0:17:531:0:0:0,-5.11751,-48.0913 0/1:14:8,6:8:256:6:210:-15.0278,0,-19.1402 dDocent_Contig_3986 42 . A T 107.733 . AB=0.152174;ABP=51.3492;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=140;DPB=140;DPRA=0.978723;EPP=18.2106;EPPR=291.816;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=283;QR=5235;RO=133;RPL=0;RPP=18.2106;RPPR=291.816;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=133;SRP=291.816;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:51:51,0:51:2000:0:0:0,-15.3525,-180.207 0/0:43:43,0:43:1706:0:0:0,-12.9443,-153.765 0/1:46:39,7:39:1529:7:283:-11.9951,0,-124 dDocent_Contig_3987 8 . T G 152.657 . AB=0.333333;ABP=10.9724;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X1M1X;DP=45;DPB=45;DPRA=0;EPP=29.068;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=28.75;MQMR=59.7273;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.969697;PAO=0;PQA=0;PQR=0;PRO=0;QA=460;QR=1247;RO=33;RPL=0;RPP=29.068;RPPR=74.6689;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:16:10,6:10:380:6:229:-7.10157,0,-29.7236 0|0:12:11,1:11:406:1:39:0,-0.576205,-33.8423 0|1:17:12,5:12:461:5:192:-10.4813,0,-36.723 dDocent_Contig_3989 41 . A G 617.667 . AB=0.444444;ABP=3.73412;AC=4;AF=0.666667;AN=6;AO=20;CIGAR=1X;DP=35;DPB=35;DPRA=0;EPP=46.4397;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=790;QR=591;RO=15;RPL=0;RPP=46.4397;RPPR=35.5824;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:8:0,8:0:0:8:316:-28.8046,-2.40824,0 0/1:14:10,4:10:394:4:163:-10.844,0,-31.603 0/1:13:5,8:5:197:8:311:-24.4368,0,-14.1919 dDocent_Contig_3990 26 . A G 942.58 . AB=0.134328;ABP=80.8268;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X2M1X3M;DP=92;DPB=92;DPRA=0;EPP=22.5536;EPPR=94.2121;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=351;QR=1637;RO=42;RPL=0;RPP=22.5536;RPPR=94.2121;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:25:9,4,12,0:9:341:4,12,0:154,464,0:-35.4024,-25.469,-52.2175,0,-15.3068,-24.3394,-38.1117,-53.4216,-27.9517,-66.0649 0|1:48:24,0,18,6:24:948:0,18,6:0,719,231:-52.0079,-59.2326,-137.242,0,-78.0176,-72.5991,-40.2695,-118.277,-59.0529,-116.47 0|1:19:9,4,3,3:9:348:4,3,3:161,115,120:-10.5644,0,-27.374,-3.84023,-19.1407,-31.51,-3.38688,-18.6903,-22.5265,-31.0607 dDocent_Contig_3991 116 . T G 56.4712 . AB=0.210526;ABP=16.8392;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=38;DPB=38;DPRA=0.5;EPP=11.6962;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=144;QR=1216;RO=34;RPL=0;RPP=11.6962;RPPR=76.8404;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=76.8404;SRR=34;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8874 0/1:17:14,3:14:495:3:107:-4.8643,0,-39.7658 0/1:2:1,1:1:37:1:37:-3.09577,0,-3.09577 dDocent_Contig_3992 24 . T A 6522.93 . AB=0.697987;ABP=104.472;AC=3;AF=0.5;AN=6;AO=208;CIGAR=1X;DP=298;DPB=298;DPRA=0;EPP=454.677;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.971154;PAIREDR=0.955556;PAO=0;PQA=0;PQR=0;PRO=0;QA=8282;QR=3545;RO=90;RPL=0;RPP=454.677;RPPR=198.443;RPR=208;RUN=1;SAF=208;SAP=454.677;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:101:32,69:32:1236:69:2761:-218.196,0,-81.1085 0/1:69:27,42:27:1062:42:1665:-129.306,0,-75.0984 0/1:128:31,97:31:1247:97:3856:-308.508,0,-73.9653 dDocent_Contig_3993 27 . A C 424.159 . AB=0.264706;ABP=35.7101;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=42.0968;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=719;QR=1996;RO=50;RPL=0;RPP=42.0968;RPPR=111.584;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:14,10:14:543:10:404:-29.4953,0,-41.9851 0/1:9:4,5:4:157:5:195:-15.2141,0,-11.7992 0/1:35:32,3:32:1296:3:120:-0.65126,0,-106.366 dDocent_Contig_3994 59 . A C 513.706 . AB=0.375;ABP=10.6105;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X;DP=56;DPB=56;DPRA=0;EPP=48.6112;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=788;QR=1398;RO=35;RPL=21;RPP=48.6112;RPPR=79.0118;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:14,12:14:566:12:466:-34.4606,0,-43.4566 0/1:23:18,5:18:713:5:195:-10.9978,0,-57.5726 0/1:7:3,4:3:119:4:127:-9.62891,0,-8.9878 dDocent_Contig_3996 26 . T A 330.416 . AB=0.317073;ABP=14.9269;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=74;DPB=74;DPRA=2.48485;EPP=31.2394;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=514;QR=2459;RO=61;RPL=0;RPP=31.2394;RPPR=135.47;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:29,0:29:1169:0:0:0,-8.72987,-105.489 0/0:4:4,0:4:163:0:0:0,-1.20412,-15.0584 0/1:41:28,13:28:1127:13:514:-34.2631,0,-89.3698 dDocent_Contig_3998 9 . A G 85.2151 . AB=0.285714;ABP=8.59409;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=65;DPB=65;DPRA=0.54902;EPP=11.6962;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=151;QR=2345;RO=61;RPL=0;RPP=11.6962;RPPR=135.47;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:421:0:0:0,-3.31133,-38.2428 0/1:14:10,4:10:382:4:151:-9.74336,0,-30.5206 0/0:40:40,0:40:1542:0:0:0,-12.0412,-139.051 dDocent_Contig_3999 19 . A C 304.923 . AB=0.208333;ABP=56.2114;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X;DP=147;DPB=147;DPRA=2.125;EPP=37.7539;EPPR=285.302;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=629;QR=5151;RO=130;RPL=0;RPP=37.7539;RPPR=285.302;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=130;SRP=285.302;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:1103:0:0:0,-8.42884,-99.5584 0/0:47:46,1:46:1829:1:40:0,-10.1527,-160.834 0/1:72:56,15:56:2219:15:589:-31.7142,0,-178.267 dDocent_Contig_4000 44 . G T 73.8712 . AB=0.363636;ABP=4.78696;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=58;DPB=58;DPRA=0.468085;EPP=11.6962;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=129;QR=2128;RO=54;RPL=0;RPP=11.6962;RPPR=120.27;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:1110:0:0:0,-8.42884,-100.186 0/0:19:19,0:19:745:0:0:0,-5.71957,-67.3681 0/1:11:7,4:7:273:4:129:-8.60897,0,-21.6219 dDocent_Contig_4001 11 . T C 269.848 . AB=0.289474;ABP=17.6392;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=55;DPB=55;DPRA=1.11765;EPP=26.8965;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.5455;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.818182;PAO=0;PQA=0;PQR=0;PRO=0;QA=444;QR=1702;RO=44;RPL=0;RPP=26.8965;RPPR=98.5551;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:676:0:0:0,-5.11751,-60.9811 0/1:6:5,1:5:186:1:41:-2.28839,0,-15.2903 0/1:32:22,10:22:840:10:403:-26.9969,0,-66.2674 dDocent_Contig_4002 118 . C T 46.5001 . AB=0.1875;ABP=16.582;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=27;DPB=27;DPRA=0.727273;EPP=9.52472;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.791667;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=961;RO=24;RPL=3;RPP=9.52472;RPPR=55.1256;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:442:0:0:0,-3.31133,-40.1342 0/1:12:10,2:10:399:2:81:-4.07337,0,-32.6568 0/1:4:3,1:3:120:1:41:-2.89045,0,-9.98319 dDocent_Contig_4003 118 . G T 264.711 . AB=0.130435;ABP=30.2953;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=2X;DP=24;DPB=24;DPRA=0;EPP=11.6962;EPPR=24.725;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=336;RO=10;RPL=0;RPP=11.6962;RPPR=24.725;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=24.725;SRR=10;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:14:5,2,7:5:174:2,7:70,243:-18.2473,-14.0563,-27.6036,0,-8.45147,-12.0403 0|0:9:5,1,3:5:162:1,3:35,105:-7.03806,-5.69547,-18.4481,0,-10.1961,-12.1451 1|1:1:0,1,0:0:0:1,0:35,0:-3.49863,-0.30103,0,-3.49863,-0.30103,-3.49863 dDocent_Contig_4004 8 . T G 257.692 . AB=0.5;ABP=3.0103;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=36;DPB=36;DPRA=0.625;EPP=24.725;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=371;QR=994;RO=26;RPL=0;RPP=24.725;RPPR=59.4686;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:2,6:2:76:6:223:-18.0194,0,-4.80643 0/1:12:8,4:8:306:4:148:-10.0685,0,-24.2874 0/0:16:16,0:16:612:0:0:0,-4.81648,-55.418 dDocent_Contig_4005 33 . T G 1248.09 . AB=0.0909091;ABP=98.9499;AC=4;AF=0.666667;AN=6;AO=6;CIGAR=1X4M;DP=117;DPB=117;DPRA=0;EPP=16.0391;EPPR=102.898;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=1817;RO=46;RPL=0;RPP=16.0391;RPPR=102.898;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:51:30,13,8,0:30:1187:13,8,0:497,311,0:-31.7397,0,-93.782,-15.213,-72.1417,-110.504,-40.7706,-97.6954,-112.912,-138.467 1|1:38:6,12,16,4:6:233:12,16,4:456,633,161:-68.5356,-32.9536,-48.4845,-18.241,0,-32.5705,-57.0714,-38.8267,-24.1147,-75.0124 0|1:28:10,10,5,2:10:397:10,5,2:381,201,81:-28.2505,0,-29.6902,-14.6856,-16.1287,-45.8776,-24.5777,-26.0185,-40.7009,-56.6683 dDocent_Contig_4006 39 . T C 88.3834 . AB=0.153846;ABP=43.6001;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=43;DPB=43;DPRA=4.875;EPP=16.0391;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=1463;RO=37;RPL=0;RPP=16.0391;RPPR=83.3548;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:18,2:18:723:2:82:-1.75908,0,-59.3758 0/0:4:4,0:4:140:0:0:0,-1.20412,-12.941 0/1:19:15,4:15:600:4:163:-9.33886,0,-48.6123 dDocent_Contig_4007 11 . C T 36.4393 . AB=0.142857;ABP=26.2761;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=52;DPB=52;DPRA=1.35484;EPP=9.52472;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.77551;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=1917;RO=49;RPL=0;RPP=9.52472;RPPR=109.412;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:742:0:0:0,-5.71957,-67.1021 0/1:21:18,3:18:700:3:120:-4.86568,0,-56.9996 0/0:12:12,0:12:475:0:0:0,-3.61236,-43.1009 dDocent_Contig_4008 33 . G T 70.4177 . AB=0.222222;ABP=15.074;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=55;DPB=55;DPRA=0.809524;EPP=13.8677;EPPR=87.0897;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.9;PAO=0;PQA=0;PQR=0;PRO=0;QA=188;QR=1927;RO=50;RPL=0;RPP=13.8677;RPPR=111.584;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=47;SRP=87.0897;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:796:0:0:0,-6.32163,-71.9452 0/0:16:15,1:15:577:1:40:0,-0.820801,-48.2729 0/1:18:14,4:14:554:4:148:-8.26274,0,-44.7839 dDocent_Contig_4009 18 . T C 88.9574 . AB=0.208333;ABP=20.744;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=37;DPB=37;DPRA=0.923077;EPP=13.8677;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=196;QR=1284;RO=32;RPL=0;RPP=13.8677;RPPR=72.4974;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:523:0:0:0,-3.91339,-47.4146 0/1:17:15,2:15:600:2:74:-1.90651,0,-49.219 0/1:7:4,3:4:161:3:122:-9.26528,0,-12.7677 dDocent_Contig_4010 12 . T C 341.626 . 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AB=0.77907;ABP=61.1856;AC=3;AF=0.5;AN=6;AO=67;CIGAR=1X;DP=86;DPB=86;DPRA=0;EPP=148.499;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2567;QR=709;RO=19;RPL=0;RPP=148.499;RPPR=44.2683;RPR=67;RUN=1;SAF=67;SAP=148.499;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:5,26:5:192:26:992:-80.2606,0,-8.31808 0/1:13:2,11:2:76:11:423:-34.5096,0,-3.30128 0/1:42:12,30:12:441:30:1152:-91.3372,0,-27.3885 dDocent_Contig_4012 81 . T A 650.743 . 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AB=0.255319;ABP=27.4509;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=81;DPB=81;DPRA=0.691176;EPP=29.068;EPPR=150.67;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=467;QR=2705;RO=68;RPL=0;RPP=29.068;RPPR=150.67;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:18,6:18:725:6:226:-13.4722,0,-58.3493 0/1:23:16,6:16:641:6:241:-15.0529,0,-51.0123 0/0:34:34,0:34:1339:0:0:0,-10.235,-120.772 dDocent_Contig_4016 1 . N G 39.4142 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X1M1I2M;DP=2;DPB=2.5;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=34;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=44;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:44:-3.93705,-0.60206,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_4017 7 . T A 142.065 . AB=0.6;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1M1I1M2X2M;DP=58;DPB=57.8333;DPRA=0.16129;EPP=9.52472;EPPR=113.755;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=107;QR=1927;RO=51;RPL=0;RPP=9.52472;RPPR=113.755;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:31:31,0,0,0:31:1181:0,0,0:0,0,0:0,-9.33193,-106.59,-9.33193,-106.59,-106.59,-9.33193,-106.59,-106.59,-106.59 0|0:22:20,0,0,2:20:746:0,0,2:0,0,75:-0.497684,-6.51828,-67.5905,-6.51828,-67.5905,-67.5905,0,-61.4468,-61.4468,-60.8448 1|0:5:0,3,2,0:0:0:3,2,0:107,77,0:-15.4105,-6.70708,-5.80399,-9.07684,0,-8.47478,-15.4105,-6.70708,-9.07684,-15.4105 dDocent_Contig_4018 9 . T C 281.066 . AB=0.2;ABP=30.3709;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=3X1M1X;DP=75;DPB=75;DPRA=0;EPP=18.2106;EPPR=76.8404;GTI=0;LEN=1;MEANALT=6;MQM=57.1429;MQMR=60;NS=3;NUMALT=9;ODDS=0;PAIRED=0.857143;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=269;QR=1281;RO=34;RPL=0;RPP=18.2106;RPPR=76.8404;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:35:15,2,2,6,0,0,0,1,7,2:15:562:2,2,6,0,0,0,1,7,2:76,76,218,0,0,0,39,269,77:-17.4305,-17.1113,-62.5806,-15.7361,-56.9795,-61.2092,-18.9809,-60.1857,-58.8133,-63.2072,-21.946,-63.1826,-61.8113,-65.0134,-68.0143,-21.946,-63.1826,-61.8113,-65.0134,-68.0143,-68.0143,-21.946,-63.1826,-61.8113,-65.0134,-68.0143,-68.0143,-68.0143,-18.7393,-59.9794,-58.6079,-61.8116,-64.8111,-64.8111,-64.8111,-64.5101,0,-41.2727,-39.9001,-43.1157,-46.105,-46.105,-46.105,-42.9009,-43.9978,-15.6127,-56.8564,-55.4848,-58.6901,-61.6882,-61.6882,-61.6882,-58.4848,-39.7769,-61.0861 0|0:20:14,0,1,0,0,0,4,0,0,0:14:527:0,1,0,0,0,4,0,0,0:0,34,0,0,0,156,0,0,0:-6.39698,-10.6114,-53.8292,-7.85744,-51.0791,-50.778,-10.6114,-53.8292,-51.0791,-53.8292,-10.6114,-53.8292,-51.0791,-53.8292,-53.8292,-10.6114,-53.8292,-51.0791,-53.8292,-53.8292,-53.8292,0,-43.231,-40.4817,-43.231,-43.231,-43.231,-42.0268,-10.6114,-53.8292,-51.0791,-53.8292,-53.8292,-53.8292,-43.231,-53.8292,-10.6114,-53.8292,-51.0791,-53.8292,-53.8292,-53.8292,-43.231,-53.8292,-53.8292,-10.6114,-53.8292,-51.0791,-53.8292,-53.8292,-53.8292,-43.231,-53.8292,-53.8292,-53.8292 0|0:20:5,0,3,3,2,4,0,3,0,0:5:192:0,3,3,2,4,0,3,0,0:0,111,87,79,155,0,115,0,0:-7.95041,-9.45556,-25.2457,-0.482304,-16.2846,-15.3816,-8.26139,-24.0427,-15.0874,-23.1396,-3.73485,-19.5317,-10.5679,-18.3327,-18.9296,-3.14697,-18.9376,-9.97798,-17.7516,-13.2251,-17.7335,-9.45556,-25.2457,-16.2846,-24.0427,-19.5317,-18.9376,-25.2457,0,-15.8036,-6.83681,-14.6057,-10.0865,-9.49601,-15.8036,-14.9006,-9.45556,-25.2457,-16.2846,-24.0427,-19.5317,-18.9376,-25.2457,-15.8036,-25.2457,-9.45556,-25.2457,-16.2846,-24.0427,-19.5317,-18.9376,-25.2457,-15.8036,-25.2457,-25.2457 dDocent_Contig_4019 13 . C T 97.82 . AB=0.357143;ABP=5.49198;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1M1I4M1X1M;DP=27;DPB=27.7143;DPRA=0.538462;EPP=13.8677;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=53;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=174;QR=840;RO=22;RPL=0;RPP=13.8677;RPPR=50.7827;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:8:6,2:6:225:2:68:-4.04117,0,-18.2027 0|0:13:13,0:13:497:0:0:0,-3.91339,-45.0767 0|1:6:3,3:3:118:3:106:-8.05925,0,-9.19671 dDocent_Contig_4020 42 . A T 228.098 . AB=0.25;ABP=26.8965;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=124;DPB=124;DPRA=0.669811;EPP=31.2394;EPPR=241.872;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=486;QR=4126;RO=110;RPL=0;RPP=31.2394;RPPR=241.872;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=110;SRP=241.872;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:33,11:33:1220:11:407:-23.7293,0,-96.841 0/0:27:25,2:25:903:2:79:0,-0.630178,-74.0785 0/0:53:52,0:52:2003:0:0:0,-15.6536,-180.343 dDocent_Contig_4021 110 . A G 42.6685 . AB=0.214286;ABP=12.937;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=40;DPB=40;DPRA=1.07692;EPP=9.52472;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=1252;RO=37;RPL=0;RPP=9.52472;RPPR=83.3548;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=83.3548;SRR=37;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:428:0:0:0,-3.91339,-38.8369 0/0:13:13,0:13:442:0:0:0,-3.91339,-40.1057 0/1:14:11,3:11:382:3:104:-5.48867,0,-30.4999 dDocent_Contig_4023 9 . T C 210.266 . AB=0.25;ABP=24.725;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=44;DPB=44;DPRA=5;EPP=24.725;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.9;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=385;QR=1227;RO=34;RPL=0;RPP=24.725;RPPR=76.8404;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:14,3:14:505:3:113:-5.42146,0,-40.6667 0/0:4:4,0:4:146:0:0:0,-1.20412,-13.497 0/1:23:16,7:16:576:7:272:-17.9235,0,-45.2418 dDocent_Contig_4024 13 . T G 167.748 . AB=0.16129;ABP=64.7922;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=138;DPB=138;DPRA=1.63158;EPP=24.725;EPPR=280.959;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=400;QR=5078;RO=128;RPL=0;RPP=24.725;RPPR=280.959;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=128;SRP=280.959;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:52,10:52:2073:10:400:-17.6957,0,-168.099 0/0:48:48,0:48:1887:0:0:0,-14.4494,-170.032 0/0:28:28,0:28:1118:0:0:0,-8.42884,-100.9 dDocent_Contig_4026 13 . G A 82.6094 . AB=0.222222;ABP=15.074;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=38;DPB=38;DPRA=1.8;EPP=11.6962;EPPR=68.4099;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=0.852941;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=1349;RO=34;RPL=0;RPP=11.6962;RPPR=76.8404;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=33;SRP=68.4099;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:14,4:14:538:4:158:-9.18173,0,-43.3316 0/0:8:8,0:8:324:0:0:0,-2.40824,-29.5292 0/0:12:12,0:12:487:0:0:0,-3.61236,-44.1806 dDocent_Contig_4027 8 . G A 134.442 . AB=0.555556;ABP=3.25157;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=31;DPB=31;DPRA=0.818182;EPP=13.8677;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=189;QR=995;RO=26;RPL=0;RPP=13.8677;RPPR=59.4686;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:494:0:0:0,-3.91339,-44.8059 0/0:9:9,0:9:346:0:0:0,-2.70927,-31.4992 0/1:9:4,5:4:155:5:189:-14.666,0,-11.6162 dDocent_Contig_4028 107 . N A 97.9833 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.29832;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:105:-9.79616,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_4029 7 . T A 702.47 . AB=0.133333;ABP=20.5268;AC=0;AF=0;AN=6;AO=2;CIGAR=1M1X1M;DP=44;DPB=52.6667;DPRA=0;EPP=7.35324;EPPR=37.7539;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=620;RO=16;RPL=0;RPP=7.35324;RPPR=37.7539;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:15:7,6,2:7:270:6,2:199,78:-13.645,0,-20.3636,-9.3246,-15.757,-30.9275 0|0:12:7,5,0:7:272:5,0:193,0:-14.0498,0,-21.2349,-16.157,-22.74,-38.5113 0|0:17:2,15,0:2:78:15,0:567,0:-46.2505,0,-2.28596,-46.8526,-6.80141,-53.2658 dDocent_Contig_4030 43 . T A 610.963 . AB=0.692308;ABP=11.3621;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1M1I1X;DP=37;DPB=47;DPRA=1.55556;EPP=46.4397;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=768;QR=679;RO=17;RPL=0;RPP=46.4397;RPPR=39.9253;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:26:8,18:8:316:18:688:-54.4238,0,-20.9799 0|0:9:9,0:9:363:0:0:0,-2.70927,-33.0347 1|1:2:0,2:0:0:2:80:-7.59179,-0.60206,0 dDocent_Contig_4031 22 . T A 159.202 . AB=0.157895;ABP=22.325;AC=3;AF=0.5;AN=6;AO=6;CIGAR=1X;DP=29;DPB=29;DPRA=1.57143;EPP=16.0391;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=918;RO=23;RPL=0;RPP=16.0391;RPPR=52.9542;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:283:0:0:0,-2.10721,-25.843 1/1:3:0,3:0:0:3:122:-11.3725,-0.90309,0 0/1:19:16,3:16:635:3:120:-5.46774,0,-51.7592 dDocent_Contig_4032 8 . G T 425.705 . AB=0.333333;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=2X1M1X;DP=89;DPB=89;DPRA=0.428571;EPP=16.0391;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=229;QR=2595;RO=69;RPL=0;RPP=16.0391;RPPR=152.842;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:18:12,0,6:12:429:0,6:0,229:-15.5568,-19.1691,-54.1295,0,-35.3337,-33.5276 0|0:42:39,3,0:39:1475:3,0:114,0:0,-2.01091,-122.399,-11.7402,-123.302,-132.651 0|0:29:18,11,0:18:691:11,0:419,0:-29.3325,0,-53.7945,-34.751,-57.1058,-91.4751 dDocent_Contig_4033 28 . C A 85.3081 . AB=0.146341;ABP=47.552;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=108;DPB=108;DPRA=1.22388;EPP=16.0391;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=4025;RO=102;RPL=0;RPP=16.0391;RPPR=224.5;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:35,6:35:1355:6:238:-9.45162,0,-109.859 0/0:29:29,0:29:1154:0:0:0,-8.72987,-104.137 0/0:38:38,0:38:1516:0:0:0,-11.4391,-136.682 dDocent_Contig_4034 167 . T G 33.4027 . 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AB=0.267857;ABP=29.2231;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X1M1X;DP=56;DPB=56;DPRA=0;EPP=35.5824;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=595;QR=1517;RO=40;RPL=0;RPP=35.5824;RPPR=89.8692;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:22:17,4:17:647:4:162:-8.24477,0,-51.8446 0|1:20:13,7:13:496:7:273:-18.9132,0,-38.9656 0|1:14:10,4:10:374:4:160:-10.5694,0,-29.7915 dDocent_Contig_4037 45 . G A 255.343 . AB=0.232143;ABP=37.909;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=56;DPB=56;DPRA=0;EPP=31.2394;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=500;QR=1700;RO=43;RPL=0;RPP=31.2394;RPPR=96.3836;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:11,6:11:431:6:237:-16.5851,0,-34.0237 0/1:30:26,4:26:1027:4:144:-4.27997,0,-83.6968 0/1:9:6,3:6:242:3:119:-8.38574,0,-19.4477 dDocent_Contig_4038 64 . G T 94.9915 . AB=0.214286;ABP=22.8638;AC=3;AF=0.5;AN=6;AO=6;CIGAR=1X;DP=28;DPB=28;DPRA=0;EPP=16.0391;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=228;QR=814;RO=22;RPL=6;RPP=16.0391;RPPR=50.7827;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:9,2:9:343:2:76:-3.90334,0,-27.9159 0/1:8:6,2:6:229:2:78:-4.99523,0,-18.5673 0/1:9:7,2:7:242:2:74:-4.31661,0,-19.4052 dDocent_Contig_4039 111 . T C 81.9432 . AB=0.25;ABP=18.2106;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=41;DPB=41;DPRA=0;EPP=20.3821;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=1093;RO=33;RPL=0;RPP=20.3821;RPPR=74.6689;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=74.6689;SRR=33;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:16,5:16:540:5:145:-7.01332,0,-42.5998 0/1:7:5,2:5:159:2:59:-3.49638,0,-12.5174 0/0:13:12,1:12:394:1:35:0,-0.414761,-32.2785 dDocent_Contig_4040 19 . C T 467.717 . 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T C 751.707 . 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A G 71.4254 . AB=0;ABP=0;AC=2;AF=0.5;AN=4;AO=2;CIGAR=1X2M5I1M7X2I1X;DP=4;DPB=20.5;DPRA=1;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=2;PQA=66;PQR=1372;PRO=41;QA=74;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:74:-6.65824,-0.60206,0 0|0:2:0,0:0:0:0:0:0,0,0 dDocent_Contig_4046 35 . C T 215.039 . AB=0.25641;ABP=23.1103;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X3M1D8M;DP=61;DPB=60.2308;DPRA=0.886364;EPP=24.725;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=387;QR=1942;RO=50;RPL=0;RPP=24.725;RPPR=111.584;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:30:24,6:24:925:6:241:-13.0358,0,-74.5297 0|1:9:5,4:5:197:4:146:-10.7869,0,-15.3968 0|0:22:21,0:21:820:0:0:0,-6.32163,-73.7135 dDocent_Contig_4047 32 . G C 666.632 . 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AB=0.181818;ABP=70.7208;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=2X3M;DP=153;DPB=153;DPRA=0;EPP=33.4109;EPPR=85.5263;GTI=0;LEN=1;MEANALT=4.5;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0.928571;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=529;QR=1458;RO=38;RPL=0;RPP=33.4109;RPPR=85.5263;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:40:9,5,13,9,3:9:340:5,13,9,3:185,494,333,111:-37.8081,-25.3844,-51.7491,0,-12.7383,-23.9581,-13.2777,-26.0147,-0.631501,-38.438,-31.4373,-44.1742,-18.7913,-32.0674,-58.404 0|0:37:13,5,1,14,4:13:502:5,1,14,4:193,35,520,106:-38.6606,-26.7154,-66.4551,-39.7265,-65.113,-80.6657,0,-25.4018,-38.4116,-37.0443,-34.2593,-59.6415,-72.6466,-32.9466,-74.2893 0|0:76:16,23,0,30,7:16:616:23,0,30,7:870,0,1140,255:-109.41,-42.9109,-86.568,-114.227,-93.4917,-164.807,-20.7333,0,-71.3152,-62.2843,-93.399,-72.6645,-143.979,-50.4882,-141.872 dDocent_Contig_4051 13 . A G 305.111 . AB=0.288462;ABP=23.2217;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=52;DPB=52;DPRA=0;EPP=35.5824;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=543;QR=1475;RO=37;RPL=0;RPP=35.5824;RPPR=83.3548;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:7,5:7:273:5:170:-12.0097,0,-21.3226 0/1:24:17,7:17:680:7:276:-17.9844,0,-54.3056 0/1:16:13,3:13:522:3:97:-4.23346,0,-42.5104 dDocent_Contig_4052 98 . N A 131.303 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=142;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:142:-13.1292,-1.20412,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_4054 67 . A T 129.712 . AB=0.2;ABP=14.7363;AC=3;AF=0.5;AN=6;AO=5;CIGAR=1X;DP=29;DPB=29;DPRA=0.708333;EPP=13.8677;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.875;PAO=0;PQA=0;PQR=0;PRO=0;QA=196;QR=906;RO=24;RPL=5;RPP=13.8677;RPPR=55.1256;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:12,3:12:462:3:118:-6.48706,0,-37.4094 0/0:12:12,0:12:444:0:0:0,-3.61236,-40.2984 1/1:2:0,2:0:0:2:78:-7.40347,-0.60206,0 dDocent_Contig_4055 21 . C T 261.838 . AB=0.3;ABP=13.4334;AC=4;AF=0.666667;AN=6;AO=10;CIGAR=1X;DP=31;DPB=31;DPRA=0;EPP=24.725;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=404;QR=848;RO=21;RPL=0;RPP=24.725;RPPR=48.6112;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:10,4:10:406:4:160:-10.5685,0,-32.6862 0/1:16:11,5:11:442:5:203:-13.8366,0,-35.3182 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 dDocent_Contig_4056 72 . A G 164.91 . AB=0.28;ABP=13.5202;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=80;DPB=80;DPRA=1.40476;EPP=22.5536;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.957746;PAO=0;PQA=0;PQR=0;PRO=0;QA=355;QR=2653;RO=71;RPL=9;RPP=22.5536;RPPR=157.185;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:18,7:18:653:7:273:-17.4118,0,-51.5706 0/0:34:32,2:32:1231:2:82:0,-2.45534,-103.298 0/0:21:21,0:21:769:0:0:0,-6.32163,-69.5286 dDocent_Contig_4057 8 . G A 150.591 . AB=0.228571;ABP=25.4075;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=56;DPB=56;DPRA=0.833333;EPP=20.3821;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=302;QR=1835;RO=48;RPL=0;RPP=20.3821;RPPR=107.241;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:792:0:0:0,-6.32163,-71.6028 0/1:17:13,4:13:500:4:150:-8.74716,0,-40.2298 0/1:18:14,4:14:543:4:152:-8.63066,0,-43.7975 dDocent_Contig_4058 12 . T G 533.328 . AB=0.428571;ABP=3.94093;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=49;DPB=49;DPRA=0.725;EPP=39.9253;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=665;QR=1272;RO=32;RPL=0;RPP=39.9253;RPPR=72.4974;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:8:0,8:0:0:8:318:-28.9866,-2.40824,0 0/1:21:12,9:12:475:9:347:-25.267,0,-36.7797 0/0:20:20,0:20:797:0:0:0,-6.0206,-72.0458 dDocent_Contig_4059 76 . G T 302.775 . AB=0.458333;ABP=3.37221;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=86;DPB=86;DPRA=0.774194;EPP=26.8965;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=423;QR=2799;RO=75;RPL=11;RPP=26.8965;RPPR=165.871;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:13,11:13:478:11:423:-31.1982,0,-36.1361 0/0:55:55,0:55:2051:0:0:0,-16.5566,-184.819 0/0:7:7,0:7:270:0:0:0,-2.10721,-24.6655 dDocent_Contig_4060 36 . G T 243.68 . AB=0;ABP=0;AC=0;AF=0;AN=6;AO=2;CIGAR=2X;DP=64;DPB=64;DPRA=0;EPP=7.35324;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=2063;RO=52;RPL=0;RPP=7.35324;RPPR=115.927;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:16:10,0,6:10:391:0,6:0,242:-17.3405,-20.3508,-52.4858,0,-32.5333,-30.7271 0|0:15:11,0,4:11:435:0,4:0,150:-9.34621,-12.6575,-48.4693,0,-36.1918,-34.9877 0|0:33:31,2,0:31:1237:2,0:81,0:0,-2.24826,-103.92,-9.33193,-104.522,-111.202 dDocent_Contig_4061 42 . T G 504.469 . AB=0.395833;ABP=7.5342;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=46.4397;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=779;QR=1899;RO=48;RPL=0;RPP=46.4397;RPPR=107.241;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:21,16:21:833:16:624:-45.3522,0,-64.1466 0/0:20:19,1:19:745:1:40:0,-2.02492,-63.375 0/1:11:8,3:8:321:3:115:-7.4134,0,-25.9468 dDocent_Contig_4062 127 . C A 83.1952 . AB=0.363636;ABP=4.78696;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=39;DPB=39;DPRA=0.785714;EPP=11.6962;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=139;QR=1167;RO=35;RPL=0;RPP=11.6962;RPPR=79.0118;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=79.0118;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:331:0:0:0,-3.0103,-30.1119 0/0:18:18,0:18:592:0:0:0,-5.41854,-53.5915 0/1:11:7,4:7:244:4:139:-9.54136,0,-18.9887 dDocent_Contig_4063 20 . G C 89.5803 . AB=0.75;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=29;DPB=29;DPRA=0.32;EPP=9.52472;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=4.33681e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1035;RO=26;RPL=0;RPP=9.52472;RPPR=59.4686;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:275:0:0:0,-2.10721,-25.1167 0/1:4:1,3:1:37:3:122:-10.1684,0,-2.49371 0/0:18:18,0:18:723:0:0:0,-5.41854,-65.3955 dDocent_Contig_4064 10 . T G 140.966 . AB=0.08;ABP=41.3151;AC=0;AF=0;AN=6;AO=2;CIGAR=1X3M1X1M1X;DP=50;DPB=50;DPRA=1.66667;EPP=7.35324;EPPR=89.8692;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=1513;RO=40;RPL=0;RPP=7.35324;RPPR=89.8692;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:10:5,0,5:5:190:0,5:0,196:-15.0049,-16.5101,-32.0865,0,-15.9622,-14.457 0|0:25:21,2,2:21:799:2,2:75,79:-0.189265,-0.377534,-65.2962,0,-59.396,-64.9368 0|0:15:14,0,0:14:524:0,0:0,0:0,-4.21442,-47.0893,-4.21442,-47.0893,-47.0893 dDocent_Contig_4065 36 . C T 166.611 . AB=0.333333;ABP=8.07707;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=58;DPB=58;DPRA=1.13514;EPP=18.2106;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=265;QR=2065;RO=51;RPL=0;RPP=18.2106;RPPR=113.755;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 0/1:21:14,7:14:572:7:265:-17.8815,0,-45.5 0/0:35:35,0:35:1412:0:0:0,-10.536,-127.332 dDocent_Contig_4067 171 . T C 208.035 . AB=0.538462;ABP=3.17734;AC=1;AF=0.25;AN=4;AO=7;CIGAR=1X;DP=22;DPB=22;DPRA=1.44444;EPP=18.2106;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=286;QR=596;RO=15;RPL=7;RPP=18.2106;RPPR=35.5824;RPR=0;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=35.5824;SRR=15;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:352:0:0:0,-2.70927,-32.0401 ./.:.:.:.:.:.:.:. 0/1:13:6,7:6:244:7:286:-22.2014,0,-18.4252 dDocent_Contig_4068 10 . T C 272.05 . AB=0.27907;ABP=21.2406;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=43;DPB=43;DPRA=0;EPP=29.068;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=475;QR=1187;RO=31;RPL=0;RPP=29.068;RPPR=70.3259;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:12,8:12:465:8:323:-23.4186,0,-36.1795 0/1:12:10,2:10:385:2:81:-4.07337,0,-31.3927 0/1:11:9,2:9:337:2:71:-3.4281,0,-27.369 dDocent_Contig_4069 25 . C T 506.786 . AB=0.365385;ABP=11.1951;AC=1;AF=0.166667;AN=6;AO=19;CIGAR=1X;DP=123;DPB=123;DPRA=1.46479;EPP=44.2683;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=747;QR=4112;RO=104;RPL=0;RPP=44.2683;RPPR=228.843;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1313:0:0:0,-9.93399,-118.437 0/0:38:38,0:38:1489:0:0:0,-11.4391,-134.262 0/1:52:33,19:33:1310:19:747:-51.9004,0,-102.512 dDocent_Contig_4070 82 . A G 674.801 . AB=0.509434;ABP=3.05127;AC=3;AF=0.5;AN=6;AO=27;CIGAR=2X;DP=53;DPB=53;DPRA=0;EPP=61.6401;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=957;QR=936;RO=26;RPL=27;RPP=61.6401;RPPR=59.4686;RPR=0;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:24:13,11:13:475:11:405:-29.5704,0,-35.8604 0|1:17:11,6:11:393:6:217:-14.7638,0,-30.5907 0|1:12:2,10:2:68:10:335:-26.8575,0,-2.84506 dDocent_Contig_4071 157 . C T 189.545 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=28;DPB=28;DPRA=2;EPP=18.2106;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=267;QR=801;RO=21;RPL=0;RPP=18.2106;RPPR=48.6112;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3,0:3:108:0:0:0,-0.90309,-10.073 0/0:11:11,0:11:414:0:0:0,-3.31133,-37.608 0/1:14:7,7:7:279:7:267:-20.1756,0,-21.2669 dDocent_Contig_4072 20 . G A 406.634 . AB=0.111111;ABP=736.003;AC=3;AF=0.5;AN=6;AO=62;CIGAR=1X;DP=558;DPB=558;DPRA=0;EPP=137.642;EPPR=1077.89;GTI=0;LEN=1;MEANALT=1.33333;MQM=58.2419;MQMR=56.9778;NS=3;NUMALT=1;ODDS=0;PAIRED=0.951613;PAIREDR=0.951515;PAO=0;PQA=0;PQR=0;PRO=0;QA=2389;QR=19037;RO=495;RPL=0;RPP=137.642;RPPR=1077.89;RPR=62;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=495;SRP=1077.89;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:192:171,21:171:6557:21:784:-13.0728,0,-519.33 0/1:213:187,26:187:7226:26:1024:-24.8374,0,-572.943 0/1:153:137,15:137:5254:15:581:-6.46992,0,-416.567 dDocent_Contig_4073 108 . T A 256.264 . AB=0.4;ABP=6.05036;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=74;DPB=74;DPRA=0.448718;EPP=33.4109;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=421;QR=1965;RO=60;RPL=0;RPP=33.4109;RPPR=133.299;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=133.299;SRR=60;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:12,7:12:377:7:219:-14.2975,0,-28.5155 0/1:16:9,7:9:301:7:202:-13.6477,0,-22.5989 0/0:39:39,0:39:1287:0:0:0,-11.7402,-116.123 dDocent_Contig_4076 18 . A T 58.0893 . AB=0.113924;ABP=105.289;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=79;DPB=79;DPRA=0;EPP=22.5536;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=357;QR=2825;RO=70;RPL=0;RPP=22.5536;RPPR=155.013;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:15,2:15:605:2:82:-2.66217,0,-49.6714 0/1:13:11,2:11:440:2:82:-3.86629,0,-36.042 0/1:49:44,5:44:1780:5:193:-2.98522,0,-145.659 dDocent_Contig_4077 98 . N G 512.773 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=17;CIGAR=1X;DP=17;DPB=17;DPRA=0;EPP=39.9253;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=559;QR=0;RO=0;RPL=17;RPP=39.9253;RPPR=0;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:16:0,16:0:0:16:524:-47.4732,-4.81648,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_4078 15 . A G 540.676 . AB=0.381818;ABP=9.68264;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X;DP=55;DPB=55;DPRA=0;EPP=48.6112;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.190476;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=814;QR=1362;RO=34;RPL=0;RPP=48.6112;RPPR=76.8404;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:12,13:12:483:13:502:-37.9876,0,-36.2949 0/1:8:5,3:5:196:3:114:-8.22357,0,-15.6056 0/1:22:17,5:17:683:5:198:-11.5731,0,-55.1768 dDocent_Contig_4079 19 . A G 455.333 . AB=0.6;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1X;DP=43;DPB=43;DPRA=2.77778;EPP=35.5824;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=596;QR=1090;RO=28;RPL=0;RPP=35.5824;RPPR=63.8115;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:10,15:10:394:15:596:-46.4539,0,-28.2915 0/0:5:5,0:5:192:0:0:0,-1.50515,-17.6487 0/0:13:13,0:13:504:0:0:0,-3.91339,-45.7071 dDocent_Contig_4080 15 . G A 551.373 . AB=0.37037;ABP=10.8919;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=1X;DP=79;DPB=79;DPRA=1.08;EPP=46.4397;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=811;QR=2337;RO=59;RPL=0;RPP=46.4397;RPPR=131.127;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:990:0:0:0,-7.52575,-89.3963 0/1:18:14,4:14:558:4:163:-9.63989,0,-45.1449 0/1:36:20,16:20:789:16:648:-47.8161,0,-60.4884 dDocent_Contig_4083 17 . T A 54.4366 . AB=0.230769;ABP=11.1951;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X2M2X;DP=62;DPB=62;DPRA=0.530612;EPP=9.52472;EPPR=120.27;GTI=0;LEN=1;MEANALT=3;MQM=40;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=106;QR=2151;RO=54;RPL=0;RPP=9.52472;RPPR=120.27;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:13:6,2,3,2:6:230:2,3,2:60,106,62:-6.36437,-3.92979,-22.2355,0,-14.6946,-18.0291,-3.20551,-17.8831,-13.9763,-21.5199 0|0:24:23,1,0,0:23:925:1,0,0:40,0,0:0,-3.77023,-80.1018,-6.92369,-80.4028,-83.2085,-6.92369,-80.4028,-83.2085,-83.2085 0|0:25:25,0,0,0:25:996:0,0,0:0,0,0:0,-7.52575,-89.9377,-7.52575,-89.9377,-89.9377,-7.52575,-89.9377,-89.9377,-89.9377 dDocent_Contig_4084 8 . G A 206.318 . AB=0.161765;ABP=138.153;AC=1;AF=0.166667;AN=6;AO=40;CIGAR=1X;DP=516;DPB=516;DPRA=0;EPP=89.8692;EPPR=1025.77;GTI=0;LEN=1;MEANALT=1.66667;MQM=38.35;MQMR=51.949;NS=3;NUMALT=1;ODDS=0;PAIRED=0.6;PAIREDR=0.876858;PAO=0;PQA=0;PQR=0;PRO=0;QA=1503;QR=17853;RO=471;RPL=0;RPP=89.8692;RPPR=1025.77;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=471;SRP=1025.77;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:136:113,22:113:4300:22:824:-21.5526,0,-326.145 0/0:223:210,9:210:7952:9:342:0,-40.5662,-657.07 0/0:157:148,9:148:5601:9:337:0,-23.2328,-417.088 dDocent_Contig_4085 12 . C T 2534.37 . 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G A 76.1916 . AB=0.235294;ABP=13.3567;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=27;DPB=27;DPRA=3.4;EPP=3.0103;EPPR=14.4341;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=54.5217;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.73913;PAO=0;PQA=0;PQR=0;PRO=0;QA=151;QR=880;RO=23;RPL=0;RPP=11.6962;RPPR=52.9542;RPR=4;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=17;SRP=14.4341;SRR=6;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:313:0:0:0,-2.40824,-28.1636 0/1:17:13,4:13:497:4:151:-8.83954,0,-38.7211 0/0:2:2,0:2:70:0:0:0,-0.60206,-6.58608 dDocent_Contig_4088 8 . G A 137.555 . 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T A 32.8703 . AB=0.125;ABP=42.0968;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=58;DPB=58;DPRA=2.46154;EPP=11.6962;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.981481;PAO=0;PQA=0;PQR=0;PRO=0;QA=153;QR=2051;RO=54;RPL=0;RPP=11.6962;RPPR=120.27;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:607:0:0:0,-4.81648,-54.9666 0/0:10:10,0:10:378:0:0:0,-3.0103,-34.3727 0/1:32:28,4:28:1066:4:153:-4.50865,0,-86.6123 dDocent_Contig_4100 13 . T C 115.271 . AB=0.15;ABP=24.2907;AC=3;AF=0.5;AN=6;AO=3;CIGAR=1X7M;DP=33;DPB=33;DPRA=0;EPP=9.52472;EPPR=55.1256;GTI=0;LEN=1;MEANALT=2;MQM=39;MQMR=60;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=112;QR=947;RO=24;RPL=0;RPP=9.52472;RPPR=55.1256;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:5:2,2,1:2:79:2,1:78,39:-5.82936,0,-5.92204,-3.50327,-3.5976,-9.70568 0|1:13:10,3,0:10:392:3,0:120,0:-7.27451,0,-31.7246,-10.2848,-32.6277,-42.5148 0|1:15:12,0,2:12:476:0,2:0,73:-2.11283,-5.72519,-44.9961,0,-39.3922,-38.7901 dDocent_Contig_4102 24 . G A 78.1636 . AB=0.2;ABP=18.6449;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=32;DPB=32;DPRA=3.33333;EPP=11.6962;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=1112;RO=28;RPL=0;RPP=11.6962;RPPR=63.8115;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4,0:4:160:0:0:0,-1.20412,-14.7834 0/0:8:8,0:8:318:0:0:0,-2.40824,-28.985 0/1:20:16,4:16:634:4:163:-9.03783,0,-51.3739 dDocent_Contig_4105 21 . C G 2222.17 . AB=0.666667;ABP=24.0012;AC=4;AF=0.666667;AN=6;AO=72;CIGAR=1X;DP=102;DPB=102;DPRA=0;EPP=159.356;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2820;QR=1190;RO=30;RPL=0;RPP=159.356;RPPR=68.1545;RPR=72;RUN=1;SAF=72;SAP=159.356;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:75:19,56:19:758:56:2210:-176.509,0,-45.9669 1/1:15:1,14:1:40:14:528:-43.8574,-0.519771,0 0/1:12:10,2:10:392:2:82:-4.16732,0,-32.0237 dDocent_Contig_4106 44 . T C 96.1632 . AB=0.227273;ABP=17.2236;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=56;DPB=56;DPRA=1.29412;EPP=13.8677;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.980392;PAO=0;PQA=0;PQR=0;PRO=0;QA=190;QR=2017;RO=51;RPL=0;RPP=13.8677;RPPR=113.755;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:783:0:0:0,-6.0206,-70.7874 0/0:14:14,0:14:562:0:0:0,-4.21442,-50.9227 0/1:22:17,5:17:672:5:190:-10.8382,0,-54.1893 dDocent_Contig_4107 161 . C T 76.8505 . AB=0.222222;ABP=15.074;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=78;DPB=78;DPRA=0.6;EPP=11.6962;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=2759;RO=74;RPL=4;RPP=11.6962;RPPR=163.699;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=163.699;SRR=74;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:819:0:0:0,-6.92369,-74.0103 0/1:18:14,4:14:530:4:155:-8.9069,0,-42.6225 0/0:37:37,0:37:1410:0:0:0,-11.1381,-127.178 dDocent_Contig_4108 133 . G A 325.832 . AB=0.413793;ABP=4.88226;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X4M;DP=66;DPB=66;DPRA=1.56757;EPP=29.068;EPPR=111.584;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=466;QR=1886;RO=50;RPL=0;RPP=29.068;RPPR=111.584;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=111.584;SRR=50;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:31:29,2,0:29:1078:2,0:77,0:0,-2.0231,-90.0056,-8.72987,-90.6077,-96.9306 0|1:29:15,2,12:15:576:2,12:70,466:-33.8048,-32.632,-79.3087,0,-41.6214,-43.6987 0|0:6:6,0,0:6:232:0,0:0,0:0,-1.80618,-21.2469,-1.80618,-21.2469,-21.2469 dDocent_Contig_4109 111 . T C 62.825 . AB=0.26087;ABP=14.4341;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=62;DPB=62;DPRA=0.294872;EPP=16.0391;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=166;QR=1737;RO=56;RPL=0;RPP=16.0391;RPPR=124.613;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=124.613;SRR=56;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:7,4:7:228:4:102:-6.12276,0,-17.5284 0/1:12:10,2:10:316:2:64:-2.4663,0,-25.1371 0/0:39:39,0:39:1193:0:0:0,-11.7402,-107.647 dDocent_Contig_4111 204 . G T 656.921 . AB=0.543478;ABP=3.76559;AC=2;AF=0.333333;AN=6;AO=25;CIGAR=1X;DP=75;DPB=75;DPRA=0.793103;EPP=57.2971;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=902;QR=1810;RO=50;RPL=25;RPP=57.2971;RPPR=111.584;RPR=0;RUN=1;SAF=0;SAP=57.2971;SAR=25;SRF=0;SRP=111.584;SRR=50;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:3,9:3:107:9:327:-26.1654,0,-6.36972 0/1:34:18,16:18:644:16:575:-41.8455,0,-48.0532 0/0:29:29,0:29:1059:0:0:0,-8.72987,-95.6231 dDocent_Contig_4112 8 . G A 211.119 . AB=0.232558;ABP=29.7245;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=80;DPB=80;DPRA=2.32432;EPP=24.725;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=388;QR=2664;RO=70;RPL=0;RPP=24.725;RPPR=155.013;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:983:0:0:0,-7.82678,-88.7816 0/0:11:11,0:11:412:0:0:0,-3.31133,-37.4272 0/1:43:33,10:33:1269:10:388:-22.3337,0,-101.559 dDocent_Contig_4114 107 . N A 37.3199 . AB=0.25;ABP=5.18177;AC=2;AF=1;AN=2;AO=1;CIGAR=3X2M;DP=4;DPB=4;DPRA=0;EPP=5.18177;EPPR=0;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=0;NS=1;NUMALT=2;ODDS=0.135746;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=37;QR=0;RO=0;RPL=0;RPP=5.18177;RPPR=0;RPR=1;RUN=1;SAF=1;SAP=5.18177;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:4:0,2,1:0:0:2,1:27,37:-4.83489,-3.09191,-2.48985,-1.75792,0,-1.45689 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_4115 204 . C T 71.5916 . AB=0.235294;ABP=13.3567;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=26;DPB=26;DPRA=3.77778;EPP=11.6962;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=146;QR=803;RO=22;RPL=4;RPP=11.6962;RPPR=50.7827;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:222:0:0:0,-1.80618,-20.3381 0/1:17:13,4:13:470:4:146:-8.3802,0,-37.5219 0/0:3:3,0:3:111:0:0:0,-0.90309,-10.3539 dDocent_Contig_4116 16 . T A 44095.3 . AB=0.338919;ABP=419.952;AC=6;AF=1;AN=6;AO=627;CIGAR=7M1X;DP=1850;DPB=1967.75;DPRA=0;EPP=1347.21;EPPR=85.5263;GTI=0;LEN=1;MEANALT=19.6667;MQM=59.9362;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.992026;PAIREDR=1;PAO=2.33333;PQA=93.3333;PQR=0;PRO=0;QA=24729;QR=1478;RO=38;RPL=0;RPP=1364.52;RPPR=85.5263;RPR=627;RUN=1;SAF=625;SAP=1347.21;SAR=2;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:385:5,170,16,136:5:187:170,16,136:6340,605,5352:-941.962,-424.926,-389.062,-893.874,-390.645,-904.369,-503.23,0,-468.948,-477.602 1|1:797:21,352,51,270:21:827:352,51,270:13061,1936,10657:-1871.06,-808.699,-770.773,-1718.63,-717.984,-1771.32,-1000.65,0,-909.934,-987.409 1|1:668:12,301,33,221:12:464:301,33,221:11288,1224,8720:-1600.22,-679.292,-626.791,-1503.69,-617.256,-1531.86,-886.435,0,-824.398,-858.016 dDocent_Contig_4117 11 . A G 8347.54 . AB=0.490683;ABP=3.49585;AC=3;AF=0.5;AN=6;AO=316;CIGAR=1X;DP=644;DPB=644;DPRA=0;EPP=689.196;EPPR=715.253;GTI=0;LEN=1;MEANALT=1;MQM=45.0032;MQMR=51.372;NS=3;NUMALT=1;ODDS=0;PAIRED=0.0632911;PAIREDR=0.131098;PAO=0;PQA=0;PQR=0;PRO=0;QA=12450;QR=12898;RO=328;RPL=0;RPP=689.196;RPPR=715.253;RPR=316;RUN=1;SAF=316;SAP=689.196;SAR=0;SRF=328;SRP=715.253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:290:149,141:149:5834:141:5520:-366.558,0,-401.746 0/1:203:80,123:80:3146:123:4863:-339.742,0,-211.921 0/1:151:99,52:99:3918:52:2067:-132.171,0,-289.535 dDocent_Contig_4118 7 . T A 574.586 . AB=0.193939;ABP=137.26;AC=2;AF=0.333333;AN=6;AO=33;CIGAR=1X;DP=224;DPB=224;DPRA=0;EPP=74.6689;EPPR=417.762;GTI=0;LEN=1;MEANALT=1;MQM=58.7576;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1248;QR=7284;RO=191;RPL=0;RPP=74.6689;RPPR=417.762;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=191;SRP=417.762;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:97:78,19:78:2966:19:723:-36.1981,0,-237.912 0/0:59:58,1:58:2213:1:39:0,-13.8715,-195.507 0/1:68:55,13:55:2105:13:486:-23.5792,0,-169.212 dDocent_Contig_4119 86 . G T 222.041 . AB=0.37037;ABP=6.95112;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=30;DPB=30;DPRA=4.5;EPP=24.725;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=355;QR=692;RO=20;RPL=10;RPP=24.725;RPPR=46.4397;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:8,2:8:275:2:72:-3.82642,0,-22.0745 0/1:17:9,8:9:313:8:283:-20.6951,0,-23.3895 0/0:3:3,0:3:104:0:0:0,-0.90309,-9.70309 dDocent_Contig_4120 20 . T A 460.009 . AB=0.287879;ABP=28.8048;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=66;DPB=66;DPRA=0;EPP=44.2683;EPPR=102.898;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=759;QR=1818;RO=46;RPL=0;RPP=44.2683;RPPR=102.898;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:24,6:24:964:6:240:-12.8012,0,-77.9169 0/1:21:15,6:15:571:6:235:-15.1968,0,-45.3967 0/1:14:7,7:7:283:7:284:-21.7196,0,-21.6286 dDocent_Contig_4121 16 . C T 116.282 . AB=0.214286;ABP=22.8638;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=31;DPB=31;DPRA=4.66667;EPP=16.0391;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=964;RO=25;RPL=0;RPP=16.0391;RPPR=57.2971;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3,0:3:90:0:0:0,-0.90309,-8.39238 0/1:9:7,2:7:282:2:80:-4.8823,0,-23.0433 0/1:19:15,4:15:592:4:160:-9.06386,0,-47.8963 dDocent_Contig_4122 9 . C T 54.0854 . AB=0.138889;ABP=43.7857;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=141;DPB=141;DPRA=1.03261;EPP=24.725;EPPR=287.473;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.7099;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=375;QR=4961;RO=131;RPL=0;RPP=24.725;RPPR=287.473;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=131;SRP=287.473;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:59:54,5:54:2029:5:185:0,-0.75161,-165.801 0/0:46:46,0:46:1734:0:0:0,-13.8474,-156.321 0/1:36:31,5:31:1198:5:190:-6.62937,0,-97.1699 dDocent_Contig_4123 24 . G A 39.4529 . AB=0.15;ABP=24.2907;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=51;DPB=51;DPRA=1.29032;EPP=9.52472;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=1872;RO=48;RPL=0;RPP=9.52472;RPPR=107.241;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:456:0:0:0,-3.61236,-41.3837 0/1:20:17,3:17:671:3:120:-5.16709,0,-54.7012 0/0:19:19,0:19:745:0:0:0,-5.71957,-67.3701 dDocent_Contig_4124 10 . T C 49.3815 . AB=0.185185;ABP=26.2531;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=32;DPB=32;DPRA=2.7;EPP=13.8677;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=34;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=1058;RO=27;RPL=0;RPP=13.8677;RPPR=61.6401;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:204:0:0:0,-1.50515,-18.744 0/1:15:12,3:12:463:3:120:-4.36428,0,-37.5027 0/1:12:10,2:10:391:2:78:-2.88763,0,-31.9343 dDocent_Contig_4125 78 . A T 73.6553 . AB=0.2;ABP=26.4622;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=68;DPB=68;DPRA=1.57895;EPP=16.0391;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.935484;PAO=0;PQA=0;PQR=0;PRO=0;QA=189;QR=2291;RO=62;RPL=3;RPP=3.0103;RPPR=5.25182;RPR=3;RUN=1;SAF=3;SAP=3.0103;SAR=3;SRF=35;SRP=5.25182;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:24,6:24:874:6:189:-8.28635,0,-69.9453 0/0:18:18,0:18:669:0:0:0,-5.41854,-60.5427 0/0:20:20,0:20:748:0:0:0,-6.0206,-67.6486 dDocent_Contig_4126 8 . G A 120.686 . AB=0.173913;ABP=24.253;AC=0;AF=0;AN=6;AO=4;CIGAR=1X3M1X;DP=57;DPB=57;DPRA=0;EPP=11.6962;EPPR=39.7082;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.85;PAO=0;PQA=0;PQR=0;PRO=0;QA=133;QR=1501;RO=40;RPL=0;RPP=11.6962;RPPR=89.8692;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=33;SRP=39.7082;SRR=7;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:23:13,4,2,4:13:490:4,2,4:133,77,143:-7.7496,-0.914162,-39.8713,-5.33264,-34.7517,-44.9045,0,-29.4197,-33.8483,-38.9685 0|0:16:12,0,3,1:12:442:0,3,1:0,117,29:-6.08004,-9.6924,-45.8346,0,-36.2118,-35.3087,-7.40866,-43.5311,-33.9091,-43.2301 0|0:18:15,0,2,0:15:569:0,2,0:0,78,0:-1.89631,-6.41176,-53.0494,0,-46.6365,-46.0345,-6.41176,-53.0494,-46.6365,-53.0494 dDocent_Contig_4127 8 . G A 76.6256 . AB=0.2;ABP=10.8276;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=2X3M1X;DP=26;DPB=26;DPRA=1;EPP=7.35324;EPPR=48.6112;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=834;RO=21;RPL=0;RPP=7.35324;RPPR=48.6112;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:6:4,0,2:4:159:0,2:0,78:-5.59729,-6.80141,-19.8975,0,-13.4882,-12.8862 0|0:10:10,0,0:10:395:0,0:0,0:0,-3.0103,-35.9092,-3.0103,-35.9092,-35.9092 0|1:10:7,2,0:7:280:2,0:79,0:-4.38385,0,-22.4549,-6.49106,-23.0569,-29.5566 dDocent_Contig_4128 8 . G T 530.922 . AB=0.283951;ABP=35.8505;AC=3;AF=0.5;AN=6;AO=23;CIGAR=1X;DP=81;DPB=81;DPRA=0;EPP=52.9542;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=890;QR=2141;RO=58;RPL=0;RPP=52.9542;RPPR=128.956;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:17,12:17:632:12:465:-33.472,0,-48.4815 0/1:23:18,5:18:657:5:195:-11.0005,0,-52.5254 0/1:29:23,6:23:852:6:230:-12.3365,0,-68.2654 dDocent_Contig_4129 191 . G A 41.8627 . AB=0.333333;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=32;DPB=32;DPRA=0.461538;EPP=7.35324;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=1189;RO=30;RPL=2;RPP=7.35324;RPPR=68.1545;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:343:0:0:0,-2.70927,-31.2223 0/1:6:4,2:4:161:2:76:-5.40808,0,-13.0687 0/0:17:17,0:17:685:0:0:0,-5.11751,-61.9786 dDocent_Contig_4131 23 . A T 102.46 . AB=0.214286;ABP=22.8638;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=33;DPB=33;DPRA=2.8;EPP=16.0391;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=225;QR=1009;RO=27;RPL=0;RPP=16.0391;RPPR=61.6401;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:13,4:13:487:4:147:-8.47218,0,-39.0527 0/1:11:9,2:9:329:2:78:-4.09214,0,-26.6452 0/0:5:5,0:5:193:0:0:0,-1.50515,-17.7401 dDocent_Contig_4132 7 . T C 967.178 . AB=0.52439;ABP=3.434;AC=3;AF=0.5;AN=6;AO=43;CIGAR=1X3M;DP=82;DPB=82;DPRA=0;EPP=96.3836;EPPR=33.4109;GTI=0;LEN=1;MEANALT=4.66667;MQM=37.4884;MQMR=56.8571;NS=3;NUMALT=4;ODDS=0;PAIRED=0.55814;PAIREDR=0.928571;PAO=0;PQA=0;PQR=0;PRO=0;QA=1322;QR=531;RO=14;RPL=0;RPP=96.3836;RPPR=33.4109;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:14:6,0,2,2,3:6:231:0,2,2,3:0,75,42,119:-1.32098,-3.12716,-22.1836,-0.684487,-19.7547,-19.1527,-0.485829,-19.5579,-17.135,-18.9558,0,-19.0723,-16.6557,-16.4583,-18.1692 0|1:41:7,3,1,21,3:7:262:3,1,21,3:72,38,665,119:-48.3186,-45.6634,-64.3428,-48.9345,-63.755,-68.2156,0,-14.8634,-18.1346,-13.304,-47.2928,-62.1135,-65.3835,-16.4976,-65.9712 1|1:27:1,6,0,20,0:1:38:6,0,20,0:114,0,615,0:-49.8105,-43.2698,-44.5844,-50.1115,-46.3906,-53.2324,-3.53634,0,-6.68414,-0.663541,-50.1115,-46.3906,-53.2324,-6.68414,-53.2324 dDocent_Contig_4133 142 . G C 119.39 . AB=0.571429;ABP=3.32051;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=29;DPB=29;DPRA=0.636364;EPP=11.6962;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=968;RO=25;RPL=0;RPP=11.6962;RPPR=57.2971;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:3,4:3:122:4:162:-12.8597,0,-9.26528 0/0:16:16,0:16:604:0:0:0,-4.81648,-54.6791 0/0:6:6,0:6:242:0:0:0,-1.80618,-22.1573 dDocent_Contig_4134 21 . A C 400.6 . AB=0.32;ABP=17.0814;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=60;DPB=60;DPRA=2.5;EPP=37.7539;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=630;QR=1739;RO=44;RPL=0;RPP=37.7539;RPPR=98.5551;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:26,13:26:1030:13:508:-34.3176,0,-81.2512 0/1:11:8,3:8:310:3:122:-8.06116,0,-24.9493 0/0:10:10,0:10:399:0:0:0,-3.0103,-36.2684 dDocent_Contig_4135 158 . C T 113.501 . AB=0.416667;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=23;DPB=23;DPRA=2.18182;EPP=13.8677;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=176;QR=628;RO=18;RPL=5;RPP=13.8677;RPPR=42.0968;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2,0:2:63:0:0:0,-0.60206,-5.98377 0/1:12:7,5:7:248:5:176:-12.5705,0,-19.0515 0/0:9:9,0:9:317:0:0:0,-2.70927,-28.8677 dDocent_Contig_4136 17 . G A 113.627 . AB=0.3125;ABP=7.89611;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=22;DPB=22;DPRA=1.33333;EPP=13.8677;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=56;MQMR=58.9412;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=644;RO=17;RPL=0;RPP=13.8677;RPPR=39.9253;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:222:0:0:0,-1.80618,-20.3192 0/1:9:6,3:6:240:3:120:-8.47863,0,-19.2659 0/1:7:5,2:5:182:2:80:-5.20273,0,-14.6211 dDocent_Contig_4137 4 . T C 1352.22 . AB=0.05;ABP=73.366;AC=0;AF=0;AN=6;AO=2;CIGAR=1X2M1X2M;DP=108;DPB=108;DPRA=0;EPP=7.35324;EPPR=59.4686;GTI=0;LEN=1;MEANALT=4;MQM=36;MQMR=60;NS=3;NUMALT=6;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=62;QR=979;RO=26;RPL=0;RPP=7.35324;RPPR=59.4686;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:40:14,2,0,0,3,18,3:14:528:2,0,0,3,18,3:62,0,0,102,668,113:-50.4535,-49.9438,-92.6196,-54.6679,-93.2216,-97.9474,-54.6679,-93.2216,-97.9474,-97.9474,-47.2099,-85.7623,-90.4875,-90.4875,-89.5844,0,-38.579,-43.302,-43.302,-35.8456,-37.8835,-45.4057,-83.9611,-88.6866,-88.6866,-81.227,-34.0396,-87.7835 0|0:35:7,0,0,3,1,15,9:7:261:0,0,3,1,15,9:0,0,98,34,537,262:-41.2968,-43.4041,-64.7836,-43.4041,-64.7836,-64.7836,-37.2153,-58.5946,-58.5946,-57.6915,-40.9161,-62.2959,-62.2959,-56.1072,-61.9949,0,-21.4046,-21.4046,-15.217,-18.9162,-16.8892,-24.7243,-46.1015,-46.1015,-39.9176,-43.6149,-2.73395,-43.3922 0|0:33:5,0,2,1,2,10,13:5:190:0,2,1,2,10,13:0,48,38,78,326,472:-47.1877,-48.6928,-64.2812,-44.9832,-60.5707,-59.9686,-45.5749,-61.1637,-57.4533,-60.8627,-42.2773,-57.8667,-54.1565,-54.749,-57.2647,-22.4094,-37.9984,-34.2921,-34.8809,-31.5835,-34.9881,-10.6821,-26.278,-22.5717,-23.1594,-19.8607,0,-22.3646 dDocent_Contig_4138 7 . T A 80.6879 . AB=0.140351;ABP=67.0497;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=85;DPB=85;DPRA=0;EPP=24.725;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=375;QR=2840;RO=75;RPL=0;RPP=24.725;RPPR=165.871;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:25,4:25:949:4:152:-5.31933,0,-76.9942 0/1:28:24,4:24:909:4:146:-5.06774,0,-73.6979 0/0:28:26,2:26:982:2:77:0,-1.1197,-81.3775 dDocent_Contig_4139 7 . T C 1251.99 . AB=0.56962;ABP=6.33623;AC=3;AF=0.5;AN=6;AO=45;CIGAR=1X;DP=79;DPB=79;DPRA=0;EPP=100.727;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.755556;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1686;QR=1258;RO=33;RPL=0;RPP=100.727;RPPR=74.6689;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:5:4,1:4:148:1:39:-2.39141,0,-12.1757 0/1:25:10,15:10:386:15:539:-41.31,0,-27.5714 0/1:49:19,29:19:724:29:1108:-85.2002,0,-50.6709 dDocent_Contig_4140 107 . N T 63.6737 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=67;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:67:-6.36304,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_4141 85 . T A 63.3329 . AB=0.192308;ABP=24.391;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=48;DPB=48;DPRA=0;EPP=16.0391;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.928571;PAO=0;PQA=0;PQR=0;PRO=0;QA=210;QR=1431;RO=42;RPL=6;RPP=16.0391;RPPR=94.2121;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:21,1:21:718:1:35:0,-3.12403,-61.4405 0/1:21:17,4:17:574:4:140:-6.6233,0,-45.659 0/1:5:4,1:4:139:1:35:-1.99348,0,-11.3475 dDocent_Contig_4142 35 . G A 35.491 . AB=0.2;ABP=10.8276;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=23;DPB=23;DPRA=1.53846;EPP=7.35324;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=836;RO=21;RPL=0;RPP=7.35324;RPPR=48.6112;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:436:0:0:0,-3.31133,-39.5918 0/0:2:2,0:2:79:0:0:0,-0.60206,-7.49724 0/1:10:8,2:8:321:2:82:-4.76938,0,-26.2453 dDocent_Contig_4143 2 . A G 482.583 . AB=0;ABP=0;AC=0;AF=0;AN=6;AO=2;CIGAR=2I1X1M1X2M2X;DP=38;DPB=51.4286;DPRA=0.814815;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=16;MQMR=0;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=71;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:11:0,2,9:0:0:2,9:71,317:-12.6458,-10.3763,-9.77421,-2.70927,-0.441522,0 0|0:13:0,0,13:0:0:0,13:0,459:-18.0381,-18.0381,-18.0381,-3.91339,-3.91339,0 0|0:14:0,0,14:0:0:0,14:0,498:-17.0953,-17.0953,-17.0953,-4.21442,-4.21442,0 dDocent_Contig_4144 116 . C T 279.229 . AB=0.647059;ABP=6.20364;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=32;DPB=32;DPRA=2.26667;EPP=26.8965;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=377;QR=709;RO=21;RPL=0;RPP=26.8965;RPPR=48.6112;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:451:0:0:0,-3.91339,-40.9217 0/1:17:6,11:6:198:11:377:-29.1433,0,-13.0269 0/0:2:2,0:2:60:0:0:0,-0.60206,-5.69897 dDocent_Contig_4145 59 . T C 665.071 . AB=0.489362;ABP=3.0565;AC=1;AF=0.166667;AN=6;AO=23;CIGAR=1X;DP=75;DPB=75;DPRA=3.35714;EPP=52.9542;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=903;QR=2050;RO=52;RPL=23;RPP=52.9542;RPPR=115.927;RPR=0;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:24,23:24:943:23:903:-67.4279,0,-71.0208 0/0:18:18,0:18:707:0:0:0,-5.41854,-63.9551 0/0:10:10,0:10:400:0:0:0,-3.0103,-36.3601 dDocent_Contig_4146 157 . G A 284.622 . AB=0.25;ABP=16.0391;AC=4;AF=0.666667;AN=6;AO=12;CIGAR=1X;DP=30;DPB=30;DPRA=0;EPP=29.068;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=403;QR=608;RO=18;RPL=0;RPP=29.068;RPPR=42.0968;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:200:-18.3279,-1.80618,0 0/1:9:8,1:8:271:1:34:-0.689641,0,-22.0115 0/1:15:10,5:10:337:5:169:-11.0275,0,-26.142 dDocent_Contig_4147 53 . G C 825.928 . AB=0.4;ABP=9.95901;AC=3;AF=0.5;AN=6;AO=32;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=72.4974;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.979167;PAO=0;PQA=0;PQR=0;PRO=0;QA=1215;QR=1851;RO=48;RPL=32;RPP=72.4974;RPPR=107.241;RPR=0;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:8,17:8:294:17:646:-50.9453,0,-19.2796 0/1:26:19,7:19:733:7:266:-16.4703,0,-58.4678 0/1:29:21,8:21:824:8:303:-18.8939,0,-65.7405 dDocent_Contig_4149 123 . T A 704.073 . AB=0.507937;ABP=3.04477;AC=3;AF=0.5;AN=6;AO=32;CIGAR=2X;DP=63;DPB=63;DPRA=0;EPP=72.4974;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1024;QR=1031;RO=31;RPL=0;RPP=72.4974;RPPR=70.3259;RPR=32;RUN=1;SAF=0;SAP=72.4974;SAR=32;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:28:15,13:15:500:13:401:-27.9607,0,-36.8906 0|1:29:13,16:13:426:16:528:-39.1048,0,-29.926 0|1:6:3,3:3:105:3:95:-7.05855,0,-7.98991 dDocent_Contig_4150 22 . A T 129.969 . AB=0.384615;ABP=4.51363;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=28;DPB=28;DPRA=1.73333;EPP=13.8677;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=194;QR=910;RO=23;RPL=0;RPP=13.8677;RPPR=52.9542;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:8,5:8:321:5:194:-13.9177,0,-25.3429 0/0:8:8,0:8:314:0:0:0,-2.40824,-28.6245 0/0:7:7,0:7:275:0:0:0,-2.10721,-25.1189 dDocent_Contig_4151 7 . T C 3215.59 . AB=0.0331492;ABP=345.659;AC=4;AF=0.666667;AN=6;AO=6;CIGAR=1X3M;DP=181;DPB=181;DPRA=0;EPP=16.0391;EPPR=48.6112;GTI=0;LEN=1;MEANALT=6.33333;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=225;QR=790;RO=21;RPL=0;RPP=16.0391;RPPR=48.6112;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:61:12,38,4,6,1,0:12:461:38,4,6,1,0:1451,152,229,39,0:-112.992,0,-26.4503,-112.435,-33.7421,-149.077,-97.8128,-19.0876,-131.493,-133.858,-113.398,-34.6814,-147.075,-132.458,-150.947,-116.604,-37.8894,-150.281,-135.664,-151.248,-154.454 0|1:41:4,24,0,5,4,0:4:151:24,0,5,4,0:913,0,190,148,0:-71.2116,0,-5.16098,-72.4157,-12.3857,-84.7934,-61.6129,-1.59936,-73.9894,-72.4842,-60.3065,-0.270267,-72.6845,-61.8818,-71.4804,-72.4157,-12.3857,-84.7934,-73.9894,-72.6845,-84.7934 1|1:79:5,47,7,8,1,5:5:178:47,7,8,1,5:1797,266,303,38,200:-140.997,-10.108,-10.4636,-127.937,-10.0613,-140.332,-117.896,0,-117.834,-129.991,-139.385,-21.4945,-139.322,-129.282,-153.587,-127.21,-9.31706,-127.148,-117.107,-138.596,-140.208 dDocent_Contig_4152 39 . C A 211.011 . AB=0.111111;ABP=345.862;AC=1;AF=0.166667;AN=6;AO=47;CIGAR=1X;DP=869;DPB=869;DPRA=0;EPP=105.07;EPPR=1443.02;GTI=0;LEN=1;MEANALT=1.66667;MQM=59.4255;MQMR=59.872;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.0376412;PAO=0;PQA=0;PQR=0;PRO=0;QA=1837;QR=31596;RO=797;RPL=0;RPP=105.07;RPPR=1733.67;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=762;SRP=1443.02;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:335:312,9:312:12306:9:355:0,-64.7172,-1073.95 0/1:261:232,29:232:9149:29:1118:-22.3229,0,-744.242 0/0:273:253,9:253:10141:9:364:0,-46.1477,-878.894 dDocent_Contig_4153 157 . C A 91.7622 . AB=0.4;ABP=3.87889;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=24;DPB=24;DPRA=1.42857;EPP=11.6962;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=145;QR=732;RO=20;RPL=0;RPP=11.6962;RPPR=46.4397;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:471:0:0:0,-3.91339,-42.7259 0/1:10:6,4:6:222:4:145:-10.3952,0,-17.3268 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 dDocent_Contig_4154 20 . A G 33.6183 . AB=0.2;ABP=10.8276;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=51;DPB=51;DPRA=0.444444;EPP=9.52472;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.333333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=1885;RO=48;RPL=0;RPP=9.52472;RPPR=107.241;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:13,1:13:493:1:38:0,-0.417151,-40.9089 0/1:10:8,2:8:313:2:80:-4.58128,0,-25.5241 0/0:27:27,0:27:1079:0:0:0,-8.12781,-97.3987 dDocent_Contig_4155 18 . G C 765.278 . AB=0.283186;ABP=49.1493;AC=3;AF=0.5;AN=6;AO=32;CIGAR=1X;DP=113;DPB=113;DPRA=0;EPP=72.4974;EPPR=176.728;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1259;QR=3207;RO=80;RPL=0;RPP=72.4974;RPPR=176.728;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:32,17:32:1272:17:673:-46.1493,0,-100.002 0/1:36:29,6:29:1165:6:243:-11.3034,0,-94.1834 0/1:28:19,9:19:770:9:343:-22.7917,0,-61.1913 dDocent_Contig_4156 20 . C A 642.2 . AB=0.636364;ABP=8.34028;AC=1;AF=0.166667;AN=6;AO=21;CIGAR=1X;DP=82;DPB=82;DPRA=1.34694;EPP=48.6112;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=834;QR=2402;RO=61;RPL=0;RPP=48.6112;RPPR=135.47;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:944:0:0:0,-7.22472,-85.2624 0/0:25:25,0:25:984:0:0:0,-7.52575,-88.8567 0/1:33:12,21:12:474:21:834:-65.4418,0,-33.0746 dDocent_Contig_4157 125 . G C 193.634 . AB=0.481481;ABP=3.09072;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=36;DPB=36;DPRA=0;EPP=33.4109;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=44.7857;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.714286;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=416;QR=732;RO=22;RPL=0;RPP=33.4109;RPPR=50.7827;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:12,5:12:400:5:153:-5.26779,0,-31.205 0/0:9:8,1:8:264:1:35:0,-2.10968,-23.4836 0/1:10:2,8:2:68:8:228:-16.413,0,-3.44758 dDocent_Contig_4158 106 . N A 64.6225 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=2X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:68:-6.45793,-0.60206,0 .:.:.:.:.:.:.:. dDocent_Contig_4159 26 . T C 61.5264 . AB=0.210526;ABP=16.8392;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=26;DPB=26;DPRA=1.35714;EPP=11.6962;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=152;QR=882;RO=22;RPL=0;RPP=11.6962;RPPR=50.7827;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:5:4,1:4:159:1:29:-1.39451,0,-13.1863 0/1:14:11,3:11:443:3:123:-7.25037,0,-36.0104 0/0:7:7,0:7:280:0:0:0,-2.10721,-25.5716 dDocent_Contig_4160 13 . C T 67.6313 . AB=0.153846;ABP=43.6001;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=59;DPB=59;DPRA=0.975;EPP=16.0391;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=223;QR=2115;RO=53;RPL=0;RPP=16.0391;RPPR=118.098;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:808:0:0:0,-6.0206,-73.037 0/1:26:23,3:23:901:3:107:-2.15316,0,-73.5682 0/1:13:10,3:10:406:3:116:-6.90401,0,-32.9866 dDocent_Contig_4161 7 . T A 747.047 . AB=0.378378;ABP=12.5178;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X7M;DP=74;DPB=74;DPRA=0;EPP=63.8115;EPPR=83.3548;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.785714;PAIREDR=0.972973;PAO=0;PQA=0;PQR=0;PRO=0;QA=1048;QR=1430;RO=37;RPL=0;RPP=63.8115;RPPR=83.3548;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:27:16,0,10:16:621:0,10:0,368:-25.3411,-30.1576,-81.195,0,-51.1134,-48.1031 0|1:11:6,3,2:6:228:3,2:114,70:-7.56042,0,-17.8181,-3.68306,-13.0332,-21.7798 0|1:36:15,3,16:15:581:3,16:116,610:-45.5199,-40.5068,-87.3347,0,-38.1991,-42.9104 dDocent_Contig_4163 13 . T G 598.358 . AB=0.0793651;ABP=99.8304;AC=0;AF=0;AN=6;AO=5;CIGAR=5M1X3M;DP=81;DPB=77.3333;DPRA=0;EPP=13.8677;EPPR=105.07;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=196;QR=1793;RO=47;RPL=0;RPP=13.8677;RPPR=105.07;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:18:11,7,0,0:11:427:7,0,0:246,0,0:-17.0609,0,-33.3662,-20.3722,-35.4734,-55.4802,-20.3722,-35.4734,-55.4802,-55.4802 0|0:31:22,4,1,4:22:816:4,1,4:152,35,154:-6.02461,-0.180571,-65.7337,-9.80312,-64.091,-76.2566,0,-54.2932,-63.9136,-65.5564 0|0:32:14,0,4,14:14:550:0,4,14:0,161,543:-40.3807,-44.5951,-89.8344,-31.3227,-76.5637,-75.3596,0,-45.2311,-31.9598,-41.0166 dDocent_Contig_4164 17 . C T 528.413 . AB=0.388889;ABP=8.80089;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X;DP=54;DPB=54;DPRA=0;EPP=8.07707;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=50;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.333333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=810;QR=1336;RO=33;RPL=0;RPP=48.6112;RPPR=74.6689;RPR=21;RUN=1;SAF=14;SAP=8.07707;SAR=7;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:7,3:7:281:3:114:-7.47671,0,-22.6514 0/1:30:17,13:17:691:13:506:-35.8284,0,-53.4879 0/1:14:9,5:9:364:5:190:-13.2529,0,-28.9103 dDocent_Contig_4165 10 . T A 74.1089 . AB=0.142857;ABP=49.5419;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=88;DPB=88;DPRA=1.94444;EPP=20.3821;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=308;QR=3116;RO=80;RPL=0;RPP=20.3821;RPPR=176.728;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:36,6:36:1390:6:229:-8.33103,0,-112.724 0/0:28:26,2:26:1015:2:79:0,-0.931208,-84.1521 0/0:18:18,0:18:711:0:0:0,-5.41854,-64.3169 dDocent_Contig_4166 16 . C T 3217.8 . AB=0.228448;ABP=448.799;AC=3;AF=0.5;AN=6;AO=159;CIGAR=1X;DP=696;DPB=696;DPRA=0;EPP=339.643;EPPR=1128.09;GTI=0;LEN=1;MEANALT=1.66667;MQM=56;MQMR=59.4101;NS=3;NUMALT=1;ODDS=0;PAIRED=0.591195;PAIREDR=0.226592;PAO=0;PQA=0;PQR=0;PRO=0;QA=5977;QR=20911;RO=534;RPL=0;RPP=348.274;RPPR=1162.58;RPR=159;RUN=1;SAF=158;SAP=339.643;SAR=1;SRF=530;SRP=1128.09;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:239:190,46:190:7389:46:1722:-83.7092,0,-592.885 0/1:237:168,69:168:6552:69:2596:-161.489,0,-515.603 0/1:220:176,44:176:6970:44:1659:-80.2983,0,-557.035 dDocent_Contig_4167 157 . C T 172.987 . AB=0.347826;ABP=7.63648;AC=2;AF=0.5;AN=4;AO=8;CIGAR=1X;DP=23;DPB=23;DPRA=0;EPP=20.3821;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=0.625;PAIREDR=0.866667;PAO=0;PQA=0;PQR=0;PRO=0;QA=289;QR=550;RO=15;RPL=8;RPP=20.3821;RPPR=35.5824;RPR=0;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=35.5824;SRR=15;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:8,5:8:295:5:182:-12.8218,0,-22.9899 0/1:10:7,3:7:255:3:107:-6.97178,0,-20.2916 ./.:.:.:.:.:.:.:. dDocent_Contig_4168 8 . G C 110.872 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=21;DPB=21;DPRA=0.333333;EPP=9.52472;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=689;RO=18;RPL=0;RPP=9.52472;RPPR=42.0968;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:416:0:0:0,-3.31133,-37.7889 1/1:3:0,3:0:0:3:117:-10.9104,-0.90309,0 0/0:7:7,0:7:273:0:0:0,-2.10721,-24.938 dDocent_Contig_4169 22 . C T 3101.03 . AB=0.127152;ABP=2737.94;AC=3;AF=0.5;AN=6;AO=288;CIGAR=1X;DP=2265;DPB=2265;DPRA=0;EPP=619.739;EPPR=3422.2;GTI=0;LEN=1;MEANALT=2.33333;MQM=59.7917;MQMR=58.2402;NS=3;NUMALT=1;ODDS=0;PAIRED=0.850694;PAIREDR=0.648346;PAO=0;PQA=0;PQR=0;PRO=0;QA=11036;QR=76734;RO=1965;RPL=0;RPP=628.394;RPPR=4269.95;RPR=288;RUN=1;SAF=287;SAP=619.739;SAR=1;SRF=1862;SRP=3422.2;SRR=103;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:832:750,80:750:29225:80:3034:-22.9066,0,-2362.72 0/1:563:488,72:488:18990:72:2728:-76.7581,0,-1531.75 0/1:870:727,136:727:28519:136:5274:-214.155,0,-2291.62 dDocent_Contig_4171 110 . G A 35.7181 . AB=0.176471;ABP=18.4661;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X2M1X;DP=48;DPB=48;DPRA=1.09677;EPP=9.52472;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=103;QR=1430;RO=43;RPL=0;RPP=9.52472;RPPR=96.3836;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=96.3836;SRR=43;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:17:14,3:14:432:3:103:-4.49251,0,-34.0609 0|0:19:17,0:17:586:0:0:0,-5.11751,-52.9759 0|0:12:12,0:12:412:0:0:0,-3.61236,-37.4104 dDocent_Contig_4172 8 . G T 1031.41 . AB=0.447059;ABP=5.07959;AC=3;AF=0.5;AN=6;AO=38;CIGAR=1X;DP=85;DPB=85;DPRA=0;EPP=85.5263;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.957447;PAO=0;PQA=0;PQR=0;PRO=0;QA=1460;QR=1788;RO=47;RPL=0;RPP=85.5263;RPPR=105.07;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:18,10:18:687:10:381:-26.2161,0,-53.7352 0/1:26:12,14:12:446:14:536:-40.7579,0,-32.6587 0/1:31:17,14:17:655:14:543:-39.8841,0,-49.9549 dDocent_Contig_4173 80 . T G 35.029 . AB=0.2;ABP=14.7363;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=31;DPB=31;DPRA=4.66667;EPP=11.6962;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=134;QR=920;RO=27;RPL=4;RPP=11.6962;RPPR=61.6401;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:12,1:12:412:1:35:0,-0.414761,-33.9115 0/1:15:12,3:12:403:3:99:-4.72167,0,-32.0783 0/0:3:3,0:3:105:0:0:0,-0.90309,-9.79616 dDocent_Contig_4174 20 . A G 80.8218 . AB=0.192308;ABP=24.391;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=38;DPB=38;DPRA=0;EPP=4.45795;EPPR=56.2114;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.9375;PAO=0;PQA=0;PQR=0;PRO=0;QA=225;QR=1264;RO=32;RPL=0;RPP=16.0391;RPPR=72.4974;RPR=6;RUN=1;SAF=4;SAP=4.45795;SAR=2;SRF=30;SRP=56.2114;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:12,2:12:473:2:81:-3.47131,0,-38.7033 0/1:12:9,3:9:355:3:113:-6.92664,0,-28.6971 0/0:12:11,1:11:436:1:31:0,-0.512906,-36.4915 dDocent_Contig_4175 43 . C T 508.199 . AB=0.5;ABP=3.0103;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=70;DPB=70;DPRA=0;EPP=44.2683;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.947368;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=728;QR=2015;RO=51;RPL=0;RPP=44.2683;RPPR=113.755;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:38,2:38:1503:2:74:0,-5.01634,-128.503 1/1:4:0,4:0:0:4:150:-13.8633,-1.20412,0 0/1:26:13,13:13:512:13:504:-37.877,0,-38.597 dDocent_Contig_4176 114 . G A 260.673 . AB=0.5;ABP=3.0103;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=31;DPB=31;DPRA=1.22222;EPP=26.8965;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=381;QR=681;RO=20;RPL=0;RPP=26.8965;RPPR=46.4397;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:298:0:0:0,-2.70927,-27.1431 0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085 0/1:17:7,10:7:239:10:345:-26.2646,0,-16.7261 dDocent_Contig_4177 113 . C T 351.947 . AB=0.463415;ABP=3.48696;AC=2;AF=0.333333;AN=6;AO=19;CIGAR=1X1M;DP=59;DPB=59;DPRA=1.13889;EPP=44.2683;EPPR=74.9036;GTI=0;LEN=1;MEANALT=1.5;MQM=32.7368;MQMR=47.4865;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.810811;PAO=0;PQA=0;PQR=0;PRO=0;QA=584;QR=1263;RO=37;RPL=0;RPP=44.2683;RPPR=83.3548;RPR=19;RUN=1;SAF=0;SAP=44.2683;SAR=19;SRF=1;SRP=74.9036;SRR=36;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:18:18,0,0:18:623:0,0:0,0:0,-5.41854,-45.5243,-5.41854,-45.5243,-45.5243 0|1:20:13,3,4:13:435:3,4:90,131:-6.16521,-3.26199,-37.6,0,-28.4448,-34.0597 0|1:21:6,0,15:6:205:0,15:0,453:-31.3481,-33.1543,-45.851,0,-12.9677,-8.45228 dDocent_Contig_4178 44 . A T 245.494 . AB=0.215686;ABP=38.8183;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=78;DPB=78;DPRA=0.944444;EPP=19.0002;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=447;QR=2654;RO=67;RPL=10;RPP=19.0002;RPPR=148.499;RPR=1;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:28,10:28:1095:10:406:-25.4615,0,-87.3957 0/0:27:27,0:27:1080:0:0:0,-8.12781,-97.487 0/1:13:12,1:12:479:1:41:-0.181177,0,-39.5475 dDocent_Contig_4180 1 . N T 369 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=10.1503;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=406;QR=0;RO=0;RPL=0;RPP=24.725;RPPR=0;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:10:0,10:0:0:10:406:-36.9,-3.0103,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_4181 8 . G A 51.4022 . AB=0.222222;ABP=15.074;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=37;DPB=37;DPRA=1.89474;EPP=11.6962;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=36.25;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=148;QR=1246;RO=33;RPL=0;RPP=11.6962;RPPR=74.6689;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:230:0:0:0,-1.80618,-21.0669 0/1:18:14,4:14:519:4:148:-6.36198,0,-41.6297 0/0:13:13,0:13:497:0:0:0,-3.91339,-45.0772 dDocent_Contig_4182 27 . G A 76.8607 . AB=0.0486111;ABP=257.857;AC=0;AF=0;AN=6;AO=7;CIGAR=6M1X;DP=225;DPB=219.714;DPRA=0.888889;EPP=18.2106;EPPR=424.276;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.0927835;PAO=0;PQA=0;PQR=0;PRO=0;QA=284;QR=7607;RO=194;RPL=0;RPP=18.2106;RPPR=424.276;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=194;SRP=424.276;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:81:77,4,0:77:3006:4,0:152,0:0,-10.3335,-256.612,-23.1793,-257.816,-270.282 0|0:77:62,7,5:62:2445:7,5:275,203:-3.95054,0,-199.052,-5.86803,-184.416,-205.529 0|0:67:55,7,2:55:2156:7,2:275,81:-6.05388,0,-175.169,-15.9297,-170.597,-192.611 dDocent_Contig_4183 9 . A T 1614.89 . AB=0.390977;ABP=16.7412;AC=5;AF=0.833334;AN=6;AO=52;CIGAR=1M1X9M;DP=133;DPB=133;DPRA=0;EPP=115.927;EPPR=63.8115;GTI=0;LEN=1;MEANALT=4.33333;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=0.961538;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1949;QR=1085;RO=28;RPL=0;RPP=115.927;RPPR=63.8115;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:56:18,4,9,5,20,0:18:699:4,9,5,20,0:153,349,196,747,0:-55.7377,-48.6009,-104.836,-32.4809,-77.3662,-87.2119,-45.036,-89.9208,-73.8016,-100.971,0,-44.8824,-28.7637,-41.3176,-51.4161,-61.1562,-106.04,-89.9212,-102.476,-57.4367,-118.595 1|1:31:1,0,3,5,18,3:1:39:0,3,5,18,3:0,112,197,679,117:-68.3461,-68.6471,-71.8532,-59.4774,-62.6836,-61.7805,-52.4369,-55.6432,-46.4735,-54.1381,-13.0055,-16.2115,-7.04528,0,-10.793,-59.0285,-62.2347,-53.0651,-46.0242,-6.59322,-61.3316 1|1:46:9,9,9,5,14,0:9:347:9,9,5,14,0:358,349,197,523,0:-41.0955,-14.3233,-40.1087,-15.4029,-14.4151,-41.1872,-27.5957,-26.6084,-27.6875,-54.5845,-0.988618,0,-1.08054,-13.272,-25.2659,-43.8048,-42.8179,-43.8965,-56.0896,-29.4804,-72.2983 dDocent_Contig_4185 7 . T C 543.004 . AB=0.275862;ABP=40.9736;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=87;DPB=87;DPRA=0;EPP=55.1256;EPPR=137.642;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=924;QR=2371;RO=62;RPL=0;RPP=55.1256;RPPR=137.642;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:21,7:21:808:7:269:-16.1453,0,-64.6167 0/1:8:5,3:5:191:3:113:-8.13117,0,-15.1499 0/1:51:36,14:36:1372:14:542:-33.7406,0,-108.382 dDocent_Contig_4186 68 . T G 771.165 . AB=0.574468;ABP=5.27418;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1X;DP=47;DPB=47;DPRA=0;EPP=61.6401;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1032;QR=738;RO=20;RPL=27;RPP=61.6401;RPPR=46.4397;RPR=0;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:1,11:1:40:11:414:-33.9936,0,-0.383319 0/1:16:10,6:10:366:6:236:-16.7961,0,-28.4661 0/1:19:9,10:9:332:10:382:-29.0151,0,-24.5091 dDocent_Contig_4187 10 . G A 541.299 . AB=0.210938;ABP=95.9086;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1X;DP=128;DPB=128;DPRA=0;EPP=61.6401;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1059;QR=3958;RO=101;RPL=0;RPP=61.6401;RPPR=222.329;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:22,4:22:866:4:152:-6.22087,0,-70.419 0/1:46:36,10:36:1412:10:395:-22.0607,0,-113.496 0/1:56:43,13:43:1680:13:512:-29.565,0,-134.578 dDocent_Contig_4188 82 . T C 143.525 . AB=0.428571;ABP=3.63072;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=34;DPB=34;DPRA=1.4;EPP=3.0103;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=216;QR=1039;RO=28;RPL=6;RPP=16.0391;RPPR=63.8115;RPR=0;RUN=1;SAF=3;SAP=3.0103;SAR=3;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3,0:3:117:0:0:0,-0.90309,-10.9104 0/1:14:8,6:8:307:6:216:-15.5736,0,-23.777 0/0:17:17,0:17:615:0:0:0,-5.11751,-55.6815 dDocent_Contig_4189 122 . T A 245.455 . AB=0.352941;ABP=9.39698;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=2X3M1X;DP=44;DPB=44;DPRA=1.7;EPP=29.068;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=51.3333;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=406;QR=1031;RO=32;RPL=0;RPP=29.068;RPPR=72.4974;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=72.4974;SRR=32;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:10:10,0:10:341:0:0:0,-3.0103,-31.0207 0|1:15:9,6:9:273:6:202:-13.9582,0,-20.351 0|1:19:13,6:13:417:6:204:-12.906,0,-32.1187 dDocent_Contig_4190 24 . A G 112.712 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=31;DPB=31;DPRA=0.695652;EPP=11.6962;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.481481;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=1057;RO=27;RPL=0;RPP=11.6962;RPPR=61.6401;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:4,4:4:160:4:158:-12.192,0,-12.3752 0/0:13:13,0:13:497:0:0:0,-3.91339,-45.0721 0/0:10:10,0:10:400:0:0:0,-3.0103,-36.3582 dDocent_Contig_4191 18 . A G 153.297 . AB=0.195122;ABP=36.112;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=107;DPB=107;DPRA=2.175;EPP=26.8965;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=437;QR=3806;RO=96;RPL=0;RPP=26.8965;RPPR=211.472;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:795:0:0:0,-6.0206,-71.8653 0/0:46:43,3:43:1705:3:120:0,-2.66007,-142.497 0/1:41:33,8:33:1306:8:317:-16.5516,0,-105.451 dDocent_Contig_4192 80 . G A 114.149 . AB=0.666667;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=19;DPB=19;DPRA=0.923077;EPP=11.6962;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=153;QR=527;RO=15;RPL=4;RPP=11.6962;RPPR=35.5824;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:2,4:2:67:4:153:-12.3354,0,-4.55635 0/0:5:5,0:5:165:0:0:0,-1.50515,-15.1732 0/0:8:8,0:8:295:0:0:0,-2.40824,-26.9033 dDocent_Contig_4193 13 . C A 4004.52 . AB=0.548387;ABP=6.16244;AC=4;AF=0.666667;AN=6;AO=140;CIGAR=2X;DP=215;DPB=215;DPRA=0;EPP=307.016;EPPR=131.127;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.992857;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5097;QR=2329;RO=59;RPL=0;RPP=307.016;RPPR=131.127;RPR=140;RUN=1;SAF=140;SAP=307.016;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:75:17,47,10:17:669:47,10:1712,409:-134.703,0,-40.8788,-106.061,-21.2681,-158.089 1|1:60:4,55,1:4:150:55,1:1983,40:-164.868,-4.29017,0,-162.777,-13.2566,-174.763 0|1:80:38,38,4:38:1510:38,4:1402,161:-103.199,0,-112.869,-101.366,-111.039,-224.489 dDocent_Contig_4194 32 . A T 43.5669 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=40;DPB=40;DPRA=0.424242;EPP=7.35324;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1417;RO=38;RPL=0;RPP=7.35324;RPPR=85.5263;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:706:0:0:0,-5.71957,-63.8668 0/1:7:5,2:5:193:2:81:-5.57852,0,-15.634 0/0:14:14,0:14:518:0:0:0,-4.21442,-46.9575 dDocent_Contig_4195 107 . N C 253.297 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=17;CIGAR=1X4M;DP=20;DPB=20;DPRA=0;EPP=39.9253;EPPR=0;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=0;NS=1;NUMALT=2;ODDS=10.4788;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=281;QR=0;RO=0;RPL=0;RPP=39.9253;RPPR=0;RPR=17;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:20:0,2,17:0:0:2,17:28,281:-25.3297,-23.4138,-22.8118,-5.11751,-3.15296,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_4196 131 . A T 38.2804 . AB=0.4;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=24;DPB=24;DPRA=1.5;EPP=9.52472;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=0.952381;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=698;RO=21;RPL=0;RPP=9.52472;RPPR=48.6112;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:12,1:12:394:1:35:0,-0.414761,-32.2768 0/1:5:3,2:3:104:2:69:-5.04751,0,-8.19794 0/0:6:6,0:6:200:0:0:0,-1.80618,-18.3272 dDocent_Contig_4198 7 . T A 377.229 . AB=0.25;ABP=26.8965;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X9M;DP=65;DPB=65;DPRA=0;EPP=26.8965;EPPR=44.2683;GTI=0;LEN=1;MEANALT=5.5;MQM=60;MQMR=60;NS=3;NUMALT=9;ODDS=0;PAIRED=0.818182;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=424;QR=735;RO=19;RPL=0;RPP=26.8965;RPPR=44.2683;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:24:7,3,0,3,0,2,2,0,0,7:7:274:3,0,3,0,2,2,0,0,7:119,0,110,0,71,78,0,0,269:-19.9789,-12.2908,-33.9219,-22.0862,-34.825,-44.6188,-13.0981,-25.8365,-35.6302,-34.7271,-22.0862,-34.825,-44.6188,-35.6302,-44.6188,-16.3053,-29.0436,-38.8372,-29.8492,-38.8372,-38.2351,-15.6731,-28.4124,-38.2065,-29.2181,-38.2065,-32.4251,-37.6044,-22.0862,-34.825,-44.6188,-35.6302,-44.6188,-38.8372,-38.2065,-44.6188,-22.0862,-34.825,-44.6188,-35.6302,-44.6188,-38.8372,-38.2065,-44.6188,-44.6188,0,-12.7403,-22.535,-13.5476,-22.535,-16.7546,-16.1224,-22.535,-22.535,-20.4278 0|1:21:7,3,3,1,2,0,0,0,4,0:7:266:3,3,1,2,0,0,0,4,0:116,102,39,74,0,0,0,150,0:-10.185,-2.75893,-23.6805,-4.84187,-17.13,-25.7553,-9.08418,-21.3762,-23.4518,-30.6051,-6.23721,-18.5292,-20.6057,-24.8522,-27.4572,-12.2922,-24.5835,-26.6584,-30.9062,-28.0593,-34.1132,-12.2922,-24.5835,-26.6584,-30.9062,-28.0593,-34.1132,-34.1132,-12.2922,-24.5835,-26.6584,-30.9062,-28.0593,-34.1132,-34.1132,-34.1132,0,-12.2937,-14.3722,-18.6172,-15.7704,-21.8246,-21.8246,-21.8246,-20.6205,-12.2922,-24.5835,-26.6584,-30.9062,-28.0593,-34.1132,-34.1132,-34.1132,-21.8246,-34.1132 0|1:20:5,4,0,0,1,2,0,3,0,4:5:195:4,0,0,1,2,0,3,0,4:150,0,0,39,78,0,115,0,155:-11.2308,-0.490486,-15.317,-12.736,-16.5211,-28.7671,-12.736,-16.5211,-28.7671,-28.7671,-9.52958,-13.315,-25.5609,-25.5609,-25.2599,-6.32308,-10.1089,-22.3547,-22.3547,-19.1485,-21.7527,-12.736,-16.5211,-28.7671,-28.7671,-25.5609,-22.3547,-28.7671,-3.29686,-7.08303,-19.3284,-19.3284,-16.1222,-12.9159,-19.3284,-18.4253,-12.736,-16.5211,-28.7671,-28.7671,-25.5609,-22.3547,-28.7671,-19.3284,-28.7671,0,-3.78677,-16.0322,-16.0322,-12.8259,-9.61949,-16.0322,-6.5933,-16.0322,-14.828 dDocent_Contig_4199 12 . A G 5890.02 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=1X3M1X12M1X1M1X3M1X;DP=261;DPB=261;DPRA=0;EPP=7.35324;EPPR=87.6977;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=2.77556e-17;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=1540;RO=39;RPL=0;RPP=7.35324;RPPR=87.6977;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:233:29,0,184,0,0:29:1142:0,184,0,0:0,7015,0,0:-566.693,-575.423,-669.373,0,-93.9581,-38.5686,-575.423,-669.373,-93.9581,-669.373,-575.423,-669.373,-93.9581,-669.373,-669.373 0|0:25:10,0,7,5,2:10:398:0,7,5,2:0,253,182,80:-17.6676,-20.6779,-53.4789,0,-32.8292,-30.722,-6.83989,-39.6517,-19.0029,-38.1466,-18.9716,-51.762,-31.1205,-37.9406,-51.1599 1|1:3:0,2,0,0,0:0:0:2,0,0,0:75,0,0,0:-6.9547,-0.60206,0,-6.9547,-0.60206,-6.9547,-6.9547,-0.60206,-6.9547,-6.9547,-6.9547,-0.60206,-6.9547,-6.9547,-6.9547 dDocent_Contig_4200 29 . T C 73.4909 . AB=0.333333;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=36;DPB=36;DPRA=0.666667;EPP=9.52472;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.3333;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.909091;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1288;RO=33;RPL=0;RPP=9.52472;RPPR=74.6689;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:687:0:0:0,-5.41854,-61.9958 0/0:9:9,0:9:364:0:0:0,-2.70927,-33.1248 0/1:9:6,3:6:237:3:121:-8.57093,0,-18.9931 dDocent_Contig_4201 107 . N G 185.913 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=196;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:65:-6.17345,-0.60206,0 1/1:4:0,4:0:0:4:131:-12.1142,-1.20412,0 dDocent_Contig_4202 32 . A T 75.7952 . AB=0.428571;ABP=3.32051;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=42;DPB=42;DPRA=0.4;EPP=9.52472;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=1557;RO=39;RPL=0;RPP=9.52472;RPPR=87.6977;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:558:0:0:0,-4.21442,-50.5626 0/1:7:4,3:4:161:3:117:-8.80137,0,-12.7683 0/0:21:21,0:21:838:0:0:0,-6.32163,-75.7345 dDocent_Contig_4203 11 . T C 452.722 . AB=0.21978;ABP=65.0762;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X4M;DP=91;DPB=91;DPRA=0;EPP=46.4397;EPPR=124.613;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.3;PAIREDR=0.642857;PAO=0;PQA=0;PQR=0;PRO=0;QA=799;QR=2183;RO=56;RPL=0;RPP=46.4397;RPPR=124.613;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:33:15,3,3,12:15:583:3,3,12:118,117,486:-35.5676,-30.3789,-77.3754,-30.4676,-68.6617,-77.4639,0,-38.198,-38.2866,-44.2918 0|1:42:28,3,3,6:28:1088:3,3,6:108,119,240:-11.3487,-10.9778,-99.4671,-9.9799,-90.5739,-98.4764,0,-80.5985,-79.6073,-87.5978 0|1:16:13,0,0,2:13:512:0,0,2:0,0,73:-2.0409,-5.95429,-48.0931,-5.95429,-48.0931,-48.0931,0,-42.1324,-42.1324,-41.5303 dDocent_Contig_4205 67 . G A 56.4466 . AB=0.272727;ABP=7.94546;AC=1;AF=0.25;AN=4;AO=3;CIGAR=1X;DP=22;DPB=22;DPRA=1;EPP=9.52472;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=111;QR=674;RO=19;RPL=3;RPP=9.52472;RPPR=44.2683;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:393:0:0:0,-3.31133,-35.7083 ./.:.:.:.:.:.:.:. 0/1:11:8,3:8:281:3:111:-7.04259,0,-22.3187 dDocent_Contig_4206 78 . C A 57.7806 . AB=0.230769;ABP=11.1951;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=23;DPB=23;DPRA=2.6;EPP=9.52472;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=763;RO=20;RPL=3;RPP=9.52472;RPPR=46.4397;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:340:0:0:0,-2.70927,-30.9545 0/1:13:10,3:10:385:3:117:-6.99699,0,-31.0932 0/0:1:1,0:1:38:0:0:0,-0.30103,-3.79727 dDocent_Contig_4208 24 . C T 263.061 . AB=0.5625;ABP=3.55317;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=22;DPB=22;DPRA=1.33333;EPP=22.5536;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=363;QR=513;RO=13;RPL=0;RPP=22.5536;RPPR=31.2394;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:6,7:6:236:7:282:-21.8392,0,-17.6986 0/1:3:1,2:1:40:2:81:-6.78264,0,-3.09259 0/0:6:6,0:6:237:0:0:0,-1.80618,-21.703 dDocent_Contig_4209 34 . T C 75.8819 . AB=0.151515;ABP=37.8197;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=68;DPB=68;DPRA=1.88571;EPP=13.8677;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=2480;RO=63;RPL=0;RPP=13.8677;RPPR=139.813;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:903:0:0:0,-6.92369,-81.5811 0/0:12:12,0:12:465:0:0:0,-3.61236,-42.1986 0/1:33:28,5:28:1112:5:204:-8.81004,0,-90.4298 dDocent_Contig_4210 10 . A G 3928.82 . AB=0.556017;ABP=9.57878;AC=3;AF=0.5;AN=6;AO=134;CIGAR=1M1X;DP=241;DPB=241;DPRA=0;EPP=293.988;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.925373;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5205;QR=4103;RO=107;RPL=0;RPP=293.988;RPPR=235.358;RPR=134;RUN=1;SAF=134;SAP=293.988;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:106:54,52:54:2058:52:2001:-148.39,0,-153.539 0|1:92:46,46:46:1774:46:1787:-133.366,0,-132.215 0|1:43:7,36:7:271:36:1417:-114.843,0,-11.8119 dDocent_Contig_4211 98 . N T 1175 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=40;CIGAR=1X;DP=40;DPB=40;DPRA=0;EPP=89.8692;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1290;QR=0;RO=0;RPL=40;RPP=89.8692;RPPR=0;RPR=0;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:158:-14.5323,-1.50515,0 1/1:11:0,11:0:0:11:343:-31.1731,-3.31133,0 1/1:24:0,24:0:0:24:789:-71.3172,-7.22472,0 dDocent_Contig_4212 69 . C T 77.3307 . AB=0.15625;ABP=35.8538;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=50;DPB=50;DPRA=0.888889;EPP=13.8677;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=1744;RO=45;RPL=5;RPP=13.8677;RPPR=100.727;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:11,1:11:430:1:38:-0.184909,0,-35.4405 0/1:20:16,4:16:610:4:162:-8.94615,0,-49.2031 0/0:18:18,0:18:704:0:0:0,-5.41854,-63.6859 dDocent_Contig_4213 29 . G T 55.6372 . AB=0.666667;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=27;DPB=27;DPRA=0.25;EPP=7.35324;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=987;RO=25;RPL=0;RPP=7.35324;RPPR=57.2971;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:596:0:0:0,-4.51545,-53.9783 0/0:9:9,0:9:351:0:0:0,-2.70927,-31.9467 0/1:3:1,2:1:40:2:81:-6.78264,0,-3.09259 dDocent_Contig_4214 7 . T G 35.6443 . AB=0.104651;ABP=119.765;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=122;DPB=122;DPRA=1.19444;EPP=22.5536;EPPR=239.778;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.973451;PAO=0;PQA=0;PQR=0;PRO=0;QA=333;QR=4277;RO=113;RPL=0;RPP=22.5536;RPPR=248.387;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=112;SRP=239.778;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:47,6:47:1791:6:223:-4.47302,0,-145.492 0/1:33:30,3:30:1141:3:110:-0.326428,0,-93.054 0/0:36:36,0:36:1345:0:0:0,-10.8371,-121.327 dDocent_Contig_4215 14 . G A 73.3789 . AB=0.104762;ABP=145.48;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=152;DPB=152;DPRA=1.11702;EPP=26.8965;EPPR=309.188;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0;PAIREDR=0.460993;PAO=0;PQA=0;PQR=0;PRO=0;QA=450;QR=5563;RO=141;RPL=0;RPP=26.8965;RPPR=309.188;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=141;SRP=309.188;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:47:47,0:47:1856:0:0:0,-14.1484,-167.26 0/1:61:55,6:55:2174:6:245:-4.06664,0,-177.477 0/1:44:39,5:39:1533:5:205:-5.58969,0,-124.972 dDocent_Contig_4216 89 . T C 277.128 . AB=0.413793;ABP=4.88226;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=40;DPB=40;DPRA=1.31818;EPP=29.068;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.928571;PAO=0;PQA=0;PQR=0;PRO=0;QA=423;QR=972;RO=28;RPL=12;RPP=29.068;RPPR=63.8115;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:385:0:0:0,-3.31133,-34.9857 0/1:11:7,4:7:237:4:143:-9.91012,0,-18.3494 0/1:18:10,8:10:350:8:280:-20.1215,0,-26.419 dDocent_Contig_4218 15 . G T 137.828 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=37;DPB=37;DPRA=0.740741;EPP=13.8677;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=196;QR=1226;RO=32;RPL=0;RPP=13.8677;RPPR=72.4974;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:343:0:0:0,-2.70927,-31.2266 0/1:10:5,5:5:186:5:196:-15.0046,0,-14.0898 0/0:18:18,0:18:697:0:0:0,-5.41854,-63.0589 dDocent_Contig_4219 64 . G A 227.58 . AB=0.30303;ABP=14.1309;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=81;DPB=81;DPRA=1.375;EPP=24.725;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=373;QR=2802;RO=71;RPL=10;RPP=24.725;RPPR=157.185;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:1105:0:0:0,-8.42884,-99.7365 0/0:20:20,0:20:789:0:0:0,-6.0206,-71.3282 0/1:33:23,10:23:908:10:373:-23.9798,0,-72.0926 dDocent_Contig_4220 71 . T C 39.7191 . AB=0.157895;ABP=22.325;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=37;DPB=37;DPRA=2.11111;EPP=9.52472;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=1265;RO=34;RPL=3;RPP=9.52472;RPPR=76.8404;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 0/1:19:16,3:16:603:3:117:-5.19081,0,-48.8868 0/0:17:17,0:17:623:0:0:0,-5.11751,-56.3907 dDocent_Contig_4221 26 . G A 271.508 . AB=0.133333;ABP=73.0765;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=3M1X;DP=60;DPB=60;DPRA=0;EPP=20.3821;EPPR=79.0118;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.771429;PAO=0;PQA=0;PQR=0;PRO=0;QA=320;QR=1379;RO=35;RPL=0;RPP=20.3821;RPPR=79.0118;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:15,0,4,4:15:589:0,4,4:0,159,160:-8.66554,-13.181,-61.6212,-0.0914715,-48.5299,-47.3257,0,-48.4403,-35.3486,-47.2362 0|0:13:10,0,1,1:10:398:0,1,1:0,40,38:-0.324683,-3.33498,-36.1664,0,-32.8696,-32.5686,-0.18849,-33.0499,-29.753,-32.7488 0|0:24:10,3,7,3:10:392:3,7,3:120,287,122:-20.6846,-13.8109,-45.1354,0,-22.3443,-30.1234,-13.6309,-35.9739,-22.1647,-44.9563 dDocent_Contig_4222 83 . A C 76.7608 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=33;DPB=33;DPRA=1.5625;EPP=13.8677;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=150;QR=921;RO=28;RPL=5;RPP=13.8677;RPPR=63.8115;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:4,4:4:138:4:119:-8.59682,0,-10.3522 0/0:17:16,1:16:529:1:31:0,-2.01806,-44.826 0/0:8:8,0:8:254:0:0:0,-2.40824,-23.1699 dDocent_Contig_4223 79 . C A 81.9565 . AB=0.153846;ABP=43.6001;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=90;DPB=90;DPRA=1.52941;EPP=16.0391;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=3224;RO=84;RPL=6;RPP=16.0391;RPPR=185.414;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:36:36,0:36:1409:0:0:0,-10.8371,-127.071 0/1:39:33,6:33:1239:6:231:-9.4175,0,-100.064 0/0:15:15,0:15:576:0:0:0,-4.51545,-52.1809 dDocent_Contig_4224 9 . T C 661.514 . AB=0.308642;ABP=28.7731;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X3M1X4M;DP=81;DPB=81;DPRA=0;EPP=57.2971;EPPR=70.3259;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=0.903226;PAO=0;PQA=0;PQR=0;PRO=0;QA=964;QR=1206;RO=31;RPL=0;RPP=57.2971;RPPR=70.3259;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:28:11,0,6,5,6:11:433:0,6,5,6:0,231,199,225:-15.6541,-18.9655,-54.5899,0,-35.6252,-33.819,-2.5742,-38.2018,-19.2367,-36.6967,-0.541485,-36.164,-17.2011,-19.7763,-34.3578 0|1:25:9,0,11,0,4:9:347:0,11,0,4:0,416,0,150:-31.3913,-34.1005,-62.5967,0,-28.4994,-25.1881,-34.1005,-62.5967,-28.4994,-62.5967,-21.8169,-50.3132,-16.2177,-50.3132,-49.1091 0|1:28:11,3,8,3,1:11:426:3,8,3,1:118,317,120,39:-22.7826,-16.3875,-50.4731,0,-25.2812,-32.5803,-16.2078,-41.4901,-25.1018,-50.2941,-22.8883,-48.1704,-31.7826,-47.9914,-57.5763 dDocent_Contig_4225 14 . T C 79.556 . AB=0.185185;ABP=26.2531;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=153;DPB=153;DPRA=0;EPP=26.8965;EPPR=311.359;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=427;QR=5361;RO=142;RPL=0;RPP=26.8965;RPPR=311.359;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=142;SRP=311.359;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:126:120,6:120:4547:6:231:0,-16.7728,-388.114 0/1:3:2,1:2:63:1:38:-2.89418,0,-5.07919 0/1:24:20,4:20:751:4:158:-7.37555,0,-60.6854 dDocent_Contig_4226 17 . A G 64.4855 . AB=0.114286;ABP=93.4676;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=202;DPB=202;DPRA=0;EPP=26.8965;EPPR=417.762;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9738;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.968586;PAO=0;PQA=0;PQR=0;PRO=0;QA=434;QR=7564;RO=191;RPL=0;RPP=26.8965;RPPR=417.762;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=191;SRP=417.762;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:70:62,8:62:2462:8:312:-7.36937,0,-200.666 0/0:65:63,2:63:2465:2:81:0,-11.8812,-214.324 0/0:67:66,1:66:2637:1:41:0,-16.0744,-233.352 dDocent_Contig_4227 11 . T C 42.0365 . AB=0.125;ABP=42.0968;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=66;DPB=66;DPRA=1.88235;EPP=11.6962;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=2487;RO=62;RPL=0;RPP=11.6962;RPPR=137.642;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:678:0:0:0,-5.11751,-61.3517 0/0:17:17,0:17:686:0:0:0,-5.11751,-62.0687 0/1:32:28,4:28:1123:4:163:-5.42547,0,-91.7203 dDocent_Contig_4228 11 . T C 63.0942 . AB=0.333333;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1M1D1M1X;DP=63;DPB=61;DPRA=0.8125;EPP=20.3821;EPPR=120.27;GTI=0;LEN=1;MEANALT=1.5;MQM=22.75;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=312;QR=2077;RO=54;RPL=0;RPP=20.3821;RPPR=120.27;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:21:18,2:18:674:2:73:0,-2.74269,-57.3267 0|0:24:24,0:24:932:0:0:0,-7.22472,-84.1954 0|1:18:12,6:12:471:6:239:-7.53126,0,-37.3234 dDocent_Contig_4229 125 . G A 127.047 . AB=0.212121;ABP=26.7649;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=42;DPB=42;DPRA=1.83333;EPP=18.2106;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=44.1143;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.685714;PAO=0;PQA=0;PQR=0;PRO=0;QA=269;QR=1330;RO=35;RPL=0;RPP=18.2106;RPPR=79.0118;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=79.0118;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:14,4:14:538:4:155:-8.9069,0,-35.461 0/1:15:12,3:12:446:3:114:-6.11653,0,-29.9951 0/0:9:9,0:9:346:0:0:0,-2.70927,-17.9361 dDocent_Contig_4230 9 . T C 286.117 . AB=0.25;ABP=16.0391;AC=2;AF=0.333334;AN=6;AO=6;CIGAR=1X1M3X2M1X4M3X5M;DP=79;DPB=79;DPRA=0;EPP=16.0391;EPPR=92.0407;GTI=0;LEN=1;MEANALT=3;MQM=35;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=210;QR=1608;RO=41;RPL=0;RPP=16.0391;RPPR=92.0407;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:24:15,0,0,2,6,0:15:589:0,0,2,6,0:0,0,79,210,0:-10.9085,-15.424,-63.8993,-15.424,-63.8993,-63.8993,-9.25649,-57.7411,-57.7411,-57.139,0,-48.4485,-48.4485,-42.2925,-46.6423,-15.424,-63.8993,-63.8993,-57.7411,-48.4485,-63.8993 0|1:18:10,3,0,4,0,1:10:386:3,0,4,0,1:116,0,132,0,22:-6.5726,-0.672523,-31.5401,-9.5829,-32.4432,-41.324,0,-22.8688,-31.7463,-30.5422,-9.5829,-32.4432,-41.324,-31.7463,-41.324,-8.1907,-31.0453,-39.9243,-30.3506,-39.9243,-39.6232 0|0:37:16,2,2,1,0,14:16:633:2,2,1,0,14:79,80,26,0,308:-14.8175,-13.6119,-65.1839,-15.0706,-61.2287,-66.6388,-17.8659,-64.0196,-65.4746,-69.7306,-19.634,-65.786,-67.2409,-70.0316,-71.798,0,-46.1311,-47.589,-50.3769,-52.1387,-47.9243 dDocent_Contig_4231 17 . A G 183.718 . AB=0.32;ABP=10.0459;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X;DP=25;DPB=25;DPRA=0;EPP=20.3821;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.125;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=316;QR=654;RO=17;RPL=0;RPP=20.3821;RPPR=39.9253;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:6,4:6:239:4:153:-11.1276,0,-18.8736 0/1:10:7,3:7:254:3:122:-8.36219,0,-20.1848 0/1:5:4,1:4:161:1:41:-2.58942,0,-13.3701 dDocent_Contig_4232 23 . C T 234.1 . AB=0.30303;ABP=14.1309;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=38;DPB=38;DPRA=3.3;EPP=24.725;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=388;QR=1106;RO=28;RPL=0;RPP=24.725;RPPR=63.8115;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:3,6:3:120:6:231:-18.4448,0,-8.47863 0/0:5:5,0:5:186:0:0:0,-1.50515,-17.0991 0/1:24:20,4:20:800:4:157:-7.28371,0,-65.0921 dDocent_Contig_4233 27 . A C 609.256 . AB=0.342857;ABP=18.0245;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=70;DPB=70;DPRA=0;EPP=55.1256;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=51.25;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=948;QR=1782;RO=46;RPL=0;RPP=55.1256;RPPR=102.898;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:25,11:25:977:11:437:-28.5732,0,-77.4002 0/1:13:4,9:4:151:9:349:-27.4764,0,-10.0438 0/1:21:17,4:17:654:4:162:-8.59272,0,-52.8726 dDocent_Contig_4234 30 . A T 87.4529 . AB=0.235294;ABP=13.3567;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=50;DPB=50;DPRA=1.0303;EPP=11.6962;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=1785;RO=46;RPL=0;RPP=11.6962;RPPR=102.898;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:13,4:13:510:4:160:-9.66608,0,-41.1226 0/0:8:8,0:8:320:0:0:0,-2.40824,-29.1673 0/0:25:25,0:25:955:0:0:0,-7.52575,-86.2413 dDocent_Contig_4235 14 . C A 2648.86 . AB=0.05;ABP=73.366;AC=0;AF=0;AN=6;AO=2;CIGAR=1X3M1D1X2M1X;DP=124;DPB=123.778;DPRA=0.97561;EPP=7.35324;EPPR=35.5824;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=602;RO=15;RPL=0;RPP=7.35324;RPPR=35.5824;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:41:2,0,0,0,3,33:2:81:0,0,0,3,33:0,0,0,105,1232:-103.479,-104.081,-110.762,-104.081,-110.762,-110.762,-104.081,-110.762,-110.762,-110.762,-95.5392,-102.22,-102.22,-102.22,-101.317,-3.23522,-9.93399,-9.93399,-9.93399,-1.38827,0 0|0:40:6,2,2,2,3,25:6:239:2,2,2,3,25:78,80,78,103,921:-73.4875,-68.8809,-87.9643,-68.7019,-81.975,-87.7854,-68.8809,-82.1539,-81.975,-87.9643,-66.9358,-80.2084,-80.0295,-80.2084,-85.7177,0,-13.2772,-13.0973,-13.2772,-11.3395,-12.1638 0|0:43:7,0,1,0,5,29:7:282:0,1,0,5,29:0,39,0,175,1125:-90.2376,-92.3448,-115.591,-89.1387,-112.385,-112.084,-92.3448,-115.591,-112.385,-115.591,-78.1112,-101.357,-98.1516,-101.357,-99.8523,0,-23.2647,-20.0581,-23.2647,-9.04332,-14.5348 dDocent_Contig_4236 19 . A G 112.036 . AB=0.0810811;ABP=59.4099;AC=0;AF=0;AN=6;AO=3;CIGAR=2X2M1X2M1X;DP=109;DPB=109;DPRA=0;EPP=9.52472;EPPR=176.728;GTI=0;LEN=1;MEANALT=4;MQM=34;MQMR=55.975;NS=3;NUMALT=7;ODDS=0;PAIRED=0;PAIREDR=0.7625;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=3171;RO=80;RPL=0;RPP=9.52472;RPPR=176.728;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:40:26,0,6,0,3,3,0,2:26:1024:0,6,0,3,3,0,2:0,241,0,122,117,0,71:-12.0445,-19.8712,-99.5274,0,-79.6638,-77.8576,-19.8712,-99.5274,-79.6638,-99.5274,-9.86131,-89.5204,-69.656,-89.5204,-88.6173,-10.8788,-90.5308,-70.667,-90.5308,-80.5237,-89.6277,-19.8712,-99.5274,-79.6638,-99.5274,-89.5204,-90.5308,-99.5274,-14.3771,-94.0276,-74.1641,-94.0276,-84.0206,-85.0312,-94.0276,-93.4255 0|0:32:28,0,0,0,0,3,0,1:28:1098:0,0,0,0,3,0,1:0,0,0,0,114,0,22:-0.235282,-8.66412,-99.0286,-8.66412,-99.0286,-99.0286,-8.66412,-99.0286,-99.0286,-99.0286,-8.66412,-99.0286,-99.0286,-99.0286,-99.0286,0,-90.4877,-90.4877,-90.4877,-90.4877,-89.5846,-8.66412,-99.0286,-99.0286,-99.0286,-99.0286,-90.4877,-99.0286,-7.29481,-97.6255,-97.6255,-97.6255,-97.6255,-89.0854,-97.6255,-97.3245 0|0:37:26,3,0,3,0,0,2,3:26:1049:3,0,3,0,0,2,3:118,0,109,0,0,79,99:-1.07169,-0.932659,-79.9146,-8.89847,-80.8177,-88.7853,0,-71.9275,-79.8948,-78.9917,-8.89847,-80.8177,-88.7853,-79.8948,-88.7853,-8.89847,-80.8177,-88.7853,-79.8948,-88.7853,-88.7853,-2.38621,-74.3154,-82.283,-73.3924,-82.283,-82.283,-81.681,-1.71987,-73.6299,-81.5966,-72.7067,-81.5966,-81.5966,-75.0946,-80.6936 dDocent_Contig_4237 54 . T G 250.603 . AB=0.45;ABP=3.44459;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=26;DPB=26;DPRA=1.66667;EPP=22.5536;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=362;QR=669;RO=17;RPL=9;RPP=22.5536;RPPR=39.9253;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:238:0:0:0,-1.80618,-21.7942 0/1:15:10,5:10:398:5:203:-14.1376,0,-31.6623 0/1:5:1,4:1:33:4:159:-13.1868,0,-1.79398 dDocent_Contig_4238 16 . C A 369.839 . AB=0.146067;ABP=196.686;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X;DP=178;DPB=178;DPRA=0;EPP=59.4686;EPPR=142.042;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.923077;PAIREDR=0.706667;PAO=0;PQA=0;PQR=0;PRO=0;QA=1036;QR=5868;RO=150;RPL=0;RPP=59.4686;RPPR=328.731;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=124;SRP=142.042;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:66:57,8:57:2226:8:322:-9.4699,0,-180.653 0/1:51:42,8:42:1614:8:320:-13.7781,0,-130.124 0/1:61:51,10:51:2028:10:394:-17.4525,0,-164.346 dDocent_Contig_4239 9 . T A 7099.9 . AB=0.389234;ABP=54.4827;AC=3;AF=0.5;AN=6;AO=188;CIGAR=1X2M1X1M;DP=483;DPB=483;DPRA=0;EPP=411.247;EPPR=226.672;GTI=0;LEN=1;MEANALT=7.33333;MQM=56.1649;MQMR=58.7184;NS=3;NUMALT=3;ODDS=0;PAIRED=0.771277;PAIREDR=0.61165;PAO=0;PQA=0;PQR=0;PRO=0;QA=7287;QR=4041;RO=103;RPL=0;RPP=411.247;RPPR=226.672;RPR=188;RUN=1;SAF=188;SAP=411.247;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:172:47,57,1,51:47:1855:57,1,51:2221,40,2004:-183.061,-15.7418,-147.663,-193.914,-161.527,-342.694,-32.3884,0,-178.175,-166.118 1|0:112:15,57,3,33:15:582:57,3,33:2181,119,1312:-233.222,-60.2053,-90.8619,-227.941,-98.2247,-274.856,-129.715,0,-167.738,-167.6 1|0:199:41,74,14,66:41:1604:74,14,66:2885,555,2645:-297.424,-80.7973,-189.97,-264.085,-166.566,-391.322,-97.5148,0,-183.286,-209.1 dDocent_Contig_4240 19 . C T 102.975 . AB=0.208333;ABP=20.744;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=85;DPB=85;DPRA=0.786885;EPP=13.8677;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.5;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.575;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=3177;RO=80;RPL=0;RPP=13.8677;RPPR=176.728;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:41,0:41:1624:0:0:0,-12.3422,-145.079 0/0:20:20,0:20:802:0:0:0,-6.0206,-72.4986 0/1:24:19,5:19:751:5:204:-11.5193,0,-60.6831 dDocent_Contig_4241 30 . G T 208.915 . AB=0.179104;ABP=62.9365;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1X;DP=129;DPB=129;DPRA=0;EPP=35.5824;EPPR=250.558;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=584;QR=4555;RO=114;RPL=0;RPP=35.5824;RPPR=250.558;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:24,1:24:957:1:39:0,-3.62919,-82.5373 0/0:37:35,2:35:1397:2:79:0,-3.64087,-118.49 0/1:67:55,12:55:2201:12:466:-22.1134,0,-178.083 dDocent_Contig_4242 40 . C A 887.527 . AB=0.525424;ABP=3.34154;AC=3;AF=0.5;AN=6;AO=31;CIGAR=1X;DP=59;DPB=59;DPRA=0;EPP=70.3259;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1213;QR=1120;RO=28;RPL=0;RPP=70.3259;RPPR=63.8115;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:7,4:7:275:4:151:-10.6466,0,-21.8072 0/1:12:5,7:5:200:7:277:-21.6874,0,-14.7672 0/1:36:16,20:16:645:20:785:-60.1354,0,-47.5467 dDocent_Contig_4243 10 . T C 7489.52 . AB=0.728435;ABP=144.878;AC=4;AF=0.666667;AN=6;AO=228;CIGAR=1X4M;DP=313;DPB=313;DPRA=0;EPP=498.106;EPPR=87.6977;GTI=0;LEN=1;MEANALT=2.33333;MQM=59.7412;MQMR=53.3846;NS=3;NUMALT=3;ODDS=0;PAIRED=0.758772;PAIREDR=0.615385;PAO=0;PQA=0;PQR=0;PRO=0;QA=9115;QR=1535;RO=39;RPL=0;RPP=498.106;RPPR=87.6977;RPR=228;RUN=1;SAF=228;SAP=498.106;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:118:13,8,16,81:13:512:8,16,81:321,633,3220:-275.059,-252.523,-288.338,-226.883,-238.655,-260.289,-13.8843,-25.6449,0,-27.7155 0|1:42:7,6,0,29:7:274:6,0,29:241,0,1159:-93.3478,-75.5953,-94.4176,-95.455,-96.2238,-116.084,0,-0.736416,-20.6143,-11.8844 0|1:153:19,16,0,118:19:749:16,0,118:628,0,4736:-384.235,-338.309,-395.012,-389.955,-399.829,-451.476,0,-9.87516,-61.522,-26.0005 dDocent_Contig_4244 35 . T C 173.087 . AB=0.0740741;ABP=45.5551;AC=0;AF=0;AN=6;AO=2;CIGAR=5M1X4M;DP=46;DPB=68;DPRA=0;EPP=7.35324;EPPR=74.6689;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=1271;RO=33;RPL=0;RPP=7.35324;RPPR=74.6689;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:3:1,2,0:1:36:2,0:80,0:-6.6887,0,-2.69518,-6.98973,-3.29724,-9.9139 0|0:27:19,5,2:19:719:5,2:181,75:-9.07176,0,-57.476,-8.63957,-52.8373,-67.0052 0|0:16:13,3,0:13:516:3,0:108,0:-5.25765,0,-41.9727,-9.17104,-42.8758,-51.6801 dDocent_Contig_4245 110 . T G 581.657 . AB=0.378378;ABP=12.5178;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X;DP=74;DPB=74;DPRA=0;EPP=63.8115;EPPR=100.727;GTI=0;LEN=1;MEANALT=1.33333;MQM=50.5357;MQMR=58.6444;NS=3;NUMALT=1;ODDS=0;PAIRED=0.428571;PAIREDR=0.777778;PAO=0;PQA=0;PQR=0;PRO=0;QA=953;QR=1494;RO=45;RPL=0;RPP=63.8115;RPPR=100.727;RPR=28;RUN=1;SAF=0;SAP=63.8115;SAR=28;SRF=0;SRP=100.727;SRR=45;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:20,12:20:676:12:408:-26.0709,0,-51.0902 0/1:17:11,6:11:352:6:201:-12.7338,0,-26.8157 0/1:24:14,10:14:466:10:344:-23.0777,0,-35.0349 dDocent_Contig_4247 20 . A G 88.2376 . AB=0.128405;ABP=311.25;AC=2;AF=0.333333;AN=6;AO=42;CIGAR=1X;DP=442;DPB=442;DPRA=0;EPP=77.6676;EPPR=817.862;GTI=0;LEN=1;MEANALT=2;MQM=31.4762;MQMR=56.2177;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.450633;PAO=0;PQA=0;PQR=0;PRO=0;QA=1517;QR=15646;RO=395;RPL=0;RPP=94.2121;RPPR=860.742;RPR=42;RUN=1;SAF=40;SAP=77.6676;SAR=2;SRF=390;SRP=817.862;SRR=5;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:120:104,14:104:4114:14:499:-2.014,0,-319.987 0/1:137:117,19:117:4658:19:694:-9.09482,0,-375.14 0/0:185:174,9:174:6874:9:324:0,-30.7213,-580.186 dDocent_Contig_4248 88 . C T 94.16 . AB=0.190476;ABP=37.9607;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X;DP=42;DPB=42;DPRA=0;EPP=20.3821;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=275;QR=1167;RO=34;RPL=8;RPP=20.3821;RPPR=76.8404;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:11,3:11:380:3:102:-5.30238,0,-30.3185 0/1:11:9,2:9:314:2:70:-3.33607,0,-25.2865 0/1:17:14,3:14:473:3:103:-4.49246,0,-37.7757 dDocent_Contig_4249 8 . C T 264.192 . 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AB=0.666667;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X1M1D1M;DP=16;DPB=15.5;DPRA=0.461538;EPP=7.35324;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=74;QR=530;RO=14;RPL=0;RPP=7.35324;RPPR=33.4109;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:8:8,0:8:304:0:0:0,-2.40824,-27.7201 0|0:5:5,0:5:188:0:0:0,-1.50515,-17.2845 0|1:3:1,2:1:38:2:74:-6.12279,0,-2.89418 dDocent_Contig_4251 8 . C T 109.018 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=19;DPB=19;DPRA=0.375;EPP=9.52472;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.77626e-21;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=605;RO=16;RPL=0;RPP=9.52472;RPPR=37.7539;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:293:0:0:0,-2.40824,-26.7184 1/1:3:0,3:0:0:3:115:-10.7249,-0.90309,0 0/0:8:8,0:8:312:0:0:0,-2.40824,-28.4449 dDocent_Contig_4252 112 . A T 907.811 . AB=0.654545;ABP=14.4204;AC=3;AF=0.5;AN=6;AO=36;CIGAR=1X;DP=55;DPB=55;DPRA=0;EPP=81.1833;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1223;QR=658;RO=19;RPL=0;RPP=81.1833;RPPR=44.2683;RPR=36;RUN=1;SAF=0;SAP=81.1833;SAR=36;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:8,6:8:274:6:204:-14.4793,0,-20.7795 0/1:33:6,27:6:209:27:916:-72.8168,0,-9.21706 0/1:8:5,3:5:175:3:103:-7.20173,0,-13.6855 dDocent_Contig_4253 13 . A G 115.174 . AB=0.175;ABP=39.7082;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=76;DPB=76;DPRA=0.555556;EPP=18.2106;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.3768;NS=3;NUMALT=1;ODDS=0;PAIRED=0.428571;PAIREDR=0.884058;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=2703;RO=69;RPL=0;RPP=18.2106;RPPR=152.842;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:14,4:14:539:4:162:-9.54842,0,-43.4277 0/1:22:19,3:19:753:3:117:-4.28755,0,-60.6956 0/0:36:36,0:36:1411:0:0:0,-10.8371,-127.113 dDocent_Contig_4254 154 . T G 205.604 . 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AB=0.666667;ABP=5.9056;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=36;DPB=36;DPRA=1;EPP=20.3821;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=280;QR=887;RO=28;RPL=8;RPP=20.3821;RPPR=63.8115;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:417:0:0:0,-3.91339,-37.8392 0/0:11:11,0:11:338:0:0:0,-3.31133,-30.7194 0/1:12:4,8:4:132:8:280:-21.9276,0,-8.59364 dDocent_Contig_4257 7 . T C 1147 . AB=0.101449;ABP=98.2089;AC=0;AF=0;AN=6;AO=7;CIGAR=2X;DP=91;DPB=91;DPRA=0;EPP=18.2106;EPPR=94.2121;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=265;QR=1599;RO=42;RPL=0;RPP=18.2106;RPPR=94.2121;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:22:16,0,6:16:613:0,6:0,222:-13.7124,-18.5289,-68.848,0,-50.6923,-48.8862 0|0:19:4,1,14:4:153:1,14:39,530:-42.2339,-40.2314,-52.4866,0,-9.34209,-8.33504 0|0:50:22,6,22:22:833:6,22:226,842:-62.4707,-50.5758,-117.058,0,-49.7739,-61.6697 dDocent_Contig_4258 51 . G C 763.277 . 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AB=0.242857;ABP=43.2136;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=70;DPB=70;DPRA=0;EPP=39.9253;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=642;QR=2089;RO=53;RPL=0;RPP=39.9253;RPPR=118.098;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:21,3:21:841:3:116:-3.59282,0,-68.7806 0/1:20:18,2:18:712:2:72:-0.815771,0,-58.3861 0/1:26:14,12:14:536:12:454:-33.3743,0,-40.7489 dDocent_Contig_4265 160 . C T 127.996 . AB=0.2;ABP=42.0968;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=103;DPB=103;DPRA=0.471698;EPP=24.725;EPPR=204.957;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=328;QR=2938;RO=93;RPL=10;RPP=24.725;RPPR=204.957;RPR=0;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=204.957;SRR=93;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:53:53,0:53:1617:0:0:0,-15.9546,-145.792 0/1:29:23,6:23:752:6:194:-9.04884,0,-59.2578 0/1:21:17,4:17:569:4:134:-6.06953,0,-45.2066 dDocent_Contig_4266 160 . T C 43.9766 . AB=0.176471;ABP=18.4661;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=28;DPB=28;DPRA=0.772727;EPP=9.52472;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=47;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=996;RO=25;RPL=3;RPP=9.52472;RPPR=57.2971;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:436:0:0:0,-3.31133,-38.8798 0/1:5:3,2:3:117:2:82:-5.61247,0,-9.22577 0/1:12:11,1:11:443:1:40:-0.0866319,0,-35.8046 dDocent_Contig_4267 9 . T C 438.433 . AB=0.111111;ABP=50.3001;AC=0;AF=0;AN=6;AO=4;CIGAR=3X5M1X6M;DP=63;DPB=61.6;DPRA=0;EPP=5.18177;EPPR=50.7827;GTI=0;LEN=1;MEANALT=4.5;MQM=22;MQMR=60;NS=3;NUMALT=7;ODDS=0;PAIRED=0;PAIREDR=0.909091;PAO=0;PQA=0;PQR=0;PRO=0;QA=88;QR=864;RO=22;RPL=0;RPP=11.6962;RPPR=50.7827;RPR=4;RUN=1;SAF=3;SAP=5.18177;SAR=1;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:27:12,0,0,2,2,0,3,6:12:469:0,0,2,2,0,3,6:0,0,44,57,0,119,241:-16.1192,-19.7316,-58.3153,-19.7316,-58.3153,-58.3153,-16.9349,-55.5102,-55.5102,-54.9082,-15.2125,-53.7949,-53.7949,-50.9914,-53.1928,-19.7316,-58.3153,-58.3153,-55.5102,-53.7949,-58.3153,-9.9195,-48.5145,-48.5145,-45.7108,-43.9944,-48.5145,-47.6114,0,-38.6163,-38.6163,-35.8142,-34.0965,-38.6163,-28.812,-36.8101 0|0:27:6,3,3,0,10,0,0,5:6:236:3,3,0,10,0,0,5:108,114,0,364,0,0,199:-27.8806,-21.6889,-40.2039,-20.3667,-31.7887,-38.8837,-29.6868,-41.107,-39.7868,-49.1058,0,-11.4271,-10.1025,-19.4207,-16.4104,-29.6868,-41.107,-39.7868,-49.1058,-19.4207,-49.1058,-29.6868,-41.107,-39.7868,-49.1058,-19.4207,-49.1058,-49.1058,-13.4127,-24.8371,-23.5153,-32.8352,-3.14862,-32.8352,-32.8352,-31.3301 0|0:9:4,0,0,2,0,2,0,0:4:159:0,0,2,0,2,0,0:0,0,44,0,65,0,0:-3.55743,-4.76155,-17.9348,-4.76155,-17.9348,-17.9348,-1.9578,-15.1461,-15.1461,-14.544,-4.76155,-17.9348,-17.9348,-15.1461,-17.9348,0,-13.2282,-13.2282,-10.4514,-13.2282,-12.6262,-4.76155,-17.9348,-17.9348,-15.1461,-17.9348,-13.2282,-17.9348,-4.76155,-17.9348,-17.9348,-15.1461,-17.9348,-13.2282,-17.9348,-17.9348 dDocent_Contig_4268 12 . C T 222.761 . AB=0.244898;ABP=30.7077;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=82;DPB=82;DPRA=2.9697;EPP=29.068;EPPR=122.255;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.871429;PAO=0;PQA=0;PQR=0;PRO=0;QA=418;QR=2795;RO=70;RPL=0;RPP=29.068;RPPR=155.013;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=66;SRP=122.255;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:37,12:37:1486:12:418:-23.1955,0,-119.237 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 0/0:31:31,0:31:1227:0:0:0,-9.33193,-110.702 dDocent_Contig_4269 10 . C T 46.612 . AB=0.333333;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=34;DPB=34;DPRA=0.714286;EPP=9.52472;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.4194;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.967742;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1209;RO=31;RPL=0;RPP=9.52472;RPPR=70.3259;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:543:0:0:0,-4.21442,-49.094 0/0:14:13,1:13:516:1:40:0,-0.218741,-42.6584 0/1:6:4,2:4:150:2:81:-5.87955,0,-12.0522 dDocent_Contig_4270 57 . T G 243.503 . AB=0.323529;ABP=12.2071;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=29.068;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=439;QR=2086;RO=56;RPL=12;RPP=29.068;RPPR=124.613;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:19,9:19:709:9:321:-20.7895,0,-55.7095 0/1:6:4,2:4:154:2:81:-5.87955,0,-12.4272 0/0:34:33,1:33:1223:1:37:0,-6.53719,-106.664 dDocent_Contig_4271 22 . A G 185.275 . AB=0.243243;ABP=24.1968;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=37;DPB=37;DPRA=0;EPP=22.5536;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=358;QR=1123;RO=28;RPL=0;RPP=22.5536;RPPR=63.8115;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:2:1,1:1:40:1:40:-3.39362,0,-3.39362 0/1:10:8,2:8:326:2:80:-4.58149,0,-26.6996 0/1:25:19,6:19:757:6:238:-14.266,0,-60.9242 dDocent_Contig_4272 7 . T C 34837.6 . AB=0.673116;ABP=258.634;AC=6;AF=1;AN=6;AO=1064;CIGAR=1X4M;DP=1522;DPB=1521.4;DPRA=0;EPP=2313.46;EPPR=165.871;GTI=0;LEN=1;MEANALT=13;MQM=59.9756;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.933271;PAIREDR=0.906667;PAO=0;PQA=0;PQR=0;PRO=0;QA=40409;QR=2845;RO=75;RPL=0;RPP=2313.46;RPPR=165.871;RPR=1064;RUN=1;SAF=1064;SAP=2313.46;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:540:19,30,403:19:719:30,403:1164,15238:-1305.71,-1215.79,-1265.7,-62.3751,-25.6737,0 1|1:460:18,48,321:18:683:48,321:1835,12134:-1083.73,-938.579,-980.136,-94.5671,0,-53.9422 1|1:522:38,49,340:38:1443:49,340:1903,13037:-1096.63,-951.695,-1055.28,-38.0445,0,-54.0249 dDocent_Contig_4273 8 . C T 45.8713 . AB=0.25;ABP=9.52472;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=38;DPB=38;DPRA=0.923077;EPP=9.52472;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.333333;PAIREDR=0.971429;PAO=0;PQA=0;PQR=0;PRO=0;QA=101;QR=1314;RO=35;RPL=0;RPP=9.52472;RPPR=79.0118;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:675:0:0:0,-5.41854,-61.0817 0/1:12:9,3:9:345:3:101:-5.80895,0,-27.7963 0/0:8:8,0:8:294:0:0:0,-2.40824,-26.809 dDocent_Contig_4274 10 . C G 184.102 . AB=0.28125;ABP=16.3106;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=32;DPB=32;DPRA=0;EPP=22.5536;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=50.3333;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.333333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=361;QR=921;RO=23;RPL=0;RPP=22.5536;RPPR=52.9542;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:13,3:13:516:3:123:-6.61881,0,-41.9705 0/1:8:5,3:5:203:3:116:-8.4093,0,-16.2446 0/1:8:5,3:5:202:3:122:-7.0988,0,-16.1538 dDocent_Contig_4275 11 . C A 1861.48 . AB=0.427746;ABP=10.8552;AC=3;AF=0.5;AN=6;AO=74;CIGAR=1X3M1X;DP=173;DPB=173;DPRA=0;EPP=163.699;EPPR=118.098;GTI=0;LEN=1;MEANALT=5.66667;MQM=45.027;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.459459;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2915;QR=2076;RO=53;RPL=0;RPP=163.699;RPPR=118.098;RPR=74;RUN=1;SAF=74;SAP=163.699;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:71:17,7,11,33:17:664:7,11,33:279,417,1303:-79.1802,-63.9516,-116.448,-54.8873,-89.1479,-106.18,0,-34.268,-25.2119,-44.6743 0|1:43:26,3,2,8:26:1015:3,2,8:120,77,317:-17.5138,-15.567,-98.1248,-19.0152,-92.7052,-101.871,0,-73.706,-77.1513,-81.0659 0|1:59:10,6,6,33:10:397:6,6,33:242,230,1295:-93.1708,-83.5779,-114.461,-77.3,-97.3893,-108.187,0,-20.1217,-13.8252,-22.7768 dDocent_Contig_4276 8 . C T 234.197 . AB=0.317073;ABP=14.9269;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=41;DPB=41;DPRA=0;EPP=16.5402;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=48.4615;MQMR=53.1786;NS=3;NUMALT=1;ODDS=0;PAIRED=0.846154;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=493;QR=1078;RO=28;RPL=0;RPP=31.2394;RPPR=63.8115;RPR=13;RUN=1;SAF=11;SAP=16.5402;SAR=2;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:11,5:11:420:5:187:-9.1465,0,-31.5747 0/1:15:9,6:9:349:6:228:-16.3691,0,-24.1655 0/1:10:8,2:8:309:2:78:-1.52411,0,-24.5295 dDocent_Contig_4278 17 . T A 2044.94 . AB=0.574257;ABP=7.84774;AC=4;AF=0.666667;AN=6;AO=58;CIGAR=1X3M;DP=101;DPB=120.25;DPRA=0;EPP=128.956;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2247;QR=1273;RO=32;RPL=0;RPP=128.956;RPPR=72.4974;RPR=58;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:26:1,11,14:1:41:11,14:436,538:-76.3451,-40.7524,-40.8269,-32.4908,0,-31.6616 0|1:27:13,0,14:13:513:0,14:0,546:-41.3529,-45.2663,-87.48,0,-42.6057,-38.3913 0|1:48:18,0,30:18:719:0,30:0,1163:-90.5127,-95.9312,-155.157,0,-59.6202,-50.5893 dDocent_Contig_4282 31 . A T 46.3961 . AB=0.166667;ABP=20.3821;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=2X;DP=63;DPB=63;DPRA=0.8;EPP=9.52472;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=2367;RO=60;RPL=0;RPP=9.52472;RPPR=133.299;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:26:26,0:26:1020:0:0:0,-7.82678,-92.0902 0|1:18:15,3:15:593:3:121:-5.86145,0,-48.2893 0|0:19:19,0:19:754:0:0:0,-5.71957,-68.1797 dDocent_Contig_4284 16 . G T 836.393 . AB=0.133333;ABP=20.5268;AC=0;AF=0;AN=6;AO=2;CIGAR=1X1M1X;DP=39;DPB=39;DPRA=1.25;EPP=7.35324;EPPR=26.8965;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=434;RO=11;RPL=0;RPP=7.35324;RPPR=26.8965;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=11;SRP=26.8965;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:12:5,0,7:5:199:0,7:0,280:-21.9594,-23.4646,-39.8496,0,-16.7834,-14.6762 0|0:12:0,0,12:0:0:0,12:0,476:-43.1912,-43.1912,-43.1912,-3.61236,-3.61236,0 0|0:15:6,2,7:6:235:2,7:79,275:-20.8074,-16.1125,-34.8327,0,-12.8188,-17.2131 dDocent_Contig_4285 10 . C A 250.541 . AB=0.0909091;ABP=130.93;AC=0;AF=0;AN=6;AO=16;CIGAR=1X4M;DP=196;DPB=197.6;DPRA=0;EPP=37.7539;EPPR=339.589;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=58.6581;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.967742;PAO=0;PQA=0;PQR=0;PRO=0;QA=623;QR=6066;RO=155;RPL=0;RPP=37.7539;RPPR=339.589;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=155;SRP=339.589;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:68:57,0,5,5:57:2240:0,5,5:0,197,194:0,-17.1587,-190.328,-0.949632,-174.119,-172.614,-1.22327,-174.388,-158.179,-172.883 0|0:40:32,2,3,3:32:1241:2,3,3:77,115,114:0,-3.30973,-104.667,-0.193543,-95.8304,-101.25,-0.287126,-95.9223,-92.806,-101.341 0|0:88:66,0,8,14:66:2585:0,8,14:0,311,560:-26.2684,-46.1363,-258.688,-20.5866,-233.135,-230.727,0,-212.558,-187.004,-208.343 dDocent_Contig_4286 43 . C A 88.508 . AB=0.238095;ABP=15.5221;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=36;DPB=36;DPRA=0.7;EPP=13.8677;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=186;QR=1175;RO=31;RPL=0;RPP=13.8677;RPPR=70.3259;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:5:2,3:2:79:3:111:-8.84808,0,-5.99248 0/0:15:15,0:15:559:0:0:0,-4.51545,-50.648 0/1:16:14,2:14:537:2:75:-2.30386,0,-43.8561 dDocent_Contig_4287 23 . C A 81.2733 . AB=0.25;ABP=11.6962;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=39;DPB=39;DPRA=1.3913;EPP=11.6962;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.971429;PAO=0;PQA=0;PQR=0;PRO=0;QA=150;QR=1408;RO=35;RPL=0;RPP=11.6962;RPPR=79.0118;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:12,4:12:481:4:150:-9.0481,0,-38.8248 0/0:7:7,0:7:276:0:0:0,-2.10721,-25.2092 0/0:16:16,0:16:651:0:0:0,-4.81648,-58.9229 dDocent_Contig_4288 3 . A T 160.959 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=1X2I1M1X;DP=5;DPB=8.33333;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=47;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=169;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:4:0,4:0:0:4:135:-12.4112,-1.20412,0 1|1:1:0,1:0:0:1:34:-3.37877,-0.30103,0 .:.:.:.:.:.:.:. dDocent_Contig_4290 10 . A G 173.103 . AB=0.388889;ABP=4.9405;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=29;DPB=29;DPRA=0.818182;EPP=18.2106;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.571429;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=270;QR=875;RO=22;RPL=0;RPP=18.2106;RPPR=50.7827;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:444:0:0:0,-3.31133,-40.3162 0/1:6:3,3:3:121:3:120:-9.38172,0,-9.47402 0/1:12:8,4:8:310:4:150:-10.2474,0,-24.647 dDocent_Contig_4291 179 . C T 49.4065 . AB=0.176471;ABP=18.4661;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=40;DPB=40;DPRA=1.47826;EPP=9.52472;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1433;RO=37;RPL=3;RPP=9.52472;RPPR=83.3548;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=83.3548;SRR=37;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:567:0:0:0,-4.51545,-51.3603 0/0:8:8,0:8:302:0:0:0,-2.40824,-27.533 0/1:17:14,3:14:564:3:121:-6.16248,0,-45.9859 dDocent_Contig_4292 8 . C T 139.506 . AB=0.205128;ABP=32.4644;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=66;DPB=66;DPRA=0.722222;EPP=20.3821;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=303;QR=2198;RO=58;RPL=0;RPP=20.3821;RPPR=128.956;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:20,3:20:764:3:116:-3.89401,0,-62.1634 0/0:27:27,0:27:1043:0:0:0,-8.12781,-94.1778 0/1:16:11,5:11:391:5:187:-12.3749,0,-30.702 dDocent_Contig_4293 11 . T G 267.459 . AB=0.318182;ABP=9.32731;AC=4;AF=0.666667;AN=6;AO=11;CIGAR=1X;DP=26;DPB=26;DPRA=0;EPP=26.8965;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=50.7273;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.727273;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=424;QR=596;RO=15;RPL=0;RPP=26.8965;RPPR=35.5824;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:155:-10.8195,-1.20412,0 0/1:10:7,3:7:283:3:119:-8.08509,0,-22.8333 0/1:12:8,4:8:313:4:150:-10.1597,0,-24.919 dDocent_Contig_4294 36 . A G 364.65 . AB=0.375;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X1M1X;DP=75;DPB=75;DPRA=0.941176;EPP=16.0391;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=226;QR=2300;RO=59;RPL=0;RPP=16.0391;RPPR=131.127;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:17:17,0,0:17:672:0,0:0,0:0,-5.11751,-60.8137,-5.11751,-60.8137,-60.8137 0|1:16:10,6,0:10:380:6,0:226,0:-15.8848,0,-29.7326,-18.8951,-31.5388,-50.0564 0|0:42:32,0,10:32:1248:0,10:0,391:-22.8989,-32.5319,-135.102,0,-102.961,-99.9504 dDocent_Contig_4295 13 . T C 204.736 . AB=0.4;ABP=4.74748;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=52;DPB=52;DPRA=1.25;EPP=20.3821;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=304;QR=1727;RO=44;RPL=0;RPP=20.3821;RPPR=98.5551;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:585:0:0:0,-4.51545,-52.9904 0/0:17:17,0:17:667:0:0:0,-5.11751,-60.3651 0/1:20:12,8:12:475:8:304:-21.6954,0,-37.0811 dDocent_Contig_4296 31 . A T 56.3665 . AB=0.2;ABP=14.7363;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=27;DPB=27;DPRA=2.5;EPP=9.52472;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.958333;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=946;RO=24;RPL=0;RPP=9.52472;RPPR=55.1256;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83432 0/1:15:12,3:12:471:3:122:-6.85704,0,-38.2237 0/0:10:10,0:10:403:0:0:0,-3.0103,-36.6304 dDocent_Contig_4297 22 . G A 37.6124 . AB=0.170455;ABP=86.0198;AC=2;AF=0.333333;AN=6;AO=24;CIGAR=1X;DP=177;DPB=177;DPRA=0;EPP=55.1256;EPPR=335.246;GTI=0;LEN=1;MEANALT=1;MQM=23.7917;MQMR=58.7516;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.496732;PAO=0;PQA=0;PQR=0;PRO=0;QA=919;QR=5863;RO=153;RPL=0;RPP=55.1256;RPPR=335.246;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=153;SRP=335.246;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:89:80,9:80:3056:9:344:0,-7.2393,-251.368 0/1:41:33,8:33:1257:8:313:-4.9596,0,-101.033 0/1:47:40,7:40:1550:7:262:-0.618667,0,-125.485 dDocent_Contig_4298 15 . T C 128.793 . AB=0.357143;ABP=5.49198;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=24;DPB=24;DPRA=2.8;EPP=13.8677;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=196;QR=769;RO=19;RPL=0;RPP=13.8677;RPPR=44.2683;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:9,5:9:362:5:196:-13.7986,0,-28.7292 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 0/0:8:8,0:8:325:0:0:0,-2.40824,-29.6194 dDocent_Contig_4299 11 . G A 669.238 . AB=0.458333;ABP=3.37221;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X2M2I5M;DP=63;DPB=70.75;DPRA=0;EPP=26.8965;EPPR=68.1545;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.933333;PAO=0;PQA=0;PQR=0;PRO=0;QA=427;QR=1184;RO=30;RPL=0;RPP=26.8965;RPPR=68.1545;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:25:13,0,2,10:13:513:0,2,10:0,80,358:-24.6924,-28.6057,-70.8347,-22.0076,-64.2426,-63.6406,0,-42.2064,-35.6155,-39.1961 0|1:24:8,11,0,5:8:318:11,0,5:427,0,179:-32.6965,0,-22.8951,-35.1048,-26.2065,-61.2931,-20.5334,-11.6408,-46.7193,-45.2142 0|0:14:9,0,0,5:9:353:0,0,5:0,0,190:-13.2516,-15.9609,-44.9991,-15.9609,-44.9991,-44.9991,0,-29.4223,-29.4223,-27.9172 dDocent_Contig_4300 10 . A G 181.9 . AB=0.178571;ABP=53.2644;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X;DP=203;DPB=203;DPRA=0;EPP=37.7539;EPPR=409.076;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.3125;PAIREDR=0.914439;PAO=0;PQA=0;PQR=0;PRO=0;QA=640;QR=7425;RO=187;RPL=0;RPP=37.7539;RPPR=409.076;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=187;SRP=409.076;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:55:51,4:51:2017:4:163:0,-1.49822,-166.671 0/1:56:46,10:46:1841:10:399:-19.4117,0,-149.045 0/0:92:90,2:90:3567:2:78:0,-20.292,-313.675 dDocent_Contig_4301 69 . C A 38.4881 . AB=0.222222;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=23;DPB=23;DPRA=1.28571;EPP=7.35324;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=836;RO=21;RPL=2;RPP=7.35324;RPPR=48.6112;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:364:0:0:0,-2.70927,-33.1244 0/0:5:5,0:5:204:0:0:0,-1.50515,-18.744 0/1:9:7,2:7:268:2:82:-5.07041,0,-21.7673 dDocent_Contig_4302 13 . G A 101.154 . AB=0.4;ABP=3.87889;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=30;DPB=30;DPRA=1;EPP=11.6962;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=152;QR=1048;RO=26;RPL=0;RPP=11.6962;RPPR=59.4686;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:6,4:6:244:4:152:-11.0362,0,-19.3285 0/0:7:7,0:7:280:0:0:0,-2.10721,-25.5712 0/0:13:13,0:13:524:0:0:0,-3.91339,-47.5064 dDocent_Contig_4303 8 . C T 71.4929 . AB=0.105263;ABP=28.7251;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X1M1X1M;DP=44;DPB=44;DPRA=1.35714;EPP=7.35324;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=1343;RO=35;RPL=0;RPP=7.35324;RPPR=79.0118;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:17,2,0,0:17:640:2,0,0:78,0,0:-1.6839,0,-52.2087,-6.80141,-52.8108,-59.224,-6.80141,-52.8108,-59.224,-59.224 0|0:11:6,0,2,3:6:238:0,2,3:0,81,116:-7.71102,-9.5172,-29.1107,-2.83077,-22.4295,-21.8274,0,-19.5859,-12.9047,-18.6828 0|0:14:12,0,1,1:12:465:0,1,1:0,39,41:0,-3.61236,-41.8929,-2.41133,-40.5919,-40.2909,-0.113382,-38.5061,-37.2061,-38.205 dDocent_Contig_4305 159 . C T 354.105 . AB=0.333333;ABP=13.8677;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=45;DPB=45;DPRA=0;EPP=35.5824;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=573;QR=1066;RO=30;RPL=15;RPP=35.5824;RPPR=68.1545;RPR=0;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:6,4:6:222:4:155:-11.3144,0,-17.3278 0/1:27:21,6:21:740:6:225:-12.4807,0,-58.7895 0/1:8:3,5:3:104:5:193:-15.3321,0,-7.29397 dDocent_Contig_4307 7 . T C 40.7445 . AB=0.25;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=42;DPB=42;DPRA=0.470588;EPP=7.35324;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=1521;RO=40;RPL=0;RPP=7.35324;RPPR=89.8692;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:6,2:6:224:2:78:-4.99523,0,-18.1116 0/0:19:19,0:19:721:0:0:0,-5.71957,-65.2211 0/0:15:15,0:15:576:0:0:0,-4.51545,-52.1814 dDocent_Contig_4308 10 . A G 314.451 . AB=0.166667;ABP=113.032;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=114;DPB=114;DPRA=0;EPP=44.2683;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=751;QR=3794;RO=95;RPL=0;RPP=44.2683;RPPR=209.3;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:26,11:26:1032:11:431:-28.0026,0,-82.037 0/1:35:32,3:32:1282:3:120:-0.65164,0,-105.109 0/1:42:37,5:37:1480:5:200:-5.73607,0,-120.804 dDocent_Contig_4310 25 . A G 43.567 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=33;DPB=33;DPRA=0.538462;EPP=7.35324;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1194;RO=31;RPL=0;RPP=7.35324;RPPR=70.3259;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:584:0:0:0,-4.51545,-52.8959 0/1:7:5,2:5:175:2:81:-5.57852,0,-13.9772 0/0:11:11,0:11:435:0:0:0,-3.31133,-39.504 dDocent_Contig_4311 12 . C T 136.848 . AB=0.157895;ABP=60.9543;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=57;DPB=57;DPRA=0;EPP=22.5536;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=364;QR=1872;RO=48;RPL=0;RPP=22.5536;RPPR=107.241;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:9,1:9:353:1:38:-0.786969,0,-29.1193 0/1:14:11,3:11:412:3:123:-7.25037,0,-33.1971 0/1:33:28,5:28:1107:5:203:-8.71907,0,-89.9774 dDocent_Contig_4312 28 . A G 244.035 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=42;DPB=42;DPRA=1.5;EPP=22.5536;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=341;QR=1243;RO=33;RPL=0;RPP=22.5536;RPPR=74.6689;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:559:0:0:0,-4.51545,-50.6458 0/0:9:9,0:9:337:0:0:0,-2.70927,-30.6819 0/1:18:9,9:9:347:9:341:-25.6253,0,-26.1686 dDocent_Contig_4313 9 . T C 1208.32 . AB=0.326087;ABP=27.1797;AC=5;AF=0.833333;AN=6;AO=30;CIGAR=1X7M;DP=92;DPB=92;DPRA=0;EPP=68.1545;EPPR=61.6401;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1150;QR=1036;RO=27;RPL=0;RPP=68.1545;RPPR=61.6401;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:42:8,0,2,15,17:8:301:0,2,15,17:0,78,577,654:-74.004,-76.4122,-101.072,-70.0002,-94.6603,-94.0583,-29.0396,-53.6988,-47.2865,-49.1834,-22.7173,-47.3762,-40.9638,0,-42.2587 1|1:19:3,1,0,6,9:3:116:1,0,6,9:40,0,231,340:-36.3945,-34.0013,-43.2294,-37.2976,-43.5304,-46.8265,-18.3287,-24.5617,-27.8583,-26.0521,-9.4361,-15.6676,-18.9641,0,-16.2548 0|1:31:16,3,2,6,4:16:619:3,2,6,4:114,78,231,156:-14.1499,-9.61973,-59.5604,-12.554,-54.0515,-62.7969,0,-41.497,-44.4322,-49.038,-6.14142,-47.6395,-50.5748,-38.0201,-55.7828 dDocent_Contig_4314 31 . C G 1345.7 . AB=0.597403;ABP=9.35551;AC=3;AF=0.5;AN=6;AO=46;CIGAR=1X;DP=77;DPB=77;DPRA=0;EPP=102.898;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1783;QR=1245;RO=31;RPL=0;RPP=102.898;RPPR=70.3259;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:17,25:17:679:25:987:-76.4839,0,-48.796 0/1:19:3,16:3:120:16:603:-48.8815,0,-5.46774 0/1:16:11,5:11:446:5:193:-12.9217,0,-35.6795 dDocent_Contig_4315 19 . T C 65.026 . AB=0.142857;ABP=41.7866;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=58;DPB=58;DPRA=0.76087;EPP=13.8677;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=2137;RO=53;RPL=0;RPP=13.8677;RPPR=118.098;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:23,2:23:924:2:82:-0.253928,0,-75.9378 0/1:10:7,3:7:278:3:115:-7.71418,0,-22.3799 0/0:23:23,0:23:935:0:0:0,-6.92369,-84.451 dDocent_Contig_4316 15 . A T 295.902 . AB=0.121849;ABP=298.623;AC=3;AF=0.5;AN=6;AO=29;CIGAR=1X;DP=238;DPB=238;DPRA=0;EPP=65.983;EPPR=410.125;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.743961;PAO=0;PQA=0;PQR=0;PRO=0;QA=1152;QR=8142;RO=207;RPL=0;RPP=65.983;RPPR=452.505;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=202;SRP=410.125;SRR=5;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:105:91,12:91:3598:12:485:-12.5913,0,-292.461 0/1:68:61,7:61:2380:7:270:-4.19401,0,-193.905 0/1:65:55,10:55:2164:10:397:-16.5213,0,-175.382 dDocent_Contig_4317 28 . G T 203.229 . AB=0.347826;ABP=7.63648;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=33;DPB=33;DPRA=1.15;EPP=20.3821;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=320;QR=1007;RO=25;RPL=0;RPP=20.3821;RPPR=57.2971;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:399:0:0:0,-3.0103,-36.2691 0/1:13:10,3:10:406:3:119:-7.18111,0,-32.9866 0/1:10:5,5:5:202:5:201:-15.4606,0,-15.5512 dDocent_Contig_4318 8 . C T 206.021 . AB=0.134328;ABP=158.643;AC=2;AF=0.333333;AN=6;AO=26;CIGAR=1X;DP=306;DPB=306;DPRA=0;EPP=36.4176;EPPR=336.882;GTI=0;LEN=1;MEANALT=1.66667;MQM=58.1154;MQMR=59.8478;NS=3;NUMALT=1;ODDS=0;PAIRED=0.307692;PAIREDR=0.521739;PAO=0;PQA=0;PQR=0;PRO=0;QA=999;QR=10583;RO=276;RPL=0;RPP=59.4686;RPPR=602.337;RPR=26;RUN=1;SAF=23;SAP=36.4176;SAR=3;SRF=241;SRP=336.882;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:172:161,8:161:6193:8:296:0,-24.25,-530.304 0/1:89:75,13:75:2866:13:512:-18.9088,0,-230.587 0/1:45:40,5:40:1524:5:191:-4.01175,0,-123.887 dDocent_Contig_4319 19 . T C 35418.9 . AB=0.433921;ABP=108.33;AC=2;AF=0.5;AN=4;AO=1205;CIGAR=1X1M;DP=2777;DPB=2777;DPRA=0;EPP=2619.63;EPPR=2760.84;GTI=0;LEN=1;MEANALT=4.5;MQM=59.8116;MQMR=58.9766;NS=2;NUMALT=2;ODDS=0;PAIRED=0.981743;PAIREDR=0.952418;PAO=0;PQA=0;PQR=0;PRO=0;QA=47766;QR=50556;RO=1282;RPL=0;RPP=2619.63;RPPR=2786.84;RPR=1205;RUN=1;SAF=1205;SAP=2619.63;SAR=0;SRF=1279;SRP=2760.84;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:2761:1272,240,1201:1272:50161:240,1201:9502,47603:-3533.94,-3135.17,-7167.5,0,-3322.9,-3743.04 .:.:.:.:.:.:.:. 0|1:16:10,2,4:10:395:2,4:80,163:-10.442,-6.86479,-38.7465,0,-25.8977,-31.2844 dDocent_Contig_4321 12 . T C 154.115 . AB=0.214286;ABP=22.8638;AC=2;AF=0.333334;AN=6;AO=6;CIGAR=1X1M;DP=29;DPB=29;DPRA=14;EPP=16.0391;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=779;RO=20;RPL=0;RPP=16.0391;RPPR=46.4397;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:11,0,4:11:427:0,4:0,158:-10.085,-13.3964,-48.4759,0,-35.4723,-34.2682 0|0:1:1,0,0:1:34:0,0:0,0:0,-0.30103,-3.39891,-0.30103,-3.39891,-3.39891 0|1:13:8,3,2:8:318:3,2:122,82:-7.63928,0,-25.2678,-3.27784,-19.4002,-28.8503 dDocent_Contig_4323 20 . A G 60.4257 . AB=0.235294;ABP=23.7032;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=45;DPB=45;DPRA=1.54545;EPP=20.3821;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=26;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=0.945946;PAO=0;PQA=0;PQR=0;PRO=0;QA=304;QR=1445;RO=37;RPL=0;RPP=20.3821;RPPR=83.3548;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:14,4:14:553:4:152:-5.14513,0,-44.6956 0/1:16:12,4:12:459:4:152:-3.21396,0,-36.8428 0/0:11:11,0:11:433:0:0:0,-3.31133,-39.3246 dDocent_Contig_4324 8 . C T 58.2032 . AB=0.272727;ABP=7.94546;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=44;DPB=44;DPRA=0.666667;EPP=9.52472;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.926829;PAO=0;PQA=0;PQR=0;PRO=0;QA=111;QR=1558;RO=41;RPL=0;RPP=9.52472;RPPR=92.0407;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:877:0:0:0,-6.92369,-79.2494 0/1:11:8,3:8:292:3:111:-7.04216,0,-23.3152 0/0:10:10,0:10:389:0:0:0,-3.0103,-35.3684 dDocent_Contig_4325 14 . G A 71.0902 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=1X;DP=27;DPB=27;DPRA=0.16;EPP=7.35324;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.77626e-21;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=73;QR=955;RO=25;RPL=0;RPP=7.35324;RPPR=57.2971;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:756:0:0:0,-6.0206,-68.3595 0/0:5:5,0:5:199:0:0:0,-1.50515,-18.2884 1/1:2:0,2:0:0:2:73:-6.9313,-0.60206,0 dDocent_Contig_4326 32 . G T 2738.85 . AB=0.0356394;ABP=1789.8;AC=1;AF=0.166667;AN=6;AO=34;CIGAR=1X1M1X3M1X3M1X1M12I7M;DP=954;DPB=1530;DPRA=0;EPP=76.8404;EPPR=48.6112;GTI=0;LEN=1;MEANALT=109.667;MQM=37.6176;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=1.5;PQA=58.5;PQR=58.5;PRO=1.5;QA=1242;QR=817;RO=21;RPL=0;RPP=76.8404;RPPR=48.6112;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:348:10,9,39,31:10:380:9,39,31:335,1066,952:-115.972,-93.7268,-122.185,-42.7648,-48.6768,-62.1925,-45.0497,-50.9618,0,-66.8858 0|0:252:3,7,23,17:3:119:7,23,17:241,618,558:-76.6785,-59.5483,-67.2391,-33.5867,-25.3513,-36.4611,-34.1972,-25.9618,0,-38.8779 1|0:354:8,18,34,11:8:318:18,34,11:666,875,383:-84.9507,-36.8878,-57.6548,-24.2857,0,-40.2363,-57.4088,-33.1231,-20.5211,-80.2829 dDocent_Contig_4327 10 . G T 358.363 . AB=0.218391;ABP=62.9379;AC=1;AF=0.166667;AN=6;AO=22;CIGAR=1X;DP=270;DPB=270;DPRA=0.69469;EPP=50.7827;EPPR=324.866;GTI=0;LEN=1;MEANALT=1.5;MQM=50.4091;MQMR=38.1577;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=0;PAIREDR=0.182573;PAO=0;PQA=0;PQR=0;PRO=0;QA=837;QR=9478;RO=241;RPL=0;RPP=50.7827;RPPR=526.335;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=215;SRP=324.866;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:113:108,0:108:4225:0:0:0,-32.5112,-275.925 0/0:70:67,3:67:2632:3:109:0,-10.9052,-174.688 0/1:87:66,19:66:2621:19:728:-37.0581,0,-180.604 dDocent_Contig_4328 18 . G A 714.331 . AB=0;ABP=0;AC=0;AF=0;AN=6;AO=18;CIGAR=2M1X3M1X;DP=150;DPB=227.286;DPRA=1.84375;EPP=42.0968;EPPR=0;GTI=0;LEN=1;MEANALT=3.5;MQM=7;MQMR=0;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=5120;PRO=140;QA=693;QR=0;RO=0;RPL=0;RPP=42.0968;RPPR=0;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:59:0,12,11,35:0:0:12,11,35:462,169,1388:-21.8879,-17.9715,-14.3592,-12.6926,-8.78843,-9.38125,-10.5361,-6.85487,-1.50348,0 0|0:59:0,6,4,49:0:0:6,4,49:231,84,1882:-33.0827,-31.1195,-29.3133,-27.3982,-25.4354,-26.1941,-14.7505,-13.4363,-9.28059,0 0|0:32:0,0,3,29:0:0:0,3,29:0,21,1135:-15.8604,-15.8604,-15.8604,-15.5892,-15.5892,-14.6862,-8.72987,-8.72987,-13.3214,0 dDocent_Contig_4329 25 . G A 354.832 . AB=0.169811;ABP=53.2;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=4M1X6M;DP=53;DPB=40.6364;DPRA=0;EPP=22.5536;EPPR=61.6401;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=353;QR=1046;RO=27;RPL=0;RPP=22.5536;RPPR=61.6401;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:24:9,2,8,4:9:352:2,8,4:78,279,151:-19.9834,-16.2741,-44.635,0,-22.5547,-26.5611,-10.3067,-32.8588,-16.5923,-38.0698 0|0:12:7,0,4,1:7:273:0,4,1:0,139,40:-9.1496,-11.2568,-33.7157,0,-22.4316,-21.2275,-7.95127,-30.4185,-19.1353,-30.1175 0|1:17:11,0,2,4:11:421:0,2,4:0,75,162:-10.0669,-13.3782,-47.9129,-7.2453,-41.7717,-41.1697,0,-34.5491,-28.4075,-33.345 dDocent_Contig_4330 9 . G C 477.397 . AB=0.485714;ABP=3.07234;AC=1;AF=0.166667;AN=6;AO=17;CIGAR=1X;DP=65;DPB=65;DPRA=2.33333;EPP=39.9253;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=654;QR=1815;RO=48;RPL=0;RPP=39.9253;RPPR=107.241;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:18,17:18:679:17:654:-48.6605,0,-50.9052 0/0:20:20,0:20:746:0:0:0,-6.0206,-67.4652 0/0:10:10,0:10:390:0:0:0,-3.0103,-35.4587 dDocent_Contig_4331 192 . A T 807.892 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=24;CIGAR=1X;DP=62;DPB=62;DPRA=2.08333;EPP=55.1256;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=970;QR=1484;RO=38;RPL=24;RPP=55.1256;RPPR=85.5263;RPR=0;RUN=1;SAF=0;SAP=55.1256;SAR=24;SRF=0;SRP=85.5263;SRR=38;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:25,1:25:983:1:41:0,-3.73221,-84.6747 0/0:12:12,0:12:468:0:0:0,-3.61236,-42.4683 1/1:24:1,23:1:33:23:929:-80.6131,-3.92559,0 dDocent_Contig_4332 7 . T C 1050.42 . AB=0.205479;ABP=113.012;AC=1;AF=0.166667;AN=6;AO=30;CIGAR=1X1M;DP=146;DPB=146;DPRA=0;EPP=68.1545;EPPR=152.842;GTI=0;LEN=1;MEANALT=3;MQM=58.7667;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.985507;PAO=0;PQA=0;PQR=0;PRO=0;QA=1131;QR=2612;RO=69;RPL=0;RPP=68.1545;RPPR=152.842;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:54:34,9,1,10:34:1293:9,1,10:331,39,377:-20.6591,-5.48539,-108.826,-27.6869,-108.329,-133.445,0,-80.6544,-102.864,-103.06 0|0:26:8,0,10,8:8:307:0,10,8:0,386,302:-29.2977,-31.706,-56.9065,0,-25.2032,-22.1929,-6.96823,-32.1673,-0.464871,-29.7591 0|0:66:27,5,21,12:27:1012:5,21,12:194,814,452:-58.7545,-50.956,-132.333,0,-66.958,-76.5634,-29.8547,-96.8086,-45.8546,-109.123 dDocent_Contig_4333 125 . T A 68.1449 . AB=0.25;ABP=11.6962;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=75;DPB=75;DPRA=1.28571;EPP=18.2106;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=2206;RO=67;RPL=0;RPP=18.2106;RPPR=148.499;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=148.499;SRR=67;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:35,3:35:1172:3:105:0,-1.64298,-95.9863 0/0:21:20,0:20:627:0:0:0,-6.0206,-56.4546 0/1:16:12,4:12:407:4:139:-8.03621,0,-32.1396 dDocent_Contig_4334 55 . T A 139.488 . AB=0.310345;ABP=12.0706;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=34;DPB=34;DPRA=2.9;EPP=22.5536;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=270;QR=835;RO=25;RPL=9;RPP=22.5536;RPPR=57.2971;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:6,7:6:204:7:202:-14.5503,0,-14.7801 0/1:16:14,2:14:472:2:68:-1.64145,0,-37.987 0/0:5:5,0:5:159:0:0:0,-1.50515,-14.6234 dDocent_Contig_4335 107 . N G 61.77 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=65;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:65:-6.17268,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_4336 8 . C T 185.983 . AB=0.307692;ABP=11.3621;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=35;DPB=35;DPRA=1.44444;EPP=20.3821;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=311;QR=1048;RO=27;RPL=0;RPP=20.3821;RPPR=61.6401;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:9,6:9:346:6:233:-16.8246,0,-26.9838 0/1:11:9,2:9:351:2:78:-4.09214,0,-28.6405 0/0:9:9,0:9:351:0:0:0,-2.70927,-31.9518 dDocent_Contig_4337 9 . G A 66.9985 . AB=0.170732;ABP=41.6201;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X;DP=165;DPB=165;DPRA=0;EPP=37.7539;EPPR=326.56;GTI=0;LEN=1;MEANALT=1;MQM=35.25;MQMR=47.3087;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.973154;PAO=0;PQA=0;PQR=0;PRO=0;QA=614;QR=5625;RO=149;RPL=0;RPP=37.7539;RPPR=326.56;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=149;SRP=326.56;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:49:48,1:48:1809:1:37:0,-12.0918,-144.891 0/0:75:67,8:67:2525:8:309:0,-2.04746,-184.761 0/1:41:34,7:34:1291:7:268:-7.92165,0,-93.9768 dDocent_Contig_4339 42 . G A 230.097 . AB=0.428571;ABP=3.94093;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=24;DPB=24;DPRA=3.5;EPP=22.5536;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=42;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.933333;PAO=0;PQA=0;PQR=0;PRO=0;QA=362;QR=587;RO=15;RPL=9;RPP=22.5536;RPPR=35.5824;RPR=0;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:7,1:7:266:1:41:-1.43787,0,-21.8878 0/1:13:5,8:5:201:8:321:-23.7747,0,-14.5571 0/0:3:3,0:3:120:0:0:0,-0.90309,-11.1873 dDocent_Contig_4340 135 . A G 31.2556 . AB=0.159091;ABP=47.4268;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X;DP=44;DPB=44;DPRA=0;EPP=18.2106;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=37.5714;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=221;QR=1096;RO=37;RPL=0;RPP=18.2106;RPPR=83.3548;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=83.3548;SRR=37;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:21,4:21:619:4:136:-3.83042,0,-48.4673 0/1:11:9,2:9:268:2:51:-1.50113,0,-21.1021 0/1:8:7,1:7:209:1:34:-0.37256,0,-16.6959 dDocent_Contig_4341 8 . C A 118.248 . AB=0.120968;ABP=157.745;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=148;DPB=148;DPRA=2.58333;EPP=35.5824;EPPR=291.816;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=564;QR=5097;RO=133;RPL=0;RPP=35.5824;RPPR=291.816;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=133;SRP=291.816;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:60:53,7:53:2023:7:255:-5.23649,0,-164.246 0/0:24:24,0:24:909:0:0:0,-7.22472,-82.1243 0/1:64:56,8:56:2165:8:309:-8.90705,0,-175.807 dDocent_Contig_4342 107 . N A 100.491 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=2X2M1X1M1X2M1X3M1I1M1X;DP=6;DPB=6.93333;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=27.25;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=3;PQA=86;PQR=221;PRO=7;QA=155;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,2:0:0:2:77:-4.41435,-0.60206,0 .:.:.:.:.:.:.:. 1|1:3:0,2:0:0:2:78:-5.32937,-0.60206,0 dDocent_Contig_4343 82 . C A 102.854 . AB=0.230769;ABP=19.3799;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=44;DPB=44;DPRA=2.88889;EPP=16.0391;EPPR=83.3548;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=206;QR=1277;RO=37;RPL=6;RPP=16.0391;RPPR=83.3548;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:19,6:19:660:6:206:-11.2062,0,-52.0775 0/0:7:7,0:7:242:0:0:0,-2.10721,-22.1176 0/0:11:11,0:11:375:0:0:0,-3.31133,-34.0792 dDocent_Contig_4344 203 . G A 85.3158 . AB=0.230769;ABP=19.3799;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=32;DPB=32;DPRA=2.16667;EPP=16.0391;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=946;RO=26;RPL=6;RPP=16.0391;RPPR=59.4686;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:9,4:9:325:4:128:-7.9227,0,-25.6828 0/1:13:11,2:11:401:2:72:-2.92325,0,-32.5216 0/0:6:6,0:6:220:0:0:0,-1.80618,-20.1555 dDocent_Contig_4345 7 . T C 559.833 . AB=0.276316;ABP=36.0395;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X5M;DP=76;DPB=76;DPRA=0;EPP=48.6112;EPPR=76.8404;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=785;QR=1283;RO=34;RPL=0;RPP=48.6112;RPPR=76.8404;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:38:19,0,9,10:19:715:0,9,10:0,335,370:-24.5511,-30.2707,-88.8573,-3.34805,-61.9347,-59.2254,0,-58.5894,-31.6682,-55.5791 0|1:17:7,2,5,3:7:264:2,5,3:51,186,117:-13.175,-14.9761,-36.0086,0,-21.3896,-20.201,-5.63199,-26.99,-12.0673,-26.4121 0|1:21:8,0,4,8:8:304:0,4,8:0,156,298:-21.9738,-24.382,-49.3121,-11.5538,-36.4862,-35.2821,0,-24.9237,-12.0974,-22.5154 dDocent_Contig_4346 7 . T C 851.871 . AB=0.455882;ABP=4.1599;AC=3;AF=0.5;AN=6;AO=31;CIGAR=1X7M;DP=68;DPB=68.5;DPRA=0;EPP=70.3259;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1195;QR=1244;RO=32;RPL=0;RPP=70.3259;RPPR=72.4974;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:30:14,0,16:14:536:0,16:0,612:-46.3878,-50.6022,-94.5887,0,-44.3688,-39.5523 0|1:10:5,0,4:5:196:0,4:0,155:-11.2398,-12.745,-28.8668,0,-16.1333,-14.9292 0|1:28:13,4,11:13:512:4,11:154,428:-31.2761,-23.1028,-64.0234,0,-30.0544,-38.8292 dDocent_Contig_4348 9 . C T 264.232 . AB=0.222222;ABP=45.2334;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=63;DPB=63;DPRA=0;EPP=33.4109;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=54.8571;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=533;QR=1881;RO=49;RPL=0;RPP=33.4109;RPPR=109.412;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:12,6:12:467:6:225:-15.1912,0,-36.8233 0/1:17:15,2:15:565:2:75:-2.00283,0,-45.6672 0/1:28:22,6:22:849:6:233:-12.9112,0,-67.6602 dDocent_Contig_4349 9 . C T 150.918 . AB=0.352941;ABP=6.20364;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=33;DPB=33;DPRA=2.125;EPP=16.0391;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=1043;RO=27;RPL=0;RPP=16.0391;RPPR=61.6401;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:388:0:0:0,-3.0103,-35.2779 0/0:6:6,0:6:230:0:0:0,-1.80618,-21.0663 0/1:17:11,6:11:425:6:234:-16.3136,0,-33.4864 dDocent_Contig_4350 9 . C T 60.5534 . AB=0.181818;ABP=22.3561;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X2M2I2M1X3M1X2M1X3M3I1X3M1D1M;DP=66;DPB=66.7273;DPRA=1;EPP=11.6962;EPPR=133.299;GTI=0;LEN=1;MEANALT=2;MQM=53;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.983333;PAO=0;PQA=0;PQR=0;PRO=0;QA=150;QR=2376;RO=60;RPL=0;RPP=11.6962;RPPR=133.299;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:29:29,0:29:1143:0:0:0,-8.72987,-103.161 0|1:22:17,4:17:676:4:150:-7.27719,0,-54.6606 0|0:15:14,0:14:557:0:0:0,-4.21442,-50.1131 dDocent_Contig_4351 11 . T C 3716 . AB=0.748428;ABP=88.244;AC=3;AF=0.5;AN=6;AO=119;CIGAR=1X;DP=159;DPB=159;DPRA=0;EPP=261.416;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.991597;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4694;QR=1554;RO=40;RPL=0;RPP=261.416;RPPR=89.8692;RPR=119;RUN=1;SAF=119;SAP=261.416;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:76:18,58:18:690:58:2265:-181.147,0,-39.5366 0/1:15:2,13:2:75:13:503:-41.0965,0,-2.60465 0/1:68:20,48:20:789:48:1926:-153.065,0,-50.8544 dDocent_Contig_4352 8 . C T 718.253 . AB=0.0869565;ABP=37.093;AC=0;AF=0;AN=6;AO=2;CIGAR=2X2M1X;DP=82;DPB=82;DPRA=0;EPP=7.35324;EPPR=89.8692;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=1544;RO=40;RPL=0;RPP=7.35324;RPPR=89.8692;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:23:4,0,7,2,10,0:4:156:0,7,2,10,0:0,273,77,383,0:-39.8394,-41.0435,-53.8678,-18.6001,-31.4253,-29.318,-34.7212,-47.5455,-25.1029,-46.9434,-9.61802,-22.4419,0,-16.1202,-19.4316,-41.0435,-53.8678,-31.4253,-47.5455,-22.4419,-53.8678 0|0:25:15,0,0,0,5,5:15:574:0,0,0,5,5:0,0,0,198,204:-12.3219,-16.8373,-63.93,-16.8373,-63.93,-63.93,-16.8373,-63.93,-63.93,-63.93,-0.546445,-47.6318,-47.6318,-47.6318,-46.1267,0,-47.0943,-47.0943,-47.0943,-30.7941,-45.5891 0|0:34:21,2,2,0,9,0:21:814:2,2,0,9,0:78,76,0,360,0:-23.3415,-23.2523,-89.5212,-23.433,-83.891,-89.7007,-29.6631,-90.1232,-90.3027,-96.535,0,-60.4668,-60.6465,-66.8788,-64.1695,-29.6631,-90.1232,-90.3027,-96.535,-66.8788,-96.535 dDocent_Contig_4353 19 . C A 108.865 . AB=0.206897;ABP=24.6501;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=40;DPB=40;DPRA=1.31818;EPP=16.0391;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=235;QR=1343;RO=34;RPL=0;RPP=16.0391;RPPR=76.8404;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:16,2:16:633:2:82:-2.36114,0,-51.884 0/0:11:11,0:11:434:0:0:0,-3.31133,-39.4111 0/1:11:7,4:7:276:4:153:-10.8286,0,-21.8944 dDocent_Contig_4354 8 . C T 868.977 . 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G T 142.112 . AB=0.416667;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=24;DPB=24;DPRA=2;EPP=13.8677;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=754;RO=19;RPL=0;RPP=13.8677;RPPR=44.2683;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:7,5:7:277:5:204:-15.1317,0,-21.6874 0/0:8:8,0:8:323:0:0:0,-2.40824,-29.4381 0/0:4:4,0:4:154:0:0:0,-1.20412,-14.2322 dDocent_Contig_4357 40 . A G 39.528 . AB=0.222222;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X2M1X11M;DP=38;DPB=38;DPRA=0.818182;EPP=7.35324;EPPR=70.3259;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=1208;RO=31;RPL=0;RPP=7.35324;RPPR=70.3259;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:9:5,2,1:5:199:2,1:77,39:-4.81476,0,-15.7898,-3.1132,-13.1869,-19.2054 0|0:11:11,0,0:11:419:0,0:0,0:0,-3.31133,-38.058,-3.31133,-38.058,-38.058 0|0:18:15,0,2:15:590:0,2:0,79:-1.03566,-5.55111,-54.1097,0,-48.527,-47.9249 dDocent_Contig_4358 77 . T C 33.1855 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=84;DPB=84;DPRA=0.181818;EPP=7.35324;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.682927;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=2675;RO=82;RPL=1;RPP=3.0103;RPPR=8.20065;RPR=1;RUN=1;SAF=1;SAP=3.0103;SAR=1;SRF=48;SRP=8.20065;SRR=34;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:49:49,0:49:1565:0:0:0,-14.7505,-141.131 0/0:28:28,0:28:950:0:0:0,-8.42884,-85.8104 0/1:7:5,2:5:160:2:70:-4.54019,0,-12.6084 dDocent_Contig_4359 21 . A T 48.2441 . AB=0.166667;ABP=20.3821;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=71;DPB=71;DPRA=0.679245;EPP=9.52472;EPPR=142.112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.1765;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.970588;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=2702;RO=68;RPL=0;RPP=9.52472;RPPR=150.67;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=67;SRP=142.112;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:552:0:0:0,-4.21442,-50.0219 0/0:39:39,0:39:1543:0:0:0,-11.7402,-137.786 0/1:18:15,3:15:607:3:123:-6.04625,0,-49.5486 dDocent_Contig_4360 17 . G A 390.24 . AB=0.215909;ABP=64.6999;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=88;DPB=88;DPRA=0;EPP=44.2683;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=59.1579;MQMR=56.1159;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.84058;PAO=0;PQA=0;PQR=0;PRO=0;QA=757;QR=2734;RO=69;RPL=0;RPP=44.2683;RPPR=152.842;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:21,12:21:827:12:477:-33.3436,0,-64.1574 0/1:29:26,3:26:1042:3:120:-2.43259,0,-75.2023 0/1:26:22,4:22:865:4:160:-6.95142,0,-70.3026 dDocent_Contig_4361 1 . N G 66.4611 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X3M1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=55;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:70:-6.64179,-0.60206,0 .:.:.:.:.:.:.:. dDocent_Contig_4362 11 . C T 4881.09 . AB=0.030837;ABP=871.006;AC=0;AF=0;AN=6;AO=14;CIGAR=1X3M1X;DP=657;DPB=664.6;DPRA=0;EPP=33.4109;EPPR=504.62;GTI=0;LEN=1;MEANALT=11.5;MQM=60;MQMR=56.1039;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.246753;PAO=0;PQA=0;PQR=0;PRO=0;QA=541;QR=8840;RO=231;RPL=0;RPP=33.4109;RPPR=504.62;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=231;SRP=504.62;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:247:75,3,66,79:75:2871:3,66,79:115,2470,2787:-198.809,-211.947,-444.818,-20.9649,-245.305,-234.877,0,-224.333,-33.3607,-209.991 0|0:203:86,0,57,42:86:3304:0,57,42:0,2087,1396:-141.829,-167.718,-423.973,0,-256.265,-239.106,-56.8637,-313.115,-145.409,-300.471 0|0:207:70,11,58,45:70:2665:11,58,45:426,2134,1304:-151.187,-137.258,-347.666,0,-178.733,-196.273,-72.5663,-251.278,-114.04,-272.729 dDocent_Contig_4363 7 . T A 3555.87 . AB=0.661972;ABP=19.1893;AC=4;AF=0.666667;AN=6;AO=111;CIGAR=1X1M1X2M;DP=135;DPB=135;DPRA=0;EPP=244.044;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.6847;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4202;QR=814;RO=21;RPL=0;RPP=244.044;RPPR=48.6112;RPR=111;RUN=1;SAF=111;SAP=244.044;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:64:0,64,0:0:0:64,0:2412,0:-217.029,-19.2659,0,-217.029,-19.2659,-217.029 0|1:40:13,24,3:13:504:24,3:915,116:-71.1443,0,-34.1841,-65.5291,-31.881,-106.036 0|1:31:8,23,0:8:310:23,0:875,0:-69.7326,0,-18.9318,-72.1409,-25.8555,-97.611 dDocent_Contig_4364 27 . A C 504.69 . AB=0.264368;ABP=44.9671;AC=3;AF=0.5;AN=6;AO=23;CIGAR=1X2M;DP=87;DPB=87;DPRA=0;EPP=52.9542;EPPR=135.47;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.913043;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=875;QR=2331;RO=61;RPL=0;RPP=52.9542;RPPR=135.47;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:28:25,0,3:25:945:0,3:0,119:-2.66655,-10.1923,-87.6336,0,-77.8355,-76.9325 0|1:36:19,3,14:19:730:3,14:114,524:-37.1862,-33.5553,-92.5852,0,-50.5821,-55.7165 0|1:23:17,0,6:17:656:0,6:0,232:-14.3252,-19.4427,-73.3162,0,-54.2596,-52.4534 dDocent_Contig_4365 25 . A T 2100.38 . AB=0.559055;ABP=6.8574;AC=3;AF=0.5;AN=6;AO=71;CIGAR=1X;DP=127;DPB=127;DPRA=0;EPP=157.185;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=51.8592;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2817;QR=2247;RO=56;RPL=0;RPP=157.185;RPPR=124.613;RPR=71;RUN=1;SAF=71;SAP=157.185;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:14,21:14:561:21:828:-63.5324,0,-40.2961 0/1:51:29,22:29:1179:22:886:-63.3521,0,-91.0309 0/1:41:13,28:13:507:28:1103:-86.8698,0,-33.6305 dDocent_Contig_4366 8 . C G 38.8602 . AB=0.2;ABP=14.7363;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=2X;DP=29;DPB=29;DPRA=0.535714;EPP=9.52472;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=111;QR=986;RO=26;RPL=0;RPP=9.52472;RPPR=59.4686;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:14:14,0:14:526:0:0:0,-4.21442,-47.6822 0|1:3:2,1:2:70:1:34:-2.49582,0,-5.74313 0|1:12:10,2:10:390:2:77:-3.69678,0,-31.8464 dDocent_Contig_4367 10 . G A 75.576 . AB=0.333333;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=47;DPB=47;DPRA=0.473684;EPP=9.52472;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.3636;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=1762;RO=44;RPL=0;RPP=9.52472;RPPR=98.5551;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:6,3:6:244:3:120:-8.47842,0,-19.0408 0/0:15:15,0:15:592:0:0:0,-4.51545,-53.576 0/0:23:23,0:23:926:0:0:0,-6.92369,-83.6223 dDocent_Contig_4368 11 . C T 764.81 . AB=0.0526316;ABP=69.0688;AC=0;AF=0;AN=6;AO=2;CIGAR=1M3X4M;DP=100;DPB=100;DPRA=0;EPP=7.35324;EPPR=100.727;GTI=0;LEN=1;MEANALT=4;MQM=26;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=52;QR=1778;RO=45;RPL=0;RPP=7.35324;RPPR=100.727;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:38:19,11,1,0,2,5:19:754:11,1,0,2,5:336,40,0,52,161:-19.0248,0,-58.8273,-21.4471,-58.8461,-83.2737,-24.7444,-62.1386,-83.5747,-86.8674,-21.2144,-58.6125,-80.044,-83.3367,-82.7346,-12.4702,-49.8842,-71.3119,-74.6047,-71.0753,-73.0996 0|0:31:5,0,7,2,0,17:5:188:0,7,2,0,17:0,256,75,0,600:-50.8712,-52.3764,-67.7817,-31.666,-47.0737,-44.9665,-46.6777,-62.0833,-41.3752,-61.4812,-52.3764,-67.7817,-47.0737,-62.0833,-67.7817,-5.29531,-20.7019,0,-15.0059,-20.7019,-15.5844 0|0:31:21,0,2,2,0,6:21:836:0,2,2,0,6:0,80,75,0,210:-10.3017,-16.6233,-85.4883,-10.0312,-78.9052,-78.3032,-10.5677,-79.4364,-72.8534,-78.8344,-16.6233,-85.4883,-78.9052,-79.4364,-85.4883,0,-68.8498,-62.2674,-62.7991,-68.8498,-67.0436 dDocent_Contig_4369 8 . C T 224.407 . AB=0.346154;ABP=8.35546;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=62;DPB=62;DPRA=0;EPP=24.725;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=389;QR=1993;RO=52;RPL=0;RPP=24.725;RPPR=115.927;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:36:35,1:35:1340:1:39:0,-6.94052,-116.992 0/1:10:9,1:9:346:1:38:-0.786969,0,-28.4889 0/1:16:8,8:8:307:8:312:-23.6284,0,-23.1747 dDocent_Contig_4371 8 . C T 259.074 . AB=0.452381;ABP=3.83753;AC=2;AF=0.333333;AN=6;AO=19;CIGAR=1X;DP=54;DPB=54;DPRA=1.75;EPP=44.2683;EPPR=70.5741;GTI=0;LEN=1;MEANALT=1;MQM=26.6842;MQMR=56.8571;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.714286;PAO=0;PQA=0;PQR=0;PRO=0;QA=539;QR=1353;RO=35;RPL=0;RPP=44.2683;RPPR=79.0118;RPR=19;RUN=1;SAF=0;SAP=44.2683;SAR=19;SRF=34;SRP=70.5741;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:460:0:0:0,-3.61236,-41.59 0/1:24:14,10:14:542:10:280:-14.3973,0,-41.1981 0/1:18:9,9:9:351:9:259:-13.8288,0,-26.5333 dDocent_Contig_4372 20 . G C 1041.92 . AB=0.5;ABP=3.0103;AC=4;AF=0.666667;AN=6;AO=32;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=72.4974;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1292;QR=696;RO=18;RPL=0;RPP=72.4974;RPPR=42.0968;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:7,9:7:278:9:360:-27.9458,0,-20.574 0/1:20:11,9:11:418:9:366:-27.2846,0,-31.9399 1/1:14:0,14:0:0:14:566:-51.2802,-4.21442,0 dDocent_Contig_4373 7 . T A 220.173 . AB=0.244444;ABP=28.5372;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=79;DPB=79;DPRA=0.661765;EPP=26.8965;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=413;QR=2556;RO=68;RPL=0;RPP=26.8965;RPPR=150.67;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:25,8:25:930:8:306:-17.967,0,-74.0776 0/1:12:9,3:9:340:3:107:-6.36907,0,-27.3432 0/0:34:34,0:34:1286:0:0:0,-10.235,-116.031 dDocent_Contig_4374 16 . C T 68.273 . AB=0.15625;ABP=35.8538;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=16.0391;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.954545;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=1739;RO=44;RPL=0;RPP=16.0391;RPPR=98.5551;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:17,1:17:674:1:41:0,-1.32397,-56.8978 0/1:28:24,4:24:943:4:161:-6.44606,0,-76.7448 0/1:4:3,1:3:122:1:39:-2.69244,0,-10.1684 dDocent_Contig_4375 46 . A G 164.311 . AB=0.291667;ABP=12.0581;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=38;DPB=38;DPRA=0;EPP=20.3821;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.933333;PAO=0;PQA=0;PQR=0;PRO=0;QA=320;QR=1164;RO=30;RPL=0;RPP=20.3821;RPPR=68.1545;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:13,1:13:514:1:40:0,-0.218741,-42.6094 0/1:13:9,4:9:358:4:160:-10.87,0,-28.6687 0/1:11:8,3:8:292:3:120:-7.87636,0,-23.3117 dDocent_Contig_4376 98 . N T 67.4638 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=71;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:71:-6.74206,-0.60206,0 dDocent_Contig_4377 111 . C T 75.3297 . AB=0.307692;ABP=7.18621;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=55;DPB=55;DPRA=0.619048;EPP=11.6962;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=137;QR=1709;RO=51;RPL=0;RPP=11.6962;RPPR=113.755;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=113.755;SRR=51;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:923:0:0:0,-8.42884,-83.3738 0/1:13:9,4:9:305:4:137:-8.75482,0,-23.8666 0/0:14:14,0:14:481:0:0:0,-4.21442,-43.6182 dDocent_Contig_4378 138 . G A 126.781 . AB=0.222222;ABP=27.1378;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=56;DPB=56;DPRA=0.9;EPP=20.3821;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=1749;RO=48;RPL=0;RPP=20.3821;RPPR=107.241;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=107.241;SRR=48;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:17,2:17:623:2:71:-1.02151,0,-50.6857 0/0:20:20,0:20:730:0:0:0,-6.0206,-66.0274 0/1:17:11,6:11:396:6:207:-13.843,0,-30.8619 dDocent_Contig_4379 23 . A G 1423.32 . AB=0.0625;ABP=162.614;AC=4;AF=0.666668;AN=6;AO=6;CIGAR=4M2X5M1X6M1X2M;DP=365;DPB=365;DPRA=0;EPP=16.0391;EPPR=120.27;GTI=0;LEN=1;MEANALT=16;MQM=60;MQMR=60;NS=3;NUMALT=9;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=223;QR=2086;RO=54;RPL=0;RPP=16.0391;RPPR=120.27;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:96:8,10,6,9,10,7,2,9,10,6:8:316:10,6,9,10,7,2,9,10,6:154,225,335,386,227,77,243,360,223:-31.855,-26.0905,-49.0888,-15.8315,-33.6695,-40.0363,-6.83929,-24.6785,-14.419,-30.1414,-3.35788,-21.1975,-10.9377,-1.94542,-26.3592,-16.5318,-34.3703,-24.1112,-15.1194,-11.6381,-40.4352,-27.9612,-45.7978,-35.5405,-26.5487,-23.0674,-36.2406,-53.3696,-17.5463,-35.3859,-25.1256,-16.134,-12.6528,-25.8262,-37.2546,-40.847,-4.89385,-22.7335,-12.4736,-3.48141,0,-13.174,-24.6032,-14.1888,-27.8949,-16.0099,-33.8479,-23.5894,-14.5974,-11.116,-24.2896,-35.7189,-25.304,-12.652,-40.2146 0|1:167:29,6,15,13,15,28,11,6,11,0:29:1114:6,15,13,15,28,11,6,11,0:107,564,480,576,999,422,162,408,0:-72.3823,-74.8977,-164.539,-34.9087,-120.144,-121.844,-41.854,-127.089,-87.1017,-129.391,-34.9446,-120.18,-80.1925,-87.1376,-121.88,0,-85.2368,-45.2484,-52.1936,-45.2843,-83.0223,-46.589,-131.824,-91.8367,-98.7818,-91.8726,-56.9285,-134.728,-69.9663,-155.199,-115.213,-122.158,-115.249,-80.3054,-126.893,-159.609,-47.7279,-132.963,-92.9755,-99.9206,-93.0114,-58.0674,-104.656,-128.032,-135.867,-81.1122,-166.345,-126.359,-133.304,-126.395,-91.4511,-138.039,-161.415,-139.178,-172.561 0|1:102:17,9,8,15,13,8,7,1,4,0:17:656:9,8,15,13,8,7,1,4,0:140,320,572,503,313,258,27,152,0:-41.8092,-39.4481,-90.6161,-20.5587,-66.961,-72.0333,0,-46.4058,-27.5172,-49.3693,-6.97741,-53.3819,-34.4941,-13.9361,-56.9478,-21.3154,-67.7175,-48.8314,-28.2738,-35.2507,-72.7898,-25.9142,-72.3157,-53.4299,-32.8726,-39.8493,-54.1864,-77.689,-45.0693,-91.4682,-72.5841,-52.0273,-59.0038,-73.3405,-77.9388,-98.6487,-34.4584,-80.8587,-61.9738,-41.4166,-48.3933,-62.7303,-67.3286,-86.4824,-87.1357,-46.9267,-93.3253,-74.4416,-53.8847,-60.8612,-75.198,-79.7962,-98.9497,-88.3398,-100.807 dDocent_Contig_4380 7 . T C 2057.72 . 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AB=0.384615;ABP=4.51363;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=32;DPB=32;DPRA=1.36842;EPP=13.8677;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=1017;RO=27;RPL=5;RPP=13.8677;RPPR=61.6401;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:511:0:0:0,-4.21442,-46.3104 0/1:13:8,5:8:308:5:195:-14.0106,0,-24.1668 0/0:5:5,0:5:198:0:0:0,-1.50515,-18.1976 dDocent_Contig_4389 21 . C A 572.918 . 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A G 142.658 . AB=0.555556;ABP=3.25157;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=49;DPB=49;DPRA=0.45;EPP=13.8677;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=1580;RO=44;RPL=5;RPP=13.8677;RPPR=98.5551;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=98.5551;SRR=44;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:1014:0:0:0,-8.42884,-91.5616 0/1:9:4,5:4:135:5:198:-15.4876,0,-9.77055 0/0:12:12,0:12:431:0:0:0,-3.61236,-39.1227 dDocent_Contig_4395 7 . T C 710.269 . AB=0.0873786;ABP=155.33;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X2M1X5M;DP=122;DPB=122;DPRA=0;EPP=22.5536;EPPR=83.3548;GTI=0;LEN=1;MEANALT=6.5;MQM=41.8889;MQMR=60;NS=3;NUMALT=7;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=348;QR=1432;RO=37;RPL=0;RPP=22.5536;RPPR=83.3548;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:34:10,6,1,1,4,5,2,5:10:380:6,1,1,4,5,2,5:195,37,39,158,200,81,196:-13.4664,-1.31971,-30.6725,-13.5795,-29.5819,-44.444,-13.2702,-29.2727,-41.5387,-44.1351,-3.47106,-19.4761,-31.7409,-31.4319,-33.4342,0,-16.0063,-28.2708,-27.9617,-18.163,-29.6631,-9.7948,-25.7983,-38.064,-37.755,-27.9569,-24.4866,-40.3594,-0.354921,-16.3608,-28.6251,-28.316,-18.5174,-15.0469,-24.841,-30.0173 0|0:19:9,1,0,1,0,3,3,2:9:344:1,0,1,0,3,3,2:39,0,40,0,120,114,81:-7.17866,-6.68246,-34.5991,-9.88793,-34.9001,-38.1061,-6.59215,-31.6043,-34.8104,-34.5093,-9.88793,-34.9001,-38.1061,-34.8104,-38.1061,0,-25.0125,-28.2187,-24.9226,-28.2187,-27.3156,-0.573609,-25.5813,-28.7872,-25.4915,-28.7872,-18.8997,-27.8841,-3.20597,-28.2189,-31.425,-28.129,-31.425,-21.5368,-22.1059,-30.8229 0|1:69:18,19,8,9,1,0,12,2:18:708:19,8,9,1,0,12,2:728,311,353,40,0,468,81:-54.0007,0,-52.5231,-35.0823,-33.9066,-90.9162,-30.3889,-29.2132,-64.2951,-85.923,-56.1239,-54.9474,-90.0292,-85.3369,-114.066,-59.4193,-58.2427,-93.3245,-88.6323,-114.367,-117.662,-21.0473,-19.8721,-54.9538,-50.2609,-75.9955,-79.2908,-75.6784,-52.7393,-51.5628,-86.6448,-81.9524,-107.687,-110.982,-72.611,-110.38 dDocent_Contig_4396 9 . C T 52.0371 . AB=0.2;ABP=30.3709;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=2X4M;DP=47;DPB=47;DPRA=0;EPP=18.2106;EPPR=63.8115;GTI=0;LEN=1;MEANALT=2.5;MQM=20;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.857143;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=1096;RO=28;RPL=0;RPP=18.2106;RPPR=63.8115;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:12:6,4,0,2:6:226:4,0,2:153,0,72:-4.00536,-2.1237,-19.4551,-5.81154,-20.6592,-24.4119,0,-14.9245,-18.6595,-18.0574 0|1:12:6,2,3,1:6:237:2,3,1:76,60,35:-1.86896,-1.78284,-20.7957,0,-17.7719,-18.7295,-1.07005,-18.8197,-17.0557,-20.4008 0|0:23:16,0,4,3:16:633:0,4,3:0,80,105:-2.98203,-7.79851,-60.0072,-2.96409,-55.1242,-53.9201,0,-52.2768,-47.4018,-51.3737 dDocent_Contig_4397 7 . T G 136.829 . 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C A 16438.9 . AB=0.0516717;ABP=2874.93;AC=3;AF=0.5;AN=6;AO=85;CIGAR=1X3M;DP=1645;DPB=1649.25;DPRA=0;EPP=187.585;EPPR=1220.55;GTI=0;LEN=1;MEANALT=12.3333;MQM=58.8353;MQMR=59.741;NS=3;NUMALT=2;ODDS=0;PAIRED=0.882353;PAIREDR=0.56787;PAO=0;PQA=0;PQR=0;PRO=0;QA=3252;QR=30568;RO=803;RPL=0;RPP=187.585;RPPR=1746.7;RPR=85;RUN=1;SAF=85;SAP=187.585;SAR=0;SRF=737;SRP=1220.55;SRR=66;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:541:281,191,20:281:10680:191,20:7280,764:-511.382,0,-818.226,-533.342,-813.094,-1403.05 0|1:506:229,213,12:229:8613:213,12:8167,458:-599.904,0,-641.456,-631.863,-668.597,-1333.82 0|1:598:293,199,53:293:11275:199,53:7659,2030:-536.319,0,-865.33,-457.92,-758.634,-1367.2 dDocent_Contig_4400 12 . C T 364.505 . AB=0.358974;ABP=9.74743;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=39;DPB=39;DPRA=0;EPP=33.4109;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.96;PAO=0;PQA=0;PQR=0;PRO=0;QA=564;QR=1002;RO=25;RPL=0;RPP=33.4109;RPPR=57.2971;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:10,3:10:399:3:120:-7.27392,0,-32.3554 0/1:19:10,9:10:409:9:363:-27.3147,0,-31.451 0/1:7:5,2:5:194:2:81:-5.57852,0,-15.7204 dDocent_Contig_4401 34 . A C 48.4402 . AB=0.16;ABP=28.1125;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=49;DPB=49;DPRA=2.08333;EPP=11.6962;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=147;QR=1753;RO=45;RPL=0;RPP=11.6962;RPPR=100.727;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:898:0:0:0,-6.92369,-81.1339 0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931 0/1:25:21,4:21:823:4:147:-6.06288,0,-66.8622 dDocent_Contig_4402 117 . C A 164.64 . AB=0.184211;ABP=68.8402;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=76;DPB=76;DPRA=0;EPP=33.4109;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=467;QR=2061;RO=62;RPL=0;RPP=33.4109;RPPR=137.642;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=137.642;SRR=62;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:13,6:13:439:6:189:-11.6004,0,-34.1145 0/1:21:17,4:17:560:4:139:-6.53106,0,-44.3908 0/1:36:32,4:32:1062:4:139:-2.01561,0,-85.0404 dDocent_Contig_4404 134 . G C 83.7188 . AB=0.263158;ABP=12.2676;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=38;DPB=38;DPRA=2;EPP=13.8677;EPPR=72.4974;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=167;QR=1097;RO=32;RPL=0;RPP=13.8677;RPPR=72.4974;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=72.4974;SRR=32;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:451:0:0:0,-3.91339,-40.9217 0/0:6:6,0:6:197:0:0:0,-1.80618,-18.0532 0/1:19:13,5:13:449:5:167:-9.59364,0,-34.9725 dDocent_Contig_4406 12 . T C 177.902 . AB=0.204545;ABP=36.372;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=47;DPB=47;DPRA=7.33333;EPP=22.5536;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=362;QR=1543;RO=38;RPL=0;RPP=22.5536;RPPR=85.5263;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3,0:3:122:0:0:0,-0.90309,-11.3725 0/1:15:13,2:13:527:2:82:-3.26423,0,-43.2617 0/1:29:22,7:22:894:7:280:-16.8421,0,-72.0354 dDocent_Contig_4407 24 . A T 7222.41 . AB=0.87395;ABP=292.09;AC=4;AF=0.666667;AN=6;AO=309;CIGAR=1X;DP=345;DPB=345;DPRA=0;EPP=673.995;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=32.1197;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=0;PAIREDR=0.666667;PAO=0;PQA=0;PQR=0;PRO=0;QA=10324;QR=1410;RO=36;RPL=0;RPP=673.995;RPPR=81.1833;RPR=309;RUN=1;SAF=0;SAP=673.995;SAR=309;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:146:13,133:13:501:133:4492:-312.016,0,-1.47481 1/1:107:6,101:6:230:101:3317:-240.124,-11.1473,0 0/1:92:17,75:17:679:75:2515:-172.313,0,-33.7459 dDocent_Contig_4408 84 . G T 64.3988 . AB=0.2;ABP=18.6449;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=35;DPB=35;DPRA=2.66667;EPP=11.6962;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=148;QR=1131;RO=31;RPL=4;RPP=11.6962;RPPR=70.3259;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4,0:4:146:0:0:0,-1.20412,-13.4978 0/0:11:11,0:11:405:0:0:0,-3.31133,-36.7972 0/1:20:16,4:16:580:4:148:-7.66137,0,-46.5142 dDocent_Contig_4409 10 . T C 38.2908 . AB=0.142857;ABP=26.2761;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=62;DPB=62;DPRA=1.02439;EPP=9.52472;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=2332;RO=59;RPL=0;RPP=9.52472;RPPR=131.127;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1228:0:0:0,-9.33193,-110.793 0/1:21:18,3:18:701:3:122:-5.05086,0,-57.091 0/0:10:10,0:10:403:0:0:0,-3.0103,-36.629 dDocent_Contig_4410 61 . A G 44.5464 . AB=0.166667;ABP=20.3821;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=64;DPB=64;DPRA=0.782609;EPP=9.52472;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=2418;RO=61;RPL=3;RPP=9.52472;RPPR=135.47;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:833:0:0:0,-6.32163,-75.2867 0/0:25:25,0:25:992:0:0:0,-7.52575,-89.5819 0/1:18:15,3:15:593:3:119:-5.67647,0,-48.2915 dDocent_Contig_4412 64 . G A 1312.95 . AB=0.484848;ABP=3.20771;AC=3;AF=0.5;AN=6;AO=48;CIGAR=1X;DP=99;DPB=99;DPRA=0;EPP=107.241;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1820;QR=1852;RO=51;RPL=48;RPP=107.241;RPPR=113.755;RPR=0;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:4,22:4:126:22:832:-67.3771,0,-3.82259 0/1:34:25,9:25:940:9:337:-20.4481,0,-74.6811 0/1:39:22,17:22:786:17:651:-47.1854,0,-59.3188 dDocent_Contig_4413 13 . C A 77.1688 . AB=0.115942;ABP=91.4113;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=84;DPB=84;DPRA=2.3;EPP=20.3821;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=324;QR=3061;RO=76;RPL=0;RPP=20.3821;RPPR=168.042;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:34,3:34:1377:3:122:-0.234383,0,-113.044 0/0:15:15,0:15:604:0:0:0,-4.51545,-54.6991 0/1:32:27,5:27:1080:5:202:-8.92891,0,-87.8504 dDocent_Contig_4415 195 . G A 120.732 . AB=0.3125;ABP=7.89611;AC=1;AF=0.25;AN=4;AO=5;CIGAR=1X;DP=22;DPB=22;DPRA=2.66667;EPP=13.8677;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=672;RO=17;RPL=5;RPP=13.8677;RPPR=39.9253;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=39.9253;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/0:6:6,0:6:224:0:0:0,-1.80618,-20.5172 0/1:16:11,5:11:448:5:199:-13.471,0,-35.8589 dDocent_Contig_4416 11 . C A 842.16 . AB=0.217054;ABP=92.714;AC=2;AF=0.333333;AN=6;AO=28;CIGAR=2M1X1M;DP=129;DPB=122.5;DPRA=0;EPP=63.8115;EPPR=41.6174;GTI=0;LEN=1;MEANALT=2.66667;MQM=55.7143;MQMR=50.9091;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.428571;PAO=0;PQA=0;PQR=0;PRO=0;QA=1113;QR=2868;RO=77;RPL=0;RPP=63.8115;RPPR=170.214;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=57;SRP=41.6174;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:65:36,10,19,0:36:1320:10,19,0:378,748,0:-50.533,-30.3924,-134.052,0,-75.6916,-100.958,-61.37,-137.062,-106.678,-168.046 0|0:41:26,2,3,10:26:964:2,3,10:76,119,385:-21.6288,-23.2212,-81.0875,-19.7013,-71.9344,-77.2682,0,-52.1986,-48.6787,-55.4267 0|1:23:15,1,6,1:15:584:1,6,1:38,246,41:-15.7709,-17.1735,-64.1519,0,-44.1708,-45.4808,-16.9017,-61.068,-43.9014,-63.8829 dDocent_Contig_4417 20 . C T 166.017 . AB=0.375;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=37;DPB=37;DPRA=1.52381;EPP=16.0391;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.1613;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.935484;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=1240;RO=31;RPL=0;RPP=16.0391;RPPR=70.3259;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:10,6:10:389:6:244:-17.5223,0,-30.0528 0/0:5:5,0:5:203:0:0:0,-1.50515,-18.6531 0/0:16:16,0:16:648:0:0:0,-4.81648,-58.6535 dDocent_Contig_4418 13 . A C 106.769 . AB=0.181818;ABP=32.0291;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=79;DPB=79;DPRA=0;EPP=22.5536;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=367;QR=2796;RO=70;RPL=0;RPP=22.5536;RPPR=155.013;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:46:43,3:43:1708:3:121:0,-2.56718,-142.667 0/1:7:5,2:5:205:2:82:-5.67247,0,-16.7278 0/1:26:22,4:22:883:4:164:-7.32312,0,-71.9509 dDocent_Contig_4419 27 . A G 1097.07 . AB=0.291925;ABP=63.5553;AC=3;AF=0.5;AN=6;AO=47;CIGAR=2X2M;DP=161;DPB=161;DPRA=0;EPP=96.5684;EPPR=213.974;GTI=0;LEN=1;MEANALT=2;MQM=58.2979;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.893617;PAIREDR=0.980952;PAO=0;PQA=0;PQR=0;PRO=0;QA=1775;QR=4110;RO=105;RPL=0;RPP=105.07;RPPR=231.015;RPR=47;RUN=1;SAF=46;SAP=96.5684;SAR=1;SRF=103;SRP=213.974;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:46:32,0,14:32:1250:0,14:0,514:-32.2036,-41.8365,-144.613,0,-103.148,-98.9333 0|1:40:27,0,12:27:1050:0,12:0,456:-29.2659,-37.3937,-123.681,0,-86.29,-82.6777 0|1:75:46,5,21:46:1810:5,21:182,805:-51.954,-50.9385,-198.33,0,-134.043,-142.585 dDocent_Contig_4420 63 . G A 52.8475 . AB=0.3;ABP=6.48466;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=73;DPB=73;DPRA=0.31746;EPP=9.52472;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=102;QR=2337;RO=70;RPL=0;RPP=9.52472;RPPR=155.013;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=155.013;SRR=70;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:38,0:38:1270:0:0:0,-11.4391,-114.596 0/1:10:7,3:7:236:3:102:-6.5066,0,-18.56 0/0:25:25,0:25:831:0:0:0,-7.52575,-75.096 dDocent_Contig_4421 19 . T C 1022.51 . AB=0.548387;ABP=4.27115;AC=3;AF=0.5;AN=6;AO=34;CIGAR=1X;DP=62;DPB=62;DPRA=0;EPP=76.8404;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.823529;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1373;QR=1122;RO=28;RPL=0;RPP=76.8404;RPPR=63.8115;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:8,6:8:324:6:240:-17.7616,0,-25.315 0/1:20:8,12:8:320:12:488:-38.2507,0,-23.1462 0/1:28:12,16:12:478:16:645:-49.9553,0,-34.9396 dDocent_Contig_4423 23 . T C 1479.2 . AB=0.485714;ABP=3.19643;AC=3;AF=0.5;AN=6;AO=51;CIGAR=1X;DP=105;DPB=105;DPRA=0;EPP=113.755;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2025;QR=2115;RO=54;RPL=0;RPP=113.755;RPPR=120.27;RPR=51;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:20,26:20:792:26:1020:-78.2485,0,-57.7478 0/1:22:11,11:11:406:11:446:-33.8731,0,-30.248 0/1:37:23,14:23:917:14:559:-39.5146,0,-71.6946 dDocent_Contig_4424 62 . G A 126.32 . AB=0.111111;ABP=14.8328;AC=3;AF=0.5;AN=6;AO=5;CIGAR=1X;DP=19;DPB=19;DPRA=1.08333;EPP=13.8677;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=167;QR=498;RO=14;RPL=5;RPP=13.8677;RPPR=33.4109;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:131:-12.1118,-1.20412,0 0/0:6:6,0:6:220:0:0:0,-1.80618,-20.1555 0/1:9:8,1:8:278:1:36:-0.889005,0,-22.6487 dDocent_Contig_4425 68 . A T 187.657 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=35;DPB=35;DPRA=0.333333;EPP=13.8677;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=1176;RO=30;RPL=5;RPP=13.8677;RPPR=68.1545;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:199:-18.2884,-1.50515,0 0/0:21:21,0:21:813:0:0:0,-6.32163,-73.4906 0/0:9:9,0:9:363:0:0:0,-2.70927,-33.0343 dDocent_Contig_4426 14 . C T 865.391 . 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A C 1503.66 . AB=0.257028;ABP=130.691;AC=3;AF=0.5;AN=6;AO=64;CIGAR=1X2M1X2M1X;DP=249;DPB=249;DPRA=0;EPP=141.985;EPPR=372.161;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=0.988235;PAO=0;PQA=0;PQR=0;PRO=0;QA=2494;QR=6596;RO=170;RPL=0;RPP=141.985;RPPR=372.161;RPR=64;RUN=1;SAF=64;SAP=141.985;SAR=0;SRF=170;SRP=372.161;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:97:86,10,0:86:3323:10,0:380,0:-5.53683,0,-270.193,-31.4254,-273.203,-304.365 0|1:76:47,16,12:47:1822:16,12:628,469:-37.4997,0,-144.86,-13.0984,-111.125,-159.161 0|1:76:37,38,1:37:1451:38,1:1486,38:-111.046,0,-107.896,-119.068,-116.219,-238.091 dDocent_Contig_4431 11 . G A 1047.5 . 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C A 83.918 . AB=0.25;ABP=13.8677;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=63;DPB=63;DPRA=0.930233;EPP=13.8677;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=170;QR=1992;RO=58;RPL=0;RPP=13.8677;RPPR=128.956;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=128.956;SRR=58;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:37,0:37:1263:0:0:0,-11.1381,-113.972 0/0:6:6,0:6:208:0:0:0,-1.80618,-19.0596 0/1:20:15,5:15:521:5:170:-9.61356,0,-41.1991 dDocent_Contig_4433 37 . C T 1011.07 . AB=0.322581;ABP=36.9133;AC=3;AF=0.5;AN=6;AO=40;CIGAR=1X;DP=124;DPB=124;DPRA=0;EPP=45.5712;EPPR=152.325;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.725;PAIREDR=0.952381;PAO=0;PQA=0;PQR=0;PRO=0;QA=1568;QR=3316;RO=84;RPL=0;RPP=89.8692;RPPR=185.414;RPR=40;RUN=1;SAF=34;SAP=45.5712;SAR=6;SRF=80;SRP=152.325;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:33,10:33:1282:10:388:-22.3301,0,-102.711 0/1:53:35,18:35:1395:18:706:-47.9137,0,-109.853 0/1:28:16,12:16:639:12:474:-34.5798,0,-49.4154 dDocent_Contig_4434 8 . C T 362.387 . AB=0.097561;ABP=233.716;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X5M;DP=164;DPB=166.167;DPRA=0;EPP=37.7539;EPPR=267.93;GTI=0;LEN=1;MEANALT=3.66667;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0.9375;PAIREDR=0.97541;PAO=0;PQA=0;PQR=0;PRO=0;QA=617;QR=4754;RO=122;RPL=0;RPP=37.7539;RPPR=267.93;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=122;SRP=267.93;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:49:31,3,11,1,3:31:1200:3,11,1,3:114,423,40,120:-25.3916,-25.3757,-123.045,0,-89.2217,-95.2589,-31.4277,-120.653,-95.2748,-129.701,-24.8359,-114.062,-88.6841,-120.116,-122.508 0|1:68:51,9,1,7,0:51:1986:9,1,7,0:347,39,277,0:-13.1377,0,-160.51,-25.2843,-160.013,-188.207,-5.68892,-140.421,-165.71,-166.808,-28.4902,-163.219,-188.508,-168.915,-191.713 0|1:47:40,1,4,1,0:40:1568:1,4,1,0:31,155,41,0:-0.702939,-10.2673,-138.91,0,-126.478,-127.76,-9.3551,-135.827,-125.58,-138.013,-12.7441,-139.211,-128.964,-138.314,-141.698 dDocent_Contig_4435 106 . N G 94.2778 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=2X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=45;MQMR=0;NS=1;NUMALT=1;ODDS=5.29832;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=102;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,3:0:0:3:102:-9.42562,-0.90309,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_4436 41 . A C 138.189 . AB=0.384615;ABP=4.51363;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=35;DPB=35;DPRA=1.18182;EPP=13.8677;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=1150;RO=30;RPL=0;RPP=13.8677;RPPR=68.1545;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:8,5:8:325:5:203:-14.7397,0,-25.706 0/0:14:14,0:14:526:0:0:0,-4.21442,-47.6683 0/0:8:8,0:8:299:0:0:0,-2.40824,-27.255 dDocent_Contig_4437 10 . G A 173.064 . AB=0.291667;ABP=12.0581;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=45;DPB=45;DPRA=2.28571;EPP=18.2106;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=1481;RO=38;RPL=0;RPP=18.2106;RPPR=85.5263;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:352:0:0:0,-2.70927,-32.0416 0/0:12:12,0:12:459:0:0:0,-3.61236,-41.6517 0/1:24:17,7:17:670:7:282:-18.5282,0,-53.4042 dDocent_Contig_4438 162 . G A 50.5522 . AB=0.230769;ABP=11.1951;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=26;DPB=26;DPRA=2;EPP=9.52472;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=106;QR=909;RO=23;RPL=3;RPP=9.52472;RPPR=52.9542;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:10,3:10:400:3:106:-5.97531,0,-32.4449 0/0:10:10,0:10:395:0:0:0,-3.0103,-35.9062 0/0:3:3,0:3:114:0:0:0,-0.90309,-10.6292 dDocent_Contig_4439 120 . T C 78.2881 . AB=0.232558;ABP=29.7245;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=51;DPB=51;DPRA=2.6875;EPP=24.725;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=26.8;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=321;QR=1370;RO=41;RPL=0;RPP=24.725;RPPR=92.0407;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=92.0407;SRR=41;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:274:0:0:0,-2.40824,-24.9938 0/1:17:12,5:12:413:5:156:-6.74319,0,-32.3835 0/1:26:21,5:21:683:5:165:-3.40293,0,-53.9485 dDocent_Contig_4440 115 . A G 414.331 . AB=0.365385;ABP=11.1951;AC=1;AF=0.166667;AN=6;AO=20;CIGAR=1X;DP=96;DPB=96;DPRA=1.5;EPP=46.4397;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=676;QR=2491;RO=76;RPL=0;RPP=46.4397;RPPR=168.042;RPR=20;RUN=1;SAF=0;SAP=46.4397;SAR=20;SRF=0;SRP=168.042;SRR=76;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:33,19:33:1058:19:641:-42.3539,0,-79.8571 0/0:24:24,0:24:779:0:0:0,-7.22472,-70.412 0/0:20:19,1:19:654:1:35:0,-2.52197,-55.6835 dDocent_Contig_4441 22 . G T 750.005 . AB=0.0441176;ABP=125.762;AC=0;AF=0;AN=6;AO=3;CIGAR=1X1M1X;DP=81;DPB=81;DPRA=2.61538;EPP=9.52472;EPPR=87.6977;GTI=0;LEN=1;MEANALT=2.5;MQM=56.6667;MQMR=60;NS=3;NUMALT=3;ODDS=6.93889e-18;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=1239;RO=39;RPL=0;RPP=9.52472;RPPR=87.6977;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=87.6977;SRR=39;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:13:12,0,1,0:12:377:0,1,0:0,25,0:0,-3.61236,-33.979,-1.41353,-32.0351,-31.734,-3.61236,-33.979,-32.0351,-33.979 0|0:36:17,2,17,0:17:529:2,17,0:70,568,0:-40.8402,-40.2661,-82.1304,0,-36.7493,-37.3258,-45.9577,-82.7325,-42.4433,-88.4239 0|0:32:10,1,14,7:10:333:1,14,7:35,486,245:-36.4788,-36.6413,-63.286,0,-24.0934,-22.7273,-19.6619,-43.7585,-7.10953,-44.4993 dDocent_Contig_4442 24 . A T 318.156 . 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G T 61.5631 . AB=0.162162;ABP=39.6906;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=87;DPB=87;DPRA=0.95;EPP=20.3821;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.974684;PAO=0;PQA=0;PQR=0;PRO=0;QA=265;QR=2513;RO=79;RPL=8;RPP=20.3821;RPPR=174.557;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:30,0:30:937:0:0:0,-9.0309,-84.6212 0/1:37:31,6:31:992:6:202:-7.37287,0,-78.4377 0/0:20:18,2:18:584:2:63:0,-0.0368336,-46.8849 dDocent_Contig_4455 122 . C T 116.931 . 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AB=0.577778;ABP=5.37479;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X;DP=45;DPB=45;DPRA=0;EPP=59.4686;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1053;QR=772;RO=19;RPL=0;RPP=59.4686;RPPR=44.2683;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:6,7:6:243:7:285:-22.111,0,-18.3348 0/1:12:8,4:8:325:4:160:-11.1711,0,-26.0073 0/1:20:5,15:5:204:15:608:-49.0371,0,-12.7234 dDocent_Contig_4459 20 . T C 656.907 . 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AB=0.125;ABP=51.8684;AC=3;AF=0.5;AN=6;AO=5;CIGAR=1X6M;DP=40;DPB=40;DPRA=0;EPP=13.8677;EPPR=44.2683;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=191;QR=738;RO=19;RPL=0;RPP=13.8677;RPPR=44.2683;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:13:8,0,3,2:8:308:0,3,2:0,120,78:-7.48295,-9.89119,-35.1727,0,-25.2843,-24.3812,-3.4834,-28.7608,-18.8715,-28.1588 0|1:20:7,8,2,2:7:271:8,2,2:314,56,76:-23.7538,0,-19.8844,-21.712,-18.1445,-43.3708,-19.6263,-16.0567,-37.741,-41.2932 0|1:7:4,1,0,1:4:159:1,0,1:40,0,37:-2.10754,0,-12.8216,-3.31166,-13.1226,-16.4203,-0.282957,-10.0979,-13.3956,-13.0946 dDocent_Contig_4462 28 . A C 237.724 . AB=0.215686;ABP=38.8183;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=118;DPB=118;DPRA=1.52239;EPP=26.8965;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.831776;PAO=0;PQA=0;PQR=0;PRO=0;QA=441;QR=4224;RO=107;RPL=0;RPP=26.8965;RPPR=235.358;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:40,11:40:1584:11:441:-24.6932,0,-127.449 0/0:20:20,0:20:765:0:0:0,-6.0206,-69.1651 0/0:47:47,0:47:1875:0:0:0,-14.1484,-168.953 dDocent_Contig_4463 90 . G A 5889.5 . AB=0.55102;ABP=12.9813;AC=1;AF=0.25;AN=4;AO=243;CIGAR=1X;DP=446;DPB=446;DPRA=88.2;EPP=530.678;EPPR=443.819;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.945813;PAO=0;PQA=0;PQR=0;PRO=0;QA=8030;QR=6714;RO=203;RPL=243;RPP=530.678;RPPR=443.819;RPR=0;RUN=1;SAF=243;SAP=530.678;SAR=0;SRF=203;SRP=443.819;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:441:198,243:198:6543:243:8030:-590.047,0,-456.265 ./.:.:.:.:.:.:.:. 0/0:5:5,0:5:171:0:0:0,-1.50515,-15.7266 dDocent_Contig_4465 86 . A G 230.285 . AB=0.392857;ABP=5.80219;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=28;DPB=28;DPRA=0;EPP=26.8965;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=378;QR=574;RO=17;RPL=11;RPP=26.8965;RPPR=39.9253;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:6,6:6:196:6:205:-15.1728,0,-14.3488 0/1:9:5,4:5:169:4:138:-10.0512,0,-12.8337 0/1:7:6,1:6:209:1:35:-1.39142,0,-17.0438 dDocent_Contig_4467 201 . G A 46.0004 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=18;DPB=18;DPRA=0.571429;EPP=7.35324;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=74;QR=590;RO=16;RPL=2;RPP=7.35324;RPPR=37.7539;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:222:0:0:0,-1.80618,-20.3381 0/0:8:8,0:8:296:0:0:0,-2.40824,-26.9942 0/1:4:2,2:2:72:2:74:-5.82176,0,-5.63252 dDocent_Contig_4468 28 . A C 58.2686 . AB=0.148148;ABP=32.0437;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=79;DPB=79;DPRA=3.09091;EPP=13.8677;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=2955;RO=74;RPL=0;RPP=13.8677;RPPR=163.699;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:23,4:23:913:4:161:-6.74767,0,-74.3476 0/0:41:40,1:40:1610:1:41:0,-8.24766,-141.035 0/0:11:11,0:11:432:0:0:0,-3.31133,-39.2331 dDocent_Contig_4469 20 . A C 2544.39 . AB=0.604317;ABP=16.1485;AC=3;AF=0.5;AN=6;AO=84;CIGAR=1X3M1X1M1X;DP=139;DPB=139;DPRA=0;EPP=185.414;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=59.6548;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.988095;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3334;QR=2168;RO=55;RPL=0;RPP=185.414;RPPR=122.441;RPR=84;RUN=1;SAF=84;SAP=185.414;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:56:21,35:21:835:35:1385:-107.124,0,-58.6108 0|1:43:15,28:15:580:28:1110:-87.2477,0,-39.5941 0|1:40:19,21:19:753:21:839:-63.7839,0,-56.0537 dDocent_Contig_4470 8 . C T 364.777 . AB=0.315789;ABP=8.61041;AC=0;AF=0;AN=6;AO=6;CIGAR=1X1M1X;DP=34;DPB=34;DPRA=4.75;EPP=16.0391;EPPR=35.5824;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=233;QR=579;RO=15;RPL=0;RPP=16.0391;RPPR=35.5824;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:11:9,0,2:9:345:0,2:0,78:-4.09214,-6.80141,-35.1124,0,-28.6995,-28.0974 0|0:4:0,0,4:0:0:0,4:0,158:-14.6005,-14.6005,-14.6005,-1.20412,-1.20412,0 0|0:19:6,6,7:6:234:6,7:233,266:-19.9988,-2.65526,-20.089,0,-0.091021,-17.1289 dDocent_Contig_4471 40 . A T 33.5545 . AB=0.181818;ABP=12.6832;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=19;DPB=19;DPRA=2.75;EPP=7.35324;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=58.5;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=620;RO=17;RPL=0;RPP=7.35324;RPPR=39.9253;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:9,2:9:320:2:80:-4.27517,0,-25.8183 0/0:3:3,0:3:115:0:0:0,-0.90309,-10.7241 0/0:5:5,0:5:185:0:0:0,-1.50515,-17.0068 dDocent_Contig_4472 66 . C T 36.5093 . AB=0.157895;ABP=22.325;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=30;DPB=30;DPRA=0.863636;EPP=9.52472;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.962963;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1039;RO=27;RPL=3;RPP=9.52472;RPPR=61.6401;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:14,2:14:537:2:81:-2.86925,0,-43.8562 0/1:3:2,1:2:77:1:40:-3.09259,0,-6.40574 0/0:11:11,0:11:425:0:0:0,-3.31133,-38.6011 dDocent_Contig_4473 96 . C A 41.5236 . AB=0.666667;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=47;DPB=47;DPRA=0.136364;EPP=7.35324;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=66;QR=1402;RO=45;RPL=2;RPP=7.35324;RPPR=100.727;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:635:0:0:0,-6.32163,-57.4365 0/0:23:23,0:23:732:0:0:0,-6.92369,-66.1788 0/1:3:1,2:1:35:2:66:-5.36509,0,-2.59554 dDocent_Contig_4474 8 . C A 86.0253 . AB=0.363636;ABP=4.78696;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=21;DPB=21;DPRA=0.55;EPP=11.6962;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=150;QR=636;RO=17;RPL=0;RPP=11.6962;RPPR=39.9253;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:5,3:5:186:3:115:-8.31665,0,-14.6928 0/1:3:2,1:2:78:1:35:-2.59554,0,-6.50038 0/0:10:10,0:10:372:0:0:0,-3.0103,-33.8267 dDocent_Contig_4475 116 . C A 37.2924 . AB=0.2;ABP=10.8276;AC=3;AF=0.5;AN=6;AO=3;CIGAR=1X;DP=22;DPB=22;DPRA=0.5;EPP=9.52472;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.333333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=644;RO=19;RPL=0;RPP=9.52472;RPPR=44.2683;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:381:0:0:0,-3.31133,-34.6237 0/1:10:8,2:8:263:2:42:-0.978396,0,-20.981 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_4476 107 . N A 680.131 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=29;CIGAR=1X;DP=29;DPB=29;DPRA=0;EPP=15.6647;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=29.7241;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.103448;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1001;QR=0;RO=0;RPL=0;RPP=65.983;RPPR=0;RPR=29;RUN=1;SAF=21;SAP=15.6647;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:13:0,13:0:0:13:444:-33.0651,-3.91339,0 1/1:3:0,3:0:0:3:103:-5.46013,-0.90309,0 1/1:13:0,13:0:0:13:454:-29.01,-3.91339,0 dDocent_Contig_4477 36 . C T 32.4693 . AB=0.181818;ABP=12.6832;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=39;DPB=39;DPRA=0.785714;EPP=7.35324;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.864865;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=1473;RO=37;RPL=0;RPP=7.35324;RPPR=83.3548;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:199:0:0:0,-1.50515,-18.2886 0/0:23:23,0:23:914:0:0:0,-6.92369,-82.567 0/1:11:9,2:9:360:2:82:-4.46835,0,-29.4507 dDocent_Contig_4478 45 . G A 64.3551 . AB=0.181818;ABP=22.3561;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=29;DPB=29;DPRA=1.57143;EPP=11.6962;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=986;RO=25;RPL=0;RPP=11.6962;RPPR=57.2971;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:16,3:16:622:3:121:-5.56042,0,-50.5946 0/0:7:7,0:7:282:0:0:0,-2.10721,-25.7526 0/1:3:2,1:2:82:1:41:-3.19148,0,-6.87659 dDocent_Contig_4480 12 . A C 1197.7 . AB=0.539474;ABP=4.03889;AC=3;AF=0.5;AN=6;AO=41;CIGAR=1X;DP=76;DPB=76;DPRA=0;EPP=92.0407;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1615;QR=1359;RO=35;RPL=0;RPP=92.0407;RPPR=79.0118;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:8,21:8:315:21:843:-67.4541,0,-19.9846 0/1:21:8,13:8:312:13:507:-39.6521,0,-22.1174 0/1:26:19,7:19:732:7:265:-16.3806,0,-58.3676 dDocent_Contig_4481 33 . C T 48.8658 . AB=0.4;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=22;DPB=22;DPRA=1.7;EPP=9.52472;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=0.947368;PAO=0;PQA=0;PQR=0;PRO=0;QA=111;QR=768;RO=19;RPL=0;RPP=9.52472;RPPR=44.2683;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:5:3,2:3:118:2:77:-5.80368,0,-9.49705 0/0:12:11,1:11:447:1:34:0,-0.213449,-37.187 0/0:5:5,0:5:203:0:0:0,-1.50515,-18.6531 dDocent_Contig_4482 49 . G T 115.768 . AB=0.170732;ABP=41.6201;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=61;DPB=61;DPRA=1.025;EPP=18.2106;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=2115;RO=54;RPL=0;RPP=18.2106;RPPR=120.27;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:27,6:27:1076:6:242:-12.2233,0,-87.1983 0/1:8:7,1:7:256:1:40:-1.58744,0,-20.9735 0/0:20:20,0:20:783:0:0:0,-6.0206,-70.7869 dDocent_Contig_4483 42 . G T 182.091 . AB=0.333333;ABP=8.07707;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=56;DPB=56;DPRA=1.2;EPP=18.2106;EPPR=92.7497;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.918367;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=1937;RO=49;RPL=0;RPP=18.2106;RPPR=77.5051;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=47;SRP=92.7497;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:401:0:0:0,-3.0103,-36.4499 0/0:25:25,0:25:990:0:0:0,-7.52575,-89.4006 0/1:21:14,7:14:546:7:282:-19.431,0,-43.1538 dDocent_Contig_4484 156 . T A 42.2143 . AB=0.4;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=31;DPB=31;DPRA=0.384615;EPP=7.35324;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=960;RO=29;RPL=0;RPP=7.35324;RPPR=65.983;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:5:3,2:3:105:2:70:-5.14218,0,-8.29101 0/0:19:19,0:19:620:0:0:0,-5.71957,-56.1096 0/0:7:7,0:7:235:0:0:0,-2.10721,-21.4786 dDocent_Contig_4486 17 . A G 140.827 . AB=0.205882;ABP=28.557;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=40;DPB=40;DPRA=2.83333;EPP=18.2106;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=276;QR=1302;RO=33;RPL=0;RPP=18.2106;RPPR=74.6689;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:16,6:16:634:6:236:-14.9896,0,-50.7747 0/1:12:11,1:11:427:1:40:-0.383319,0,-35.1708 0/0:6:6,0:6:241:0:0:0,-1.80618,-22.0658 dDocent_Contig_4487 11 . C T 103.665 . AB=0.4;ABP=3.87889;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=69;DPB=69;DPRA=0.338983;EPP=11.6962;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.923077;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=2612;RO=65;RPL=0;RPP=11.6962;RPPR=144.156;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1241:0:0:0,-9.33193,-111.963 0/0:28:28,0:28:1128:0:0:0,-8.42884,-101.804 0/1:10:6,4:6:243:4:158:-11.5884,0,-19.2377 dDocent_Contig_4488 7 . T A 288.274 . AB=0.15;ABP=173.254;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=160;DPB=160;DPRA=0;EPP=55.1256;EPPR=298.331;GTI=0;LEN=1;MEANALT=1;MQM=59.4167;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.985294;PAO=0;PQA=0;PQR=0;PRO=0;QA=884;QR=5181;RO=136;RPL=0;RPP=55.1256;RPPR=298.331;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=136;SRP=298.331;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:49,7:49:1852:7:259:-6.80702,0,-150.075 0/1:73:59,14:59:2261:14:508:-24.0722,0,-181.735 0/1:31:28,3:28:1068:3:117:-1.57845,0,-87.0925 dDocent_Contig_4489 197 . T G 158.187 . AB=0.4;ABP=4.31318;AC=1;AF=0.25;AN=4;AO=6;CIGAR=1X;DP=26;DPB=26;DPRA=1.36364;EPP=16.0391;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=744;RO=20;RPL=6;RPP=16.0391;RPPR=46.4397;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:9,6:9:324:6:234:-16.9157,0,-24.9844 ./.:.:.:.:.:.:.:. 0/0:11:11,0:11:420:0:0:0,-3.31133,-38.1523 dDocent_Contig_4490 7 . T C 490.939 . AB=0.191176;ABP=59.3408;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=2M1X12M;DP=68;DPB=69.2667;DPRA=0;EPP=31.2394;EPPR=42.0968;GTI=0;LEN=1;MEANALT=5.33333;MQM=55.3846;MQMR=60;NS=3;NUMALT=6;ODDS=0;PAIRED=0.307692;PAIREDR=0.944444;PAO=0;PQA=0;PQR=0;PRO=0;QA=507;QR=709;RO=18;RPL=0;RPP=31.2394;RPPR=42.0968;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:33:10,2,3,5,4,4,5:10:393:2,3,5,4,4,5:77,117,196,156,156,195:-13.1091,-9.79739,-41.5228,-6.50163,-32.5073,-37.9263,0,-26.0061,-22.7104,-30.8229,-3.40344,-29.409,-26.1135,-19.6122,-34.5269,-3.3765,-29.3822,-26.0866,-19.5853,-22.9883,-34.5,-0.0897539,-26.0956,-22.8,-16.2987,-19.7018,-19.6749,-30.9125 0|1:15:1,0,0,5,1,5,2:1:40:0,0,5,1,5,2:0,0,196,34,195,77:-28.5608,-28.8619,-32.1579,-28.8619,-32.1579,-32.1579,-12.7394,-16.0364,-16.0364,-14.5312,-26.1073,-29.4032,-29.4032,-13.2831,-29.1022,-12.8297,-16.1265,-16.1265,0,-13.3734,-14.6214,-22.5395,-25.8357,-25.8357,-9.71347,-23.0815,-9.80391,-25.2336 0|0:20:7,2,0,4,2,4,0:7:276:2,0,4,2,4,0:78,0,159,77,156,0:-10.9885,-6.68504,-28.7947,-13.0957,-29.3968,-35.807,0,-16.3034,-22.7139,-21.5098,-7.12157,-23.4217,-29.8316,-16.739,-29.2295,-0.352246,-16.6541,-23.0642,-9.97067,-17.0897,-21.8601,-13.0957,-29.3968,-35.807,-22.7139,-29.8316,-23.0642,-35.807 dDocent_Contig_4491 178 . C G 136.384 . AB=0.384615;ABP=4.51363;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=21;DPB=21;DPRA=3.25;EPP=13.8677;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=638;RO=16;RPL=5;RPP=13.8677;RPPR=37.7539;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:8,5:8:318:5:201:-14.5577,0,-25.0734 0/0:2:2,0:2:80:0:0:0,-0.60206,-7.59179 0/0:6:6,0:6:240:0:0:0,-1.80618,-21.9757 dDocent_Contig_4492 21 . T A 115.654 . AB=0.170213;ABP=47.41;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=67;DPB=67;DPRA=1.175;EPP=20.3821;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=303;QR=2350;RO=59;RPL=0;RPP=20.3821;RPPR=131.127;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:13,5:13:517:5:186:-11.6809,0,-41.4564 0/1:29:26,3:26:1025:3:117:-2.17996,0,-83.8127 0/0:20:20,0:20:808:0:0:0,-6.0206,-73.0355 dDocent_Contig_4493 107 . N C 281.207 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=22.5536;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=296;QR=0;RO=0;RPL=0;RPP=22.5536;RPPR=0;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 1/1:6:0,6:0:0:6:193:-17.6875,-1.80618,0 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 dDocent_Contig_4494 9 . A C 445.167 . AB=0.0521739;ABP=403.656;AC=0;AF=0;AN=6;AO=12;CIGAR=2X3M;DP=230;DPB=230;DPRA=0;EPP=29.068;EPPR=237.529;GTI=0;LEN=1;MEANALT=7.33333;MQM=45.1667;MQMR=56.9167;NS=3;NUMALT=6;ODDS=0;PAIRED=1;PAIREDR=0.962963;PAO=0;PQA=0;PQR=0;PRO=0;QA=467;QR=4221;RO=108;RPL=0;RPP=29.068;RPPR=237.529;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:76:29,5,4,25,4,1,5:29:1131:5,4,25,4,1,5:187,157,225,147,28,179:-5.51267,0,-90.7039,-2.2721,-80.2484,-93.2748,-7.80421,-85.7304,-87.9982,-92.4267,-2.8805,-80.8563,-83.1262,-88.6065,-93.8826,-12.0294,-89.9976,-92.2674,-97.743,-92.8752,-103.926,-0.783578,-78.7613,-81.0312,-86.5138,-81.6391,-90.7803,-91.4867 0|0:90:44,9,5,5,4,9,10:44:1729:9,5,5,4,9,10:359,200,44,146,359,400:-17.9633,-3.90667,-142.992,-16.065,-130.561,-156.351,-30.0089,-144.487,-156.641,-170.276,-20.0295,-134.523,-146.678,-160.604,-160.615,-2.56909,-117.07,-129.225,-143.152,-133.188,-141.657,0,-114.501,-126.656,-140.583,-130.619,-113.165,-138.787 0|0:64:35,5,2,3,5,2,11:35:1361:5,2,3,5,2,11:201,79,26,200,80,443:-24.7328,-20.1975,-129.697,-29.2589,-125.194,-139.659,-34.5949,-130.512,-139.569,-144.674,-20.1239,-116.062,-125.12,-130.438,-129.624,-28.8827,-124.819,-133.877,-139.194,-124.745,-139.284,0,-95.9544,-105.013,-110.333,-95.8809,-104.638,-107.71 dDocent_Contig_4495 69 . G T 48.6927 . AB=0.25;ABP=9.52472;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=24;DPB=24;DPRA=2;EPP=9.52472;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=726;RO=21;RPL=3;RPP=9.52472;RPPR=48.6112;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:277:0:0:0,-2.40824,-25.267 0/0:4:4,0:4:138:0:0:0,-1.20412,-12.7604 0/1:12:9,3:9:311:3:104:-6.09073,0,-24.7129 dDocent_Contig_4496 46 . G C 305.658 . AB=0.413793;ABP=4.88226;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=50;DPB=50;DPRA=5.75;EPP=23.2217;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=480;QR=1289;RO=37;RPL=1;RPP=23.2217;RPPR=83.3548;RPR=12;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:17,12:17:586:12:443:-31.486,0,-44.3336 0/0:17:16,1:16:564:1:37:0,-1.41968,-47.3866 0/0:4:4,0:4:139:0:0:0,-1.20412,-12.8527 dDocent_Contig_4497 122 . G T 115.786 . AB=0.333333;ABP=7.35324;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=33;DPB=33;DPRA=0.6;EPP=16.0391;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=207;QR=902;RO=27;RPL=0;RPP=16.0391;RPPR=61.6401;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:10,2:10:329:2:68:-2.84557,0,-26.3163 0/0:15:15,0:15:509:0:0:0,-4.51545,-46.1328 0/1:6:2,4:2:64:4:139:-11.0465,0,-4.27219 dDocent_Contig_4499 71 . A T 737.632 . AB=0.519231;ABP=3.17734;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1X;DP=52;DPB=52;DPRA=0;EPP=61.6401;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1023;QR=956;RO=25;RPL=27;RPP=61.6401;RPPR=57.2971;RPR=0;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:3,9:3:115:9:348:-28.0653,0,-7.11002 0/1:17:11,6:11:428:6:231:-16.0375,0,-33.7503 0/1:23:11,12:11:413:12:444:-33.3771,0,-30.595 dDocent_Contig_4500 29 . A C 385.498 . AB=0.482759;ABP=3.08518;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=36;DPB=36;DPRA=2.07143;EPP=33.4109;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=543;QR=842;RO=22;RPL=0;RPP=33.4109;RPPR=50.7827;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:271:0:0:0,-2.10721,-24.7547 0/1:19:11,8:11:417:8:313:-22.8133,0,-32.1577 0/1:10:4,6:4:154:6:230:-18.0552,0,-11.2215 dDocent_Contig_4502 33 . C T 339.421 . AB=0.206897;ABP=67.9298;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=102;DPB=102;DPRA=2.9;EPP=42.0968;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=686;QR=3371;RO=84;RPL=0;RPP=42.0968;RPPR=185.414;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:25,5:25:1004:5:191:-8.52636,0,-81.6249 0/1:57:44,13:44:1760:13:495:-27.7345,0,-141.462 0/0:15:15,0:15:607:0:0:0,-4.51545,-54.9683 dDocent_Contig_4503 35 . G T 60.0938 . AB=0.222222;ABP=15.074;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=19;DPB=19;DPRA=9;EPP=11.6962;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=137;QR=583;RO=15;RPL=0;RPP=11.6962;RPPR=35.5824;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:6,3:6:230:3:103:-6.90002,0,-18.357 0/1:9:8,1:8:312:1:34:-0.689641,0,-25.7345 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_4504 14 . A T 124.55 . AB=0.222222;ABP=9.04217;AC=1;AF=0.25;AN=4;AO=2;CIGAR=1X2M1X;DP=21;DPB=21;DPRA=0;EPP=7.35324;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=594;RO=15;RPL=0;RPP=7.35324;RPPR=35.5824;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:12:8,0,4:8:320:0,4:0,148:-10.0674,-12.4757,-38.8562,0,-26.7602,-25.5561 0|1:9:7,2,0:7:274:2,0:80,0:-4.8823,0,-22.3178,-6.98951,-22.9199,-29.5117 .:.:.:.:.:.:.:. dDocent_Contig_4505 77 . T C 184.335 . AB=0.444444;ABP=3.49285;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=30;DPB=30;DPRA=0.75;EPP=20.3821;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=283;QR=796;RO=22;RPL=8;RPP=20.3821;RPPR=50.7827;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:4,6:4:132:6:209:-16.1346,0,-9.19562 0/1:8:6,2:6:234:2:74:-4.61764,0,-19.0229 0/0:12:12,0:12:430:0:0:0,-3.61236,-39.0389 dDocent_Contig_4508 17 . A C 473.488 . AB=0.551724;ABP=3.68421;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X3M;DP=41;DPB=41;DPRA=1.20833;EPP=37.7539;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=638;QR=905;RO=23;RPL=0;RPP=37.7539;RPPR=52.9542;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:18:3,2,13:3:116:2,13:72,516:-41.6064,-36.6409,-45.5649,0,-3.68113,-5.63054 0|0:12:12,0,0:12:476:0,0:0,0:0,-3.61236,-43.1917,-3.61236,-43.1917,-43.1917 0|1:11:8,0,3:8:313:0,3:0,122:-8.06116,-10.4694,-36.1937,0,-26.1263,-25.2232 dDocent_Contig_4509 60 . C T 515.554 . AB=0.68;ABP=10.0459;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=33;DPB=33;DPRA=1.5625;EPP=39.9253;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=667;QR=648;RO=16;RPL=17;RPP=39.9253;RPPR=37.7539;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:7,7:7:282:7:278:-21.1759,0,-21.5377 0/0:8:8,0:8:325:0:0:0,-2.40824,-29.6196 0/1:11:1,10:1:41:10:389:-32.0497,0,-0.783237 dDocent_Contig_4510 140 . T C 55.0303 . AB=0.3;ABP=6.48466;AC=1;AF=0.25;AN=4;AO=3;CIGAR=1X;DP=15;DPB=15;DPRA=2;EPP=9.52472;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=103;QR=406;RO=12;RPL=0;RPP=9.52472;RPPR=29.068;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=29.068;SRR=12;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:10:7,3:7:241:3:103:-6.59967,0,-19.0161 0/0:5:5,0:5:165:0:0:0,-1.50515,-15.1751 dDocent_Contig_4512 169 . C A 38.4898 . AB=0.222222;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=30;DPB=30;DPRA=0.857143;EPP=7.35324;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=1049;RO=28;RPL=2;RPP=7.35324;RPPR=63.8115;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:615:0:0:0,-5.11751,-55.6652 0/0:4:4,0:4:158:0:0:0,-1.20412,-14.6 0/1:9:7,2:7:276:2:82:-5.07041,0,-22.4977 dDocent_Contig_4513 10 . G T 1618.18 . AB=0.0740741;ABP=45.5551;AC=0;AF=0;AN=6;AO=2;CIGAR=1X1M1X1M1X;DP=81;DPB=81;DPRA=0;EPP=7.35324;EPPR=57.2971;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=972;RO=25;RPL=0;RPP=7.35324;RPPR=57.2971;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:26:10,0,16:10:386:0,16:0,630:-49.2099,-52.2202,-83.9165,0,-32.0849,-27.2684 0|0:27:9,2,16:9:348:2,16:81,620:-48.2092,-44.2374,-72.2194,0,-21.887,-23.753 0|0:28:6,0,22:6:238:0,22:0,847:-68.1153,-69.9215,-89.5161,0,-19.9883,-13.3657 dDocent_Contig_4515 58 . A G 152.245 . AB=0.142857;ABP=41.7866;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X3M1X;DP=43;DPB=43;DPRA=2.1875;EPP=13.8677;EPPR=72.4974;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.96875;PAO=0;PQA=0;PQR=0;PRO=0;QA=182;QR=1215;RO=32;RPL=5;RPP=13.8677;RPPR=72.4974;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:11:6,1,4:6:237:1,4:35,155:-10.9559,-9.92175,-29.1279,0,-16.6997,-18.3369 0|1:24:18,4,1:18:703:4,1:147,38:-6.58733,0,-56.5954,-8.88802,-54.6835,-66.396 0|0:8:8,0,0:8:275:0,0:0,0:0,-2.40824,-25.0782,-2.40824,-25.0782,-25.0782 dDocent_Contig_4516 15 . G A 318.411 . 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AB=0.3;ABP=9.95901;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=62;DPB=62;DPRA=0.952381;EPP=16.0391;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=2214;RO=56;RPL=0;RPP=16.0391;RPPR=124.613;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:37,0:37:1481:0:0:0,-11.1381,-133.537 0/0:5:5,0:5:198:0:0:0,-1.50515,-18.195 0/1:20:14,6:14:535:6:242:-16.1363,0,-42.455 dDocent_Contig_4518 9 . T A 1135.9 . AB=0.0555556;ABP=64.7766;AC=3;AF=0.5;AN=6;AO=2;CIGAR=1M2X1M2X2M1X2M;DP=111;DPB=112.273;DPRA=0;EPP=7.35324;EPPR=111.584;GTI=0;LEN=1;MEANALT=7;MQM=24;MQMR=60;NS=3;NUMALT=8;ODDS=1.38778e-17;PAIRED=0;PAIREDR=0.04;PAO=0;PQA=0;PQR=0;PRO=0;QA=48;QR=1938;RO=50;RPL=0;RPP=7.35324;RPPR=111.584;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:37:18,13,0,1,2,0,3,0,0:18:705:13,0,1,2,0,3,0,0:505,0,22,58,0,109,0,0:-36.1385,0,-54.1275,-41.557,-58.0409,-99.5444,-40.1572,-56.6394,-98.1403,-97.8393,-37.4923,-53.9742,-95.4745,-94.0708,-94.8724,-41.557,-58.0409,-99.5444,-98.1403,-95.4745,-99.5444,-32.6564,-49.1416,-90.6455,-89.2418,-86.5762,-90.6455,-89.7424,-41.557,-58.0409,-99.5444,-98.1403,-95.4745,-99.5444,-90.6455,-99.5444,-41.557,-58.0409,-99.5444,-98.1403,-95.4745,-99.5444,-90.6455,-99.5444,-99.5444 0|1:36:15,9,2,2,0,2,0,3,2:15:577:9,2,2,0,2,0,3,2:331,51,44,0,48,0,45,44:-22.6313,0,-44.7811,-23.7024,-44.048,-70.5278,-24.3351,-44.6798,-68.3191,-71.1589,-27.1468,-47.4904,-71.1299,-71.761,-74.5725,-23.9739,-44.3191,-67.9587,-68.5899,-71.4007,-70.7986,-27.1468,-47.4904,-71.1299,-71.761,-74.5725,-71.4007,-74.5725,-24.8164,-45.1587,-68.7958,-69.4271,-72.2368,-69.0667,-72.2368,-71.3337,-24.3351,-44.6798,-68.3191,-68.9503,-71.761,-68.5899,-71.761,-69.4271,-71.1589 0|1:38:17,20,0,0,0,0,0,0,0:17:656:20,0,0,0,0,0,0,0:776,0,0,0,0,0,0,0:-58.5366,0,-48.024,-63.6541,-54.0446,-117.527,-63.6541,-54.0446,-117.527,-117.527,-63.6541,-54.0446,-117.527,-117.527,-117.527,-63.6541,-54.0446,-117.527,-117.527,-117.527,-117.527,-63.6541,-54.0446,-117.527,-117.527,-117.527,-117.527,-117.527,-63.6541,-54.0446,-117.527,-117.527,-117.527,-117.527,-117.527,-117.527,-63.6541,-54.0446,-117.527,-117.527,-117.527,-117.527,-117.527,-117.527,-117.527 dDocent_Contig_4519 38 . A G 48.7893 . AB=0.119048;ABP=55.9529;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=112;DPB=112;DPRA=1.2;EPP=13.8677;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=4189;RO=107;RPL=0;RPP=13.8677;RPPR=235.358;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:40,0:40:1559:0:0:0,-12.0412,-140.559 0/0:30:30,0:30:1154:0:0:0,-9.0309,-104.144 0/1:42:37,5:37:1476:5:204:-6.10077,0,-120.448 dDocent_Contig_4520 28 . T A 498.76 . AB=0.365385;ABP=11.1951;AC=2;AF=0.333333;AN=6;AO=19;CIGAR=1X;DP=75;DPB=75;DPRA=1.13043;EPP=44.2683;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.982143;PAO=0;PQA=0;PQR=0;PRO=0;QA=746;QR=2222;RO=56;RPL=0;RPP=44.2683;RPPR=124.613;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:18,7:18:721:7:265:-16.6812,0,-57.6909 0/0:23:23,0:23:909:0:0:0,-6.92369,-82.1209 0/1:27:15,12:15:592:12:481:-35.5136,0,-45.4909 dDocent_Contig_4521 42 . A G 30.768 . AB=0.121212;ABP=44.1367;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X2M1X1M1X1M2X;DP=54;DPB=54;DPRA=3.14286;EPP=11.6962;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=1932;RO=50;RPL=0;RPP=11.6962;RPPR=111.584;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:6:6,0:6:229:0:0:0,-1.80618,-20.9748 0|0:15:15,0:15:578:0:0:0,-4.51545,-52.3601 0|1:33:29,4:29:1125:4:154:-4.29819,0,-91.6106 dDocent_Contig_4522 11 . G A 59.2959 . AB=0.111111;ABP=62.1226;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1M8I3M3X2M;DP=75;DPB=81.2222;DPRA=0;EPP=16.0391;EPPR=98.5551;GTI=0;LEN=1;MEANALT=2.66667;MQM=56;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.833333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=235;QR=1673;RO=44;RPL=0;RPP=16.0391;RPPR=98.5551;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:12,2:12:454:2:79:-2.8958,0,-36.6219 0|0:30:19,1:19:718:1:40:0,-2.40585,-61.0785 0|1:26:13,3:13:501:3:116:-5.34793,0,-40.2494 dDocent_Contig_4523 10 . G T 31.1298 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X1M1X;DP=38;DPB=38;DPRA=0.617647;EPP=11.6962;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=18.5;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=1330;RO=34;RPL=0;RPP=11.6962;RPPR=76.8404;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:17:17,0:17:663:0:0:0,-5.11751,-60.0035 0|1:6:3,3:3:121:3:120:-4.33449,0,-9.47402 0|0:15:14,1:14:546:1:39:0,-3.71574,-48.6815 dDocent_Contig_4524 10 . G A 1379.3 . AB=0.661765;ABP=18.4661;AC=3;AF=0.5;AN=6;AO=45;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=100.727;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1790;QR=902;RO=23;RPL=0;RPP=100.727;RPPR=52.9542;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:6,16:6:236:16:636:-50.9532,0,-14.9889 0/1:28:14,14:14:546:14:559:-42.2249,0,-41.0544 0/1:18:3,15:3:120:15:595:-48.4682,0,-5.76915 dDocent_Contig_4525 16 . C T 41.5315 . AB=0.25;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=29;DPB=29;DPRA=1.57143;EPP=9.52472;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1026;RO=26;RPL=0;RPP=9.52472;RPPR=59.4686;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:269:0:0:0,-2.10721,-24.5688 0/0:14:13,1:13:513:1:40:0,-0.218741,-42.5205 0/1:8:6,2:6:244:2:82:-5.37144,0,-19.9304 dDocent_Contig_4526 12 . A T 135.62 . AB=0.242424;ABP=22.0271;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=68;DPB=68;DPRA=1.88571;EPP=20.3821;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.95;PAO=0;PQA=0;PQR=0;PRO=0;QA=271;QR=2319;RO=60;RPL=0;RPP=20.3821;RPPR=133.299;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:925:0:0:0,-7.22472,-83.5645 0/0:11:11,0:11:424:0:0:0,-3.31133,-38.5117 0/1:33:25,8:25:970:8:271:-14.7838,0,-77.6748 dDocent_Contig_4527 78 . T G 706.741 . AB=0.674419;ABP=14.3727;AC=3;AF=0.5;AN=6;AO=29;CIGAR=1X;DP=43;DPB=43;DPRA=0;EPP=65.983;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=958;QR=424;RO=14;RPL=29;RPP=65.983;RPPR=33.4109;RPR=0;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:6,4:6:194:4:132:-9.19605,0,-14.7684 0/1:15:3,12:3:63:12:402:-31.988,0,-1.36323 0/1:18:5,13:5:167:13:424:-33.0556,0,-9.94084 dDocent_Contig_4528 18 . C T 41.4484 . AB=0.142857;ABP=34.0313;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=63;DPB=63;DPRA=1.6;EPP=11.6962;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=146;QR=2302;RO=59;RPL=0;RPP=11.6962;RPPR=131.127;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:24,4:24:923:4:146:-5.06563,0,-74.9518 0/0:23:23,0:23:902:0:0:0,-6.92369,-81.4911 0/0:12:12,0:12:477:0:0:0,-3.61236,-43.2811 dDocent_Contig_4530 9 . T A 378.951 . AB=0.25;ABP=42.0968;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X;DP=72;DPB=72;DPRA=0;EPP=42.0968;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=691;QR=2031;RO=54;RPL=0;RPP=42.0968;RPPR=120.27;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:12,2:12:446:2:75:-2.90592,0,-36.2676 0/1:25:22,3:22:810:3:113:-3.01322,0,-65.6922 0/1:33:20,13:20:775:13:503:-35.6847,0,-60.1444 dDocent_Contig_4531 7 . T A 581.254 . AB=0.363636;ABP=13.6703;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X1M1X;DP=66;DPB=66;DPRA=0;EPP=55.1256;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=896;QR=1589;RO=42;RPL=0;RPP=55.1256;RPPR=94.2121;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:44:28,16:28:1064:16:597:-40.8218,0,-82.8237 0|1:17:11,6:11:410:6:223:-15.3106,0,-32.1302 0|1:5:3,2:3:115:2:76:-5.70966,0,-9.21988 dDocent_Contig_4532 30 . C T 115.829 . AB=0.277778;ABP=10.7311;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=54;DPB=54;DPRA=1;EPP=13.8677;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=1942;RO=49;RPL=0;RPP=13.8677;RPPR=109.412;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:13,5:13:517:5:195:-12.5037,0,-41.4575 0/0:10:10,0:10:391:0:0:0,-3.0103,-35.5434 0/0:26:26,0:26:1034:0:0:0,-7.82678,-93.354 dDocent_Contig_4533 39 . C T 143.918 . AB=0.241379;ABP=19.8579;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=45;DPB=45;DPRA=0.90625;EPP=5.80219;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=54.5714;MQMR=58.2895;NS=3;NUMALT=1;ODDS=0;PAIRED=0.714286;PAIREDR=0.894737;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=1531;RO=38;RPL=0;RPP=18.2106;RPPR=85.5263;RPR=7;RUN=1;SAF=5;SAP=5.80219;SAR=2;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:642:0:0:0,-4.81648,-58.1141 0/1:12:9,3:9:365:3:119:-7.04468,0,-29.5834 0/1:17:13,4:13:524:4:160:-9.66592,0,-40.954 dDocent_Contig_4534 45 . G T 45.9317 . AB=0.1875;ABP=16.582;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=40;DPB=40;DPRA=1.33333;EPP=9.52472;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=1397;RO=37;RPL=0;RPP=9.52472;RPPR=83.3548;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:378:0:0:0,-3.0103,-34.3689 0/0:14:14,0:14:517:0:0:0,-4.21442,-46.8621 0/1:16:13,3:13:502:3:114:-5.815,0,-40.7047 dDocent_Contig_4536 110 . T C 99.9097 . AB=0.113636;ABP=60.0608;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X1M;DP=64;DPB=64;DPRA=1.1;EPP=13.8677;EPPR=94.2121;GTI=0;LEN=1;MEANALT=4;MQM=47.2;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=173;QR=1377;RO=42;RPL=0;RPP=13.8677;RPPR=94.2121;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=94.2121;SRR=42;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:20:16,1,2,0:16:533:1,2,0:30,40,0:0,-3.87334,-46.853,-2.48863,-44.8472,-45.1845,-4.81648,-47.154,-45.7866,-48.0953 0|1:19:12,3,2,1:12:398:3,2,1:82,64,33:-2.83739,0,-31.3154,-1.28776,-27.0692,-32.9203,-3.78189,-29.557,-30.8602,-35.7097 0|1:25:14,5,1,4:14:446:5,1,4:172,30,140:-9.45923,0,-34.4003,-11.7113,-33.9387,-47.3107,-2.42866,-24.6615,-36.3701,-37.133 dDocent_Contig_4537 163 . T C 78.9007 . AB=0.235294;ABP=13.3567;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=44;DPB=44;DPRA=1.25926;EPP=11.6962;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=1570;RO=40;RPL=4;RPP=11.6962;RPPR=89.8692;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=89.8692;SRR=40;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:394:0:0:0,-3.0103,-35.8172 0/0:17:17,0:17:656:0:0:0,-5.11751,-59.3577 0/1:17:13,4:13:520:4:154:-9.11191,0,-42.0274 dDocent_Contig_4538 11 . T C 4017.62 . AB=0.292553;ABP=143.555;AC=3;AF=0.5;AN=6;AO=110;CIGAR=1X4M;DP=376;DPB=380.4;DPRA=0;EPP=241.872;EPPR=278.787;GTI=0;LEN=1;MEANALT=4.66667;MQM=57.2;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0.963636;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4429;QR=5006;RO=127;RPL=0;RPP=241.872;RPPR=278.787;RPR=110;RUN=1;SAF=110;SAP=241.872;SAR=0;SRF=127;SRP=278.787;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:147:62,41,10,22,11:62:2444:41,10,22,11:1627,398,887,432:-115.247,0,-188.729,-101.14,-168.3,-299.202,-60.8509,-128.011,-229.152,-255.301,-98.3895,-165.549,-266.69,-226.401,-296.15 0|1:100:15,11,6,60,8:15:591:11,6,60,8:441,239,2410,318:-193.615,-161.796,-207.105,-178.45,-190.735,-225.264,0,-12.2838,-28.9384,-30.5575,-171.95,-184.235,-200.889,-22.4385,-218.162 0|1:129:50,34,3,28,12:50:1971:34,3,28,12:1356,118,1132,482:-96.6164,0,-151.918,-101.962,-152.447,-263.214,-18.971,-69.4557,-171.42,-172.697,-71.9498,-122.435,-224.398,-141.407,-230.492 dDocent_Contig_4539 9 . T A 460.28 . AB=0.132075;ABP=65.3275;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X1M;DP=53;DPB=53;DPRA=0;EPP=18.2106;EPPR=53.2759;GTI=0;LEN=1;MEANALT=2;MQM=54.5714;MQMR=58.1481;NS=3;NUMALT=2;ODDS=0;PAIRED=0.714286;PAIREDR=0.740741;PAO=0;PQA=0;PQR=0;PRO=0;QA=254;QR=1051;RO=27;RPL=0;RPP=18.2106;RPPR=61.6401;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=26;SRP=53.2759;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:14:8,2,4:8:303:2,4:77,137:-8.43631,-5.32429,-28.843,0,-18.6081,-22.9169 0|1:12:7,4,1:7:275:4,1:153,39:-8.87142,0,-21.4179,-7.76272,-19.4165,-30.115 0|1:27:12,13,2:12:473:13,2:507,78:-32.437,0,-35.0064,-29.6312,-32.5086,-67.9703 dDocent_Contig_4541 26 . G A 263.346 . AB=0.277778;ABP=26.1727;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X1M1X;DP=54;DPB=54;DPRA=0;EPP=35.5824;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=35.1333;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.948718;PAO=0;PQA=0;PQR=0;PRO=0;QA=597;QR=1528;RO=39;RPL=0;RPP=35.5824;RPPR=87.6977;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:17:11,6:11:430:6:241:-14.056,0,-33.9369 0|1:11:6,5:6:232:5:197:-11.9273,0,-17.937 0|1:26:22,4:22:866:4:159:-4.06771,0,-70.4289 dDocent_Contig_4542 14 . A G 359.876 . AB=0.277778;ABP=26.1727;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=54;DPB=54;DPRA=0;EPP=35.5824;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.933333;PAIREDR=0.769231;PAO=0;PQA=0;PQR=0;PRO=0;QA=609;QR=1551;RO=39;RPL=0;RPP=35.5824;RPPR=87.6977;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:20,5:20:802:5:203:-11.1273,0,-64.9728 0/1:11:7,4:7:280:4:164:-11.8386,0,-22.2597 0/1:18:12,6:12:469:6:242:-16.7384,0,-37.1361 dDocent_Contig_4543 14 . C A 71.5787 . AB=0.15;ABP=45.5712;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=103;DPB=103;DPRA=1.26984;EPP=16.0391;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=223;QR=3838;RO=97;RPL=0;RPP=16.0391;RPPR=213.643;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:37,0:37:1458:0:0:0,-11.1381,-131.471 0/0:26:26,0:26:1029:0:0:0,-7.82678,-92.9036 0/1:40:34,6:34:1351:6:223:-8.37972,0,-109.807 dDocent_Contig_4544 116 . G A 225.051 . AB=0.111111;ABP=26.6552;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X2M1X2M1X3M1X;DP=73;DPB=73.4545;DPRA=0;EPP=7.35324;EPPR=62.7775;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=59.2381;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0.452381;PAO=4;PQA=102;PQR=8.75;PRO=0.25;QA=65;QR=1244;RO=42;RPL=0;RPP=7.35324;RPPR=94.2121;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=4;SRP=62.7775;SRR=38;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:28:15,0,1,6,4:15:450:0,1,6,4:0,23,195,107:-11.2434,-15.7589,-51.7323,-13.996,-49.9661,-49.665,0,-35.9864,-34.2206,-34.1802,-7.35064,-43.3142,-41.5487,-27.5688,-42.1101 0|1:18:15,2,0,1,0:15:431:2,0,1,0:65,0,32,0:-0.746088,0,-33.6581,-5.26154,-34.2601,-39.5105,-2.67985,-31.6798,-36.9306,-36.6296,-5.26154,-34.2601,-39.5105,-36.9306,-39.5105 0|0:27:12,0,7,6,0:12:363:0,7,6,0:0,214,193,0:-13.5457,-17.1581,-46.1921,0,-29.0408,-26.9335,-1.58242,-30.6256,-13.4703,-28.8194,-17.1581,-46.1921,-29.0408,-30.6256,-46.1921 dDocent_Contig_4546 22 . T A 30.2553 . AB=0.157895;ABP=22.325;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=25;DPB=25;DPRA=1.58333;EPP=9.52472;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=44;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.909091;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=880;RO=22;RPL=0;RPP=9.52472;RPPR=50.7827;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:6,1:6:245:1:41:-1.81637,0,-20.3223 0/0:6:6,0:6:237:0:0:0,-1.80618,-21.702 0/1:12:10,2:10:398:2:77:-3.47435,0,-32.5652 dDocent_Contig_4547 8 . A T 167.828 . AB=0.307692;ABP=11.3621;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=54;DPB=54;DPRA=1.85714;EPP=20.3821;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=280;QR=1744;RO=46;RPL=0;RPP=20.3821;RPPR=102.898;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:18,8:18:679:8:280:-17.7036,0,-53.6158 0/0:7:7,0:7:262:0:0:0,-2.10721,-23.9383 0/0:21:21,0:21:803:0:0:0,-6.32163,-72.5958 dDocent_Contig_4548 12 . C T 71.9779 . AB=0.15;ABP=45.5712;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=73;DPB=73;DPRA=0.606061;EPP=8.80089;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=53.1667;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.5;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=237;QR=2691;RO=67;RPL=0;RPP=16.0391;RPPR=148.499;RPR=6;RUN=1;SAF=5;SAP=8.80089;SAR=1;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:13,2:13:528:2:74:-2.34532,0,-43.3511 0/1:25:21,4:21:835:4:163:-7.15519,0,-67.9374 0/0:33:33,0:33:1328:0:0:0,-9.93399,-119.778 dDocent_Contig_4550 23 . T C 137.467 . AB=0.4375;ABP=3.55317;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X1M1X;DP=24;DPB=24;DPRA=1;EPP=10.7656;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=38.1429;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=275;QR=674;RO=17;RPL=0;RPP=18.2106;RPPR=39.9253;RPR=7;RUN=1;SAF=6;SAP=10.7656;SAR=1;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:8:8,0:8:309:0:0:0,-2.40824,-28.1695 0|1:9:7,2:7:284:2:82:-5.03025,0,-23.2245 0|1:7:2,5:2:81:5:193:-11.0351,0,-5.57852 dDocent_Contig_4551 7 . T C 608.719 . AB=0.389831;ABP=9.23028;AC=2;AF=0.333333;AN=6;AO=23;CIGAR=1X3M1I1M2X4M3X4M2X1M1D3M1X;DP=59;DPB=56.1923;DPRA=0;EPP=52.9542;EPPR=53.2759;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=56.4444;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.925926;PAO=0;PQA=0;PQR=0;PRO=0;QA=881;QR=1050;RO=27;RPL=0;RPP=52.9542;RPPR=61.6401;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=26;SRP=53.2759;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:8:3,0,2,3:3:118:0,2,3:0,73,116:-5.34065,-6.24374,-15.9832,-0.240326,-10.0102,-9.40815,0,-9.72374,-3.77075,-8.82065 0|1:33:14,0,15,0:14:545:0,15,0:0,571,0:-42.6714,-46.8858,-87.0837,0,-40.2318,-35.7164,-46.8858,-87.0837,-40.2318,-87.0837 0|1:18:10,2,6,0:10:387:2,6,0:79,237,0:-16.5004,-13.2004,-44.3828,0,-25.479,-29.9854,-19.5107,-44.9849,-31.7916,-51.2973 dDocent_Contig_4552 6 . C T 84.3148 . AB=0.222222;ABP=21.1059;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=47;DPB=47;DPRA=2.7;EPP=16.0391;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=35.1667;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.902439;PAO=0;PQA=0;PQR=0;PRO=0;QA=214;QR=1596;RO=41;RPL=0;RPP=16.0391;RPPR=92.0407;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3,0:3:117:0:0:0,-0.90309,-10.9104 0/0:17:17,0:17:662:0:0:0,-5.11751,-59.9171 0/1:27:21,6:21:817:6:214:-9.6526,0,-65.7271 dDocent_Contig_4553 9 . T C 33.118 . AB=0.129032;ABP=40.0654;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=150;DPB=150;DPRA=0.521008;EPP=11.6962;EPPR=320.045;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.280822;PAO=0;PQA=0;PQR=0;PRO=0;QA=150;QR=5570;RO=146;RPL=0;RPP=11.6962;RPPR=320.045;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=146;SRP=320.045;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:47:47,0:47:1789:0:0:0,-14.1484,-161.264 0/1:31:27,4:27:1016:4:150:-4.53344,0,-82.4157 0/0:72:72,0:72:2765:0:0:0,-21.6742,-249.032 dDocent_Contig_4554 98 . N T 53130.8 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=1555;CIGAR=1X6I9X2I1M;DP=1588;DPB=2743.73;DPRA=0;EPP=3379.65;EPPR=0;GTI=0;LEN=1;MEANALT=5.66667;MQM=59.9717;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.0938907;PAIREDR=0;PAO=15;PQA=587;PQR=0;PRO=0;QA=59089;QR=0;RO=0;RPL=1555;RPP=3379.65;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=3379.65;SAR=1555;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:558:0,551:0:0:551:20999:-1888.45,-165.868,0 1|1:688:0,675:0:0:675:25760:-2315.24,-203.195,0 1|1:342:0,329:0:0:329:12330:-1108.92,-99.0389,0 dDocent_Contig_4555 59 . C T 277.412 . AB=0.245902;ABP=37.2199;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=61;DPB=61;DPRA=0;EPP=35.5824;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=542;QR=1788;RO=46;RPL=15;RPP=35.5824;RPPR=102.898;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:21,6:21:812:6:235:-13.3941,0,-65.269 0/1:10:6,4:6:239:4:140:-9.93147,0,-18.8741 0/1:24:19,5:19:737:5:167:-8.13231,0,-59.4217 dDocent_Contig_4557 110 . C T 249.536 . AB=0.588235;ABP=4.1599;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=52;DPB=52;DPRA=1.86364;EPP=26.8965;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=379;QR=1384;RO=41;RPL=0;RPP=26.8965;RPPR=92.0407;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=92.0407;SRR=41;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:375:0:0:0,-3.31133,-34.0791 0/1:17:7,10:7:236:10:344:-26.1754,0,-16.4526 0/0:24:23,1:23:773:1:35:0,-3.72609,-66.3817 dDocent_Contig_4558 21 . G A 878.517 . AB=0.483871;ABP=3.15039;AC=3;AF=0.5;AN=6;AO=30;CIGAR=1X;DP=62;DPB=62;DPRA=0;EPP=68.1545;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1199;QR=1289;RO=32;RPL=0;RPP=68.1545;RPPR=72.4974;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:2,23:2:81:23:921:-75.6693,0,-0.159984 0/1:25:20,5:20:808:5:197:-10.5792,0,-65.5103 0/1:12:10,2:10:400:2:81:-4.07337,0,-32.747 dDocent_Contig_4559 12 . C T 204.927 . AB=0.183099;ABP=64.9431;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=179;DPB=179;DPRA=1.31481;EPP=31.2394;EPPR=363.475;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=475;QR=6432;RO=166;RPL=0;RPP=31.2394;RPPR=363.475;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=166;SRP=363.475;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:53:53,0:53:2045:0:0:0,-15.9546,-184.248 0/0:55:55,0:55:2115:0:0:0,-16.5566,-190.561 0/1:71:58,13:58:2272:13:475:-21.7145,0,-183.281 dDocent_Contig_4561 13 . T C 210.951 . AB=0.25;ABP=22.5536;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=158;DPB=158;DPRA=0.590164;EPP=22.5536;EPPR=326.56;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=361;QR=5846;RO=149;RPL=0;RPP=22.5536;RPPR=326.56;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=149;SRP=326.56;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:27,9:27:1038:9:361:-22.0159,0,-82.8709 0/0:35:35,0:35:1385:0:0:0,-10.536,-124.911 0/0:87:87,0:87:3423:0:0:0,-26.1896,-308.112 dDocent_Contig_4563 14 . G T 3310.19 . AB=0.0479042;ABP=299.488;AC=0;AF=0;AN=6;AO=8;CIGAR=1X2M2X1M1X1M1X;DP=271;DPB=271;DPRA=0;EPP=20.3821;EPPR=157.185;GTI=0;LEN=1;MEANALT=8;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=0.943662;PAO=0;PQA=0;PQR=0;PRO=0;QA=318;QR=2795;RO=71;RPL=0;RPP=20.3821;RPPR=157.185;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:104:26,0,2,48,13,6:26:1017:0,2,48,13,6:0,71,1877,496,242:-145.867,-153.694,-237.31,-147.912,-231.528,-230.926,0,-83.6173,-77.8359,-69.1679,-113.021,-196.636,-190.854,-42.9446,-192.723,-133.745,-217.361,-211.579,-63.6673,-176.687,-215.555 0|0:94:23,5,3,34,19,3:23:907:5,3,34,19,3:198,119,1327,712,122:-102.052,-92.6782,-165.799,-99.1794,-157.508,-172.902,0,-58.3304,-64.8316,-64.3931,-50.6772,-109.005,-115.506,-16.3312,-119.583,-98.9118,-157.241,-163.742,-64.5639,-115.238,-172.635 0|0:73:22,3,6,29,9,0:22:871:3,6,29,9,0:120,238,1147,357,0:-86.8165,-83.5536,-154.336,-73.8475,-135.647,-143.726,0,-61.7979,-52.092,-62.9534,-64.0542,-125.854,-116.148,-42.2988,-133.03,-93.4392,-155.239,-145.533,-71.6833,-135.739,-165.124 dDocent_Contig_4564 8 . A T 686.463 . AB=0.23913;ABP=84.5821;AC=3;AF=0.5;AN=6;AO=33;CIGAR=1X;DP=138;DPB=138;DPRA=0;EPP=74.6689;EPPR=222.329;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1249;QR=3864;RO=101;RPL=0;RPP=74.6689;RPPR=222.329;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:42,8:42:1596:8:292:-11.5766,0,-128.855 0/1:47:38,7:38:1467:7:272:-10.9347,0,-118.399 0/1:41:21,18:21:801:18:685:-49.8516,0,-60.2852 dDocent_Contig_4565 54 . C T 819.037 . AB=0.627907;ABP=9.12072;AC=2;AF=0.333333;AN=6;AO=28;CIGAR=1X;DP=64;DPB=64;DPRA=0;EPP=63.8115;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1113;QR=1399;RO=36;RPL=28;RPP=63.8115;RPPR=81.1833;RPR=0;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:3,5:3:115:5:201:-16.0627,0,-8.31497 0/0:21:20,1:20:764:1:41:0,-2.22706,-64.9786 0/1:35:13,22:13:520:22:871:-68.1598,0,-36.6085 dDocent_Contig_4566 20 . T A 12326.8 . AB=0.759104;ABP=211.186;AC=4;AF=0.666667;AN=6;AO=394;CIGAR=1X;DP=495;DPB=495;DPRA=0;EPP=849.907;EPPR=213.729;GTI=0;LEN=1;MEANALT=1;MQM=59.7462;MQMR=45.9802;NS=3;NUMALT=1;ODDS=0;PAIRED=0.0609137;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=15329;QR=3791;RO=101;RPL=0;RPP=858.57;RPPR=222.329;RPR=394;RUN=1;SAF=393;SAP=849.907;SAR=1;SRF=100;SRP=213.729;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:169:40,129:40:1523:129:5027:-401.493,0,-71.5702 0/1:188:46,142:46:1701:142:5500:-438.289,0,-65.0574 1/1:138:15,123:15:567:123:4802:-395.214,-5.50504,0 dDocent_Contig_4567 12 . C T 414.49 . AB=0;ABP=0;AC=0;AF=0;AN=6;AO=2;CIGAR=1X1M1X;DP=76;DPB=76;DPRA=0;EPP=7.35324;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=2292;RO=58;RPL=0;RPP=7.35324;RPPR=128.956;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:27:25,2,0:25:981:2,0:78,0:0,-0.724337,-81.1892,-7.52575,-81.7912,-88.2028 0|0:21:9,0,12:9:362:0,12:0,480:-37.2285,-39.9378,-69.7717,0,-30.2347,-26.6224 0|0:28:24,0,4:24:949:0,4:0,162:-6.53812,-13.7628,-91.8497,0,-78.49,-77.2859 dDocent_Contig_4569 22 . T G 1543.78 . AB=0.0521542;ABP=771.273;AC=0;AF=0;AN=6;AO=23;CIGAR=1M1X2M1X4M1X;DP=441;DPB=441;DPRA=0;EPP=52.9542;EPPR=273.266;GTI=0;LEN=1;MEANALT=15;MQM=60;MQMR=58.7286;NS=3;NUMALT=6;ODDS=1.11022e-16;PAIRED=1;PAIREDR=0.621429;PAO=0;PQA=0;PQR=0;PRO=0;QA=865;QR=5492;RO=140;RPL=0;RPP=52.9542;RPPR=307.016;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=136;SRP=273.266;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:113:41,22,4,1,1,12,12:41:1611:22,4,1,1,12,12:604,141,33,41,457,484:-31.2494,0,-125.626,-32.1116,-120.772,-163.164,-41.1937,-129.852,-161.97,-173.147,-40.2062,-128.864,-160.983,-170.064,-172.161,-6.09511,-94.763,-126.88,-135.961,-134.973,-134.746,-3.67808,-92.347,-124.464,-133.545,-132.558,-98.4535,-132.331 0|0:176:56,43,10,22,9,12,0:56:2177:43,10,22,9,12,0:1131,375,785,358,479,0:-64.1729,0,-164.513,-50.3075,-146.739,-224.762,-19.5314,-115.97,-166.28,-190.377,-51.5472,-147.979,-198.293,-167.52,-226.303,-41.5687,-138.002,-188.316,-157.543,-189.556,-215.423,-81.0306,-177.457,-227.772,-197,-229.012,-219.035,-258.491 0|0:152:43,22,9,12,23,6,7:43:1704:22,9,12,23,6,7:547,349,475,918,226,285:-62.6724,-38.5492,-170.807,-46.938,-148.755,-183.118,-38.2809,-140.099,-148.495,-173.559,0,-101.825,-110.219,-101.562,-131.972,-57.0949,-158.91,-167.307,-158.651,-120.375,-194.177,-52.1013,-153.917,-162.314,-153.658,-115.382,-172.47,-188.883 dDocent_Contig_4571 77 . G A 46.3185 . AB=0.3;ABP=6.48466;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=59;DPB=59;DPRA=0.408163;EPP=9.52472;EPPR=99.951;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=0.910714;PAO=0;PQA=0;PQR=0;PRO=0;QA=95;QR=1851;RO=56;RPL=3;RPP=9.52472;RPPR=124.613;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=53;SRP=99.951;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:298:0:0:0,-2.70927,-27.1423 0/1:10:7,3:7:239:3:95:-5.85368,0,-18.8337 0/0:40:40,0:40:1314:0:0:0,-12.0412,-118.544 dDocent_Contig_4573 9 . G A 656.927 . AB=0.304348;ABP=33.5997;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X;DP=92;DPB=92;DPRA=0;EPP=63.8115;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1067;QR=2393;RO=64;RPL=0;RPP=63.8115;RPPR=141.985;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:30,15:30:1154:15:566:-37.7323,0,-90.6139 0/1:17:13,4:13:453:4:156:-9.29978,0,-35.9725 0/1:30:21,9:21:786:9:345:-22.3773,0,-62.031 dDocent_Contig_4575 11 . G T 150.78 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X2M1X;DP=27;DPB=27;DPRA=0.347826;EPP=11.6962;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.77626e-21;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=887;RO=23;RPL=0;RPP=11.6962;RPPR=52.9542;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:4:0,4:0:0:4:158:-14.6005,-1.20412,0 0|0:8:8,0:8:309:0:0:0,-2.40824,-28.1726 0|0:15:15,0:15:578:0:0:0,-4.51545,-52.3614 dDocent_Contig_4578 8 . A G 77.0431 . 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AB=0.227273;ABP=17.2236;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=56;DPB=56;DPRA=1.29412;EPP=13.8677;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=1917;RO=51;RPL=0;RPP=13.8677;RPPR=113.755;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:211:0:0:0,-1.80618,-19.3272 0/0:28:28,0:28:1054:0:0:0,-8.42884,-95.1622 0/1:22:17,5:17:652:5:197:-11.4829,0,-52.3914 dDocent_Contig_4582 202 . C T 64.2429 . 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AB=0.222222;ABP=15.074;AC=0;AF=0;AN=6;AO=4;CIGAR=2X2M1X7M1X1M;DP=39;DPB=39;DPRA=0;EPP=11.6962;EPPR=55.1256;GTI=0;LEN=1;MEANALT=2;MQM=55.25;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=926;RO=24;RPL=0;RPP=11.6962;RPPR=55.1256;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:9:6,2,1,0:6:236:2,1,0:71,38,0:-3.91864,0,-18.8228,-2.59924,-16.3102,-21.7421,-5.72482,-19.4249,-22.0431,-25.1593 0|0:12:10,0,2,0:10:386:0,2,0:0,76,0:-3.60231,-6.61261,-38.3182,0,-32.0863,-31.4842,-6.61261,-38.3182,-32.0863,-38.3182 0|0:18:8,0,6,4:8:304:0,6,4:0,233,154:-16.74,-19.1483,-44.0734,0,-24.9255,-23.1193,-6.54682,-31.4701,-12.3209,-30.266 dDocent_Contig_4597 10 . C T 3040.86 . AB=0.772059;ABP=90.444;AC=3;AF=0.5;AN=6;AO=105;CIGAR=1X1M1X;DP=136;DPB=136;DPRA=0;EPP=231.015;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.7143;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3874;QR=1184;RO=30;RPL=0;RPP=231.015;RPPR=68.1545;RPR=105;RUN=1;SAF=105;SAP=231.015;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:38:5,33:5:204:33:1236:-99.3989,0,-7.30489 0|1:40:5,35:5:200:35:1249:-100.659,0,-6.33872 0|1:58:20,37:20:780:37:1389:-107.746,0,-52.9728 dDocent_Contig_4598 13 . T A 287.546 . AB=0.192771;ABP=71.0585;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=132;DPB=132;DPRA=0.846939;EPP=37.7539;EPPR=254.901;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=615;QR=4660;RO=116;RPL=0;RPP=37.7539;RPPR=254.901;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:49:49,0:49:1957:0:0:0,-14.7505,-176.328 0/1:24:17,7:17:678:7:269:-17.3434,0,-54.1228 0/1:59:50,9:50:2025:9:346:-13.7299,0,-164.671 dDocent_Contig_4600 44 . C A 101.714 . AB=0.16;ABP=28.1125;AC=2;AF=0.333334;AN=6;AO=4;CIGAR=1M1X;DP=49;DPB=50.5;DPRA=3.57143;EPP=11.6962;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=1636;RO=42;RPL=0;RPP=11.6962;RPPR=94.2121;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:7:7,0,0:7:277:0,0:0,0:0,-2.10721,-25.2996,-2.10721,-25.2996,-25.2996 0|1:25:21,0,4:21:836:0,4:0,163:-7.53268,-13.8543,-82.6831,0,-69.2343,-68.0302 0|1:17:14,3,0:14:523:3,0:108,0:-4.95738,0,-42.2791,-9.1718,-43.1822,-51.9918 dDocent_Contig_4601 9 . G C 206.89 . AB=0.238095;ABP=28.0339;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=122;DPB=122;DPRA=2.88889;EPP=26.8965;EPPR=244.044;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.963964;PAO=0;PQA=0;PQR=0;PRO=0;QA=419;QR=4213;RO=111;RPL=0;RPP=26.8965;RPPR=244.044;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=111;SRP=244.044;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:687:0:0:0,-5.41854,-62.1624 0/1:42:32,10:32:1217:10:380:-21.9108,0,-97.1825 0/0:62:61,1:61:2309:1:39:0,-14.7673,-204.129 dDocent_Contig_4602 32 . C T 989.681 . AB=0.0645161;ABP=105.14;AC=0;AF=0;AN=6;AO=4;CIGAR=1X2M1X4M;DP=62;DPB=62;DPRA=0;EPP=11.6962;EPPR=46.4397;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.95;PAO=0;PQA=0;PQR=0;PRO=0;QA=139;QR=758;RO=20;RPL=0;RPP=11.6962;RPPR=46.4397;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:43:13,1,0,27:13:494:1,0,27:39,0,1060:-83.2835,-83.991,-124.199,-87.1969,-124.5,-127.706,0,-37.3183,-40.5251,-32.3972 0|0:6:2,1,0,3:2:77:1,0,3:30,0,112:-8.62153,-6.84328,-12.8693,-9.22359,-13.1703,-15.556,0,-4.00855,-6.37888,-5.47579 0|0:13:5,2,2,4:5:187:2,2,4:70,79,150:-10.7797,-6.59753,-21.3049,-5.77723,-15.4027,-20.4914,0,-9.62514,-8.80698,-14.1096 dDocent_Contig_4603 8 . A C 4641.82 . AB=0.146133;ABP=2421.97;AC=3;AF=0.5;AN=6;AO=325;CIGAR=1X;DP=2224;DPB=2224;DPRA=0;EPP=708.739;EPPR=3931.22;GTI=0;LEN=1;MEANALT=2.33333;MQM=58.8738;MQMR=58.6901;NS=3;NUMALT=1;ODDS=0;PAIRED=0.0646154;PAIREDR=0.0638415;PAO=0;PQA=0;PQR=0;PRO=0;QA=12405;QR=69090;RO=1817;RPL=0;RPP=708.739;RPPR=3948.58;RPR=325;RUN=1;SAF=325;SAP=708.739;SAR=0;SRF=1815;SRP=3931.22;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:848:677,136:677:25713:136:5152:-217.304,0,-2052.62 0/1:749:630,95:630:23995:95:3646:-108.226,0,-1929.44 0/1:627:510,94:510:19382:94:3607:-142.369,0,-1555.87 dDocent_Contig_4604 15 . C T 52.8612 . AB=0.214286;ABP=12.937;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=76;DPB=76;DPRA=0.451613;EPP=9.52472;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9041;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.958904;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=2924;RO=73;RPL=0;RPP=9.52472;RPPR=161.528;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:831:0:0:0,-6.32163,-75.1038 0/0:41:41,0:41:1647:0:0:0,-12.3422,-148.441 0/1:14:11,3:11:446:3:115:-6.50796,0,-36.2816 dDocent_Contig_4605 21 . A G 307.511 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=60;DPB=60;DPRA=1.15789;EPP=26.8965;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=425;QR=1943;RO=49;RPL=0;RPP=26.8965;RPPR=109.412;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:990:0:0:0,-7.52575,-89.4036 0/0:13:13,0:13:515:0:0:0,-3.91339,-46.6974 0/1:22:11,11:11:438:11:425:-31.9729,0,-33.1524 dDocent_Contig_4606 19 . C T 125.937 . AB=0.146667;ABP=84.3392;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=98;DPB=98;DPRA=1.63043;EPP=26.8965;EPPR=189.757;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=59.5349;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=408;QR=3371;RO=86;RPL=0;RPP=26.8965;RPPR=189.757;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:31,5:31:1191:5:184:-6.08047,0,-96.4414 0/0:23:23,0:23:922:0:0:0,-6.92369,-83.2871 0/1:39:32,6:32:1258:6:224:-8.832,0,-101.592 dDocent_Contig_4608 8 . A G 275.056 . AB=0.133333;ABP=20.5268;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=2X2M1X;DP=38;DPB=38.4;DPRA=0;EPP=7.35324;EPPR=48.6112;GTI=0;LEN=1;MEANALT=3;MQM=42;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.904762;PAO=0.666667;PQA=21.3333;PQR=0;PRO=0;QA=74;QR=767;RO=21;RPL=0;RPP=7.35324;RPPR=48.6112;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:11,2,0,2:11:387:2,0,2:78,0,81:-3.10064,0,-30.8672,-6.41197,-31.4693,-37.8852,-0.0141544,-25.0653,-31.4828,-30.8807 0|0:8:3,0,0,5:3:109:0,0,5:0,0,188:-14.7496,-15.6527,-24.5411,-15.6527,-24.5411,-24.5411,0,-9.19347,-9.19347,-7.68832 0|1:15:7,5,2,0:7:271:5,2,0:188,74,0:-13.2485,0,-20.7961,-9.69616,-16.6439,-31.3701,-15.3557,-22.3013,-31.9722,-37.6314 dDocent_Contig_4610 9 . G A 70.4956 . AB=0.3;ABP=6.48466;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=2X2M1X;DP=33;DPB=33;DPRA=0.869565;EPP=9.52472;EPPR=59.4686;GTI=0;LEN=1;MEANALT=2;MQM=55;MQMR=58.4231;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.961538;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=1004;RO=26;RPL=0;RPP=9.52472;RPPR=59.4686;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:15:13,0,0:13:500:0,0:0,0:0,-3.91339,-43.2274,-3.91339,-43.2274,-43.2274 0|1:10:5,3,2:5:194:3,2:119,79:-8.2713,0,-15.0352,-3.37064,-9.52958,-18.7033 0|0:8:8,0,0:8:310:0,0:0,0:0,-2.40824,-28.2634,-2.40824,-28.2634,-28.2634 dDocent_Contig_4611 30 . A G 296.421 . AB=0.625;ABP=5.18177;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=25;DPB=25;DPRA=0.888889;EPP=24.725;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=400;QR=583;RO=15;RPL=0;RPP=24.725;RPPR=35.5824;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:1,5:1:41:5:197:-16.2998,0,-2.28839 0/1:10:5,5:5:193:5:203:-15.6428,0,-14.7302 0/0:9:9,0:9:349:0:0:0,-2.70927,-31.7657 dDocent_Contig_4612 44 . C T 287.542 . AB=0.229508;ABP=41.7764;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=61;DPB=61;DPRA=0;EPP=33.4109;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=547;QR=1878;RO=47;RPL=0;RPP=33.4109;RPPR=105.07;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:19,3:19:762:3:120:-4.56465,0,-62.2771 0/1:29:19,10:19:755:10:387:-26.4556,0,-59.5443 0/1:10:9,1:9:361:1:40:-0.985379,0,-29.842 dDocent_Contig_4613 83 . G T 99.2075 . AB=0.195122;ABP=36.112;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X;DP=41;DPB=41;DPRA=0;EPP=20.3821;EPPR=50.9801;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.6364;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.878788;PAO=0;PQA=0;PQR=0;PRO=0;QA=277;QR=1112;RO=33;RPL=8;RPP=20.3821;RPPR=74.6689;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=30;SRP=50.9801;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:13,3:13:405:3:101:-4.60665,0,-31.9337 0/1:15:13,2:13:456:2:72:-2.32127,0,-36.8567 0/1:10:7,3:7:251:3:104:-6.69251,0,-16.268 dDocent_Contig_4614 32 . C A 120.665 . AB=0.3125;ABP=7.89611;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=45;DPB=45;DPRA=1.10345;EPP=13.8677;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=1568;RO=40;RPL=0;RPP=13.8677;RPPR=89.8692;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:787:0:0:0,-6.0206,-71.1492 0/0:9:9,0:9:350:0:0:0,-2.70927,-31.8569 0/1:16:11,5:11:431:5:197:-13.2883,0,-34.3256 dDocent_Contig_4615 159 . G A 132.223 . AB=0.416667;ABP=3.73412;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=22;DPB=22;DPRA=0.6;EPP=13.8677;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=616;RO=17;RPL=5;RPP=13.8677;RPPR=39.9253;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=39.9253;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:3:1,2:1:40:2:81:-6.78264,0,-3.09259 0/0:10:10,0:10:357:0:0:0,-3.0103,-32.4621 0/1:9:6,3:6:219:3:123:-8.75552,0,-17.347 dDocent_Contig_4616 55 . T C 548.897 . AB=0.55;ABP=3.44459;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=51;DPB=51;DPRA=0.52;EPP=39.9253;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=58.9412;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.764706;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=681;QR=1374;RO=34;RPL=17;RPP=39.9253;RPPR=76.8404;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:241:-21.8761,-1.80618,0 0/1:20:9,11:9:366:11:440:-33.9343,0,-27.2846 0/0:25:25,0:25:1008:0:0:0,-7.52575,-91.0144 dDocent_Contig_4617 9 . G T 2429.32 . AB=0.846154;ABP=151.84;AC=4;AF=0.666667;AN=6;AO=238;CIGAR=1X;DP=266;DPB=266;DPRA=0;EPP=519.821;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=14.6765;MQMR=59.2857;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=0;PAIREDR=0.464286;PAO=0;PQA=0;PQR=0;PRO=0;QA=9005;QR=1072;RO=28;RPL=0;RPP=519.821;RPPR=63.8115;RPR=238;RUN=1;SAF=238;SAP=519.821;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:66:8,58:8:305:58:2167:-53.3916,0,-7.94187 0/1:77:14,63:14:537:63:2366:-68.0797,0,-25.4458 1/1:123:6,117:6:230:117:4472:-123.779,-15.9598,0 dDocent_Contig_4618 78 . G C 39.2393 . AB=0.230769;ABP=11.1951;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=19;DPB=19;DPRA=1.08333;EPP=9.52472;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=556;RO=16;RPL=3;RPP=9.52472;RPPR=37.7539;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:8,2:8:275:2:70:-3.6371,0,-22.0743 0/0:6:6,0:6:211:0:0:0,-1.80618,-19.3333 0/1:3:2,1:2:70:1:35:-2.59554,0,-5.74431 dDocent_Contig_4619 21 . A C 173.268 . 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T G 1370.14 . AB=0.704545;ABP=19.0002;AC=4;AF=0.666667;AN=6;AO=43;CIGAR=1X;DP=56;DPB=56;DPRA=0;EPP=96.3836;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1684;QR=479;RO=13;RPL=0;RPP=96.3836;RPPR=31.2394;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:12:0,12:0:0:12:471:-42.7406,-3.61236,0 0/1:22:5,17:5:182:17:656:-52.7443,0,-10.1082 0/1:22:8,14:8:297:14:557:-43.8481,0,-20.4595 dDocent_Contig_4622 39 . T C 1367.13 . AB=0.592105;ABP=8.61041;AC=3;AF=0.5;AN=6;AO=45;CIGAR=4M1X;DP=76;DPB=74.8;DPRA=0;EPP=100.727;EPPR=65.983;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1801;QR=1155;RO=29;RPL=0;RPP=100.727;RPPR=65.983;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:46:21,0,25:21:836:0,25:0,995:-75.9977,-82.3194,-151.155,0,-69.2331,-61.7073 0|1:8:3,2,3:3:120:2,3:78,119:-8.89655,-3.39068,-12.6755,0,-3.48357,-8.98811 0|1:22:5,0,17:5:199:0,17:0,687:-55.5356,-57.0408,-73.4245,0,-16.7827,-11.6652 dDocent_Contig_4623 12 . G T 89.5503 . AB=0.266667;ABP=10.1038;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=2X1M1X;DP=62;DPB=62;DPRA=0.638298;EPP=11.6962;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.948276;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=2171;RO=58;RPL=0;RPP=11.6962;RPPR=128.956;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:32:32,0:32:1189:0:0:0,-9.63296,-107.309 0|1:15:11,4:11:410:4:159:-10.1769,0,-32.7305 0|0:15:15,0:15:572:0:0:0,-4.51545,-51.821 dDocent_Contig_4625 128 . T C 216.69 . AB=0.888889;ABP=14.8328;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=43;DPB=43;DPRA=0.529412;EPP=20.3821;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=40;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=276;QR=1153;RO=35;RPL=0;RPP=20.3821;RPPR=79.0118;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=79.0118;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:1,8:1:33:8:276:-21.6852,0,-0.511756 0/0:16:16,0:16:524:0:0:0,-4.81648,-46.246 0/0:18:18,0:18:596:0:0:0,-5.41854,-52.4049 dDocent_Contig_4627 13 . G T 231.895 . AB=0.470588;ABP=3.13803;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=35;DPB=35;DPRA=1.88889;EPP=20.3821;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=324;QR=1078;RO=27;RPL=0;RPP=20.3821;RPPR=61.6401;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:313:0:0:0,-2.40824,-28.5312 0/0:10:10,0:10:398:0:0:0,-3.0103,-36.179 0/1:17:9,8:9:367:8:324:-24.4113,0,-28.2777 dDocent_Contig_4628 10 . T C 41.1219 . AB=0.125;ABP=42.0968;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=63;DPB=63;DPRA=2.06452;EPP=11.6962;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.983051;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=2337;RO=59;RPL=0;RPP=11.6962;RPPR=131.127;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:402:0:0:0,-3.0103,-36.5401 0/0:21:21,0:21:847:0:0:0,-6.32163,-76.5428 0/1:32:28,4:28:1088:4:162:-5.334,0,-88.5712 dDocent_Contig_4629 54 . C T 135.375 . AB=0.333333;ABP=7.35324;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=44;DPB=44;DPRA=0;EPP=18.2106;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=268;QR=1480;RO=37;RPL=7;RPP=18.2106;RPPR=83.3548;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:3,4:3:120:4:146:-11.3878,0,-9.08048 0/0:26:25,1:25:1004:1:40:0,-3.8311,-86.6619 0/1:11:9,2:9:356:2:82:-4.46835,0,-29.0906 dDocent_Contig_4630 13 . G A 184.811 . AB=0;ABP=0;AC=3;AF=0.5;AN=6;AO=4;CIGAR=1X4M;DP=18;DPB=18;DPRA=0.666667;EPP=11.6962;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=473;RO=12;RPL=0;RPP=11.6962;RPPR=29.068;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:6:6,0,0:6:237:0,0:0,0:0,-1.80618,-21.7035,-1.80618,-21.7035,-21.7035 0|1:8:6,2,0:6:236:2,0:74,0:-4.61753,0,-19.2042,-6.42371,-19.8063,-25.8544 1|1:4:0,0,4:0:0:0,4:0,160:-14.7834,-14.7834,-14.7834,-1.20412,-1.20412,0 dDocent_Contig_4632 31 . G A 2352.74 . AB=0.65812;ABP=28.4184;AC=3;AF=0.5;AN=6;AO=77;CIGAR=1X;DP=117;DPB=117;DPRA=0;EPP=170.214;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3037;QR=1594;RO=40;RPL=0;RPP=170.214;RPPR=89.8692;RPR=77;RUN=1;SAF=77;SAP=170.214;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:13,22:13:519:22:873:-68.3423,0,-36.522 0/1:26:15,11:15:595:11:438:-31.948,0,-46.0617 0/1:56:12,44:12:480:44:1726:-138.7,0,-26.6913 dDocent_Contig_4633 9 . C T 166.511 . AB=0.266667;ABP=17.1973;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X;DP=30;DPB=30;DPRA=0;EPP=20.3821;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=306;QR=842;RO=22;RPL=0;RPP=20.3821;RPPR=50.7827;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:9,1:9:344:1:37:-0.687529,0,-28.3074 0/1:16:12,4:12:459:4:156:-9.60081,0,-36.8426 0/1:4:1,3:1:39:3:113:-9.33485,0,-2.69244 dDocent_Contig_4634 11 . G C 180.519 . AB=0.06;ABP=87.0897;AC=0;AF=0;AN=6;AO=3;CIGAR=1M1X3M;DP=114;DPB=111;DPRA=1.78571;EPP=9.52472;EPPR=209.3;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=3688;RO=95;RPL=0;RPP=9.52472;RPPR=209.3;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:50:41,6,3:41:1590:6,3:233,123:-6.7874,0,-128.796,-8.97022,-120.448,-138.689 0|0:36:29,7,0:29:1131:7,0:268,0:-13.5831,0,-91.2475,-22.3129,-93.3547,-115.285 0|0:28:25,2,0:25:967:2,0:74,0:0,-1.50615,-80.3024,-7.52575,-80.9044,-86.9495 dDocent_Contig_4635 71 . C G 284.976 . AB=0.37931;ABP=6.67934;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=93;DPB=93;DPRA=0.90625;EPP=26.8965;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=420;QR=3173;RO=82;RPL=11;RPP=26.8965;RPPR=181.071;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:18,11:18:689:11:420:-29.4185,0,-53.6094 0/0:37:37,0:37:1437:0:0:0,-11.1381,-129.58 0/0:27:27,0:27:1047:0:0:0,-8.12781,-94.5359 dDocent_Contig_4637 173 . C T 89.9705 . AB=0.444444;ABP=3.25157;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=25;DPB=25;DPRA=1.125;EPP=3.0103;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=48;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=141;QR=811;RO=21;RPL=0;RPP=11.6962;RPPR=48.6112;RPR=4;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:339:0:0:0,-2.70927,-30.8575 0/1:9:5,4:5:200:4:141:-10.2188,0,-15.6704 0/0:7:7,0:7:272:0:0:0,-2.10721,-24.8386 dDocent_Contig_4640 101 . N A 68.9196 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=2X6I2X4I3X;DP=5;DPB=12.1429;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=15;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:5:0,5:0:0:5:193:-6.89142,-1.50515,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_4642 8 . A G 428.133 . AB=0.6;ABP=5.18177;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=41;DPB=41;DPRA=0;EPP=37.7539;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=614;QR=950;RO=25;RPL=0;RPP=37.7539;RPPR=57.2971;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:15,1:15:571:1:37:0,-1.11865,-48.0332 0/1:10:2,8:2:78:8:304:-24.7089,0,-4.39317 0/1:15:8,7:8:301:7:273:-20.4226,0,-22.9296 dDocent_Contig_4643 178 . T G 39.6192 . AB=0.25;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=20;DPB=20;DPRA=1.33333;EPP=7.35324;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=728;RO=18;RPL=2;RPP=7.35324;RPPR=42.0968;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:322:0:0:0,-2.40824,-29.3487 0/1:8:6,2:6:244:2:80:-5.18333,0,-19.9304 0/0:4:4,0:4:162:0:0:0,-1.20412,-14.967 dDocent_Contig_4644 9 . C T 360.679 . AB=0.3;ABP=20.3821;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=2X3M2X2M1X;DP=56;DPB=56;DPRA=4.16667;EPP=35.5824;EPPR=81.1833;GTI=0;LEN=1;MEANALT=2;MQM=57.9333;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.933333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=585;QR=1409;RO=36;RPL=0;RPP=35.5824;RPPR=81.1833;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:11:6,2,2:6:237:2,2:79,80:-4.78663,-0.0925071,-18.9921,0,-13.0027,-18.9018 0|0:6:4,0,0:4:160:0,0:0,0:0,-1.20412,-14.3911,-1.20412,-14.3911,-14.3911 0|1:39:26,0,13:26:1012:0,13:0,505:-33.4958,-41.3226,-124.493,0,-83.5561,-79.6427 dDocent_Contig_4645 107 . N A 100.749 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=1;CIGAR=1X4M;DP=3;DPB=3;DPRA=0.5;EPP=5.18177;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=57;MQMR=0;NS=2;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=34;QR=0;RO=0;RPL=0;RPP=5.18177;RPPR=0;RPR=1;RUN=1;SAF=0;SAP=5.18177;SAR=1;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:1:0,0,1:0:0:0,1:0,34:-3.39783,-3.39783,-3.39783,-0.30103,-0.30103,0 1|1:2:0,2,0:0:0:2,0:67,0:-6.36304,-0.60206,0,-6.36304,-0.60206,-6.36304 dDocent_Contig_4646 37 . A G 274.179 . AB=0.75;ABP=9.52472;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=46;DPB=46;DPRA=0.705882;EPP=22.5536;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.972973;PAO=0;PQA=0;PQR=0;PRO=0;QA=351;QR=1485;RO=37;RPL=0;RPP=22.5536;RPPR=83.3548;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:3,9:3:121:9:351:-28.3387,0,-7.66784 0/0:24:24,0:24:961:0:0:0,-7.22472,-86.7897 0/0:10:10,0:10:403:0:0:0,-3.0103,-36.6304 dDocent_Contig_4647 121 . C T 301.437 . AB=0.4;ABP=6.05036;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X2M1X;DP=35;DPB=35;DPRA=0;EPP=33.4109;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=482;QR=685;RO=21;RPL=0;RPP=33.4109;RPPR=48.6112;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:11,4:11:353:4:136:-8.06047,0,-27.5664 0|1:7:2,5:2:68:5:171:-13.6195,0,-4.35072 0|1:13:8,5:8:264:5:175:-12.1803,0,-20.1685 dDocent_Contig_4648 19 . A G 527.415 . AB=0.075;ABP=65.7659;AC=3;AF=0.5;AN=6;AO=3;CIGAR=1X4M;DP=52;DPB=52;DPRA=0;EPP=9.52472;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1227;RO=31;RPL=0;RPP=9.52472;RPPR=70.3259;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:26:13,12,1:13:516:12,1:476,41:-35.2586,0,-38.8532,-35.7869,-39.0806,-77.9636 0|1:14:12,0,2:12:471:0,2:0,81:-3.47131,-7.08367,-45.8077,0,-39.1267,-38.5247 0|1:12:6,6,0:6:240:6,0:233,0:-17.727,0,-18.3637,-19.5332,-20.1698,-39.3093 dDocent_Contig_4649 98 . N A 7505.17 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=218;CIGAR=3X;DP=219;DPB=219;DPRA=0;EPP=476.391;EPPR=0;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.9725;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=8331;QR=0;RO=0;RPL=0;RPP=476.391;RPPR=0;RPR=218;RUN=1;SAF=218;SAP=476.391;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:65:0,64:0:0:64:2464:-221.718,-19.2659,0 1|1:99:0,99:0:0:99:3758:-338.315,-29.802,0 1|1:55:0,55:0:0:55:2109:-190.007,-16.5567,0 dDocent_Contig_4650 83 . T C 951.601 . AB=0.0568182;ABP=153.138;AC=3;AF=0.5;AN=6;AO=5;CIGAR=1X5M;DP=114;DPB=114.833;DPRA=0;EPP=13.8677;EPPR=105.07;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=0.957447;PAO=1;PQA=33.6;PQR=0;PRO=0;QA=166;QR=1511;RO=47;RPL=5;RPP=13.8677;RPPR=105.07;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:49:12,5,24,0,6,2:12:380:5,24,0,6,2:162,792,0,198,69:-60.4137,-50.9572,-80.0268,0,-17.4991,-23.3434,-64.026,-81.532,-30.5681,-94.6016,-48.0178,-65.523,-14.5589,-78.5926,-76.7864,-58.4197,-75.9255,-24.961,-88.9953,-72.9861,-88.3932 0|1:39:24,0,12,0,0,3:24:775:0,12,0,0,3:0,397,0,0,97:-24.8629,-32.0876,-94.5884,0,-62.4796,-58.8672,-32.0876,-94.5884,-62.4796,-94.5884,-32.0876,-94.5884,-62.4796,-94.5884,-94.5884,-24.2659,-86.7639,-54.6552,-86.7639,-86.7639,-85.8608 0|1:26:11,5,6,2,2,0:11:356:5,6,2,2,0:172,208,62,68,0:-13.6,-2.94007,-30.1483,0,-14.7401,-26.9082,-11.9395,-26.6791,-23.74,-40.0487,-11.3954,-26.1365,-23.1972,-35.1343,-39.5068,-16.9114,-31.6535,-28.7144,-40.6508,-40.1088,-45.6254 dDocent_Contig_4651 1 . N G 267.53 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=22.5536;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=281;QR=0;RO=0;RPL=0;RPP=22.5536;RPPR=0;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1/1:6:0,6:0:0:6:177:-16.2202,-1.80618,0 dDocent_Contig_4652 10 . C T 59.9982 . AB=0.119048;ABP=55.9529;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X3M1X;DP=50;DPB=50;DPRA=2.625;EPP=13.8677;EPPR=87.6977;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=1518;RO=39;RPL=0;RPP=13.8677;RPPR=87.6977;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:8:8,0,0,0:8:308:0,0,0:0,0,0:0,-2.40824,-28.0789,-2.40824,-28.0789,-28.0789,-2.40824,-28.0789,-28.0789,-28.0789 0|0:20:13,2,3,2:13:511:2,3,2:80,108,80:-3.83073,-1.14058,-42.5993,0,-35.4358,-41.1235,-1.14079,-36.6091,-35.436,-42.5995 0|1:22:18,3,0,0:18:699:3,0,0:120,0,0:-4.4667,0,-56.5157,-9.88524,-57.4188,-67.3055,-9.88524,-57.4188,-67.3055,-67.3055 dDocent_Contig_4653 40 . T A 249.194 . AB=0.235294;ABP=34.0496;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=90;DPB=90;DPRA=0.653846;EPP=29.068;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=465;QR=2849;RO=78;RPL=0;RPP=29.068;RPPR=172.385;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:39,0:39:1452:0:0:0,-11.7402,-130.962 0/1:26:17,9:17:579:9:347:-23.76,0,-44.596 0/1:25:22,3:22:818:3:118:-3.47697,0,-66.411 dDocent_Contig_4654 7 . T C 45.3055 . AB=0.133333;ABP=38.0434;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X3M1X;DP=120;DPB=120;DPRA=1.12162;EPP=16.0391;EPPR=168.944;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=57.6132;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.584906;PAO=0;PQA=0;PQR=0;PRO=0;QA=226;QR=3964;RO=106;RPL=0;RPP=16.0391;RPPR=233.186;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=98;SRP=168.944;SRR=8;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:53:48,2,3,0:48:1789:2,3,0:72,114,0:0,-8.5829,-153.775,-5.08809,-145.027,-149.998,-14.4494,-154.377,-150.901,-160.251 0|1:30:23,4,0,1:23:868:4,0,1:154,0,41:-5.75238,0,-69.9514,-12.6761,-71.1555,-83.8019,-9.28393,-67.7699,-80.4166,-80.1156 0|0:37:35,0,0,2:35:1307:0,0,2:0,0,82:0,-10.536,-117.373,-10.536,-117.373,-117.373,-3.35843,-110.603,-110.603,-110.001 dDocent_Contig_4655 16 . A C 309.706 . AB=0.295455;ABP=19.0002;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=44;DPB=44;DPRA=0;EPP=31.2394;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=59.5385;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=520;QR=1241;RO=31;RPL=0;RPP=31.2394;RPPR=70.3259;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:18,5:18:715:5:198:-11.2737,0,-57.7542 0/1:9:5,4:5:201:4:159:-11.9676,0,-15.7618 0/1:12:8,4:8:325:4:163:-11.4461,0,-26.0071 dDocent_Contig_4656 50 . A T 861.547 . AB=0.290323;ABP=14.8483;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X;DP=66;DPB=66;DPRA=1.7;EPP=63.8115;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1108;QR=1488;RO=38;RPL=28;RPP=63.8115;RPPR=85.5263;RPR=0;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:22,9:22:874:9:354:-22.8877,0,-69.64 1/1:20:1,19:1:40:19:754:-64.1878,-2.02492,0 0/0:15:15,0:15:574:0:0:0,-4.51545,-51.9902 dDocent_Contig_4657 18 . G A 34.8242 . AB=0.142857;ABP=26.2761;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X3M1X3M3X;DP=48;DPB=48;DPRA=1.55556;EPP=9.52472;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.955556;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=1737;RO=45;RPL=0;RPP=9.52472;RPPR=100.727;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:21:18,3:18:696:3:115:-4.4031,0,-56.6482 0|0:12:12,0:12:460:0:0:0,-3.61236,-41.7484 0|0:15:15,0:15:581:0:0:0,-4.51545,-52.6292 dDocent_Contig_4659 143 . A T 33.9633 . AB=0.222222;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=22;DPB=22;DPRA=1.38462;EPP=7.35324;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.8;PAO=0;PQA=0;PQR=0;PRO=0;QA=74;QR=740;RO=20;RPL=2;RPP=7.35324;RPPR=46.4397;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:259:2:74:-4.31661,0,-20.9568 0/0:4:4,0:4:148:0:0:0,-1.20412,-13.682 0/0:9:9,0:9:333:0:0:0,-2.70927,-30.3222 dDocent_Contig_4660 8 . A G 339.065 . AB=0.333333;ABP=13.1438;AC=1;AF=0.166667;AN=6;AO=17;CIGAR=1X;DP=131;DPB=131;DPRA=1.22368;EPP=39.9253;EPPR=250.558;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=644;QR=4322;RO=114;RPL=0;RPP=39.9253;RPPR=250.558;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:38,0:38:1444:0:0:0,-11.4391,-130.239 0/1:42:28,14:28:1070:14:527:-35.1283,0,-83.9633 0/0:51:48,3:48:1808:3:117:0,-4.44215,-152.064 dDocent_Contig_4661 16 . A C 189.765 . AB=0.275862;ABP=15.6647;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=45;DPB=45;DPRA=0.90625;EPP=20.3821;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=325;QR=1457;RO=37;RPL=0;RPP=20.3821;RPPR=83.3548;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:611:0:0:0,-4.81648,-55.3166 0/1:21:17,4:17:684:4:161:-8.55364,0,-55.5687 0/1:8:4,4:4:162:4:164:-12.7417,0,-12.5587 dDocent_Contig_4662 77 . A C 54.7411 . AB=0.214286;ABP=12.937;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=42;DPB=42;DPRA=1;EPP=9.52472;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=1476;RO=39;RPL=3;RPP=9.52472;RPPR=87.6977;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:613:0:0:0,-4.81648,-55.5098 0/1:14:11,3:11:423:3:117:-6.69596,0,-34.2088 0/0:12:12,0:12:440:0:0:0,-3.61236,-39.9442 dDocent_Contig_4663 94 . C A 1078.87 . AB=0.40678;ABP=11.917;AC=3;AF=0.5;AN=6;AO=48;CIGAR=1X;DP=118;DPB=118;DPRA=0;EPP=107.241;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.8125;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1624;QR=2343;RO=70;RPL=48;RPP=107.241;RPPR=155.013;RPR=0;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:36,13:36:1198:13:437:-24.9027,0,-93.3664 0/1:16:11,5:11:359:5:170:-10.8181,0,-27.8093 0/1:53:23,30:23:786:30:1017:-75.8825,0,-55.1025 dDocent_Contig_4664 62 . C A 32.4676 . AB=0.166667;ABP=14.5915;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=36;DPB=36;DPRA=1;EPP=7.35324;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=1294;RO=34;RPL=2;RPP=7.35324;RPPR=76.8404;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:10,2:10:381:2:82:-4.16732,0,-31.027 0/0:9:9,0:9:356:0:0:0,-2.70927,-32.4026 0/0:15:15,0:15:557:0:0:0,-4.51545,-50.4636 dDocent_Contig_4665 8 . A G 151.285 . AB=0.8;ABP=6.91895;AC=3;AF=0.500001;AN=6;AO=4;CIGAR=1X21M;DP=37;DPB=36.8182;DPRA=0;EPP=11.6962;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=879;RO=23;RPL=0;RPP=11.6962;RPPR=52.9542;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:14:9,2,2,0,0,0:9:344:2,2,0,0,0:72,73,0,0,0:-3.25716,-0.0932628,-27.7323,0,-22.3724,-27.6415,-5.96643,-28.3343,-28.2436,-34.2063,-5.96643,-28.3343,-28.2436,-34.2063,-34.2063,-5.96643,-28.3343,-28.2436,-34.2063,-34.2063,-34.2063 0|1:5:1,0,0,0,0,4:1:39:0,0,0,0,4:0,0,0,0,154:-12.7283,-13.0293,-16.2362,-13.0293,-16.2362,-16.2362,-13.0293,-16.2362,-16.2362,-16.2362,-13.0293,-16.2362,-16.2362,-16.2362,-16.2362,0,-3.59553,-3.59553,-3.59553,-3.59553,-2.39141 0|1:18:13,0,0,2,2,0:13:496:0,0,2,2,0:0,0,80,77,0:-2.68338,-6.59677,-47.2828,-6.59677,-47.2828,-47.2828,0,-40.6907,-40.6907,-40.0886,-0.27769,-40.9603,-40.9603,-34.3678,-40.3583,-6.59677,-47.2828,-47.2828,-40.6907,-40.9603,-47.2828 dDocent_Contig_4666 120 . T C 502.327 . AB=0.296703;ABP=35.6778;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1X;DP=91;DPB=91;DPRA=0;EPP=61.6401;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=893;QR=2157;RO=64;RPL=0;RPP=61.6401;RPPR=141.985;RPR=27;RUN=1;SAF=0;SAP=61.6401;SAR=27;SRF=0;SRP=141.985;SRR=64;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:31,10:31:1015:10:319:-16.6763,0,-79.3019 0/1:9:7,2:7:242:2:69:-3.84339,0,-19.4084 0/1:41:26,15:26:900:15:505:-33.4292,0,-68.9737 dDocent_Contig_4667 46 . T G 31.5296 . AB=0.181818;ABP=12.6832;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=26;DPB=26;DPRA=1.46667;EPP=7.35324;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=968;RO=24;RPL=0;RPP=7.35324;RPPR=55.1256;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:241:0:0:0,-1.80618,-22.0658 0/0:9:9,0:9:362:0:0:0,-2.70927,-32.9431 0/1:11:9,2:9:365:2:81:-4.3744,0,-29.9032 dDocent_Contig_4668 174 . C T 146.155 . AB=0.285714;ABP=11.386;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=30;DPB=30;DPRA=4.66667;EPP=16.0391;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=954;RO=24;RPL=6;RPP=16.0391;RPPR=55.1256;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2,0:2:79:0:0:0,-0.60206,-7.49724 0/1:21:15,6:15:594:6:242:-15.8359,0,-47.4756 0/0:7:7,0:7:281:0:0:0,-2.10721,-25.6611 dDocent_Contig_4669 23 . G C 163.38 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=44;DPB=44;DPRA=0.75;EPP=16.0391;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=58.6667;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=228;QR=1517;RO=38;RPL=0;RPP=16.0391;RPPR=85.5263;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:6,6:6:230:6:228:-17.2588,0,-17.4516 0/0:15:15,0:15:598:0:0:0,-4.51545,-54.1584 0/0:17:17,0:17:689:0:0:0,-5.11751,-62.338 dDocent_Contig_4672 7 . T C 5158.35 . AB=0.688623;ABP=54.6185;AC=4;AF=0.666667;AN=6;AO=170;CIGAR=1X;DP=227;DPB=227;DPRA=0;EPP=372.161;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=59.7176;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.929825;PAO=0;PQA=0;PQR=0;PRO=0;QA=6505;QR=2190;RO=57;RPL=0;RPP=372.161;RPPR=126.784;RPR=170;RUN=1;SAF=170;SAP=372.161;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:85:16,69:16:601:69:2638:-211.98,0,-28.8376 1/1:60:5,55:5:192:55:2087:-170.421,-0.411792,0 0/1:82:36,46:36:1397:46:1780:-135.752,0,-101.326 dDocent_Contig_4673 38 . A G 726.392 . AB=0.0754717;ABP=85.9769;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=5M4D1X14M;DP=76;DPB=76.3333;DPRA=0;EPP=11.6962;EPPR=52.9542;GTI=0;LEN=1;MEANALT=6;MQM=60;MQMR=60;NS=3;NUMALT=6;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=855;RO=23;RPL=0;RPP=11.6962;RPPR=52.9542;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:23:11,0,2,0,1,8,0:11:397:0,2,0,1,8,0:0,14,0,38,308,0:-22.1199,-25.4312,-57.8528,-24.8219,-57.2202,-56.6181,-25.4312,-57.8528,-57.2202,-57.8528,-22.3086,-54.7343,-54.1028,-54.7343,-54.4333,0,-32.5388,-31.9177,-32.5388,-29.4173,-30.1305,-25.4312,-57.8528,-57.2202,-57.8528,-54.7343,-32.5388,-57.8528 0|0:36:3,4,0,2,4,13,7:3:113:4,0,2,4,13,7:156,0,78,158,474,263:-50.1092,-38.1836,-46.2422,-51.0123,-47.4463,-60.2742,-44.5987,-41.0324,-53.861,-53.2589,-38.0056,-34.439,-47.2684,-40.8545,-46.0642,-12.2866,-8.71848,-21.551,-15.1357,-8.54014,-17.6376,-29.4674,-25.9004,-38.7306,-32.3163,-25.7223,0,-36.6234 0|1:17:9,0,0,2,2,2,2:9:345:0,0,2,2,2,2:0,0,81,77,79,72:-3.9761,-6.68537,-35.0003,-6.68537,-35.0003,-35.0003,0,-28.3185,-28.3185,-27.7164,-0.363676,-28.6782,-28.6782,-21.9959,-28.0761,-0.181503,-28.498,-28.498,-21.8155,-22.1756,-27.8959,-0.820001,-29.1295,-29.1295,-22.4478,-22.8079,-22.6275,-28.5274 dDocent_Contig_4674 197 . A G 49.0417 . AB=0.666667;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=25;DPB=25;DPRA=0.272727;EPP=7.35324;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=74;QR=839;RO=23;RPL=2;RPP=7.35324;RPPR=52.9542;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:356:0:0:0,-3.0103,-32.378 0/0:12:12,0:12:444:0:0:0,-3.61236,-40.3037 0/1:3:1,2:1:39:2:74:-6.12234,0,-2.99347 dDocent_Contig_4675 91 . C A 40.3203 . AB=0.4;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=26;DPB=26;DPRA=0.47619;EPP=7.35324;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=68;QR=837;RO=24;RPL=2;RPP=7.35324;RPPR=55.1256;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:5:3,2:3:105:2:68:-4.95278,0,-8.29101 0/0:8:8,0:8:279:0:0:0,-2.40824,-25.449 0/0:13:13,0:13:453:0:0:0,-3.91339,-41.1028 dDocent_Contig_4676 26 . G A 48.3761 . AB=0.115789;ABP=124.818;AC=1;AF=0.166667;AN=6;AO=17;CIGAR=1X;DP=291;DPB=291;DPRA=0;EPP=13.3567;EPPR=17.826;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.176471;PAIREDR=0.284133;PAO=0;PQA=0;PQR=0;PRO=0;QA=595;QR=9967;RO=271;RPL=0;RPP=39.9253;RPPR=373.403;RPR=17;RUN=1;SAF=4;SAP=13.3567;SAR=13;SRF=157;SRP=17.826;SRR=114;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:78:75,2:75:2764:2:72:0,-16.7358,-242.076 0/0:118:114,4:114:4179:4:144:0,-22.2091,-362.86 0/1:95:82,11:82:3024:11:379:-6.05945,0,-243.921 dDocent_Contig_4677 13 . T C 179.65 . AB=0.318182;ABP=9.32731;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=92;DPB=92;DPRA=0;EPP=24.725;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=53;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.5;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=407;QR=3262;RO=82;RPL=0;RPP=24.725;RPPR=181.071;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:29,2:29:1160:2:82:0,-1.59241,-96.9432 0/1:22:15,7:15:593:7:284:-19.1867,0,-47.0831 0/0:39:38,1:38:1509:1:41:0,-7.66674,-131.979 dDocent_Contig_4678 31 . T C 163.911 . AB=0.352941;ABP=6.20364;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=58;DPB=58;DPRA=0.829268;EPP=16.0391;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=2033;RO=52;RPL=0;RPP=16.0391;RPPR=115.927;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:11,6:11:416:6:245:-17.312,0,-32.6627 0/0:21:21,0:21:820:0:0:0,-6.32163,-74.1205 0/0:20:20,0:20:797:0:0:0,-6.0206,-72.0494 dDocent_Contig_4679 55 . G T 219.058 . AB=0.458333;ABP=3.37221;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=56;DPB=56;DPRA=6.5;EPP=29.068;EPPR=81.9729;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=365;QR=1656;RO=44;RPL=12;RPP=29.068;RPPR=81.9729;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4,0:4:149:0:0:0,-1.20412,-13.7733 0/0:28:27,1:27:1011:1:31:0,-5.32939,-88.1772 0/1:24:13,11:13:496:11:334:-23.1273,0,-37.7568 dDocent_Contig_4681 16 . T C 58.6072 . AB=0.428571;ABP=3.32051;AC=4;AF=0.666667;AN=6;AO=3;CIGAR=1X2M1X;DP=8;DPB=8;DPRA=3.5;EPP=9.52472;EPPR=11.6962;GTI=0;LEN=1;MEANALT=1;MQM=37.3333;MQMR=36;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=154;RO=4;RPL=0;RPP=9.52472;RPPR=11.6962;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=4;SRP=11.6962;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:5:3,2:3:115:2:78:-4.99969,0,-8.01373 0|1:2:1,1:1:39:1:39:-3.04406,0,-2.82154 1|1:1:0,0:0:0:0:0:0,0,0 dDocent_Contig_4683 134 . G T 183.93 . AB=0.25;ABP=24.725;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=114;DPB=114;DPRA=1.08108;EPP=24.725;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=348;QR=3554;RO=104;RPL=0;RPP=24.725;RPPR=228.843;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=228.843;SRR=104;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:933:0:0:0,-8.42884,-84.2735 0/0:46:46,0:46:1573:0:0:0,-13.8474,-141.861 0/1:40:30,10:30:1048:10:348:-19.6148,0,-82.5915 dDocent_Contig_4684 12 . T A 40.5568 . 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AB=0.111111;ABP=62.1226;AC=2;AF=0.333334;AN=6;AO=5;CIGAR=2X4M1I2M1X3M2X2M;DP=79;DPB=80.3125;DPRA=0;EPP=13.8677;EPPR=113.755;GTI=0;LEN=1;MEANALT=3.5;MQM=44;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=1979;RO=51;RPL=0;RPP=13.8677;RPPR=113.755;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:21:18,0,0,0,3:18:695:0,0,0,3:0,0,0,120:-4.46652,-9.88506,-66.959,-9.88506,-66.959,-66.959,-9.88506,-66.959,-66.959,-66.959,0,-57.4593,-57.4593,-57.4593,-56.5562 0|1:24:14,3,2,1,2:14:536:3,2,1,2:118,79,29,77:-1.97451,-2.27142,-45.4201,0,-40.1625,-43.4861,-4.14974,-44.2894,-42.0529,-47.9141,-0.0325589,-40.1948,-37.9573,-42.0852,-43.5184 0|0:34:19,8,2,4,0:19:748:8,2,4,0:312,62,115,0:-2.59472,0,-59.2157,-3.86655,-57.1942,-64.9166,-0.189625,-53.5368,-57.4207,-60.6503,-8.31429,-61.6239,-65.5186,-61.8544,-69.9531 dDocent_Contig_4686 113 . G T 85.9667 . 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AB=0.5;ABP=3.0103;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=25;DPB=25;DPRA=1.28571;EPP=22.5536;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=320;QR=549;RO=16;RPL=0;RPP=22.5536;RPPR=37.7539;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:4:3,1:3:96:1:35:-2.29451,0,-7.75338 0/1:14:6,8:6:209:8:285:-21.78,0,-14.9366 0/0:7:7,0:7:244:0:0:0,-2.10721,-22.3001 dDocent_Contig_4694 114 . C T 126.531 . AB=0.304348;ABP=10.6577;AC=2;AF=0.5;AN=4;AO=7;CIGAR=1X;DP=23;DPB=23;DPRA=0;EPP=18.2106;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=526;RO=16;RPL=0;RPP=18.2106;RPPR=37.7539;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:6,1:6:202:1:35:-1.39142,0,-16.4033 ./.:.:.:.:.:.:.:. 0/1:16:10,6:10:324:6:204:-13.8771,0,-24.6577 dDocent_Contig_4695 7 . T A 647.33 . AB=0.303797;ABP=29.4253;AC=3;AF=0.5;AN=6;AO=24;CIGAR=2X4M;DP=79;DPB=79;DPRA=0;EPP=55.1256;EPPR=65.983;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=1.38778e-17;PAIRED=0.958333;PAIREDR=0.655172;PAO=0;PQA=0;PQR=0;PRO=0;QA=906;QR=1128;RO=29;RPL=0;RPP=55.1256;RPPR=65.983;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:9:2,3,4,0:2:76:3,4,0:112,154,0:-14.9799,-6.41659,-11.7449,-2.93065,0,-7.96221,-15.5819,-12.648,-9.16633,-21.815 0|1:40:18,7,9,6:18:697:7,9,6:271,343,230:-22.7167,-5.87132,-61.0255,0,-34.9971,-54.5503,-9.25776,-44.2555,-38.3828,-64.7119 0|1:30:9,8,11,2:9:355:8,11,2:315,409,78:-30.7529,-7.54029,-34.3498,0,-3.29571,-25.8991,-27.0496,-30.3456,-22.7991,-55.6615 dDocent_Contig_4696 29 . G C 35.4784 . AB=0.2;ABP=10.8276;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=26;DPB=26;DPRA=1.25;EPP=7.35324;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.916667;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=944;RO=24;RPL=0;RPP=7.35324;RPPR=55.1256;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:429:0:0:0,-3.31133,-38.9601 0/0:5:5,0:5:193:0:0:0,-1.50515,-17.7382 0/1:10:8,2:8:322:2:82:-4.76938,0,-26.3386 dDocent_Contig_4697 7 . T C 3473.51 . AB=0.123711;ABP=122.307;AC=0;AF=0;AN=6;AO=12;CIGAR=1X2M1X4M1X2M;DP=276;DPB=273.636;DPRA=0;EPP=29.068;EPPR=237.529;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=442;QR=4171;RO=108;RPL=0;RPP=29.068;RPPR=237.529;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:97:37,0,12,1,46:37:1415:0,12,1,46:0,442,38,1829:-139.469,-150.607,-266.714,-114.47,-230.574,-226.962,-147.491,-263.598,-227.458,-263.297,0,-116.121,-79.9813,-113.005,-102.274 0|0:92:47,5,0,8,28:47:1812:5,0,8,28:198,0,305,1114:-77.5807,-75.4319,-222.714,-91.7292,-224.219,-240.517,-66.7122,-199.2,-215.498,-213.089,0,-132.492,-148.79,-123.771,-140.361 0|0:87:24,0,0,16,43:24:944:0,0,16,43:0,0,639,1715:-134.018,-141.242,-218.896,-141.242,-218.896,-218.896,-88.6114,-166.266,-166.266,-161.449,0,-77.6593,-77.6593,-25.0243,-64.715 dDocent_Contig_4698 17 . A T 141.012 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X1M1X;DP=13;DPB=13;DPRA=0.666667;EPP=7.35324;EPPR=18.2106;GTI=0;LEN=1;MEANALT=2;MQM=40;MQMR=37.2857;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=273;RO=7;RPL=0;RPP=7.35324;RPPR=18.2106;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=7;SRP=18.2106;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:4:0,2,0,2:0:0:2,0,2:78,0,81:-12.4279,-6.47079,-5.86873,-12.4279,-6.47079,-12.4279,-6.32557,0,-6.32557,-5.72351 0|0:3:1,0,2,0:1:39:0,2,0:0,80,0:-3.98472,-4.28575,-7.30202,0,-3.34509,-2.74303,-4.28575,-7.30202,-3.34509,-7.30202 0|0:6:6,0,0,0:6:234:0,0,0:0,0,0:0,-1.80618,-18.6302,-1.80618,-18.6302,-18.6302,-1.80618,-18.6302,-18.6302,-18.6302 dDocent_Contig_4699 46 . A C 62.3798 . AB=0.230769;ABP=11.1951;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=36;DPB=36;DPRA=5.5;EPP=11.6962;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=153;QR=1241;RO=32;RPL=0;RPP=11.6962;RPPR=72.4974;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:19,1:19:730:1:31:0,-2.92115,-62.9199 0/0:3:3,0:3:122:0:0:0,-0.90309,-11.3725 0/1:13:10,3:10:389:3:122:-7.4591,0,-31.4431 dDocent_Contig_4700 50 . A T 1052.92 . AB=0.425532;ABP=7.53805;AC=3;AF=0.5;AN=6;AO=40;CIGAR=1X;DP=94;DPB=94;DPRA=0;EPP=89.8692;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1510;QR=2131;RO=54;RPL=40;RPP=89.8692;RPPR=120.27;RPR=0;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:14,9:14:552:9:338:-23.8439,0,-43.0995 0/1:19:17,2:17:662:2:71:-1.02151,0,-54.1899 0/1:52:23,29:23:917:29:1101:-83.7103,0,-67.1832 dDocent_Contig_4701 7 . T C 1753.65 . 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AB=0;ABP=0;AC=0;AF=0;AN=6;AO=2;CIGAR=1X2M1X;DP=102;DPB=102;DPRA=1.2;EPP=7.35324;EPPR=174.956;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=59.069;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=0;PAIREDR=0.827586;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=3396;RO=87;RPL=0;RPP=7.35324;RPPR=191.928;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=85;SRP=174.956;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:36:33,2,1:33:1280:2,1:82,40:0,-3.15924,-107.705,-6.6422,-105.012,-111.48 0|0:36:26,0,10:26:1012:0,10:0,380:-23.1634,-30.9902,-112.021,0,-81.4066,-78.3963 0|0:30:28,0,2:28:1104:0,2:0,77:0,-8.42884,-99.256,-1.7227,-92.9352,-92.3331 dDocent_Contig_4703 72 . T C 51.9143 . 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AB=0.2;ABP=18.6449;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=38;DPB=38;DPRA=0;EPP=13.8677;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.848485;PAO=0;PQA=0;PQR=0;PRO=0;QA=175;QR=1228;RO=33;RPL=5;RPP=13.8677;RPPR=74.6689;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:9,1:9:344:1:39:-0.886264,0,-28.3052 0/1:10:7,3:7:262:3:98:-6.12991,0,-20.9267 0/0:18:17,1:17:622:1:38:0,-1.62127,-52.5062 dDocent_Contig_4724 15 . C A 71.4746 . AB=0.210526;ABP=16.8392;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=37;DPB=37;DPRA=0.527778;EPP=11.6962;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=1338;RO=33;RPL=0;RPP=11.6962;RPPR=74.6689;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:730:0:0:0,-5.41854,-66.0245 0/1:9:8,1:8:324:1:40:-1.28641,0,-26.8201 0/1:10:7,3:7:284:3:121:-8.26969,0,-22.9231 dDocent_Contig_4725 25 . T A 786.193 . 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T A 444.62 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=13;CIGAR=1X13I3M1X;DP=14;DPB=50.4;DPRA=0;EPP=31.2394;EPPR=0;GTI=0;LEN=1;MEANALT=1.33333;MQM=57.3077;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=481;QR=0;RO=0;RPL=0;RPP=31.2394;RPPR=0;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:5:0,5:0:0:5:185:-17.003,-1.50515,0 1|1:5:0,4:0:0:4:146:-13.1345,-1.20412,0 1|1:4:0,4:0:0:4:150:-13.8465,-1.20412,0 dDocent_Contig_4727 21 . T C 1482.33 . AB=0.526316;ABP=3.58174;AC=3;AF=0.5;AN=6;AO=50;CIGAR=1X;DP=95;DPB=95;DPRA=0;EPP=111.584;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1995;QR=1808;RO=45;RPL=0;RPP=111.584;RPPR=100.727;RPR=50;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:19,19:19:767:19:766:-57.8198,0,-57.9126 0/1:16:9,7:9:359:7:285:-21.2079,0,-27.8554 0/1:41:17,24:17:682:24:944:-72.9216,0,-49.3676 dDocent_Contig_4728 62 . C A 49.2061 . 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AB=0.0833333;ABP=111.584;AC=0;AF=0;AN=6;AO=6;CIGAR=2M1X3M;DP=280;DPB=262.333;DPRA=0;EPP=16.0391;EPPR=194.1;GTI=0;LEN=1;MEANALT=6;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=3397;RO=88;RPL=0;RPP=16.0391;RPPR=194.1;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:79:27,39,0,12,0:27:1039:39,0,12,0:1394,0,460,0:-105.464,0,-73.565,-113.592,-85.3052,-198.903,-75.8306,-47.5505,-161.145,-157.533,-113.592,-85.3052,-198.903,-161.145,-198.903 0|0:72:27,25,2,8,6:27:1034:25,2,8,6:897,75,307,234:-64.993,0,-77.3395,-66.9767,-78.7218,-151.239,-47.9166,-59.6642,-126.64,-130.375,-53.8813,-65.628,-132.604,-113.546,-136.941 0|0:129:34,60,11,10,0:34:1324:60,11,10,0:2224,371,389,0:-170.849,0,-90.7668,-151.028,-78.7762,-256.54,-149.113,-76.8575,-227.881,-254.927,-181.084,-108.829,-259.851,-257.938,-289.908 dDocent_Contig_4731 22 . C T 52.5606 . AB=0.103774;ABP=147.557;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=136;DPB=136;DPRA=0;EPP=31.2394;EPPR=270.101;GTI=0;LEN=1;MEANALT=1;MQM=59.4615;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.461538;PAIREDR=0.95935;PAO=0;PQA=0;PQR=0;PRO=0;QA=511;QR=4948;RO=123;RPL=0;RPP=31.2394;RPPR=270.101;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:49,5:49:1979:5:197:-1.84782,0,-162.045 0/0:30:28,2:28:1130:2:81:0,-1.34755,-94.2988 0/1:52:46,6:46:1839:6:233:-5.6782,0,-150.059 dDocent_Contig_4732 41 . G C 2694.57 . AB=0.577922;ABP=11.1322;AC=3;AF=0.5;AN=6;AO=89;CIGAR=1X1M1X;DP=154;DPB=154;DPRA=0;EPP=196.271;EPPR=128.956;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3522;QR=2290;RO=58;RPL=0;RPP=196.271;RPPR=128.956;RPR=89;RUN=1;SAF=89;SAP=196.271;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:33:27,6,0:27:1050:6,0:240,0:-12.0418,0,-84.8583,-20.1696,-86.6645,-106.437 0|1:34:5,29,0:5:203:29,0:1139,0:-92.5595,0,-8.41803,-94.0647,-17.1479,-110.809 0|1:87:26,54,7:26:1037:54,7:2143,278:-168.573,0,-69.1432,-153.514,-62.514,-236.805 dDocent_Contig_4733 37 . C G 125.237 . AB=0.294118;ABP=9.26925;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=46;DPB=46;DPRA=1.17241;EPP=13.8677;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=1639;RO=41;RPL=0;RPP=13.8677;RPPR=92.0407;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:12,5:12:471:5:202:-13.4446,0,-37.6183 0/0:13:13,0:13:525:0:0:0,-3.91339,-47.5972 0/0:16:16,0:16:643:0:0:0,-4.81648,-58.205 dDocent_Contig_4734 7 . T A 3752.16 . AB=0.0604396;ABP=308.448;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=3X;DP=182;DPB=182;DPRA=0;EPP=26.8965;EPPR=57.2971;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=406;QR=950;RO=25;RPL=0;RPP=26.8965;RPPR=57.2971;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:63:13,4,0,43,0,3:13:496:4,0,43,0,3:141,0,1644,0,113:-130.994,-123.429,-162.918,-134.907,-164.122,-175.6,0,-29.2323,-40.7071,-27.7628,-134.907,-164.122,-175.6,-40.7071,-175.6,-125.88,-155.095,-166.573,-31.6802,-166.573,-165.67 1|0:30:2,3,6,15,2,2:2:76:3,6,15,2,2:112,230,570,75,78:-49.1353,-40.5625,-45.896,-41.8877,-38.9512,-46.3146,-2.94357,0,-1.37594,-4.67364,-43.5909,-40.6524,-41.9776,-3.03383,-49.2252,-43.3901,-40.4516,-41.7767,-2.83221,-43.48,-49.0245 0|0:89:10,4,0,65,0,9:10:378:4,0,65,0,9:153,0,2464,0,341:-198.797,-189.252,-219.033,-201.807,-220.237,-232.793,0,-18.4338,-30.992,-11.425,-201.807,-220.237,-232.793,-30.992,-232.793,-173.951,-192.381,-204.936,-3.13047,-204.936,-202.227 dDocent_Contig_4736 95 . T C 1773.05 . AB=0.5;ABP=3.0103;AC=3;AF=0.5;AN=6;AO=74;CIGAR=1X;DP=148;DPB=148;DPRA=0;EPP=163.699;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2496;QR=2475;RO=74;RPL=74;RPP=163.699;RPPR=163.699;RPR=0;RUN=1;SAF=74;SAP=163.699;SAR=0;SRF=0;SRP=163.699;SRR=74;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:27,27:27:886:27:901:-65.1417,0,-63.7859 0/1:50:25,25:25:832:25:850:-61.7609,0,-60.1375 0/1:44:22,22:22:757:22:745:-54.1194,0,-55.2034 dDocent_Contig_4738 13 . A G 203.433 . AB=0.444444;ABP=3.49285;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=49;DPB=49;DPRA=1.16129;EPP=20.3821;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=296;QR=1643;RO=41;RPL=0;RPP=20.3821;RPPR=92.0407;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:642:0:0:0,-4.81648,-58.1149 0/0:15:15,0:15:601:0:0:0,-4.51545,-54.4284 0/1:18:10,8:10:400:8:296:-21.5652,0,-30.9382 dDocent_Contig_4739 16 . G C 121.293 . AB=0.166667;ABP=55.1256;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=76;DPB=76;DPRA=0;EPP=29.068;EPPR=133.434;GTI=0;LEN=1;MEANALT=1;MQM=33.3333;MQMR=46.9688;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.71875;PAO=0;PQA=0;PQR=0;PRO=0;QA=489;QR=2534;RO=64;RPL=0;RPP=29.068;RPPR=141.985;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=63;SRP=133.434;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:15,4:15:587:4:163:-8.09747,0,-43.4958 0/0:22:19,3:19:736:3:123:0,-2.42561,-55.1803 0/1:35:30,5:30:1211:5:203:-6.35053,0,-79.3234 dDocent_Contig_4740 29 . A G 40.1287 . AB=0.176471;ABP=18.4661;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=51;DPB=51;DPRA=1;EPP=9.52472;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=111;QR=1902;RO=48;RPL=0;RPP=9.52472;RPPR=107.241;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:1111:0:0:0,-8.42884,-100.282 0/0:6:6,0:6:238:0:0:0,-1.80618,-21.7942 0/1:17:14,3:14:553:3:111:-5.23459,0,-44.9966 dDocent_Contig_4741 14 . C A 70.3506 . AB=0.2;ABP=18.6449;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=21;DPB=21;DPRA=10;EPP=11.6962;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=689;RO=17;RPL=0;RPP=11.6962;RPPR=39.9253;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:6,2:6:243:2:80:-5.18333,0,-19.8399 0/1:12:10,2:10:405:2:82:-4.16732,0,-33.1983 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_4742 51 . A T 407.821 . AB=0.340426;ABP=13.4056;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=2X;DP=68;DPB=68;DPRA=1.11905;EPP=37.7539;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=628;QR=2016;RO=52;RPL=16;RPP=37.7539;RPPR=115.927;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:8,11:8:314:11:431:-33.4251,0,-22.9054 0|1:28:23,5:23:891:5:197:-9.67574,0,-72.0706 0|0:21:21,0:21:811:0:0:0,-6.32163,-73.3058 dDocent_Contig_4743 22 . C T 89.5483 . AB=0.266667;ABP=10.1038;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=48;DPB=48;DPRA=0.909091;EPP=11.6962;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=1755;RO=44;RPL=0;RPP=11.6962;RPPR=98.5551;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:949:0:0:0,-7.22472,-85.714 0/1:15:11,4:11:442:4:159:-10.1767,0,-35.6199 0/0:9:9,0:9:364:0:0:0,-2.70927,-33.1244 dDocent_Contig_4744 11 . A G 12665.9 . AB=0.32926;ABP=375.992;AC=3;AF=0.5;AN=6;AO=485;CIGAR=1X;DP=1473;DPB=1473;DPRA=0;EPP=954.523;EPPR=2079.26;GTI=0;LEN=1;MEANALT=1.66667;MQM=59;MQMR=59.1102;NS=3;NUMALT=1;ODDS=0;PAIRED=0.552577;PAIREDR=0.860204;PAO=0;PQA=0;PQR=0;PRO=0;QA=19099;QR=38901;RO=980;RPL=0;RPP=1056.17;RPPR=2131.05;RPR=485;RUN=1;SAF=473;SAP=954.523;SAR=12;SRF=974;SRP=2079.26;SRR=6;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:539:356,182:356:14133:182:7174:-480.332,0,-1106.48 0/1:557:358,192:358:14167:192:7497:-506.81,0,-1106.67 0/1:377:266,111:266:10601:111:4428:-283.162,0,-817.88 dDocent_Contig_4745 18 . A G 96.1053 . AB=0.0735294;ABP=110.434;AC=0;AF=0;AN=6;AO=5;CIGAR=1M1X11M;DP=220;DPB=218.538;DPRA=0.918919;EPP=13.8677;EPPR=273.781;GTI=0;LEN=1;MEANALT=10;MQM=60;MQMR=57.7639;NS=3;NUMALT=7;ODDS=0;PAIRED=0;PAIREDR=0.291667;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=5569;RO=144;RPL=0;RPP=13.8677;RPPR=315.702;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=139;SRP=273.781;SRR=5;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:68:41,0,5,0,0,2,6,4:41:1587:0,5,0,0,2,6,4:0,201,0,0,71,243,161:-7.70069,-20.0429,-149.98,-3.47491,-133.414,-131.909,-20.0429,-149.98,-133.414,-149.98,-20.0429,-149.98,-133.414,-149.98,-149.98,-14.2603,-144.196,-127.63,-144.196,-144.196,-143.593,0,-129.94,-113.375,-129.94,-129.94,-124.156,-128.134,-6.86301,-136.801,-120.236,-136.801,-136.801,-131.017,-116.762,-135.597 0|0:74:55,0,0,3,2,1,5,2:55:2105:0,0,3,2,1,5,2:0,0,116,72,40,194,80:0,-16.5566,-188.458,-16.5566,-188.458,-188.458,-7.02887,-178.93,-178.93,-178.027,-11.227,-183.123,-183.123,-173.595,-182.521,-13.2608,-185.162,-185.162,-175.635,-179.828,-184.861,-0.624387,-172.526,-172.526,-162.998,-167.191,-169.231,-171.021,-10.1321,-182.034,-182.034,-172.506,-176.699,-178.738,-166.102,-181.432 0|0:78:48,5,0,4,7,4,4,0:48:1877:5,0,4,7,4,4,0:131,0,163,252,154,142,0:-4.22696,-9.76358,-161.654,-18.6764,-163.159,-172.082,-5.21734,-149.71,-158.633,-157.429,0,-144.487,-153.409,-139.96,-151.302,-6.12818,-150.618,-159.541,-146.091,-140.868,-158.337,-7.37992,-151.867,-160.789,-147.34,-142.117,-148.248,-159.585,-18.6764,-163.159,-172.082,-158.633,-153.409,-159.541,-160.789,-172.082 dDocent_Contig_4746 8 . A G 288.683 . AB=0.254902;ABP=29.6215;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=51;DPB=51;DPRA=0;EPP=31.2394;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.789474;PAO=0;PQA=0;PQR=0;PRO=0;QA=506;QR=1447;RO=38;RPL=0;RPP=31.2394;RPPR=85.5263;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:21,2:21:798:2:78:-0.479783,0,-65.2204 0/1:10:9,1:9:348:1:38:-0.786969,0,-28.67 0/1:18:8,10:8:301:10:390:-30.0402,0,-22.0281 dDocent_Contig_4747 62 . A G 904.951 . AB=0.541667;ABP=3.73412;AC=4;AF=0.666667;AN=6;AO=30;CIGAR=1X1M;DP=52;DPB=52;DPRA=0;EPP=68.1545;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1178;QR=798;RO=20;RPL=30;RPP=68.1545;RPPR=46.4397;RPR=0;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:4:0,0,4:0:0:0,4:0,136:-12.5659,-12.5659,-12.5659,-1.20412,-1.20412,0 0|1:20:8,0,12:8:320:0,12:0,485:-37.9797,-40.388,-66.7464,0,-26.7596,-23.1472 0|1:28:12,2,14:12:478:2,14:75,557:-42.2675,-39.7392,-78.4984,0,-33.2407,-35.1665 dDocent_Contig_4749 12 . C T 10028.7 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=316;CIGAR=1X;DP=330;DPB=330;DPRA=0;EPP=663.385;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=54.1139;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.294304;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=12411;QR=551;RO=14;RPL=0;RPP=689.196;RPPR=33.4109;RPR=316;RUN=1;SAF=313;SAP=663.385;SAR=3;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:105:6,99:6:238:99:3868:-312.181,-9.81488,0 1/1:135:2,133:2:80:133:5202:-427.163,-33.0475,0 1/1:90:6,84:6:233:84:3341:-263.051,-5.7542,0 dDocent_Contig_4750 30 . T A 561.972 . AB=0.359375;ABP=14.0034;AC=3;AF=0.5;AN=6;AO=23;CIGAR=1X;DP=64;DPB=64;DPRA=0;EPP=52.9542;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=868;QR=1611;RO=41;RPL=0;RPP=52.9542;RPPR=92.0407;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:19,13:19:739:13:489:-34.7122,0,-57.202 0/1:22:17,5:17:671:5:181:-10.0146,0,-54.0979 0/1:10:5,5:5:201:5:198:-15.1871,0,-15.4602 dDocent_Contig_4751 16 . A T 110.985 . AB=0.170732;ABP=41.6201;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=91;DPB=91;DPRA=1.64;EPP=18.2106;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.988095;PAO=0;PQA=0;PQR=0;PRO=0;QA=270;QR=3211;RO=84;RPL=0;RPP=18.2106;RPPR=185.414;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:781:0:0:0,-6.0206,-70.613 0/0:30:30,0:30:1135:0:0:0,-9.0309,-102.447 0/1:41:34,7:34:1295:7:270:-12.3204,0,-104.493 dDocent_Contig_4752 16 . T A 88.5587 . AB=0.1875;ABP=16.582;AC=2;AF=0.333334;AN=6;AO=3;CIGAR=1M2I1M1X;DP=35;DPB=38.6667;DPRA=2.28571;EPP=9.52472;EPPR=59.4686;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=1039;RO=26;RPL=0;RPP=9.52472;RPPR=59.4686;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:7:7,0,0:7:271:0,0:0,0:0,-2.10721,-24.7538,-2.10721,-24.7538,-24.7538 0|1:16:9,3,3:9:366:3,3:119,119:-7.08616,-0.0690805,-29.3603,0,-20.4697,-29.2925 0|1:12:10,2,0:10:402:2,0:80,0:-3.97943,0,-32.9279,-6.98973,-33.5299,-40.1198 dDocent_Contig_4753 9 . T C 46.6893 . AB=0.3;ABP=6.48466;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=2X1M1X2M;DP=25;DPB=25;DPRA=1.33333;EPP=9.52472;EPPR=44.2683;GTI=0;LEN=1;MEANALT=2;MQM=11;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=33;QR=704;RO=19;RPL=0;RPP=9.52472;RPPR=44.2683;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:10:4,3,3:4:139:3,3:110,33:-5.5896,0,-10.5462,-5.59193,-10.2615,-16.024 0|0:7:7,0,0:7:264:0,0:0,0:0,-2.10721,-24.1196,-2.10721,-24.1196,-24.1196 0|0:8:8,0,0:8:301:0,0:0,0:0,-2.40824,-27.4443,-2.40824,-27.4443,-27.4443 dDocent_Contig_4754 15 . A C 303.211 . AB=0.2;ABP=14.7363;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=28;DPB=28;DPRA=1.83333;EPP=24.725;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=389;QR=706;RO=18;RPL=0;RPP=24.725;RPPR=42.0968;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:238:0:0:0,-1.80618,-21.7945 1/1:7:0,7:0:0:7:271:-24.7551,-2.10721,0 0/1:15:12,3:12:468:3:118:-6.48675,0,-37.9534 dDocent_Contig_4755 1 . N G 904.868 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=25;CIGAR=1X;DP=25;DPB=25;DPRA=0;EPP=57.2971;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=6.77626e-21;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=988;QR=0;RO=0;RPL=0;RPP=57.2971;RPPR=0;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:234:-21.4304,-1.80618,0 1/1:10:0,10:0:0:10:391:-35.5448,-3.0103,0 1/1:9:0,9:0:0:9:363:-33.0343,-2.70927,0 dDocent_Contig_4756 24 . C G 263.784 . AB=0.37037;ABP=6.95112;AC=2;AF=0.5;AN=4;AO=10;CIGAR=1X;DP=27;DPB=27;DPRA=0;EPP=24.725;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=0.941176;PAO=0;PQA=0;PQR=0;PRO=0;QA=402;QR=687;RO=17;RPL=0;RPP=24.725;RPPR=39.9253;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:20:11,9:11:442:9:361:-26.8333,0,-34.1147 0/1:7:6,1:6:245:1:41:-1.98736,0,-20.3223 dDocent_Contig_4757 7 . G A 116.958 . AB=0.357143;ABP=5.49198;AC=1;AF=0.25;AN=4;AO=5;CIGAR=1X;DP=22;DPB=22;DPRA=1.75;EPP=13.8677;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=185;QR=570;RO=16;RPL=0;RPP=13.8677;RPPR=37.7539;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:9,5:9:298:5:185:-12.7926,0,-22.9222 0/0:8:7,0:7:272:0:0:0,-2.10721,-24.7024 ./.:.:.:.:.:.:.:. dDocent_Contig_4758 116 . A G 34.1466 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=16;DPB=16;DPRA=1.55556;EPP=7.35324;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=71;QR=498;RO=14;RPL=0;RPP=7.35324;RPPR=33.4109;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=33.4109;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2,0:2:70:0:0:0,-0.60206,-6.64733 0/1:7:5,2:5:178:2:71:-4.63485,0,-14.2614 0/0:7:7,0:7:250:0:0:0,-2.10721,-22.8467 dDocent_Contig_4759 7 . G A 1472.51 . AB=0.309645;ABP=65.013;AC=3;AF=0.5;AN=6;AO=61;CIGAR=1X;DP=197;DPB=197;DPRA=0;EPP=135.47;EPPR=293.988;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2323;QR=4717;RO=134;RPL=0;RPP=135.47;RPPR=293.988;RPR=61;RUN=1;SAF=61;SAP=135.47;SAR=0;SRF=134;SRP=293.988;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:72:46,25:46:1659:25:956:-64.7269,0,-127.95 0/1:29:22,7:22:798:7:262:-15.2063,0,-63.4055 0/1:96:66,29:66:2260:29:1105:-71.0348,0,-174.912 dDocent_Contig_4761 114 . T G 2149.29 . AB=0.767857;ABP=37.909;AC=4;AF=0.666667;AN=6;AO=78;CIGAR=1X;DP=91;DPB=91;DPRA=0;EPP=172.385;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.935897;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2591;QR=435;RO=13;RPL=0;RPP=172.385;RPPR=31.2394;RPR=78;RUN=1;SAF=0;SAP=172.385;SAR=78;SRF=0;SRP=31.2394;SRR=13;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:5,20:5:171:20:641:-50.469,0,-8.20098 0/1:31:8,23:8:264:23:752:-58.6554,0,-14.7505 1/1:35:0,35:0:0:35:1198:-108.124,-10.5361,0 dDocent_Contig_4762 7 . G A 696.507 . 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AB=0.25;ABP=11.6962;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=21;DPB=21;DPRA=1.6;EPP=11.6962;EPPR=31.7504;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=640;RO=17;RPL=0;RPP=11.6962;RPPR=31.7504;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:182:0:0:0,-1.50515,-16.7343 0/1:9:6,3:6:221:3:120:-8.47863,0,-17.5341 0/1:7:6,1:6:237:1:41:-1.98736,0,-19.5956 dDocent_Contig_4767 122 . C A 167.45 . AB=0.466667;ABP=3.15506;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=39;DPB=39;DPRA=1.25;EPP=18.2106;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=246;QR=1107;RO=32;RPL=0;RPP=18.2106;RPPR=72.4974;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=72.4974;SRR=32;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:661:0:0:0,-5.71957,-59.8135 0/1:15:8,7:8:270:7:246:-17.9667,0,-20.1132 0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185 dDocent_Contig_4768 13 . G A 155.84 . 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AB=0.285714;ABP=11.386;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=69;DPB=69;DPRA=0.875;EPP=16.0391;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=224;QR=2529;RO=63;RPL=0;RPP=16.0391;RPPR=139.813;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:32,0:32:1282:0:0:0,-9.63296,-115.648 0/0:16:16,0:16:642:0:0:0,-4.81648,-58.1141 0/1:21:15,6:15:605:6:224:-14.1868,0,-48.4646 dDocent_Contig_4772 31 . G T 307.589 . AB=0.352941;ABP=9.39698;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=49;DPB=49;DPRA=0;EPP=31.2394;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.75;PAO=0;PQA=0;PQR=0;PRO=0;QA=508;QR=1430;RO=36;RPL=0;RPP=31.2394;RPPR=37.7539;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=33;SRP=57.2971;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:13,7:13:516:7:278:-19.3685,0,-40.7659 0/1:14:9,5:9:352:5:195:-13.7085,0,-27.8234 0/0:15:14,1:14:562:1:35:0,-1.01682,-47.424 dDocent_Contig_4773 121 . C T 253.651 . AB=0.387097;ABP=6.44263;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=31.2394;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9459;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.972973;PAO=0;PQA=0;PQR=0;PRO=0;QA=438;QR=1231;RO=37;RPL=0;RPP=31.2394;RPPR=83.3548;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=83.3548;SRR=37;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:18,1:18:606:1:34:0,-2.32066,-51.4586 0/1:11:6,5:6:202:5:160:-11.4044,0,-15.1993 0/1:20:13,7:13:423:7:244:-16.2795,0,-32.3621 dDocent_Contig_4775 11 . C A 278.39 . 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AB=0.191489;ABP=41.8658;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=51;DPB=51;DPRA=5.875;EPP=22.5536;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=345;QR=1658;RO=42;RPL=0;RPP=22.5536;RPPR=94.2121;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:30,6:30:1197:6:239:-11.0475,0,-97.1749 0/1:11:8,3:8:298:3:106:-6.57418,0,-23.8529 0/0:4:4,0:4:163:0:0:0,-1.20412,-15.0584 dDocent_Contig_4782 36 . T A 1911.47 . AB=0.0636943;ABP=262.605;AC=0;AF=0;AN=6;AO=10;CIGAR=1M2I7M1X2M;DP=157;DPB=172.273;DPRA=0;EPP=24.725;EPPR=131.127;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=374;QR=2313;RO=59;RPL=0;RPP=24.725;RPPR=131.127;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:76:40,0,3,0,31:40:1564:0,3,0,31:0,119,0,1194:-86.009,-98.0502,-226.636,-88.2528,-216.84,-215.937,-98.0502,-226.636,-216.84,-226.636,0,-128.606,-118.809,-128.606,-119.274 0|0:42:16,4,4,4,14:16:630:4,4,4,14:152,146,144,535:-39.083,-31.4353,-82.0668,-31.9747,-71.3463,-82.6051,-32.1547,-71.526,-72.0645,-82.7847,0,-39.3793,-39.9185,-40.0984,-47.6278 0|0:39:3,14,3,7,12:3:119:14,3,7,12:518,109,273,464:-69.7717,-28.3108,-33.8939,-61.7758,-29.2109,-70.6701,-48.2342,-15.6688,-49.1333,-55.925,-32.5633,0,-33.463,-19.9194,-38.7493 dDocent_Contig_4783 189 . G A 151.604 . AB=0.242424;ABP=22.0271;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=44;DPB=44;DPRA=1.5;EPP=20.3821;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=289;QR=1436;RO=36;RPL=8;RPP=20.3821;RPPR=81.1833;RPR=0;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=81.1833;SRR=36;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:7,6:7:271:6:218:-16.0519,0,-20.8385 0/1:20:18,2:18:720:2:71:-0.719777,0,-59.1064 0/0:11:11,0:11:445:0:0:0,-3.31133,-40.4055 dDocent_Contig_4784 8 . T C 97.0263 . AB=0.190476;ABP=37.9607;AC=2;AF=0.333334;AN=6;AO=13;CIGAR=1M1X2M;DP=54;DPB=54;DPRA=0;EPP=23.2217;EPPR=22.8638;GTI=0;LEN=1;MEANALT=2.66667;MQM=15.2308;MQMR=49.7143;NS=3;NUMALT=5;ODDS=0;PAIRED=0.384615;PAIREDR=0.642857;PAO=0;PQA=0;PQR=0;PRO=0;QA=312;QR=980;RO=28;RPL=0;RPP=31.2394;RPPR=63.8115;RPR=13;RUN=1;SAF=12;SAP=23.2217;SAR=1;SRF=22;SRP=22.8638;SRR=6;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:25:13,0,2,0,3,7:13:471:0,2,0,3,7:0,30,0,24,217:-6.89194,-10.8053,-43.5832,-9.24314,-42.0246,-41.4226,-10.8053,-43.5832,-42.0246,-43.5832,-10.2973,-43.0671,-41.5126,-43.0671,-42.164,0,-32.8623,-31.3097,-32.8623,-32.3603,-30.7551 0|1:17:9,3,0,4,0,1:9:322:3,0,4,0,1:104,0,112,0,35:-5.12835,-3.56353,-23.3032,-7.83761,-24.2062,-28.4763,0,-16.4174,-20.6827,-19.4785,-7.83761,-24.2062,-28.4763,-20.6827,-28.4763,-7.52854,-23.8925,-28.159,-20.3691,-28.159,-27.858 0|0:12:6,0,1,0,0,5:6:187:0,1,0,0,5:0,15,0,0,60:0,-1.80618,-16.9497,-1.0089,-16.1711,-15.8701,-1.80618,-16.9497,-16.1711,-16.9497,-1.80618,-16.9497,-16.1711,-16.9497,-16.9497,-1.46061,-16.6398,-15.8828,-16.6398,-16.6398,-15.1346 dDocent_Contig_4785 51 . T A 515.76 . AB=0.307692;ABP=15.538;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X1M;DP=70;DPB=70;DPRA=0;EPP=29.068;EPPR=94.2121;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=469;QR=1610;RO=42;RPL=12;RPP=29.068;RPPR=94.2121;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:33:16,6,11:16:628:6,11:234,428:-30.3549,-15.9361,-65.7808,0,-32.4163,-48.3393 0|1:31:22,9,0:22:832:9,0:351,0:-22.6153,0,-65.8644,-29.238,-68.5737,-97.4255 0|1:6:4,1,1:4:150:1,1:41,41:-2.17996,0,-11.9568,0,-8.86678,-11.9568 dDocent_Contig_4786 60 . C T 117.574 . AB=0.230769;ABP=27.5646;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=46;DPB=46;DPRA=2.78571;EPP=22.5536;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=280;QR=1221;RO=37;RPL=9;RPP=22.5536;RPPR=83.3548;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:16,5:16:530:5:156:-8.02731,0,-41.6953 0/1:18:14,4:14:466:4:124:-6.04881,0,-36.8413 0/0:7:7,0:7:225:0:0:0,-2.10721,-20.5649 dDocent_Contig_4787 6 . C T 801.731 . AB=0.6;ABP=8.22183;AC=3;AF=0.5;AN=6;AO=36;CIGAR=1X;DP=60;DPB=60;DPRA=0;EPP=81.1833;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=46.2222;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.958333;PAO=0;PQA=0;PQR=0;PRO=0;QA=1214;QR=930;RO=24;RPL=0;RPP=81.1833;RPPR=55.1256;RPR=36;RUN=1;SAF=0;SAP=81.1833;SAR=36;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:9,11:9:351:11:360:-22.934,0,-25.9312 0/1:11:6,5:6:232:5:166:-10.4541,0,-17.9376 0/1:29:9,20:9:347:20:688:-50.5016,0,-22.8594 dDocent_Contig_4788 158 . T C 395.7 . AB=0.681818;ABP=9.32731;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1X;DP=33;DPB=33;DPRA=4;EPP=35.5824;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=520;QR=622;RO=18;RPL=15;RPP=35.5824;RPPR=42.0968;RPR=0;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:7,15:7:222:15:520:-40.4904,0,-13.6653 0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6624 0/0:4:4,0:4:152:0:0:0,-1.20412,-14.049 dDocent_Contig_4789 134 . G A 362.275 . AB=0.421053;ABP=5.06748;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=57;DPB=57;DPRA=1;EPP=37.7539;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=548;QR=1401;RO=41;RPL=0;RPP=37.7539;RPPR=92.0407;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=92.0407;SRR=41;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:654:0:0:0,-5.71957,-59.1824 0/1:10:7,3:7:238:3:102:-6.50665,0,-18.7425 0/1:28:15,13:15:509:13:446:-32.0396,0,-37.7033 dDocent_Contig_4790 8 . T C 54.3345 . AB=0.127273;ABP=69.3784;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=65;DPB=65;DPRA=2.75;EPP=18.2106;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=262;QR=2059;RO=58;RPL=0;RPP=18.2106;RPPR=128.956;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:30,4:30:1083:4:154:-3.99857,0,-87.54 0/1:21:18,3:18:636:3:108:-3.75263,0,-51.2432 0/0:10:10,0:10:340:0:0:0,-3.0103,-30.9236 dDocent_Contig_4791 24 . C A 219.823 . AB=0.1875;ABP=16.582;AC=2;AF=0.5;AN=4;AO=3;CIGAR=3X;DP=34;DPB=34;DPRA=0;EPP=9.52472;EPPR=48.6112;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=2;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.809524;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=823;RO=21;RPL=0;RPP=9.52472;RPPR=48.6112;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:18:13,5,0:13:516:5,0:183,0:-11.4055,0,-41.3679,-15.3189,-42.873,-57.8176 0|1:16:8,5,3:8:307:5,3:189,119:-13.0717,0,-23.6825,-5.67694,-15.3881,-29.9744 .:.:.:.:.:.:.:. dDocent_Contig_4792 8 . T G 76.4776 . AB=0.153846;ABP=43.6001;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=108;DPB=108;DPRA=1.13043;EPP=16.0391;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=225;QR=3316;RO=102;RPL=0;RPP=16.0391;RPPR=224.5;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:851:0:0:0,-7.52575,-76.8902 0/1:39:33,6:33:1115:6:225:-8.86961,0,-88.9026 0/0:44:44,0:44:1350:0:0:0,-13.2453,-121.757 dDocent_Contig_4794 7 . G T 419.001 . AB=0.179487;ABP=142.207;AC=1;AF=0.166667;AN=6;AO=47;CIGAR=1X;DP=404;DPB=404;DPRA=0;EPP=105.07;EPPR=747.924;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=59.6467;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.968661;PAO=0;PQA=0;PQR=0;PRO=0;QA=1523;QR=12093;RO=351;RPL=0;RPP=105.07;RPPR=765.197;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=349;SRP=747.924;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:156:127,28:127:4517:28:995:-42.8209,0,-359.622 0/0:135:124,6:124:4345:6:192:0,-21.8756,-370.87 0/0:113:100,13:100:3231:13:336:0,-3.53257,-260.487 dDocent_Contig_4795 54 . C G 378.036 . AB=0.388889;ABP=6.8707;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=38;DPB=38;DPRA=9;EPP=33.4109;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.916667;PAO=0;PQA=0;PQR=0;PRO=0;QA=558;QR=948;RO=24;RPL=14;RPP=33.4109;RPPR=55.1256;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:13,5:13:517:5:196:-12.5953,0,-41.4561 0/1:18:9,9:9:349:9:362:-27.5256,0,-26.3488 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 dDocent_Contig_4796 14 . G C 10833 . AB=0.749141;ABP=159.901;AC=5;AF=0.833334;AN=6;AO=330;CIGAR=1X4M;DP=412;DPB=412;DPRA=0;EPP=685.274;EPPR=109.412;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=59.8776;NS=3;NUMALT=2;ODDS=0;PAIRED=0.630303;PAIREDR=0.714286;PAO=0;PQA=0;PQR=0;PRO=0;QA=13065;QR=1904;RO=49;RPL=0;RPP=719.596;RPPR=109.412;RPR=330;RUN=1;SAF=326;SAP=685.274;SAR=4;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:121:3,5,112:3:116:5,112:195,4390:-384.269,-369.144,-377.161,-24.1891,-17.674,0 1|1:187:21,21,143:21:819:21,143:829,5700:-463.956,-402.066,-463.061,-0.898432,0,-25.1668 0|1:104:25,3,75:25:969:3,75:114,2975:-237.372,-235.549,-314.246,0,-70.2712,-57.0421 dDocent_Contig_4797 25 . T A 666.232 . AB=0.444444;ABP=4.45795;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=54;DPB=54;DPRA=0;EPP=55.1256;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=950;QR=1165;RO=30;RPL=0;RPP=55.1256;RPPR=68.1545;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:8,5:8:320:5:201:-14.5571,0,-25.2543 0/1:17:9,8:9:358:8:312:-23.3235,0,-27.4637 0/1:24:13,11:13:487:11:437:-32.4592,0,-36.9355 dDocent_Contig_4798 11 . C T 103.678 . AB=0.4;ABP=3.87889;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=27;DPB=27;DPRA=1.17647;EPP=11.6962;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=880;RO=23;RPL=0;RPP=11.6962;RPPR=52.9542;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:414:0:0:0,-3.31133,-37.6056 0/1:10:6,4:6:239:4:158:-11.5896,0,-18.8745 0/0:6:6,0:6:227:0:0:0,-1.80618,-20.7905 dDocent_Contig_4800 24 . T C 233.776 . AB=0.152542;ABP=126.747;AC=3;AF=0.5;AN=6;AO=18;CIGAR=2X;DP=118;DPB=118;DPRA=0;EPP=42.0968;EPPR=217.986;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=684;QR=3809;RO=99;RPL=0;RPP=42.0968;RPPR=217.986;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:51:42,9:42:1615:9:354:-16.8693,0,-130.262 0|1:40:35,4:35:1349:4:150:-1.74591,0,-109.564 0|1:27:22,5:22:845:5:180:-8.41849,0,-68.2418 dDocent_Contig_4801 4 . T G 652.082 . AB=0.133333;ABP=20.5268;AC=0;AF=0;AN=6;AO=2;CIGAR=1X3M1X;DP=44;DPB=44;DPRA=0;EPP=7.35324;EPPR=35.5824;GTI=0;LEN=1;MEANALT=2;MQM=56;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=66;QR=526;RO=15;RPL=0;RPP=7.35324;RPPR=35.5824;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:13:6,0,6:6:207:0,6:0,220:-16.3089,-18.1151,-34.9309,0,-16.931,-15.1248 0|0:15:2,2,11:2:75:2,11:66,398:-31.9094,-27.1824,-32.7259,0,-0.854575,-2.85469 0|0:16:7,0,9:7:244:0,9:0,280:-20.682,-22.7892,-42.6482,0,-20.191,-17.4817 dDocent_Contig_4802 35 . G T 1271.21 . AB=0.107422;ABP=1373.79;AC=3;AF=0.5;AN=6;AO=110;CIGAR=2M1X1M1X2M7D1M;DP=1024;DPB=935.4;DPRA=0;EPP=241.872;EPPR=1288.75;GTI=0;LEN=1;MEANALT=27.6667;MQM=49.9182;MQMR=59.7829;NS=3;NUMALT=3;ODDS=0;PAIRED=0.709091;PAIREDR=0.679276;PAO=0;PQA=0;PQR=0;PRO=0;QA=4272;QR=23200;RO=608;RPL=1;RPP=233.265;RPPR=1254.69;RPR=109;RUN=1;SAF=109;SAP=233.265;SAR=1;SRF=604;SRP=1288.75;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:478:286,16,54,4:286:10862:16,54,4:536,2096,162:-69.7028,-113.671,-998.031,0,-847.05,-872.923,-142.438,-989.489,-875.82,-1030.41 0|1:383:216,21,40,21:216:8252:21,40,21:571,1554,788:-54.4785,-77.4505,-748.19,0,-635.014,-665.031,-54.9663,-689.98,-612.539,-725.716 0|1:163:106,9,16,1:106:4086:9,16,1:252,622,41:-6.65684,-20.3838,-352.677,0,-316.815,-330.187,-35.1806,-352.002,-331.62,-369.891 dDocent_Contig_4803 10 . T G 330.248 . AB=0.318182;ABP=15.6443;AC=1;AF=0.166667;AN=6;AO=17;CIGAR=1X;DP=122;DPB=122;DPRA=3.3125;EPP=39.9253;EPPR=231.015;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=601;QR=3931;RO=105;RPL=0;RPP=39.9253;RPPR=231.015;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:62:59,3:59:2254:3:77:0,-11.4784,-195.883 0/0:16:16,0:16:597:0:0:0,-4.81648,-54.0587 0/1:44:30,14:30:1080:14:524:-34.2466,0,-84.2328 dDocent_Contig_4805 72 . C A 54.5171 . AB=0.2;ABP=18.6449;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=27;DPB=27;DPRA=5.71429;EPP=11.6962;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=134;QR=762;RO=23;RPL=4;RPP=11.6962;RPPR=52.9542;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:16,4:16:529:4:134:-6.36937,0,-41.9056 0/0:1:1,0:1:29:0:0:0,-0.30103,-2.89966 0/0:6:6,0:6:204:0:0:0,-1.80618,-18.6938 dDocent_Contig_4806 25 . A G 386.4 . AB=0.0793651;ABP=293.471;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1X2M2X;DP=189;DPB=189;DPRA=0;EPP=35.5824;EPPR=307.016;GTI=0;LEN=1;MEANALT=3.66667;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=2.77556e-17;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=585;QR=5532;RO=140;RPL=0;RPP=35.5824;RPPR=307.016;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=140;SRP=307.016;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:78:56,3,5,11,2:56:2205:3,5,11,2:117,201,440,80:-19.388,-26.63,-207.116,-19.681,-191.455,-199.567,0,-171.774,-164.826,-178.079,-29.6554,-201.429,-194.482,-174.8,-210.444 0|1:42:32,8,2,0,0:32:1257:8,2,0,0:312,82,0,0:-15.9977,0,-100.958,-18.8586,-96.5969,-121.641,-25.6307,-103.366,-122.243,-129.012,-25.6307,-103.366,-122.243,-129.012,-129.012 0|0:69:52,4,0,5,7:52:2070:4,0,5,7:156,0,182,275:-6.97101,-9.79958,-179.052,-22.6246,-180.256,-193.079,-7.77695,-165.403,-178.225,-176.72,0,-157.638,-170.461,-155.607,-168.353 dDocent_Contig_4808 173 . A G 1805.48 . AB=0.734177;ABP=40.64;AC=3;AF=0.5;AN=6;AO=58;CIGAR=1X;DP=79;DPB=79;DPRA=0;EPP=128.956;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2302;QR=816;RO=21;RPL=58;RPP=128.956;RPPR=48.6112;RPR=0;RUN=1;SAF=0;SAP=128.956;SAR=58;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:7,7:7:259:7:279:-21.2664,0,-19.4435 0/1:10:6,4:6:236:4:123:-8.35737,0,-18.6004 0/1:55:8,47:8:321:47:1900:-154.641,0,-12.7009 dDocent_Contig_4810 13 . G T 2282.28 . AB=0.700935;ABP=40.5342;AC=3;AF=0.5;AN=6;AO=75;CIGAR=1X;DP=107;DPB=107;DPRA=0;EPP=165.871;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.946667;PAIREDR=0.9375;PAO=0;PQA=0;PQR=0;PRO=0;QA=2925;QR=1247;RO=32;RPL=0;RPP=165.871;RPPR=72.4974;RPR=75;RUN=1;SAF=75;SAP=165.871;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:18,28:18:705:28:1104:-85.8037,0,-49.927 0/1:50:11,39:11:429:39:1515:-121.555,0,-23.9094 0/1:11:3,8:3:113:8:306:-24.5865,0,-7.22559 dDocent_Contig_4811 98 . N T 413.546 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=14;CIGAR=1X;DP=14;DPB=14;DPRA=0;EPP=33.4109;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=12.9229;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=456;QR=0;RO=0;RPL=14;RPP=33.4109;RPPR=0;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:14:0,14:0:0:14:456:-41.3546,-4.21442,0 dDocent_Contig_4813 7 . G A 74.8819 . AB=0.363636;ABP=4.78696;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=31;DPB=31;DPRA=1.1;EPP=11.6962;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=130;QR=928;RO=26;RPL=0;RPP=11.6962;RPPR=59.4686;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:14,0:14:513:0:0:0,-4.21442,-46.3793 0/1:11:7,4:7:267:4:130:-8.70986,0,-21.0812 0/0:5:5,0:5:148:0:0:0,-1.50515,-13.6104 dDocent_Contig_4815 7 . G A 282.957 . AB=0.0645161;ABP=258.333;AC=0;AF=0;AN=6;AO=12;CIGAR=1X1M1X;DP=226;DPB=226;DPRA=0;EPP=21.1059;EPPR=82.9771;GTI=0;LEN=1;MEANALT=3.66667;MQM=55;MQMR=56.1366;NS=3;NUMALT=3;ODDS=2.77556e-17;PAIRED=0.833333;PAIREDR=0.521739;PAO=0;PQA=0;PQR=0;PRO=0;QA=456;QR=5513;RO=161;RPL=0;RPP=29.068;RPPR=352.617;RPR=12;RUN=1;SAF=11;SAP=21.1059;SAR=1;SRF=119;SRP=82.9771;SRR=42;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:86:57,6,12,10:57:1935:6,12,10:225,409,341:-9.67414,-8.37729,-161.693,-9.13788,-145.768,-160.589,0,-136.692,-137.398,-152.117 0|0:69:45,4,19,1:45:1589:4,19,1:153,664,35:-20.9403,-23.7033,-150.107,0,-116.781,-121.828,-31.8257,-148.653,-124.891,-159.121 0|0:71:59,2,3,5:59:1989:2,3,5:78,79,169:0,-11.3374,-168.888,-11.7119,-163.42,-168.93,-4.1682,-155.9,-156.244,-160.808 dDocent_Contig_4816 8 . T C 41.7735 . AB=0.166667;ABP=20.3821;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=2X;DP=89;DPB=89;DPRA=0.808824;EPP=11.6962;EPPR=176.728;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.9625;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=2638;RO=80;RPL=0;RPP=11.6962;RPPR=176.728;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:37:34,1,0,2:34:1102:1,0,2:39,0,22:0,-6.93592,-95.7311,-10.235,-96.0321,-99.2401,-9.04353,-94.6661,-97.8738,-97.2718 0|1:18:15,3,0,0:15:517:3,0,0:116,0,0:-5.39916,0,-41.4325,-9.91461,-42.3356,-51.8708,-9.91461,-42.3356,-51.8708,-51.8708 0|0:34:31,0,2,0:31:1019:0,2,0:0,76,0:0,-9.33193,-91.6993,-2.91922,-85.463,-84.8609,-9.33193,-91.6993,-85.463,-91.6993 dDocent_Contig_4817 19 . A G 760.875 . AB=0.4;ABP=9.09042;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X3M;DP=70;DPB=70;DPRA=0;EPP=63.8115;EPPR=61.5258;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.892857;PAIREDR=0.842105;PAO=0;PQA=0;PQR=0;PRO=0;QA=1104;QR=1499;RO=38;RPL=0;RPP=63.8115;RPPR=85.5263;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=35;SRP=61.5258;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:29:15,0,14:15:585:0,14:0,554:-41.4729,-45.9884,-94.0705,0,-48.4747,-44.2603 0|1:22:13,3,6:13:516:3,6:117,227:-14.6845,-8.97658,-50.5645,0,-32.8677,-40.6777 0|1:19:10,1,8:10:398:1,8:37,323:-23.6467,-23.6337,-56.1013,0,-29.7725,-30.3888 dDocent_Contig_4821 98 . N C 384.128 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=16;CIGAR=1X;DP=17;DPB=17;DPRA=0;EPP=37.7539;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=14.3092;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=426;QR=0;RO=0;RPL=16;RPP=37.7539;RPPR=0;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:17:0,16:0:0:16:426:-38.4128,-4.81648,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_4823 12 . G A 63.5421 . AB=0.25;ABP=9.52472;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=25;DPB=25;DPRA=1.84615;EPP=9.52472;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=874;RO=22;RPL=0;RPP=9.52472;RPPR=50.7827;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:400:0:0:0,-3.0103,-36.3559 0/1:12:9,3:9:362:3:120:-7.57533,0,-29.3312 0/0:3:3,0:3:112:0:0:0,-0.90309,-10.4453 dDocent_Contig_4825 80 . A C 352.61 . AB=0.410256;ABP=5.73856;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=39;DPB=39;DPRA=0;EPP=37.7539;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=38.8261;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=577;QR=845;RO=23;RPL=16;RPP=37.7539;RPPR=52.9542;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:12,7:12:443:7:252:-16.3339,0,-30.6036 0/1:12:5,7:5:183:7:257:-18.808,0,-12.4647 0/1:8:6,2:6:219:2:68:-3.83529,0,-16.7691 dDocent_Contig_4826 15 . A G 588.486 . AB=0.25;ABP=59.4686;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X;DP=104;DPB=104;DPRA=0;EPP=59.4686;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1031;QR=3078;RO=78;RPL=0;RPP=59.4686;RPPR=172.385;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:17,10:17:681:10:391:-27.4114,0,-53.4902 0/1:32:24,8:24:960:8:321:-19.6249,0,-77.0692 0/1:45:37,8:37:1437:8:319:-15.5289,0,-116.036 dDocent_Contig_4827 47 . C A 181.1 . AB=0.2;ABP=42.0968;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=73;DPB=73;DPRA=1.08696;EPP=24.725;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=386;QR=2499;RO=63;RPL=0;RPP=24.725;RPPR=139.813;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:36,6:36:1416:6:225:-7.96173,0,-115.054 0/1:8:4,4:4:161:4:161:-12.467,0,-12.467 0/0:23:23,0:23:922:0:0:0,-6.92369,-83.279 dDocent_Contig_4828 13 . C T 273.969 . AB=0.416667;ABP=4.45795;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=34;DPB=34;DPRA=1.2;EPP=10.8276;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=402;QR=965;RO=24;RPL=0;RPP=24.725;RPPR=55.1256;RPR=10;RUN=1;SAF=8;SAP=10.8276;SAR=2;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:3,4:3:118:4:160:-12.6762,0,-8.89551 0/0:10:10,0:10:404:0:0:0,-3.0103,-36.7202 0/1:17:11,6:11:443:6:242:-17.0394,0,-35.1079 dDocent_Contig_4829 34 . A T 570.039 . AB=0.323944;ABP=22.1254;AC=3;AF=0.5;AN=6;AO=23;CIGAR=1X;DP=71;DPB=71;DPRA=0;EPP=52.9542;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=899;QR=1862;RO=48;RPL=0;RPP=52.9542;RPPR=107.241;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:13,7:13:511:7:275:-19.0978,0,-40.3151 0/1:22:9,13:9:340:13:515:-40.0733,0,-24.3253 0/1:29:26,3:26:1011:3:109:-1.43312,0,-82.5601 dDocent_Contig_4830 38 . C G 72.6542 . AB=0.3;ABP=6.48466;AC=1;AF=0.25;AN=4;AO=3;CIGAR=1X;DP=16;DPB=16;DPRA=1.66667;EPP=9.52472;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=523;RO=13;RPL=0;RPP=9.52472;RPPR=31.2394;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:7,3:7:281:3:122:-8.36219,0,-22.6514 0/0:6:6,0:6:242:0:0:0,-1.80618,-22.1569 ./.:.:.:.:.:.:.:. dDocent_Contig_4831 8 . T C 47.4226 . AB=0.128205;ABP=49.8362;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=108;DPB=108;DPRA=2.07143;EPP=22.5536;EPPR=215.815;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=310;QR=3209;RO=98;RPL=0;RPP=22.5536;RPPR=215.815;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:48:44,4:44:1483:4:119:0,-3.4484,-122.741 0/1:39:33,5:33:1120:5:191:-5.9641,0,-89.5302 0/0:21:21,0:21:606:0:0:0,-6.32163,-54.8062 dDocent_Contig_4833 24 . G C 65.4621 . AB=0.166667;ABP=26.1727;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=69;DPB=69;DPRA=1.06667;EPP=11.6962;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=2579;RO=65;RPL=0;RPP=11.6962;RPPR=144.156;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:20,4:20:796:4:159:-7.46703,0,-64.7359 0/0:23:23,0:23:914:0:0:0,-6.92369,-82.5708 0/0:22:22,0:22:869:0:0:0,-6.62266,-78.5191 dDocent_Contig_4835 27 . G T 101.617 . AB=0;ABP=0;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X3M;DP=47;DPB=47;DPRA=17;EPP=7.35324;EPPR=89.8692;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=1570;RO=40;RPL=0;RPP=7.35324;RPPR=89.8692;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:34:31,1,2:31:1215:1,2:35,78:0,-6.49745,-106.104,-2.89381,-99.9938,-102.238 0|0:2:2,0,0:2:73:0,0:0,0:0,-0.60206,-6.9313,-0.60206,-6.9313,-6.9313 0|1:11:7,4,0:7:282:4,0:159,0:-11.3806,0,-22.4413,-13.4878,-23.6454,-36.7342 dDocent_Contig_4836 9 . A G 49.5113 . AB=0.137931;ABP=36.0317;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=2X;DP=71;DPB=71;DPRA=1.26087;EPP=3.0103;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=33;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=2335;RO=64;RPL=0;RPP=11.6962;RPPR=141.985;RPR=4;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:29:25,4,0:25:920:4,0:155,0:-3.09985,0,-74.3732,-10.6256,-75.5773,-85.8765 0|0:19:16,0,3:16:581:0,3:0,106:-4.16693,-8.98341,-56.4312,0,-47.8025,-46.8994 0|0:23:23,0,0:23:834:0,0:0,0:0,-6.92369,-75.3722,-6.92369,-75.3722,-75.3722 dDocent_Contig_4837 8 . T A 270.532 . AB=0.392857;ABP=5.80219;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=31;DPB=31;DPRA=4.66667;EPP=26.8965;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.9;PAO=0;PQA=0;PQR=0;PRO=0;QA=412;QR=696;RO=20;RPL=0;RPP=26.8965;RPPR=46.4397;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:9,6:9:302:6:230:-16.5509,0,-22.9859 0/0:3:3,0:3:111:0:0:0,-0.90309,-10.3535 0/1:13:8,5:8:283:5:182:-12.8204,0,-21.8969 dDocent_Contig_4838 31 . G T 79.4105 . AB=0.266667;ABP=10.1038;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=67;DPB=67;DPRA=0.576923;EPP=11.6962;EPPR=131.265;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.2698;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.936508;PAO=0;PQA=0;PQR=0;PRO=0;QA=148;QR=2514;RO=63;RPL=0;RPP=11.6962;RPPR=139.813;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=62;SRP=131.265;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:35:35,0:35:1388:0:0:0,-10.536,-124.205 0/1:15:11,4:11:443:4:148:-9.1629,0,-35.7103 0/0:17:17,0:17:683:0:0:0,-5.11751,-61.8007 dDocent_Contig_4839 25 . G T 32.2723 . AB=0.130435;ABP=30.2953;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=47;DPB=47;DPRA=1.91667;EPP=9.52472;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1741;RO=44;RPL=0;RPP=9.52472;RPPR=98.5551;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:637:0:0:0,-4.81648,-57.6642 0/1:23:20,3:20:802:3:122:-4.4488,0,-65.573 0/0:8:8,0:8:302:0:0:0,-2.40824,-27.5306 dDocent_Contig_4841 64 . G A 979.025 . AB=0.284091;ABP=74.2741;AC=3;AF=0.5;AN=6;AO=50;CIGAR=1X;DP=176;DPB=176;DPRA=0;EPP=111.584;EPPR=276.616;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.8571;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.912698;PAO=0;PQA=0;PQR=0;PRO=0;QA=1707;QR=4576;RO=126;RPL=50;RPP=111.584;RPPR=276.616;RPR=0;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=126;SRP=276.616;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:75:61,14:61:2199:14:475:-20.4978,0,-175.221 0/1:51:28,23:28:1012:23:785:-55.6138,0,-75.4593 0/1:50:37,13:37:1365:13:447:-25.5076,0,-108.092 dDocent_Contig_4842 9 . A G 328.439 . AB=0.215054;ABP=68.5981;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X;DP=93;DPB=93;DPRA=0;EPP=46.4397;EPPR=128.688;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.6027;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=706;QR=2521;RO=73;RPL=0;RPP=46.4397;RPPR=161.528;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=69;SRP=128.688;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:31,10:31:1107:10:347:-19.2138,0,-86.8052 0/1:31:25,6:25:900:6:226:-11.3705,0,-71.9692 0/1:21:17,4:17:514:4:133:-5.97639,0,-40.2163 dDocent_Contig_4843 7 . G A 406.646 . AB=0.269841;ABP=31.9977;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X5M;DP=63;DPB=63;DPRA=0;EPP=39.9253;EPPR=55.1256;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=625;QR=856;RO=24;RPL=0;RPP=39.9253;RPPR=55.1256;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:20:6,8,5:6:228:8,5:311,185:-13.4153,-9.11972,-25.432,0,-12.6977,-17.2955 0|1:28:10,13,5:10:357:13,5:496,191:-12.7298,-4.01674,-29.1867,0,-17.4201,-27.6912 0|1:15:8,0,7:8:271:0,7:0,249:-18.2361,-20.6444,-42.6028,0,-22.3061,-20.1989 dDocent_Contig_4844 97 . G C 1660.1 . AB=0.588235;ABP=9.90792;AC=3;AF=0.5;AN=6;AO=60;CIGAR=1X;DP=102;DPB=102;DPRA=0;EPP=5.32654;EPPR=4.87156;GTI=0;LEN=1;MEANALT=1;MQM=59.95;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.85;PAIREDR=0.857143;PAO=0;PQA=0;PQR=0;PRO=0;QA=2215;QR=1517;RO=42;RPL=60;RPP=133.299;RPPR=94.2121;RPR=0;RUN=1;SAF=26;SAP=5.32654;SAR=34;SRF=18;SRP=4.87156;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:17,37:17:609:37:1349:-105.419,0,-38.8697 0/1:39:24,15:24:867:15:548:-37.8988,0,-66.5886 0/1:9:1,8:1:41:8:318:-26.275,0,-1.3853 dDocent_Contig_4846 45 . C A 38.5374 . AB=0.15;ABP=24.2907;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=32;DPB=32;DPRA=3.33333;EPP=3.73412;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.862069;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=1136;RO=29;RPL=1;RPP=3.73412;RPPR=65.983;RPR=2;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3,0:3:119:0:0:0,-0.90309,-11.0954 0/0:9:9,0:9:353:0:0:0,-2.70927,-32.1308 0/1:20:17,3:17:664:3:119:-5.07479,0,-54.0727 dDocent_Contig_4847 21 . C G 48.0573 . AB=0.133333;ABP=38.0434;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=57;DPB=57;DPRA=2.22222;EPP=11.6962;EPPR=85.9769;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.90566;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=2098;RO=53;RPL=0;RPP=11.6962;RPPR=118.098;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=49;SRP=85.9769;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:773:0:0:0,-6.0206,-69.8901 0/0:7:7,0:7:277:0:0:0,-2.10721,-25.2987 0/1:30:26,4:26:1048:4:163:-6.02753,0,-85.5776 dDocent_Contig_4848 19 . C T 229.433 . AB=0.209677;ABP=48.4011;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X1M1X;DP=62;DPB=62;DPRA=0;EPP=3.17734;EPPR=102.898;GTI=0;LEN=1;MEANALT=1.66667;MQM=55.6923;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.538462;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=483;QR=1814;RO=46;RPL=0;RPP=31.2394;RPPR=102.898;RPR=13;RUN=1;SAF=6;SAP=3.17734;SAR=7;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:31:28,3,0:28:1095:3,0:112,0:-1.11407,0,-89.511,-9.54291,-90.4141,-99.5822 0|1:20:11,6,2:11:440:6,2:231,80:-15.6768,0,-34.4774,-12.3903,-29.6916,-48.0536 0|1:11:7,4,0:7:279:4,0:140,0:-9.51588,0,-22.1689,-11.6231,-23.373,-34.6307 dDocent_Contig_4849 7 . G A 122.072 . AB=0.152542;ABP=64.8789;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=80;DPB=80;DPRA=1.40476;EPP=22.5536;EPPR=152.842;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.985507;PAO=0;PQA=0;PQR=0;PRO=0;QA=348;QR=2421;RO=69;RPL=0;RPP=22.5536;RPPR=152.842;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:38,4:38:1366:4:154:-1.34197,0,-110.387 0/1:15:10,5:10:375:5:194:-13.3174,0,-29.585 0/0:21:21,0:21:680:0:0:0,-6.32163,-61.4945 dDocent_Contig_4850 7 . G T 97.6646 . AB=0.25;ABP=13.8677;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=54;DPB=54;DPRA=1.08824;EPP=18.2106;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=207;QR=1590;RO=47;RPL=0;RPP=18.2106;RPPR=105.07;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:623:0:0:0,-5.11751,-56.3986 0/1:20:15,5:15:532:5:185:-10.9883,0,-42.1895 0/0:17:15,2:15:435:2:22:0,-3.02752,-37.3343 dDocent_Contig_4852 14 . A T 128.204 . AB=0.184211;ABP=35.9253;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=143;DPB=143;DPRA=0.72381;EPP=18.2106;EPPR=298.331;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=5358;RO=136;RPL=0;RPP=18.2106;RPPR=298.331;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=136;SRP=298.331;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:70:70,0:70:2737:0:0:0,-21.0721,-246.475 0/1:38:31,7:31:1234:7:279:-14.0422,0,-99.8989 0/0:35:35,0:35:1387:0:0:0,-10.536,-125.093 dDocent_Contig_4853 33 . G T 616.935 . AB=0.52381;ABP=3.21711;AC=2;AF=0.333333;AN=6;AO=22;CIGAR=1X;DP=70;DPB=70;DPRA=0.75;EPP=50.7827;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=844;QR=1759;RO=48;RPL=0;RPP=50.7827;RPPR=107.241;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:1022:0:0:0,-8.42884,-92.2907 0/1:17:11,6:11:401:6:225:-15.4917,0,-31.3153 0/1:25:9,16:9:336:16:619:-48.5205,0,-23.0664 dDocent_Contig_4854 165 . T G 280.537 . AB=0.34375;ABP=9.79615;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=32;DPB=32;DPRA=0;EPP=26.8965;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=447;QR=821;RO=21;RPL=11;RPP=26.8965;RPPR=48.6112;RPR=0;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:11,3:11:434:3:122:-7.15807,0,-35.1993 0/1:2:1,1:1:41:1:41:-3.49251,0,-3.49251 0/1:16:9,7:9:346:7:284:-21.1175,0,-26.6764 dDocent_Contig_4855 146 . T A 136.009 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=21;DPB=21;DPRA=1.81818;EPP=13.8677;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=194;QR=636;RO=16;RPL=0;RPP=13.8677;RPPR=37.7539;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:314:0:0:0,-2.40824,-28.624 0/1:10:5,5:5:202:5:194:-14.822,0,-15.5518 0/0:3:3,0:3:120:0:0:0,-0.90309,-11.1873 dDocent_Contig_4856 43 . C T 135.193 . AB=0.384615;ABP=4.51363;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=29;DPB=29;DPRA=1.625;EPP=13.8677;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=896;RO=23;RPL=0;RPP=13.8677;RPPR=52.9542;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:13,0:13:505:0:0:0,-3.91339,-45.6808 0/0:2:2,0:2:80:0:0:0,-0.60206,-7.59179 0/1:13:8,5:8:311:5:203:-14.7397,0,-24.4381 dDocent_Contig_4857 41 . C A 69.7752 . AB=0.333333;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=25;DPB=25;DPRA=1.125;EPP=9.52472;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=876;RO=22;RPL=0;RPP=9.52472;RPPR=50.7827;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:363:0:0:0,-2.70927,-33.0337 0/0:7:7,0:7:278:0:0:0,-2.10721,-25.3902 0/1:9:6,3:6:235:3:117:-8.19931,0,-18.8105 dDocent_Contig_4858 11 . T C 619.963 . AB=0.142857;ABP=41.7866;AC=0;AF=0;AN=6;AO=5;CIGAR=1X3M1X1M;DP=54;DPB=54;DPRA=7;EPP=13.8677;EPPR=57.2971;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=187;QR=924;RO=25;RPL=0;RPP=13.8677;RPPR=57.2971;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:14:11,0,3,0:11:418:0,3,0:0,116,0:-6.60257,-9.9139,-44.1886,0,-34.6596,-33.7565,-9.9139,-44.1886,-34.6596,-44.1886 0|0:35:14,5,0,16:14:506:5,0,16:187,0,588:-43.8435,-32.7453,-72.5377,-48.0579,-74.0428,-89.3553,0,-25.9767,-41.2912,-36.4747 0|0:5:0,0,0,4:0:0:0,0,4:0,0,154:-13.8679,-13.8679,-13.8679,-13.8679,-13.8679,-13.8679,-1.20412,-1.20412,-1.20412,0 dDocent_Contig_4860 22 . G A 214.821 . AB=0.380952;ABP=5.59539;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=2X;DP=50;DPB=50;DPRA=24.5;EPP=24.725;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=397;QR=1376;RO=39;RPL=0;RPP=24.725;RPPR=87.6977;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:28:26,2:26:925:2:78:0,-1.02537,-76.1587 0|1:21:12,8:12:415:8:319:-22.7005,0,-31.3081 0|0:1:1,0:1:36:0:0:0,-0.30103,-3.59827 dDocent_Contig_4861 10 . G T 396.294 . 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AB=0.16129;ABP=33.9012;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=59;DPB=59;DPRA=0.553571;EPP=13.8677;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.0741;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.981481;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=2101;RO=54;RPL=0;RPP=13.8677;RPPR=120.27;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:19,4:19:745:4:160:-7.85974,0,-60.4543 0/0:28:28,0:28:1090:0:0:0,-8.42884,-95.9582 0/1:8:7,1:7:266:1:41:-1.68633,0,-21.892 dDocent_Contig_4863 40 . G C 220.772 . AB=0.294118;ABP=15.5282;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=34;DPB=34;DPRA=0;EPP=24.725;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.8;PAIREDR=0.916667;PAO=0;PQA=0;PQR=0;PRO=0;QA=387;QR=935;RO=24;RPL=0;RPP=24.725;RPPR=55.1256;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:6,7:6:238:7:274:-21.1142,0,-17.8808 0/1:13:11,2:11:428:2:72:-2.92093,0,-34.9587 0/1:8:7,1:7:269:1:41:-1.68633,0,-22.1632 dDocent_Contig_4867 17 . A G 272.43 . 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AB=0.15;ABP=24.2907;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=43;DPB=43;DPRA=1.73913;EPP=9.52472;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=1588;RO=40;RPL=0;RPP=9.52472;RPPR=89.8692;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:17,3:17:662:3:120:-5.16671,0,-53.886 0/0:17:17,0:17:684:0:0:0,-5.11751,-61.8908 0/0:6:6,0:6:242:0:0:0,-1.80618,-22.1569 dDocent_Contig_4869 15 . A G 77.6118 . 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G A 224.394 . 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G A 2559.07 . AB=0.664122;ABP=33.6596;AC=3;AF=0.5;AN=6;AO=87;CIGAR=1X;DP=131;DPB=131;DPRA=0;EPP=191.928;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.988506;PAIREDR=0.772727;PAO=0;PQA=0;PQR=0;PRO=0;QA=3313;QR=1712;RO=44;RPL=0;RPP=191.928;RPPR=98.5551;RPR=87;RUN=1;SAF=87;SAP=191.928;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:7,36:7:272:36:1351:-108.922,0,-11.9025 0/1:42:18,24:18:704:24:918:-70.2882,0,-51.0487 0/1:46:19,27:19:736:27:1044:-80.4141,0,-52.7173 dDocent_Contig_4882 8 . G A 43.1561 . AB=0.1875;ABP=16.582;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=61;DPB=61;DPRA=0.711111;EPP=9.52472;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=111;QR=2074;RO=58;RPL=0;RPP=9.52472;RPPR=128.956;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:817:0:0:0,-6.92369,-73.8357 0/1:16:13,3:13:490:3:111:-5.53744,0,-39.6285 0/0:22:22,0:22:767:0:0:0,-6.62266,-69.3388 dDocent_Contig_4884 7 . G T 42.3448 . AB=0.166667;ABP=8.80089;AC=0;AF=0;AN=6;AO=3;CIGAR=1M1X7M;DP=34;DPB=33.7778;DPRA=1.04545;EPP=9.52472;EPPR=65.983;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=41;QR=1052;RO=29;RPL=0;RPP=9.52472;RPPR=65.983;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:11:11,0,0:11:400:0,0:0,0:0,-3.31133,-36.3375,-3.31133,-36.3375,-36.3375 0|0:6:3,2,1:3:108:2,1:76,19:-5.45629,0,-8.33653,-5.01368,-7.5721,-13.5119 0|0:17:15,0,2:15:544:0,2:0,22:0,-4.51545,-49.1514,-3.02752,-47.8032,-47.2012 dDocent_Contig_4885 196 . A G 54.7298 . AB=0.25;ABP=9.52472;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=21;DPB=21;DPRA=0.666667;EPP=9.52472;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=674;RO=18;RPL=3;RPP=9.52472;RPPR=42.0968;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:4:2,2:2:78:2:78:-6.19935,0,-6.19935 0/0:9:9,0:9:328:0:0:0,-2.70927,-29.8661 0/1:8:7,1:7:268:1:39:-1.48832,0,-22.0756 dDocent_Contig_4887 175 . G T 69.317 . AB=0.272727;ABP=7.94546;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=34;DPB=34;DPRA=0.956522;EPP=9.52472;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=1223;RO=31;RPL=3;RPP=9.52472;RPPR=70.3259;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:669:0:0:0,-5.11751,-60.5427 0/0:6:6,0:6:236:0:0:0,-1.80618,-21.6114 0/1:11:8,3:8:318:3:123:-8.15346,0,-25.6737 dDocent_Contig_4888 25 . C T 159.484 . AB=0.157895;ABP=138.213;AC=2;AF=0.333333;AN=6;AO=21;CIGAR=1X;DP=212;DPB=212;DPRA=0.841772;EPP=48.6112;EPPR=409.121;GTI=0;LEN=1;MEANALT=1;MQM=48.381;MQMR=58.7958;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.0994764;PAO=0;PQA=0;PQR=0;PRO=0;QA=650;QR=5923;RO=191;RPL=0;RPP=48.6112;RPPR=400.572;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=190;SRP=409.121;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:79:79,0:79:2380:0:0:0,-23.7814,-214.401 0/1:68:55,13:55:1688:13:380:-13.2483,0,-131.693 0/1:65:57,8:57:1855:8:270:-5.01878,0,-146.785 dDocent_Contig_4889 62 . A G 63.1461 . AB=0.192308;ABP=24.391;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=40;DPB=40;DPRA=9.5;EPP=16.0391;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.882353;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=1133;RO=34;RPL=6;RPP=16.0391;RPPR=76.8404;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:11,1:11:360:1:33:0,-0.313225,-29.419 0/0:2:2,0:2:67:0:0:0,-0.60206,-6.36304 0/1:26:21,5:21:706:5:167:-7.53222,0,-56.0287 dDocent_Contig_4890 104 . C T 867.122 . AB=0.507692;ABP=3.04371;AC=3;AF=0.5;AN=6;AO=33;CIGAR=1X;DP=65;DPB=65;DPRA=0;EPP=74.6689;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.90625;PAO=0;PQA=0;PQR=0;PRO=0;QA=1196;QR=1168;RO=32;RPL=0;RPP=74.6689;RPPR=72.4974;RPR=33;RUN=1;SAF=0;SAP=74.6689;SAR=33;SRF=0;SRP=72.4974;SRR=32;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:15,17:15:543:17:618:-46.3203,0,-39.5732 0/1:21:6,15:6:221:15:541:-42.7036,0,-13.9252 0/1:12:11,1:11:404:1:37:-0.0854694,0,-33.0942 dDocent_Contig_4895 66 . C T 88.8955 . AB=0.212121;ABP=26.7649;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=57;DPB=57;DPRA=2.75;EPP=18.2106;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=216;QR=1722;RO=50;RPL=7;RPP=18.2106;RPPR=111.584;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:26,7:26:885:7:216:-9.81036,0,-70.0217 0/0:9:9,0:9:323:0:0:0,-2.70927,-29.4148 0/0:15:15,0:15:514:0:0:0,-4.51545,-46.5848 dDocent_Contig_4896 58 . G T 51.6508 . AB=0.115385;ABP=36.4176;AC=4;AF=0.666667;AN=6;AO=4;CIGAR=1X;DP=27;DPB=27;DPRA=0;EPP=11.6962;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.608696;PAO=0;PQA=0;PQR=0;PRO=0;QA=147;QR=901;RO=23;RPL=4;RPP=11.6962;RPPR=52.9542;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:11,1:11:428:1:41:-0.482207,0,-35.2598 0/1:14:12,2:12:473:2:67:-2.14526,0,-38.7065 1/1:1:0,1:0:0:1:39:-3.89656,-0.30103,0 dDocent_Contig_4897 151 . C A 292.704 . AB=0.407407;ABP=5.02092;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=45;DPB=45;DPRA=0.75;EPP=26.8965;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=433;QR=1246;RO=33;RPL=0;RPP=26.8965;RPPR=74.6689;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=74.6689;SRR=33;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:8,4:8:297:4:160:-11.1714,0,-23.4634 0/1:15:8,7:8:296:7:273:-20.4177,0,-22.4726 0/0:18:17,0:17:653:0:0:0,-5.11751,-58.8984 dDocent_Contig_4898 35 . G A 176.694 . AB=0.4;ABP=4.74748;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X;DP=20;DPB=20;DPRA=0;EPP=20.3821;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=293;QR=450;RO=12;RPL=0;RPP=20.3821;RPPR=29.068;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:5,2:5:179:2:53:-2.92262,0,-14.3475 0/1:4:2,2:2:73:2:79:-6.29351,0,-5.72698 0/1:9:5,4:5:198:4:161:-12.1656,0,-15.4883 dDocent_Contig_4899 11 . C T 74.7136 . AB=0.178571;ABP=28.1373;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=58;DPB=58;DPRA=1.86667;EPP=13.8677;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=183;QR=2030;RO=53;RPL=0;RPP=13.8677;RPPR=118.098;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:23,5:23:859:5:183:-8.39209,0,-69.1811 0/0:24:24,0:24:944:0:0:0,-7.22472,-85.2613 0/0:6:6,0:6:227:0:0:0,-1.80618,-20.7881 dDocent_Contig_4900 30 . C T 298.499 . AB=0.265306;ABP=26.4533;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=159;DPB=159;DPRA=0.890909;EPP=31.2394;EPPR=320.045;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=502;QR=5597;RO=146;RPL=0;RPP=31.2394;RPPR=320.045;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=146;SRP=320.045;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:36,13:36:1308:13:502:-30.7707,0,-103.231 0/0:64:64,0:64:2469:0:0:0,-19.2659,-222.384 0/0:46:46,0:46:1820:0:0:0,-13.8474,-164.014 dDocent_Contig_4901 88 . T C 149.306 . AB=0.388889;ABP=4.9405;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=77;DPB=77;DPRA=0.610169;EPP=18.2106;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=236;QR=2348;RO=70;RPL=7;RPP=18.2106;RPPR=155.013;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:56:56,0:56:1874:0:0:0,-16.8577,-168.935 0/1:18:11,7:11:371:7:236:-16.1517,0,-28.298 0/0:3:3,0:3:103:0:0:0,-0.90309,-9.61002 dDocent_Contig_4902 7 . G A 31.7008 . AB=0.117647;ABP=46.1843;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=64;DPB=64;DPRA=2.26667;EPP=11.6962;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=2088;RO=60;RPL=0;RPP=11.6962;RPPR=133.299;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:30,4:30:1010:4:155:-4.09042,0,-80.9477 0/0:25:25,0:25:905:0:0:0,-7.52575,-81.7573 0/0:5:5,0:5:173:0:0:0,-1.50515,-15.9033 dDocent_Contig_4903 97 . T G 24951.6 . AB=0.454545;ABP=3.20771;AC=3;AF=0.75;AN=4;AO=947;CIGAR=1X;DP=1044;DPB=1044;DPRA=0;EPP=2059.39;EPPR=211.472;GTI=0;LEN=1;MEANALT=1.5;MQM=59.6811;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=0.985216;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=30702;QR=3103;RO=96;RPL=947;RPP=2059.39;RPPR=211.472;RPR=0;RUN=1;SAF=947;SAP=2059.39;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1033:90,942:90:2901:942:30533:-2484.02,-49.3959,0 ./.:.:.:.:.:.:.:. 0/1:11:6,5:6:202:5:169:-12.2318,0,-15.1993 dDocent_Contig_4904 28 . T C 2784.14 . AB=0.684932;ABP=24.6953;AC=4;AF=0.666667;AN=6;AO=87;CIGAR=1X;DP=111;DPB=111;DPRA=0;EPP=191.928;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3395;QR=949;RO=24;RPL=0;RPP=191.928;RPPR=55.1256;RPR=87;RUN=1;SAF=87;SAP=191.928;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:11,37:11:431:37:1428:-114.326,0,-24.6936 1/1:38:1,37:1:37:37:1446:-126.695,-7.74131,0 0/1:25:12,13:12:481:13:521:-39.7117,0,-36.1149 dDocent_Contig_4905 118 . T C 91.9344 . AB=0.189189;ABP=34.0565;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=40;DPB=40;DPRA=6.16667;EPP=18.2106;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=1160;RO=33;RPL=0;RPP=18.2106;RPPR=74.6689;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=74.6689;SRR=33;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:21,4:21:754:4:137:-5.14164,0,-60.6584 0/1:12:9,3:9:310:3:107:-6.36981,0,-24.6201 0/0:3:3,0:3:96:0:0:0,-0.90309,-8.95701 dDocent_Contig_4906 17 . C A 67.7108 . AB=0.272727;ABP=7.94546;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=26;DPB=26;DPRA=1.46667;EPP=9.52472;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.954545;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=880;RO=22;RPL=0;RPP=9.52472;RPPR=50.7827;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:8,3:8:324:3:118:-7.69118,0,-26.2181 0/0:12:11,0:11:433:0:0:0,-3.31133,-39.1954 0/0:3:3,0:3:123:0:0:0,-0.90309,-11.4648 dDocent_Contig_4907 12 . C T 174.408 . AB=0.380952;ABP=5.59539;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=49;DPB=49;DPRA=1.5;EPP=20.3821;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=274;QR=1601;RO=41;RPL=0;RPP=20.3821;RPPR=92.0407;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:448:0:0:0,-3.61236,-40.6499 0/1:21:13,8:13:514:8:274:-18.6626,0,-40.2831 0/0:16:16,0:16:639:0:0:0,-4.81648,-57.8447 dDocent_Contig_4908 10 . C G 230.71 . AB=0.259259;ABP=16.6021;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=2X;DP=42;DPB=42;DPRA=0;EPP=18.2106;EPPR=59.4686;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=1005;RO=26;RPL=0;RPP=18.2106;RPPR=59.4686;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:18:9,4,5:9:345:4,5:161,186:-12.4956,-1.92208,-29.0378,0,-15.0242,-26.7943 0|0:15:12,0,3:12:463:0,3:0,119:-6.57994,-10.1923,-48.2032,0,-38.405,-37.5019 0|1:9:5,3,1:5:197:3,1:112,31:-7.71046,0,-15.3732,-6.7429,-13.8017,-22.6613 dDocent_Contig_4909 132 . N G 13760.4 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=615;CIGAR=1X;DP=615;DPB=615;DPRA=0;EPP=53.0107;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=54.4049;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.274797;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=15815;QR=0;RO=0;RPL=615;RPP=1338.47;RPPR=0;RPR=0;RUN=1;SAF=367;SAP=53.0107;SAR=248;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:200:0,200:0:0:200:4801:-421.877,-60.206,0 1/1:292:0,292:0:0:292:7746:-674.627,-87.9008,0 1/1:123:0,123:0:0:123:3268:-279.056,-37.0267,0 dDocent_Contig_4910 27 . T C 276.322 . AB=0.454545;ABP=3.40511;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=27;DPB=27;DPRA=2.2;EPP=3.0103;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=0.941176;PAO=0;PQA=0;PQR=0;PRO=0;QA=398;QR=688;RO=17;RPL=10;RPP=24.725;RPPR=39.9253;RPR=0;RUN=1;SAF=5;SAP=3.0103;SAR=5;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:5,4:5:203:4:156:-11.7072,0,-15.9438 0/1:13:7,6:7:283:6:242:-18.2436,0,-21.9296 0/0:5:5,0:5:202:0:0:0,-1.50515,-18.5619 dDocent_Contig_4912 82 . A T 30.1773 . AB=0.25;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=37;DPB=37;DPRA=0.551724;EPP=7.35324;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.971429;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=1194;RO=35;RPL=1;RPP=3.0103;RPPR=3.07234;RPR=1;RUN=1;SAF=1;SAP=3.0103;SAR=1;SRF=18;SRP=3.07234;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:611:0:0:0,-5.41854,-55.3087 0/0:11:11,0:11:375:0:0:0,-3.31133,-34.0788 0/1:8:6,2:6:208:2:70:-4.23916,0,-16.6514 dDocent_Contig_4913 41 . A C 71.4043 . AB=0.3;ABP=6.48466;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=52;DPB=52;DPRA=0;EPP=13.8677;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=1817;RO=47;RPL=0;RPP=13.8677;RPPR=105.07;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:21,1:21:818:1:40:0,-2.62698,-69.9355 0/0:20:19,1:19:722:1:41:0,-1.92603,-61.1958 0/1:10:7,3:7:277:3:122:-8.36219,0,-22.2869 dDocent_Contig_4914 11 . G A 149.67 . AB=0.375;ABP=5.18177;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=29;DPB=29;DPRA=0.615385;EPP=16.0391;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.73913;PAO=0;PQA=0;PQR=0;PRO=0;QA=237;QR=896;RO=23;RPL=0;RPP=16.0391;RPPR=52.9542;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:503:0:0:0,-3.91339,-45.6099 0/1:8:6,2:6:240:2:81:-5.27749,0,-19.5672 0/1:8:4,4:4:153:4:156:-12.0082,0,-11.7332 dDocent_Contig_4916 62 . T A 36.2388 . AB=0.222222;ABP=15.074;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=56;DPB=56;DPRA=0.947368;EPP=11.6962;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=111;QR=1584;RO=52;RPL=4;RPP=11.6962;RPPR=115.927;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:529:0:0:0,-5.71957,-47.8771 0/1:18:14,4:14:439:4:111:-4.84562,0,-34.3937 0/0:19:19,0:19:616:0:0:0,-5.71957,-55.7461 dDocent_Contig_4917 7 . G A 9401.7 . AB=0.341549;ABP=250.742;AC=3;AF=0.5;AN=6;AO=388;CIGAR=1X;DP=1136;DPB=1136;DPRA=0;EPP=836.878;EPPR=1577.33;GTI=0;LEN=1;MEANALT=2.33333;MQM=55.0361;MQMR=57.2138;NS=3;NUMALT=1;ODDS=0;PAIRED=0.801546;PAIREDR=0.765517;PAO=0;PQA=0;PQR=0;PRO=0;QA=14576;QR=23935;RO=725;RPL=0;RPP=845.542;RPPR=1577.33;RPR=388;RUN=1;SAF=387;SAP=836.878;SAR=1;SRF=725;SRP=1577.33;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:342:209,131:209:7131:131:4955:-324.558,0,-534.708 0/1:274:171,98:171:6075:98:3665:-244.396,0,-461.698 0/1:520:345,159:345:10729:159:5956:-374.933,0,-807.757 dDocent_Contig_4918 20 . C G 35.4839 . AB=0.2;ABP=10.8276;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=22;DPB=22;DPRA=1.66667;EPP=7.35324;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=788;RO=20;RPL=0;RPP=7.35324;RPPR=46.4397;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3,0:3:119:0:0:0,-0.90309,-11.095 0/0:9:9,0:9:357:0:0:0,-2.70927,-32.4913 0/1:10:8,2:8:312:2:82:-4.76938,0,-25.4291 dDocent_Contig_4919 36 . A G 48.6088 . AB=0.176471;ABP=18.4661;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X2M2X5M;DP=70;DPB=70;DPRA=0.641509;EPP=9.52472;EPPR=124.613;GTI=0;LEN=1;MEANALT=3;MQM=58;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=107;QR=2180;RO=56;RPL=0;RPP=9.52472;RPPR=124.613;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:15:13,0,0,0,2:13:507:0,0,0,2:0,0,0,18:0,-3.91339,-45.8719,-3.91339,-45.8719,-45.8719,-3.91339,-45.8719,-45.8719,-45.8719,-3.32376,-45.3886,-45.3886,-45.3886,-44.7865 0|1:17:9,3,2,3,0:9:347:3,2,3,0:119,80,107,0:-6.08271,-4.05601,-31.7335,-7.82281,-31.6603,-35.7757,0,-23.9123,-27.6558,-27.7342,-8.79198,-32.6366,-36.3777,-28.6373,-37.3652 0|0:38:34,0,0,0,4:34:1326:0,0,0,4:0,0,0,48:0,-10.235,-119.494,-10.235,-119.494,-119.494,-10.235,-119.494,-119.494,-119.494,-8.04791,-117.43,-117.43,-117.43,-116.226 dDocent_Contig_4920 9 . A G 90.316 . AB=0.333333;ABP=5.9056;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=32;DPB=32;DPRA=1.2;EPP=11.6962;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.857143;PAO=0;PQA=0;PQR=0;PRO=0;QA=150;QR=1004;RO=28;RPL=0;RPP=11.6962;RPPR=63.8115;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:346:0:0:0,-3.0103,-31.4706 0/1:12:8,4:8:285:4:150:-10.2534,0,-22.3794 0/0:10:10,0:10:373:0:0:0,-3.0103,-33.9203 dDocent_Contig_4921 16 . G A 5022.14 . AB=0.0390071;ABP=523.548;AC=0;AF=0;AN=6;AO=11;CIGAR=1X1M3X1M1X2M;DP=282;DPB=282;DPRA=0;EPP=26.8965;EPPR=144.156;GTI=0;LEN=1;MEANALT=7.66667;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=0.876923;PAO=0;PQA=0;PQR=0;PRO=0;QA=431;QR=2423;RO=65;RPL=0;RPP=26.8965;RPPR=144.156;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:59:11,3,3,5,3,30:11:412:3,3,5,3,30:119,111,185,110,1101:-86.6818,-80.1952,-113.038,-80.9137,-104.862,-113.756,-74.8593,-98.8072,-99.5255,-107.1,-81.0019,-104.95,-105.668,-99.6136,-113.844,0,-23.9471,-24.6669,-18.6127,-24.7553,-24.7152 0|0:116:34,2,0,4,0,69:34:1261:2,0,4,0,69:80,0,156,0,2611:-203.831,-207.476,-310.052,-214.066,-310.654,-317.245,-201.242,-297.83,-304.421,-303.217,-214.066,-310.654,-317.245,-304.421,-317.245,0,-96.6018,-103.193,-90.3676,-103.193,-82.4222 0|0:107:20,6,0,2,0,71:20:750:6,0,2,0,71:232,0,75,0,2700:-215.418,-202.383,-262.007,-221.438,-263.813,-282.868,-215.295,-257.67,-276.725,-276.123,-221.438,-263.813,-282.868,-276.725,-282.868,0,-42.3702,-61.426,-55.2828,-61.426,-40.0529 dDocent_Contig_4922 28 . A G 79.5847 . AB=0.25;ABP=11.6962;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X2M2I3M;DP=26;DPB=27.3333;DPRA=0.8;EPP=11.6962;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=859;RO=22;RPL=0;RPP=11.6962;RPPR=50.7827;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:10:10,0:10:389:0:0:0,-3.0103,-35.3656 0|1:9:8,1:8:312:1:40:-1.28641,0,-25.7332 0|1:7:4,3:4:158:3:120:-9.08069,0,-12.4934 dDocent_Contig_4924 71 . T C 59.0812 . AB=0.428571;ABP=3.32051;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=2X;DP=41;DPB=41;DPRA=0.964286;EPP=11.6962;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=128;QR=1245;RO=37;RPL=4;RPP=11.6962;RPPR=83.3548;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:14:14,0:14:469:0:0:0,-4.21442,-42.5313 0|1:7:4,3:4:140:3:99:-7.12997,0,-10.8376 0|0:20:19,1:19:636:1:29:0,-3.12094,-54.6561 dDocent_Contig_4925 8 . G A 919.646 . AB=0.0892857;ABP=85.0609;AC=0;AF=0;AN=6;AO=5;CIGAR=1X3M1X;DP=85;DPB=85;DPRA=0;EPP=13.8677;EPPR=96.3836;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=189;QR=1578;RO=43;RPL=0;RPP=13.8677;RPPR=96.3836;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:29:21,0,0,8:21:783:0,0,8:0,0,320:-20.4378,-26.7594,-90.8382,-26.7594,-90.8382,-90.8382,0,-64.4709,-64.4709,-62.0626 0|0:22:7,4,3,7:7:247:4,3,7:152,118,281:-21.0544,-10.7014,-29.5912,-13.4546,-21.0858,-32.6481,0,-7.62777,-10.3836,-17.989 0|0:34:15,1,0,18:15:548:1,0,18:37,0,713:-54.1891,-55.6789,-100.133,-58.7045,-100.434,-103.46,0,-41.737,-44.7643,-39.3458 dDocent_Contig_4926 1 . N G 93.9607 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=21.1059;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=9.58333;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.0833333;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=424;QR=0;RO=0;RPL=0;RPP=29.068;RPPR=0;RPR=12;RUN=1;SAF=1;SAP=21.1059;SAR=11;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:209:-2.7483,-1.80618,0 1/1:2:0,2:0:0:2:70:-0.949436,-0.60206,0 1/1:4:0,4:0:0:4:145:-5.08268,-1.20412,0 dDocent_Contig_4927 38 . A C 436.417 . AB=0.461538;ABP=3.51141;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X;DP=39;DPB=39;DPRA=0;EPP=42.0968;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=645;QR=721;RO=21;RPL=0;RPP=42.0968;RPPR=48.6112;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:6,8:6:209:8:265:-19.951,0,-14.9288 0/1:12:7,5:7:229:5:191:-13.9455,0,-17.3129 0/1:13:8,5:8:283:5:189:-13.462,0,-21.8946 dDocent_Contig_4928 45 . C T 294.411 . AB=0.311111;ABP=16.956;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=45;DPB=45;DPRA=0;EPP=33.4109;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.928571;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=507;QR=1174;RO=31;RPL=0;RPP=33.4109;RPPR=70.3259;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:13,5:13:504:5:170:-10.2133,0,-40.286 0/1:22:15,7:15:582:7:256:-16.7639,0,-46.097 0/1:5:3,2:3:88:2:81:-6.18058,0,-6.70336 dDocent_Contig_4929 1 . N G 109.115 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.29832;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:117:-10.9093,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_4930 1 . N G 1392.5 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=55;CIGAR=1X;DP=55;DPB=55;DPRA=0;EPP=122.441;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=59.4727;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1533;QR=0;RO=0;RPL=0;RPP=122.441;RPPR=0;RPR=55;RUN=1;SAF=0;SAP=122.441;SAR=55;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:24:0,24:0:0:24:679:-61.3788,-7.22472,0 1/1:16:0,16:0:0:16:406:-36.7875,-4.81648,0 1/1:15:0,15:0:0:15:448:-40.607,-4.51545,0 dDocent_Contig_4931 15 . C G 404.174 . AB=0.15;ABP=24.2907;AC=4;AF=0.666667;AN=6;AO=13;CIGAR=1X;DP=30;DPB=30;DPRA=0;EPP=31.2394;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.846154;PAIREDR=0.823529;PAO=0;PQA=0;PQR=0;PRO=0;QA=528;QR=671;RO=17;RPL=0;RPP=31.2394;RPPR=39.9253;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:10,2:10:402:2:81:-4.07337,0,-32.9281 0/1:8:7,1:7:269:1:40:-1.58744,0,-22.1647 1/1:10:0,10:0:0:10:407:-36.9904,-3.0103,0 dDocent_Contig_4932 98 . N G 4802.85 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=164;CIGAR=1X;DP=169;DPB=169;DPRA=0;EPP=350.499;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=48.2073;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.987805;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=5472;QR=0;RO=0;RPL=164;RPP=359.132;RPPR=0;RPR=0;RUN=1;SAF=163;SAP=350.499;SAR=1;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:47:0,45:0:0:45:1470:-131.078,-13.5464,0 1/1:57:0,56:0:0:56:1844:-162.601,-16.8577,0 1/1:65:0,63:0:0:63:2158:-186.129,-18.9649,0 dDocent_Contig_4933 24 . A G 74.9949 . AB=0.122222;ABP=114.576;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=199;DPB=199;DPRA=1.65138;EPP=26.8965;EPPR=411.247;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=391;QR=7419;RO=188;RPL=0;RPP=26.8965;RPPR=411.247;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=188;SRP=411.247;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:90:79,11:79:3110:11:391:-8.42031,0,-252.905 0/0:65:65,0:65:2588:0:0:0,-19.5669,-233.058 0/0:44:44,0:44:1721:0:0:0,-13.2453,-155.111 dDocent_Contig_4934 16 . G T 51.7313 . 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AB=0.222222;ABP=21.1059;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X1M1X3M2D3M1X3M3I2M4I3M5I2M;DP=43;DPB=46.1818;DPRA=0;EPP=18.2106;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1.66667;MQM=40;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=272;QR=1210;RO=32;RPL=0;RPP=18.2106;RPPR=72.4974;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:10:4,4:4:150:4:155:-10.6389,0,-11.069 0|1:17:13,2:13:487:2:77:-2.07573,0,-39.4359 0|0:16:15,1:15:573:1:40:0,-1.11749,-48.2106 dDocent_Contig_4936 107 . N A 30.3336 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=16;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:69:-3.02864,-0.60206,0 dDocent_Contig_4938 149 . G T 74.5771 . AB=0.111111;ABP=14.8328;AC=3;AF=0.5;AN=6;AO=3;CIGAR=1X;DP=19;DPB=19;DPRA=0.6875;EPP=9.52472;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=616;RO=16;RPL=0;RPP=9.52472;RPPR=37.7539;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:309:0:0:0,-2.40824,-28.1727 0/1:9:8,1:8:307:1:38:-1.088,0,-25.2821 1/1:2:0,2:0:0:2:76:-7.21467,-0.60206,0 dDocent_Contig_4939 18 . A G 289.126 . AB=0.245283;ABP=32.8783;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=71;DPB=71;DPRA=0;EPP=33.4109;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=556;QR=2244;RO=57;RPL=0;RPP=33.4109;RPPR=126.784;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:22,8:22:869:8:314:-19.5928,0,-69.4933 0/0:18:17,1:17:662:1:40:0,-1.42286,-55.917 0/1:23:18,5:18:713:5:202:-11.6384,0,-57.5734 dDocent_Contig_4941 15 . G C 2238.24 . 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AB=0.3125;ABP=7.89611;AC=3;AF=0.5;AN=6;AO=6;CIGAR=1X;DP=40;DPB=40;DPRA=0.369565;EPP=16.0391;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=207;QR=1087;RO=34;RPL=0;RPP=16.0391;RPPR=76.8404;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=76.8404;SRR=34;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:766:0:0:0,-6.92369,-69.2503 0/1:16:11,5:11:321:5:172:-11.0018,0,-24.3571 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_4944 14 . T G 900.14 . 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T A 13296.6 . AB=0.361165;ABP=261.677;AC=2;AF=0.333333;AN=6;AO=600;CIGAR=1X;DP=2082;DPB=2082;DPRA=0;EPP=29.7773;EPPR=2939.16;GTI=0;LEN=1;MEANALT=3;MQM=53.4383;MQMR=56.3591;NS=3;NUMALT=1;ODDS=0;PAIRED=0.145;PAIREDR=0.937073;PAO=0;PQA=0;PQR=0;PRO=0;QA=22274;QR=57496;RO=1462;RPL=0;RPP=1305.89;RPPR=3177.7;RPR=600;RUN=1;SAF=343;SAP=29.7773;SAR=257;SRF=1434;SRP=2939.16;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:836:586,238:586:22921:238:8839:-499.757,0,-1767.75 0/1:709:386,320:386:15163:320:11793:-832.22,0,-1104.61 0/0:537:490,42:490:19412:42:1642:0,-23.0551,-1584.62 dDocent_Contig_4946 7 . G A 323.547 . AB=0.304348;ABP=18.305;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=33.4109;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=532;QR=1067;RO=31;RPL=0;RPP=33.4109;RPPR=70.3259;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:13,5:13:459:5:183:-11.2045,0,-36.0405 0/1:16:8,8:8:289:8:310:-23.4472,0,-21.539 0/1:11:10,1:10:319:1:39:-0.585235,0,-25.7022 dDocent_Contig_4948 8 . C G 268.931 . 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AB=0.184211;ABP=101.755;AC=3;AF=0.5;AN=6;AO=21;CIGAR=2X;DP=114;DPB=114;DPRA=0;EPP=48.6112;EPPR=204.957;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=813;QR=3670;RO=93;RPL=0;RPP=48.6112;RPPR=204.957;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:47:41,6:41:1620:6:238:-7.64595,0,-131.889 0|1:22:14,8:14:551:8:302:-20.9099,0,-43.3107 0|1:45:38,7:38:1499:7:273:-11.3892,0,-121.608 dDocent_Contig_4950 9 . T G 104.239 . AB=0.139241;ABP=92.3155;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=91;DPB=91;DPRA=3.29167;EPP=26.8965;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=398;QR=2975;RO=80;RPL=0;RPP=26.8965;RPPR=176.728;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:41,6:41:1524:6:212:-5.275,0,-123.279 0/1:32:27,5:27:998:5:186:-7.46768,0,-80.488 0/0:12:12,0:12:453:0:0:0,-3.61236,-41.1176 dDocent_Contig_4952 34 . A G 319.773 . AB=0.5;ABP=3.0103;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=29;DPB=29;DPRA=1.57143;EPP=26.8965;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=442;QR=714;RO=18;RPL=0;RPP=26.8965;RPPR=42.0968;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:1,9:1:41:9:361:-29.8436,0,-1.08427 0/0:7:7,0:7:272:0:0:0,-2.10721,-24.8455 0/1:12:10,2:10:401:2:81:-4.07337,0,-32.8372 dDocent_Contig_4954 41 . T C 133.55 . AB=0.166667;ABP=55.1256;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X3M1X;DP=54;DPB=54;DPRA=0;EPP=22.5536;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=358;QR=1733;RO=44;RPL=0;RPP=22.5536;RPPR=98.5551;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:20:17,3:17:663:3:119:-5.07479,0,-53.9805 0|1:5:1,3:1:38:3:118:-9.41533,0,-2.21315 0|1:29:26,3:26:1032:3:121:-2.55033,0,-84.4485 dDocent_Contig_4955 28 . G T 56.5195 . AB=0.272727;ABP=7.94546;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=42;DPB=42;DPRA=0.709677;EPP=9.52472;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=106;QR=1561;RO=39;RPL=0;RPP=9.52472;RPPR=87.6977;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:8,3:8:322:3:106:-6.57277,0,-26.0374 0/0:14:14,0:14:560:0:0:0,-4.21442,-50.742 0/0:17:17,0:17:679:0:0:0,-5.11751,-61.44 dDocent_Contig_4956 20 . A T 126.921 . AB=0.15;ABP=66.8516;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=118;DPB=118;DPRA=0;EPP=24.725;EPPR=237.529;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=400;QR=4215;RO=108;RPL=0;RPP=24.725;RPPR=237.529;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:33,4:33:1293:4:159:-3.55385,0,-105.503 0/1:23:18,5:18:700:5:200:-11.456,0,-56.4043 0/0:58:57,1:57:2222:1:41:0,-13.3652,-196.079 dDocent_Contig_4957 38 . T C 657.342 . AB=0.188679;ABP=47.6279;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=3M1X4M;DP=110;DPB=128.75;DPRA=0;EPP=24.725;EPPR=150.67;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=381;QR=2564;RO=68;RPL=0;RPP=24.725;RPPR=150.67;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:53:34,9,10,0:34:1294:9,10,0:305,381,0:-21.0328,-6.55897,-109.98,0,-81.4433,-103.153,-31.2678,-112.689,-106.163,-137.411 0|0:34:15,17,0,2:15:557:17,0,2:580,0,78:-42.4921,0,-40.4441,-47.0076,-45.5616,-92.5965,-40.5908,-39.1478,-86.1829,-85.5809 0|0:23:19,4,0,0:19:713:4,0,0:139,0,0:-5.92603,0,-57.571,-11.6456,-58.7752,-70.0687,-11.6456,-58.7752,-70.0687,-70.0687 dDocent_Contig_4958 33 . C T 734.806 . AB=0.4;ABP=9.09042;AC=3;AF=0.5;AN=6;AO=28;CIGAR=2X2M1X;DP=70;DPB=70;DPRA=0;EPP=63.8115;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1080;QR=1623;RO=42;RPL=0;RPP=63.8115;RPPR=94.2121;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:35:20,15:20:751:15:578:-41.8237,0,-57.3748 0|1:16:9,7:9:358:7:262:-19.1175,0,-27.7671 0|1:19:13,6:13:514:6:240:-16.2561,0,-40.8862 dDocent_Contig_4959 38 . T C 133.572 . AB=0.123711;ABP=122.307;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=160;DPB=160;DPRA=0;EPP=39.9253;EPPR=313.531;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.979021;PAO=0;PQA=0;PQR=0;PRO=0;QA=666;QR=5494;RO=143;RPL=0;RPP=39.9253;RPPR=313.531;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=143;SRP=313.531;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:19,6:19:739:6:238:-14.2686,0,-59.3094 0/0:63:58,5:58:2206:5:189:0,-1.59079,-181.355 0/1:72:66,6:66:2549:6:239:-0.210639,0,-207.89 dDocent_Contig_4960 90 . T A 31.7857 . AB=0.176471;ABP=18.4661;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=2X;DP=28;DPB=28;DPRA=3.09091;EPP=9.52472;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.96;PAO=0;PQA=0;PQR=0;PRO=0;QA=102;QR=827;RO=25;RPL=3;RPP=9.52472;RPPR=57.2971;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:8:8,0:8:262:0:0:0,-2.40824,-23.9011 0|0:3:3,0:3:98:0:0:0,-0.90309,-9.14405 0|1:17:14,3:14:467:3:102:-4.39939,0,-37.2329 dDocent_Contig_4961 130 . G A 87.2339 . 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G T 50.0523 . AB=0.333333;ABP=5.9056;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=26;DPB=26;DPRA=1.71429;EPP=11.6962;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=29.25;MQMR=50.4545;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.772727;PAO=0;PQA=0;PQR=0;PRO=0;QA=136;QR=764;RO=22;RPL=0;RPP=11.6962;RPPR=50.7827;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3,0:3:105:0:0:0,-0.90309,-7.36989 0/1:12:8,4:8:277:4:136:-6.22635,0,-20.0677 0/0:11:11,0:11:382:0:0:0,-3.31133,-30.0783 dDocent_Contig_4969 9 . G A 88.5595 . AB=0.0689655;ABP=49.8093;AC=3;AF=0.5;AN=6;AO=2;CIGAR=2X2M;DP=57;DPB=59.5;DPRA=0;EPP=7.35324;EPPR=96.3836;GTI=0;LEN=1;MEANALT=3;MQM=11;MQMR=45.3953;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.627907;PAO=0;PQA=0;PQR=0;PRO=0;QA=22;QR=1625;RO=43;RPL=0;RPP=7.35324;RPPR=96.3836;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:29:20,6,2:20:769:6,2:228,22:-9.04531,0,-54.4431,-14.2508,-55.4045,-69.7706 0|1:14:11,2,0:11:416:2,0:78,0:-2.00827,0,-17.5807,-5.3196,-18.1827,-23.3587 0|1:14:12,2,0:12:440:2,0:64,0:-1.25508,0,-33.4803,-4.86744,-34.0824,-38.6537 dDocent_Contig_4971 40 . A G 2880.05 . AB=0.123036;ABP=3223.26;AC=3;AF=0.5;AN=6;AO=321;CIGAR=1X;DP=2609;DPB=2609;DPRA=0;EPP=333.406;EPPR=4758.55;GTI=0;LEN=1;MEANALT=1.66667;MQM=58.2617;MQMR=59.8788;NS=3;NUMALT=1;ODDS=1.11022e-16;PAIRED=0.778816;PAIREDR=0.974617;PAO=0;PQA=0;PQR=0;PRO=0;QA=12067;QR=87952;RO=2285;RPL=2;RPP=682.789;RPPR=4947.47;RPR=319;RUN=1;SAF=271;SAP=333.406;SAR=50;SRF=2261;SRP=4758.55;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:929:785,143:785:30237:143:5404:-205.436,0,-2439.44 0/1:630:564,64:564:21796:64:2414:-26.7553,0,-1770.36 0/1:1050:936,114:936:35919:114:4249:-59.5302,0,-2912.19 dDocent_Contig_4972 7 . G A 534.777 . AB=0.22449;ABP=99.9289;AC=1;AF=0.166667;AN=6;AO=52;CIGAR=1X;DP=388;DPB=388;DPRA=0;EPP=31.2394;EPPR=495.581;GTI=0;LEN=1;MEANALT=2.66667;MQM=45.2885;MQMR=49.4013;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.247649;PAO=0;PQA=0;PQR=0;PRO=0;QA=1943;QR=11110;RO=319;RPL=0;RPP=115.927;RPPR=695.71;RPR=52;RUN=1;SAF=39;SAP=31.2394;SAR=13;SRF=294;SRP=495.581;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:160:141,13:141:5072:13:483:0,-12.6253,-394.758 0/1:147:106,33:106:3871:33:1228:-54.6995,0,-262.336 0/0:81:72,6:72:2167:6:232:0,-7.18407,-172.861 dDocent_Contig_4973 7 . G A 333.222 . AB=0.5;ABP=3.0103;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=26;DPB=26;DPRA=0;EPP=31.2394;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.846154;PAO=0;PQA=0;PQR=0;PRO=0;QA=484;QR=466;RO=13;RPL=0;RPP=31.2394;RPPR=31.2394;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:5,2:5:189:2:76:-5.10746,0,-15.2685 0/1:8:1,7:1:37:7:255:-20.8925,0,-1.28959 0/1:11:7,4:7:240:4:153:-10.8303,0,-18.6211 dDocent_Contig_4974 7 . G A 105.584 . AB=0.352941;ABP=6.20364;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=28;DPB=28;DPRA=0.772727;EPP=16.0391;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1.5;MQM=33.6667;MQMR=49.8571;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=0.761905;PAO=0;PQA=0;PQR=0;PRO=0;QA=221;QR=664;RO=21;RPL=0;RPP=16.0391;RPPR=48.6112;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:322:0:0:0,-3.31133,-26.9687 0/1:7:3,4:3:109:4:149:-10.291,0,-1.5265 0/1:10:7,2:7:233:2:72:-2.48044,0,-18.4429 dDocent_Contig_4976 18 . G T 308.955 . AB=0.111111;ABP=26.6552;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=40;DPB=40;DPRA=0.928571;EPP=24.725;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=38.9667;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.466667;PAO=0;PQA=0;PQR=0;PRO=0;QA=405;QR=1193;RO=30;RPL=0;RPP=24.725;RPPR=68.1545;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:16,2:16:638:2:80:-2.17304,0,-32.6859 0/0:14:14,0:14:555:0:0:0,-4.21442,-41.607 1/1:8:0,8:0:0:8:325:-29.6196,-2.40824,0 dDocent_Contig_4977 16 . T A 219.004 . AB=0.0952381;ABP=32.8939;AC=0;AF=0;AN=6;AO=2;CIGAR=1X1M1X7M1D2M2X2M2I2M;DP=47;DPB=47.3158;DPRA=0;EPP=7.35324;EPPR=65.983;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.965517;PAO=0;PQA=0;PQR=0;PRO=0;QA=74;QR=1122;RO=29;RPL=0;RPP=7.35324;RPPR=65.983;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:10:9,0,0,1:9:348:0,0,1:0,0,41:-1.08427,-3.79354,-32.3561,-3.79354,-32.3561,-32.3561,0,-28.9697,-28.9697,-28.6687 0|0:16:11,0,0,3:11:418:0,0,3:0,0,121:-6.71276,-10.0241,-44.3122,-10.0241,-44.3122,-44.3122,0,-34.3319,-34.3319,-33.4288 0|0:21:9,3,2,6:9:356:3,2,6:104,74,244:-17.4412,-11.7089,-40.1048,-14.0989,-34.957,-42.8003,0,-20.8757,-23.2683,-27.5145 dDocent_Contig_4978 3 . A C 54.1864 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X2I1M1X;DP=2;DPB=3.33333;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=57;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:57:-5.41432,-0.60206,0 .:.:.:.:.:.:.:. dDocent_Contig_4979 12 . A T 269.517 . AB=0.233333;ABP=40.0701;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=77;DPB=77;DPRA=1.76471;EPP=33.4109;EPPR=131.265;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.4603;NS=3;NUMALT=1;ODDS=0;PAIRED=0.714286;PAIREDR=0.920635;PAO=0;PQA=0;PQR=0;PRO=0;QA=518;QR=2479;RO=63;RPL=0;RPP=33.4109;RPPR=139.813;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=62;SRP=131.265;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:31,10:31:1242:10:370:-21.308,0,-99.7106 0/0:17:17,0:17:665:0:0:0,-5.11751,-59.8454 0/1:19:15,4:15:572:4:148:-7.9624,0,-46.0928 dDocent_Contig_4980 9 . G A 1293.29 . AB=0.0609756;ABP=552.128;AC=0;AF=0;AN=6;AO=20;CIGAR=2X8M1X;DP=328;DPB=327.909;DPRA=0;EPP=46.4397;EPPR=99.2232;GTI=0;LEN=1;MEANALT=14.6667;MQM=14.7;MQMR=53.8077;NS=3;NUMALT=8;ODDS=0;PAIRED=0.4;PAIREDR=0.846154;PAO=0;PQA=0;PQR=0;PRO=0;QA=294;QR=2000;RO=52;RPL=0;RPP=46.4397;RPPR=115.927;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=50;SRP=99.2232;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:109:13,8,0,6,32,8,12,3,10:13:493:8,0,6,32,8,12,3,10:178,0,30,771,312,158,104,358:-48.2348,-40.6785,-77.524,-52.1482,-79.9323,-91.4003,-52.4874,-80.2724,-91.7394,-89.9332,0,-27.7953,-39.2624,-39.6065,-29.6295,-44.7731,-72.5589,-84.0262,-84.3666,-31.8913,-81.618,-44.422,-72.2084,-83.6749,-84.0164,-31.5439,-76.3029,-80.0626,-43.6909,-71.476,-82.9443,-83.2834,-30.8048,-75.57,-75.2188,-82.0412,-22.9402,-50.7278,-62.1969,-62.5362,-10.0522,-54.8222,-54.4711,-53.74,-59.1866 0|0:120:29,16,14,5,32,3,4,0,0:29:1122:16,14,5,32,3,4,0,0:254,541,55,642,117,44,0,0:-32.964,-27.8315,-103.205,-0.301115,-66.6409,-76.2877,-39.404,-105.733,-78.2122,-118.086,0,-66.3491,-38.8152,-77.9126,-70.566,-39.6314,-105.96,-78.4398,-117.53,-78.1385,-118.916,-39.8244,-106.153,-78.6326,-117.723,-78.3322,-117.95,-118.808,-41.6938,-108.021,-80.5021,-119.592,-80.199,-119.819,-120.012,-121.881,-41.6938,-108.021,-80.5021,-119.592,-80.199,-119.819,-120.012,-121.881,-121.881 0|0:99:10,4,2,8,25,21,4,15,0:10:385:4,2,8,25,21,4,15,0:80,73,40,562,818,92,593,0:-51.7797,-49.8446,-80.2699,-49.1607,-75.8453,-80.1881,-55.2446,-81.9293,-81.2446,-84.4648,-16.8372,-43.5286,-42.8429,-48.9337,-40.9465,-40.6332,-67.3207,-66.6348,-72.7261,-34.3331,-65.9417,-48.793,-75.4778,-74.7938,-80.8776,-42.4766,-66.2688,-79.2183,-6.32145,-33.0122,-32.3283,-38.4125,0,-23.7995,-31.9604,-33.4427,-54.79,-81.474,-80.7902,-86.8731,-48.4723,-72.2633,-80.4224,-37.9581,-86.4187 dDocent_Contig_4981 47 . C G 36.0662 . AB=0.16;ABP=28.1125;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=2X2M1X;DP=43;DPB=43;DPRA=0.694444;EPP=11.6962;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=142;QR=1264;RO=38;RPL=0;RPP=11.6962;RPPR=85.5263;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:11:9,2:9:289:2:72:-3.52539,0,-23.0123 0|1:14:11,2:11:376:2:70:-2.38414,0,-29.9075 0|0:18:18,0:18:599:0:0:0,-5.41854,-54.222 dDocent_Contig_4985 60 . G A 69.1485 . AB=0.235294;ABP=13.3567;AC=1;AF=0.25;AN=4;AO=4;CIGAR=1X;DP=39;DPB=39;DPRA=0.772727;EPP=11.6962;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.914286;PAO=0;PQA=0;PQR=0;PRO=0;QA=142;QR=1146;RO=35;RPL=2;RPP=3.0103;RPPR=3.07234;RPR=2;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=17;SRP=3.07234;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:13,4:13:435:4:142:-8.01176,0,-34.3526 0/0:22:22,0:22:711:0:0:0,-6.62266,-64.2899 ./.:.:.:.:.:.:.:. dDocent_Contig_4986 10 . G A 1891.49 . AB=0.06;ABP=87.0897;AC=0;AF=0;AN=6;AO=3;CIGAR=1X2M1X3M;DP=237;DPB=244.857;DPRA=0;EPP=9.52472;EPPR=274.444;GTI=0;LEN=1;MEANALT=8;MQM=60;MQMR=59.752;NS=3;NUMALT=6;ODDS=0;PAIRED=0;PAIREDR=0.904;PAO=0;PQA=0;PQR=0;PRO=0;QA=106;QR=4637;RO=125;RPL=0;RPP=9.52472;RPPR=274.444;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=125;SRP=274.444;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:104:67,0,0,1,4,0,29:67:2513:0,0,1,4,0,29:0,0,38,152,0,1129:-72.6928,-92.8618,-297.998,-92.8618,-297.998,-297.998,-89.7449,-294.882,-294.882,-294.581,-80.3942,-285.532,-285.532,-282.416,-284.328,-92.8618,-297.998,-297.998,-294.882,-285.532,-297.998,0,-205.215,-205.215,-202.098,-192.748,-205.215,-196.485 0|0:83:40,0,0,8,2,6,25:40:1461:0,0,8,2,6,25:0,0,285,78,164,999:-70.2795,-82.3207,-201.67,-82.3207,-201.67,-201.67,-59.0985,-178.445,-178.445,-176.037,-75.9081,-195.258,-195.258,-172.033,-194.656,-69.3905,-188.731,-188.731,-165.507,-182.319,-186.925,0,-119.372,-119.372,-96.1462,-112.959,-106.435,-111.846 0|0:50:18,3,3,2,3,1,17:18:663:3,3,2,3,1,17:106,115,63,117,35,672:-49.8931,-46.6829,-99.9829,-45.8732,-91.4473,-99.1744,-50.2514,-95.8241,-95.0155,-103.852,-45.6933,-91.2676,-90.459,-94.8358,-98.9947,-52.465,-98.0389,-97.2303,-101.607,-97.0506,-106.368,0,-45.5793,-44.7697,-49.1483,-44.5898,-51.3624,-49.0921 dDocent_Contig_4987 15 . T C 57.0267 . AB=0.214286;ABP=12.937;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=22;DPB=22;DPRA=0.875;EPP=9.52472;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=765;RO=19;RPL=0;RPP=9.52472;RPPR=44.2683;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:3:1,2:1:41:2:79:-6.59415,0,-3.19148 0/1:11:10,1:10:401:1:40:-0.684349,0,-33.1383 0/0:8:8,0:8:323:0:0:0,-2.40824,-29.4384 dDocent_Contig_4988 156 . T C 548.221 . AB=0.358209;ABP=14.7103;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=67;DPB=67;DPRA=0;EPP=55.1256;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=863;QR=1550;RO=43;RPL=0;RPP=55.1256;RPPR=96.3836;RPR=24;RUN=1;SAF=0;SAP=55.1256;SAR=24;SRF=0;SRP=96.3836;SRR=43;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:7,4:7:258:4:143:-9.91003,0,-20.2638 0/1:37:31,6:31:1109:6:216:-8.65208,0,-88.9797 0/1:19:5,14:5:183:14:504:-39.9767,0,-11.1072 dDocent_Contig_4990 59 . T C 76.1937 . AB=0.307692;ABP=7.18621;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=26;DPB=26;DPRA=2;EPP=11.6962;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=138;QR=887;RO=22;RPL=4;RPP=11.6962;RPPR=50.7827;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:403:0:0:0,-3.0103,-36.6302 0/1:13:9,4:9:363:4:138:-8.84049,0,-29.1209 0/0:3:3,0:3:121:0:0:0,-0.90309,-11.2802 dDocent_Contig_4991 38 . C T 94.9623 . AB=0.333333;ABP=5.9056;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=54;DPB=54;DPRA=1.1875;EPP=16.0391;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.9375;PAO=0;PQA=0;PQR=0;PRO=0;QA=237;QR=1877;RO=48;RPL=0;RPP=16.0391;RPPR=107.241;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:635:0:0:0,-4.81648,-57.4867 0/1:12:8,4:8:312:4:155:-10.7129,0,-24.8302 0/0:26:24,2:24:930:2:82:0,-0.0471021,-76.2206 dDocent_Contig_4993 169 . C G 702.288 . AB=0.462963;ABP=3.6537;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X2M1X;DP=54;DPB=54;DPRA=0;EPP=57.2971;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=988;QR=1048;RO=28;RPL=25;RPP=57.2971;RPPR=63.8115;RPR=0;RUN=1;SAF=0;SAP=57.2971;SAR=25;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:26:17,8:17:638:8:313:-20.8934,0,-50.1308 0|1:13:3,10:3:110:10:392:-31.7242,0,-6.34671 0|1:15:8,7:8:300:7:283:-21.3279,0,-22.8409 dDocent_Contig_4994 53 . A G 731.355 . AB=0.472727;ABP=3.36563;AC=3;AF=0.5;AN=6;AO=26;CIGAR=2M1X1M1X;DP=55;DPB=54.4;DPRA=0;EPP=51.1168;EPPR=55.1256;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=0;PAIREDR=0.958333;PAO=0;PQA=0;PQR=0;PRO=0;QA=1017;QR=856;RO=24;RPL=26;RPP=59.4686;RPPR=55.1256;RPR=0;RUN=1;SAF=25;SAP=51.1168;SAR=1;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:27:13,3,10:13:460:3,10:122,398:-28.9105,-22.7526,-59.3033,0,-27.4082,-34.4738 0|1:23:10,0,12:10:362:0,12:0,474:-35.9983,-39.0086,-68.5406,0,-29.5208,-25.9084 0|1:5:1,0,4:1:34:0,4:0,145:-11.8994,-12.2004,-14.954,0,-3.09788,-1.89376 dDocent_Contig_4995 7 . G T 75.8366 . AB=0.4;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X3M1X;DP=21;DPB=21;DPRA=0;EPP=7.35324;EPPR=33.4109;GTI=0;LEN=1;MEANALT=2;MQM=26;MQMR=57.1429;NS=3;NUMALT=2;ODDS=1.73472e-18;PAIRED=0;PAIREDR=0.857143;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=502;RO=14;RPL=0;RPP=7.35324;RPPR=33.4109;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:9:7,0,2:7:260:0,2:0,74:-4.14317,-6.25038,-27.5351,0,-21.6477,-21.0457 0|1:5:2,2,1:2:76:2,1:78,38:-3.39762,0,-5.27557,-1.41799,-3.32948,-7.01795 0|0:7:5,0,2:5:166:0,2:0,72:-3.75167,-5.25682,-18.7011,0,-13.7593,-13.1573 dDocent_Contig_4996 67 . G T 137.309 . AB=0.263158;ABP=12.2676;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X1M1X;DP=34;DPB=34;DPRA=0;EPP=16.0391;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=230;QR=939;RO=25;RPL=6;RPP=16.0391;RPPR=57.2971;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:3:0,2,1:0:0:2,1:77,40:-10.0071,-3.69465,-3.09259,-6.70708,0,-6.40605 0|1:16:11,3,2:11:413:3,2:114,76:-6.03809,0,-32.9257,-3.11693,-27.5956,-36.3439 0|0:15:14,1,0:14:526:1,0:39,0:0,-0.618885,-43.7845,-4.21442,-44.0855,-47.2923 dDocent_Contig_4997 56 . C A 42.6276 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=39;DPB=39;DPRA=0.4375;EPP=7.35324;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=1477;RO=37;RPL=2;RPP=7.35324;RPPR=83.3548;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:562:0:0:0,-4.21442,-50.9214 0/1:7:5,2:5:192:2:80:-5.48458,0,-15.5402 0/0:18:18,0:18:723:0:0:0,-5.41854,-65.3915 dDocent_Contig_4998 38 . G A 134.809 . AB=0.2;ABP=30.3709;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=49;DPB=49;DPRA=1.25;EPP=18.2106;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=284;QR=1633;RO=42;RPL=0;RPP=18.2106;RPPR=94.2121;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:20,5:20:761:5:204:-11.2183,0,-61.2778 0/0:14:14,0:14:550:0:0:0,-4.21442,-49.8402 0/1:10:8,2:8:322:2:80:-4.58128,0,-26.3369 dDocent_Contig_4999 189 . G T 253.085 . AB=0.428571;ABP=3.94093;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=32;DPB=32;DPRA=3.81818;EPP=22.5536;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=361;QR=920;RO=23;RPL=9;RPP=22.5536;RPPR=52.9542;RPR=0;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:279:0:0:0,-2.10721,-25.4808 0/0:4:4,0:4:155:0:0:0,-1.20412,-14.3238 0/1:21:12,9:12:486:9:361:-26.5299,0,-37.7691 dDocent_Contig_5000 7 . G A 194.456 . AB=0.28125;ABP=16.3106;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=62;DPB=62;DPRA=2.13333;EPP=22.5536;EPPR=115.927;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=331;QR=1812;RO=52;RPL=0;RPP=22.5536;RPPR=115.927;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:531:0:0:0,-4.21442,-48.1335 0/0:16:16,0:16:590:0:0:0,-4.81648,-53.4321 0/1:32:22,9:22:691:9:331:-20.6674,0,-53.0223 dDocent_Contig_5001 20 . T A 69.9604 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1M1D1M1X;DP=38;DPB=37;DPRA=0.375;EPP=9.52472;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=46;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=109;QR=1330;RO=34;RPL=0;RPP=9.52472;RPPR=76.8404;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:16:15,0:15:586:0:0:0,-4.51545,-52.9063 0|0:16:16,0:16:623:0:0:0,-4.81648,-56.407 0|1:6:3,3:3:121:3:109:-8.21789,0,-9.47402 dDocent_Contig_5002 13 . G C 149.436 . AB=0.151515;ABP=72.629;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=26.8965;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.913;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.913043;PAO=0;PQA=0;PQR=0;PRO=0;QA=443;QR=2697;RO=69;RPL=0;RPP=26.8965;RPPR=152.842;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:33,7:33:1302:7:281:-13.6208,0,-103.361 0/1:26:23,3:23:874:3:123:-3.63801,0,-71.1319 0/0:14:13,1:13:521:1:39:0,-0.317855,-43.206 dDocent_Contig_5003 17 . A T 37.547 . AB=0.222222;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=37;DPB=37;DPRA=0.642857;EPP=7.35324;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1345;RO=35;RPL=0;RPP=7.35324;RPPR=79.0118;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:381:0:0:0,-3.0103,-34.6358 0/1:9:7,2:7:271:2:81:-4.97646,0,-22.0427 0/0:18:18,0:18:693:0:0:0,-5.41854,-62.6897 dDocent_Contig_5004 7 . G A 289.989 . AB=0.315789;ABP=14.2105;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1X;DP=120;DPB=120;DPRA=1;EPP=35.5824;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=568;QR=3588;RO=104;RPL=0;RPP=35.5824;RPPR=228.843;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:39,3:39:1434:3:109:0,-2.47597,-119.18 0/1:38:26,12:26:910:12:459:-30.2207,0,-70.7552 0/0:40:39,0:39:1244:0:0:0,-11.7402,-112.105 dDocent_Contig_5005 10 . G A 1444.11 . AB=0.429688;ABP=8.50684;AC=3;AF=0.5;AN=6;AO=55;CIGAR=1X4M;DP=128;DPB=128;DPRA=0;EPP=122.441;EPPR=128.956;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=1.38778e-17;PAIRED=0.927273;PAIREDR=0.948276;PAO=0;PQA=0;PQR=0;PRO=0;QA=2026;QR=2188;RO=58;RPL=0;RPP=122.441;RPPR=128.956;RPR=55;RUN=1;SAF=55;SAP=122.441;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:34:15,0,1,15,3:15:537:0,1,15,3:0,33,532,116:-38.7989,-43.3144,-87.0966,-40.6478,-84.4292,-84.1282,0,-43.7709,-41.1045,-39.2555,-33.7817,-77.5664,-74.8991,-34.2388,-76.6633 0|1:50:22,5,3,18,0:22:841:5,3,18,0:199,117,683,0:-49.3718,-39.6052,-107.105,-46.376,-98.9922,-114.477,0,-52.6109,-59.3812,-63.5808,-55.9945,-108.611,-115.38,-68.9994,-124.998 0|1:44:21,1,0,22,0:21:810:1,0,22,0:39,0,811,0:-59.9573,-63.0721,-129.296,-66.2789,-129.597,-132.803,0,-63.3063,-66.5124,-59.8897,-66.2789,-129.597,-132.803,-66.5124,-132.803 dDocent_Contig_5006 55 . C T 47.0861 . AB=0.2;ABP=14.7363;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=57;DPB=57;DPRA=0.714286;EPP=9.52472;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=112;QR=1955;RO=54;RPL=3;RPP=9.52472;RPPR=120.27;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3512 0/1:15:12,3:12:446:3:112:-5.93045,0,-35.9696 0/0:18:18,0:18:653:0:0:0,-5.41854,-59.0986 dDocent_Contig_5007 11 . C G 87.374 . AB=0.208333;ABP=20.744;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=60;DPB=60;DPRA=1.33333;EPP=13.8677;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.963636;PAO=0;PQA=0;PQR=0;PRO=0;QA=187;QR=2114;RO=55;RPL=0;RPP=13.8677;RPPR=122.441;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:29,0:29:1137:0:0:0,-8.72987,-102.616 0/1:24:19,5:19:698:5:187:-9.95921,0,-55.91 0/0:7:7,0:7:279:0:0:0,-2.10721,-25.4802 dDocent_Contig_5008 16 . C A 155.436 . AB=0.178571;ABP=28.1373;AC=1;AF=0.25;AN=4;AO=5;CIGAR=1M1X1M;DP=42;DPB=43.3333;DPRA=0;EPP=13.8677;EPPR=70.3259;GTI=0;LEN=1;MEANALT=2;MQM=40;MQMR=40;NS=2;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=1218;RO=31;RPL=0;RPP=13.8677;RPPR=70.3259;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:28:21,0,5,2:21:820:0,5,2:0,195,80:-8.56663,-14.8883,-77.3953,0,-62.5031,-60.998,-8.83056,-71.3388,-56.4465,-70.7367 0|0:14:10,4,0,0:10:398:4,0,0:160,0,0:-9.47185,0,-29.3397,-12.4821,-30.5438,-42.6564,-12.4821,-30.5438,-42.6564,-42.6564 .:.:.:.:.:.:.:. dDocent_Contig_5009 14 . G A 731.943 . AB=0.1;ABP=100.292;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=5M1X11M;DP=134;DPB=124.588;DPRA=0;EPP=18.2106;EPPR=183.243;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=281;QR=3195;RO=83;RPL=0;RPP=18.2106;RPPR=183.243;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:64:49,0,10,5,0:49:1888:0,10,5,0:0,373,175,0:-15.8025,-30.553,-185.592,0,-155.056,-152.046,-16.3233,-171.357,-140.822,-169.852,-30.553,-185.592,-155.056,-171.357,-185.592 0|0:48:23,0,20,0,1:23:882:0,20,0,1:0,639,0,41:-44.5966,-51.5203,-123.945,0,-72.501,-66.4804,-51.5203,-123.945,-72.501,-123.945,-48.1319,-120.56,-69.115,-120.56,-120.259 0|1:22:11,2,2,0,6:11:425:2,2,0,6:66,53,0,240:-16.5119,-14.4942,-48.8122,-15.6773,-45.2604,-49.9873,-19.8232,-49.4142,-50.5894,-54.7448,0,-29.6336,-30.8116,-34.964,-33.1578 dDocent_Contig_5011 197 . T C 448.77 . AB=0.298507;ABP=26.6372;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X;DP=67;DPB=67;DPRA=0;EPP=46.4397;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=752;QR=1786;RO=47;RPL=20;RPP=46.4397;RPPR=105.07;RPR=0;RUN=1;SAF=0;SAP=46.4397;SAR=20;SRF=0;SRP=105.07;SRR=47;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:31,4:31:1178:4:141:-2.49983,0,-95.7817 0/1:28:14,14:14:529:14:533:-39.8833,0,-39.5232 0/1:4:2,2:2:79:2:78:-6.19935,0,-6.29312 dDocent_Contig_5012 49 . T C 1166.61 . AB=0.300654;ABP=55.8211;AC=3;AF=0.5;AN=6;AO=46;CIGAR=1X;DP=153;DPB=153;DPRA=0;EPP=86.2815;EPPR=218.311;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.214953;PAO=0;PQA=0;PQR=0;PRO=0;QA=1838;QR=4212;RO=107;RPL=3;RPP=78.5398;RPPR=218.311;RPR=43;RUN=1;SAF=45;SAP=94.401;SAR=1;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:68:44,24:44:1710:24:951:-65.4236,0,-133.658 0/1:42:31,11:31:1211:11:439:-27.223,0,-96.6165 0/1:43:32,11:32:1291:11:448:-27.7315,0,-103.51 dDocent_Contig_5013 7 . G A 374.306 . AB=0.365854;ABP=9.41879;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=69;DPB=69;DPRA=0.732143;EPP=35.5824;EPPR=118.098;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=569;QR=1843;RO=53;RPL=0;RPP=35.5824;RPPR=118.098;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:7,7:7:253:7:272:-20.6328,0,-18.9033 0/1:27:18,8:18:680:8:297:-19.1166,0,-53.5816 0/0:28:28,0:28:910:0:0:0,-8.42884,-82.1761 dDocent_Contig_5014 120 . A T 70.1996 . AB=0.227273;ABP=17.2236;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=26;DPB=26;DPRA=2.75;EPP=13.8677;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=702;RO=21;RPL=0;RPP=13.8677;RPPR=48.6112;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:9,1:9:291:1:35:-0.488329,0,-23.4945 0/1:12:8,4:8:272:4:128:-8.224,0,-21.1993 0/0:4:4,0:4:139:0:0:0,-1.20412,-12.8527 dDocent_Contig_5015 11 . C A 68.3931 . AB=0.272727;ABP=7.94546;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=56;DPB=56;DPRA=0.488889;EPP=9.52472;EPPR=101.382;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=56.1509;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.924528;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=2095;RO=53;RPL=0;RPP=9.52472;RPPR=118.098;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=51;SRP=101.382;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1066:0:0:0,-8.12781,-85.401 0/0:18:18,0:18:709:0:0:0,-5.41854,-64.1387 0/1:11:8,3:8:320:3:122:-8.06116,0,-25.8565 dDocent_Contig_5016 7 . G A 422.049 . AB=0.181818;ABP=119.085;AC=1;AF=0.166667;AN=6;AO=30;CIGAR=1X;DP=300;DPB=300;DPRA=0;EPP=68.1545;EPPR=582.793;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=0;PAIREDR=0.0599251;PAO=0;PQA=0;PQR=0;PRO=0;QA=1135;QR=9383;RO=267;RPL=0;RPP=68.1545;RPPR=582.793;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=267;SRP=582.793;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:132:107,24:107:3809:24:916:-43.1257,0,-303.311 0/0:85:80,5:80:2920:5:187:0,-8.39555,-245.797 0/0:83:80,1:80:2654:1:32:0,-21.4341,-235.998 dDocent_Contig_5017 30 . T C 578.988 . AB=0.355556;ABP=11.1654;AC=4;AF=0.666667;AN=6;AO=20;CIGAR=1X;DP=49;DPB=49;DPRA=0;EPP=46.4397;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=807;QR=1162;RO=29;RPL=0;RPP=46.4397;RPPR=65.983;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:15,2:15:597:2:80:-2.47428,0,-48.9528 0/1:28:14,14:14:565:14:565:-42.7642,0,-42.7632 1/1:4:0,4:0:0:4:162:-14.9667,-1.20412,0 dDocent_Contig_5019 7 . G A 377.556 . AB=0.25;ABP=42.0968;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=98;DPB=98;DPRA=1.38462;EPP=42.0968;EPPR=174.557;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=677;QR=2733;RO=79;RPL=0;RPP=42.0968;RPPR=174.557;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:929:0:0:0,-7.82678,-83.9117 0/1:43:33,9:33:1161:9:340:-18.1212,0,-91.9557 0/1:29:20,9:20:643:9:337:-21.9532,0,-49.4309 dDocent_Contig_5020 51 . C G 580.689 . AB=0.488372;ABP=3.0608;AC=2;AF=0.333333;AN=6;AO=22;CIGAR=1X;DP=74;DPB=74;DPRA=0;EPP=42.4916;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=59.5909;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.954545;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=845;QR=2071;RO=52;RPL=21;RPP=42.4916;RPPR=115.927;RPR=1;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:11,5:11:441:5:192:-12.8299,0,-35.2285 0/0:31:30,1:30:1184:1:38:0,-5.55316,-103.063 0/1:27:11,16:11:446:16:615:-47.5578,0,-32.3684 dDocent_Contig_5022 123 . G A 52.9457 . AB=0.3;ABP=6.48466;AC=1;AF=0.25;AN=4;AO=3;CIGAR=1X;DP=25;DPB=25;DPRA=0.666667;EPP=9.52472;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=759;RO=22;RPL=0;RPP=9.52472;RPPR=50.7827;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:515:0:0:0,-4.51545,-46.6766 ./.:.:.:.:.:.:.:. 0/1:10:7,3:7:244:3:104:-6.69251,0,-19.2898 dDocent_Contig_5023 13 . G T 720.586 . AB=0.293578;ABP=43.3519;AC=3;AF=0.5;AN=6;AO=32;CIGAR=1X;DP=109;DPB=109;DPRA=0;EPP=72.4974;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1195;QR=3091;RO=77;RPL=0;RPP=72.4974;RPPR=170.214;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:15,15:15:606:15:546:-40.4411,0,-45.8472 0/1:22:19,3:19:764:3:110:-3.63824,0,-62.4589 0/1:57:43,14:43:1721:14:539:-31.6951,0,-137.956 dDocent_Contig_5024 45 . C T 190.453 . AB=0.857143;ABP=10.7656;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=30;DPB=30;DPRA=0.608696;EPP=16.0391;EPPR=46.8017;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.958333;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=963;RO=24;RPL=0;RPP=16.0391;RPPR=46.8017;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:523:0:0:0,-3.91339,-47.4175 0/0:10:10,0:10:399:0:0:0,-3.0103,-34.0845 0/1:7:1,6:1:41:6:244:-20.2314,0,-1.98736 dDocent_Contig_5025 1 . N G 252.746 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=52.375;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=272;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:103:-9.43196,-0.90309,0 1/1:5:0,5:0:0:5:169:-15.5402,-1.50515,0 dDocent_Contig_5026 53 . G A 52.0525 . AB=0.2;ABP=14.7363;AC=1;AF=0.25;AN=4;AO=3;CIGAR=1X;DP=22;DPB=22;DPRA=2.14286;EPP=9.52472;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=724;RO=19;RPL=3;RPP=9.52472;RPPR=44.2683;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:12,3:12:454:3:116:-6.30209,0,-36.6875 ./.:.:.:.:.:.:.:. 0/0:7:7,0:7:270:0:0:0,-2.10721,-24.6655 dDocent_Contig_5028 22 . A G 414.925 . AB=0.257143;ABP=38.8706;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X;DP=70;DPB=70;DPRA=0;EPP=42.0968;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=724;QR=2046;RO=52;RPL=0;RPP=42.0968;RPPR=115.927;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:13,8:13:479:8:324:-23.2076,0,-37.1155 0/1:21:15,6:15:604:6:245:-16.1078,0,-48.3764 0/1:28:24,4:24:963:4:155:-5.89381,0,-78.5444 dDocent_Contig_5030 8 . A T 73.9739 . AB=0.190476;ABP=20.4855;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1M2X2M1X2M1X1M4D1X1M1X2M1X;DP=37;DPB=36.2;DPRA=2.625;EPP=11.6962;EPPR=52.9542;GTI=0;LEN=1;MEANALT=3;MQM=40;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=853;RO=23;RPL=0;RPP=11.6962;RPPR=52.9542;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:8:4,0,0,2:4:152:0,0,2:0,0,14:0,-1.20412,-13.7567,-1.20412,-13.7567,-13.7567,-1.16751,-13.6413,-13.6413,-13.0392 0|1:21:11,3,4,3:11:402:3,4,3:113,155,21:-8.61796,-3.18795,-35.2155,0,-24.2397,-31.7486,-11.7266,-35.8746,-32.7116,-43.6726 0|0:8:8,0,0,0:8:299:0,0,0:0,0,0:0,-2.40824,-27.2655,-2.40824,-27.2655,-27.2655,-2.40824,-27.2655,-27.2655,-27.2655 dDocent_Contig_5032 80 . A C 138.597 . AB=0.461538;ABP=3.17734;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=37;DPB=37;DPRA=1.08333;EPP=16.0391;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.967742;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=1093;RO=31;RPL=3;RPP=3.0103;RPPR=3.08035;RPR=3;RUN=1;SAF=3;SAP=3.0103;SAR=3;SRF=16;SRP=3.08035;SRR=15;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:7,6:7:240:6:204:-14.7805,0,-18.0216 0/0:14:14,0:14:501:0:0:0,-4.21442,-45.4268 0/0:10:10,0:10:352:0:0:0,-3.0103,-32.0179 dDocent_Contig_5033 9 . T C 101.677 . AB=0.15;ABP=88.132;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=118;DPB=118;DPRA=0;EPP=35.5824;EPPR=226.672;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.941748;PAO=0;PQA=0;PQR=0;PRO=0;QA=516;QR=3717;RO=103;RPL=0;RPP=35.5824;RPPR=226.672;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:35,3:35:1200:3:117:0,-0.528759,-97.3634 0/1:45:40,5:40:1474:5:189:-3.82891,0,-119.386 0/1:35:28,7:28:1043:7:210:-8.65534,0,-83.6406 dDocent_Contig_5034 10 . C T 55.9069 . AB=0.3;ABP=6.48466;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=23;DPB=23;DPRA=1.53846;EPP=9.52472;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=41;MQMR=49.9;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.75;PAO=0;PQA=0;PQR=0;PRO=0;QA=110;QR=773;RO=20;RPL=0;RPP=9.52472;RPPR=46.4397;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:373:0:0:0,-3.0103,-28.9011 0/0:3:3,0:3:123:0:0:0,-0.90309,-11.4648 0/1:10:7,3:7:277:3:110:-6.81181,0,-18.3547 dDocent_Contig_5036 95 . G A 104.592 . AB=0.454545;ABP=3.20771;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=27;DPB=27;DPRA=1.375;EPP=13.8677;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=714;RO=22;RPL=5;RPP=13.8677;RPPR=50.7827;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4,0:4:134:0:0:0,-1.20412,-12.3909 0/0:12:12,0:12:376:0:0:0,-3.61236,-34.1441 0/1:11:6,5:6:204:5:163:-11.6807,0,-15.3825 dDocent_Contig_5037 12 . C T 33.5403 . AB=0.428571;ABP=3.63072;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X2M1X2M1X3M1X1M1X1M1X1M1X;DP=32;DPB=32;DPRA=1.78571;EPP=18.2106;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=16;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=978;RO=25;RPL=0;RPP=18.2106;RPPR=57.2971;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:7:7,0:7:277:0:0:0,-2.10721,-25.3 0|1:14:8,6:8:319:6:238:-4.57553,0,-24.8636 0|0:11:10,1:10:382:1:40:0,-1.71301,-33.1328 dDocent_Contig_5039 165 . C A 341.662 . AB=0.461538;ABP=3.34437;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=39;DPB=39;DPRA=1;EPP=29.068;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=484;QR=1045;RO=27;RPL=12;RPP=29.068;RPPR=61.6401;RPR=0;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:11,9:11:431:9:364:-27.1038,0,-33.1217 0/0:13:13,0:13:494:0:0:0,-3.91339,-44.7957 0/1:6:3,3:3:120:3:120:-9.38113,0,-9.38151 dDocent_Contig_5041 14 . G A 384.678 . AB=0.4;ABP=8.22183;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=60;DPB=60;DPRA=0;EPP=39.2015;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=36.875;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=758;QR=1435;RO=36;RPL=0;RPP=55.1256;RPPR=81.1833;RPR=24;RUN=1;SAF=2;SAP=39.2015;SAR=22;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:9,9:9:357:9:276:-16.7551,0,-27.0739 0/1:17:13,4:13:524:4:129:-6.54769,0,-42.3894 0/1:25:14,11:14:554:11:353:-18.8817,0,-42.6726 dDocent_Contig_5042 43 . G A 448.233 . AB=0.0930233;ABP=64.872;AC=3;AF=0.5;AN=6;AO=4;CIGAR=1X1M;DP=62;DPB=62;DPRA=0;EPP=11.6962;EPPR=92.0407;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=1537;RO=41;RPL=0;RPP=11.6962;RPPR=92.0407;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:19,1,3:19:721:1,3:35,120:-4.20237,-7.08662,-65.8856,0,-56.2991,-58.2423 0|1:20:15,4,1:15:546:4,1:155,39:-8.21641,0,-43.362,-9.52548,-41.3586,-53.7963 0|1:19:7,12,0:7:270:12,0:461,0:-36.121,0,-18.9461,-38.2282,-22.5584,-60.4018 dDocent_Contig_5043 20 . A C 288.477 . AB=0.325581;ABP=14.3727;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=43;DPB=43;DPRA=0;EPP=33.4109;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1.66667;MQM=52.8571;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.857143;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=550;QR=1067;RO=27;RPL=0;RPP=33.4109;RPPR=61.6401;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:14,7:14:555:7:277:-15.7802,0,-43.9723 0/1:17:11,5:11:431:5:191:-10.3784,0,-34.1817 0/1:5:2,2:2:81:2:82:-6.40575,0,-6.31346 dDocent_Contig_5044 1 . N G 127.125 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=54;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:140:-12.7114,-1.20412,0 ./.:.:.:.:.:.:.:. dDocent_Contig_5045 7 . G A 281.342 . AB=0.14375;ABP=179.388;AC=3;AF=0.5;AN=6;AO=23;CIGAR=1X;DP=160;DPB=160;DPRA=0;EPP=52.9542;EPPR=300.502;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.948905;PAO=0;PQA=0;PQR=0;PRO=0;QA=877;QR=4627;RO=137;RPL=0;RPP=52.9542;RPPR=300.502;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=137;SRP=300.502;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:41,11:41:1449:11:417:-22.2241,0,-115.027 0/1:59:52,7:52:1830:7:268:-6.72263,0,-147.183 0/1:49:44,5:44:1348:5:192:-2.89967,0,-106.814 dDocent_Contig_5046 123 . G T 434.491 . AB=0.367347;ABP=10.4997;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X2M1X;DP=49;DPB=49;DPRA=0;EPP=42.0968;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=675;QR=1014;RO=30;RPL=0;RPP=42.0968;RPPR=68.1545;RPR=18;RUN=1;SAF=0;SAP=42.0968;SAR=18;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:22:15,6:15:519:6:220:-13.6176,0,-40.5175 0|1:12:3,9:3:105:9:342:-27.524,0,-6.1838 0|1:15:12,3:12:390:3:113:-6.02409,0,-30.8991 dDocent_Contig_5048 12 . G T 178.675 . AB=0.666667;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=39;DPB=39;DPRA=0.647059;EPP=18.2106;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=277;QR=1275;RO=32;RPL=0;RPP=18.2106;RPPR=72.4974;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:679:0:0:0,-5.11751,-61.4409 0/0:13:12,1:12:476:1:39:0,-0.0168255,-39.294 0/1:9:3,6:3:120:6:238:-19.0838,0,-8.47842 dDocent_Contig_5049 16 . G A 39.4638 . AB=0.15;ABP=24.2907;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=30;DPB=30;DPRA=4;EPP=9.52472;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=1076;RO=27;RPL=0;RPP=9.52472;RPPR=61.6401;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2,0:2:74:0:0:0,-0.60206,-7.02577 0/1:20:17,3:17:684:3:120:-5.16671,0,-55.8699 0/0:8:8,0:8:318:0:0:0,-2.40824,-28.9857 dDocent_Contig_5050 18 . G T 91.7844 . AB=0.153846;ABP=43.6001;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=140;DPB=140;DPRA=5.33333;EPP=29.068;EPPR=278.787;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.984252;PAO=0;PQA=0;PQR=0;PRO=0;QA=483;QR=5044;RO=127;RPL=0;RPP=29.068;RPPR=278.787;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=127;SRP=278.787;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:480:0:0:0,-3.61236,-43.5519 0/1:39:32,6:32:1267:6:243:-10.4003,0,-102.457 0/0:89:83,6:83:3297:6:240:0,-4.81622,-274.822 dDocent_Contig_5051 16 . A G 168.712 . AB=0.35;ABP=6.91895;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=73;DPB=73;DPRA=0.754717;EPP=18.2106;EPPR=129.482;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.909091;PAO=0;PQA=0;PQR=0;PRO=0;QA=264;QR=2623;RO=66;RPL=0;RPP=18.2106;RPPR=146.327;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=64;SRP=129.482;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:30,0:30:1180:0:0:0,-9.0309,-106.483 0/1:20:13,7:13:521:7:264:-18.0931,0,-41.2172 0/0:23:23,0:23:922:0:0:0,-6.92369,-83.2831 dDocent_Contig_5052 142 . T C 88.5321 . AB=0.444444;ABP=3.25157;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=40;DPB=40;DPRA=0.580645;EPP=11.6962;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=135;QR=1182;RO=36;RPL=0;RPP=11.6962;RPPR=81.1833;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=81.1833;SRR=36;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:5,4:5:162:4:135:-9.77403,0,-12.1908 0/0:20:20,0:20:641:0:0:0,-6.0206,-57.9951 0/0:11:11,0:11:379:0:0:0,-3.31133,-34.4422 dDocent_Contig_5053 16 . T G 373.028 . AB=0.157895;ABP=22.325;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X1M2X1M;DP=56;DPB=56;DPRA=0;EPP=9.52472;EPPR=83.3548;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=113;QR=1443;RO=37;RPL=0;RPP=9.52472;RPPR=83.3548;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:21:16,0,5,0:16:619:0,5,0:0,202,0:-12.2402,-17.0567,-67.8879,0,-51.2307,-49.7255,-17.0567,-67.8879,-51.2307,-67.8879 0|1:19:13,3,0,2:13:509:3,0,2:113,0,79:-5.33494,0,-40.9439,-9.24833,-41.847,-51.1044,-2.74406,-35.3458,-44.6029,-44.0008 0|0:16:8,0,0,8:8:315:0,0,8:0,0,310:-23.444,-25.8522,-51.769,-25.8522,-51.769,-51.769,0,-26.307,-26.307,-23.8987 dDocent_Contig_5054 78 . G T 130.611 . AB=0.28;ABP=13.5202;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=50;DPB=50;DPRA=0.5;EPP=18.2106;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.880952;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=1408;RO=42;RPL=3;RPP=3.32051;RPPR=3.21711;RPR=4;RUN=1;SAF=3;SAP=3.32051;SAR=4;SRF=20;SRP=3.21711;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:16,2:16:552:2:69:-1.13412,0,-44.5885 0/0:25:25,0:25:824:0:0:0,-7.52575,-74.4646 0/1:7:1,5:1:32:5:173:-13.8881,0,-1.13817 dDocent_Contig_5055 9 . G A 158.578 . AB=0.275862;ABP=15.6647;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=42;DPB=42;DPRA=0;EPP=22.5536;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=326;QR=1215;RO=33;RPL=0;RPP=22.5536;RPPR=74.6689;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:18,6:18:652:6:218:-12.7481,0,-51.7795 0/1:5:3,2:3:115:2:73:-5.42615,0,-9.21974 0/0:13:12,1:12:448:1:35:0,-0.414761,-37.1644 dDocent_Contig_5056 9 . G A 191.875 . AB=0.238095;ABP=28.0339;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X3M1X;DP=58;DPB=58;DPRA=1.3125;EPP=24.725;EPPR=105.07;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=372;QR=1739;RO=47;RPL=0;RPP=24.725;RPPR=105.07;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:18:13,4:13:487:4:150:-8.39347,0,-38.7052 0|1:24:18,6:18:666:6:222:-13.1128,0,-53.0465 0|0:16:16,0:16:586:0:0:0,-4.81648,-53.0728 dDocent_Contig_5058 10 . T A 64.6136 . AB=0.139535;ABP=51.5402;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=56;DPB=56;DPRA=1.65385;EPP=16.0391;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=233;QR=1733;RO=50;RPL=0;RPP=16.0391;RPPR=111.584;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:461:0:0:0,-3.91339,-41.8231 0/1:31:27,4:27:910:4:157:-5.17687,0,-72.8631 0/1:12:10,2:10:362:2:76:-3.60231,0,-29.3097 dDocent_Contig_5060 24 . G T 62.3726 . AB=0.230769;ABP=11.1951;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=43;DPB=43;DPRA=0.866667;EPP=9.52472;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1507;RO=40;RPL=0;RPP=9.52472;RPPR=89.8692;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:419:0:0:0,-3.61236,-38.0391 0/1:13:10,3:10:394:3:122:-7.4591,0,-31.9047 0/0:18:18,0:18:694:0:0:0,-5.41854,-62.7796 dDocent_Contig_5061 24 . A C 235.218 . AB=0.297297;ABP=16.2152;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=46;DPB=46;DPRA=2.05556;EPP=26.8965;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=403;QR=1383;RO=35;RPL=0;RPP=26.8965;RPPR=79.0118;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:13,2:13:512:2:74:-2.51032,0,-41.9112 0/0:9:9,0:9:345:0:0:0,-2.70927,-31.4049 0/1:22:13,9:13:526:9:329:-23.3192,0,-41.0643 dDocent_Contig_5062 7 . G A 326.686 . AB=0.190476;ABP=90.3862;AC=2;AF=0.333333;AN=6;AO=21;CIGAR=1X1M;DP=133;DPB=133;DPRA=0;EPP=48.6112;EPPR=61.1024;GTI=0;LEN=1;MEANALT=2.33333;MQM=55.619;MQMR=58.4857;NS=3;NUMALT=2;ODDS=0;PAIRED=0.904762;PAIREDR=0.619048;PAO=0;PQA=0;PQR=0;PRO=0;QA=737;QR=3661;RO=105;RPL=0;RPP=48.6112;RPPR=231.015;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=79;SRP=61.1024;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:28:26,0,1:26:904:0,1:0,16:0,-7.82678,-81.5319,-6.94357,-80.6663,-80.3653 0|1:48:41,0,5:41:1480:0,5:0,185:-2.97546,-15.3177,-134.477,0,-119.342,-117.837 0|1:57:38,3,15:38:1277:3,15:115,536:-32.0081,-34.0023,-136.366,0,-93.8314,-98.7586 dDocent_Contig_5063 92 . C T 330.189 . AB=0.375;ABP=4.09604;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=27;DPB=27;DPRA=0;EPP=29.068;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=429;QR=532;RO=15;RPL=12;RPP=29.068;RPPR=35.5824;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:10,1:10:352:1:33:0,-0.0121951,-28.7187 0/1:8:5,3:5:180:3:108:-7.66684,0,-14.1438 1/1:8:0,8:0:0:8:288:-26.2672,-2.40824,0 dDocent_Contig_5064 94 . T C 92.6786 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X3M1X;DP=3;DPB=8.2;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.29832;PAIRED=1;PAIREDR=0;PAO=9;PQA=313;PQR=0;PRO=0;QA=103;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,3:0:0:3:103:-9.2657,-0.90309,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_5065 7 . G A 95.9618 . AB=0.217391;ABP=18.9659;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=54;DPB=54;DPRA=1.48387;EPP=13.8677;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=1826;RO=49;RPL=0;RPP=13.8677;RPPR=109.412;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1008:0:0:0,-8.12781,-91.0307 0/1:23:18,5:18:668:5:193:-10.8177,0,-53.5273 0/0:4:4,0:4:150:0:0:0,-1.20412,-13.8654 dDocent_Contig_5066 10 . G A 34.4455 . AB=0.25;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=2X1M2X1M2X3M2X1M2X;DP=15;DPB=15;DPRA=2.28571;EPP=7.35324;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=489;RO=13;RPL=0;RPP=7.35324;RPPR=31.2394;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:5:5,0:5:186:0:0:0,-1.50515,-17.1015 0|0:2:2,0:2:73:0:0:0,-0.60206,-6.9313 0|1:8:6,2:6:230:2:81:-4.66461,0,-18.6584 dDocent_Contig_5067 9 . G T 34.7808 . AB=0.285714;ABP=5.80219;AC=1;AF=0.25;AN=4;AO=2;CIGAR=2X1M1X;DP=16;DPB=16;DPRA=0.777778;EPP=7.35324;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=38;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=503;RO=14;RPL=0;RPP=7.35324;RPPR=33.4109;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 0|1:7:5,2:5:176:2:77:-4.57482,0,-14.0737 0|0:9:9,0:9:327:0:0:0,-2.70927,-29.7731 dDocent_Contig_5068 7 . G A 49.7616 . AB=0.148148;ABP=32.0437;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=104;DPB=104;DPRA=0;EPP=20.3821;EPPR=194.462;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.75;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.5;PAIREDR=0.75;PAO=0;PQA=0;PQR=0;PRO=0;QA=312;QR=3403;RO=96;RPL=0;RPP=20.3821;RPPR=211.472;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=94;SRP=194.462;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:26,2:26:933:2:79:0,-0.931208,-74.5652 0/0:49:47,2:47:1668:2:78:0,-7.347,-142.98 0/1:27:23,4:23:802:4:155:-6.19733,0,-64.3581 dDocent_Contig_5069 32 . C A 86.2182 . AB=0.222222;ABP=9.04217;AC=3;AF=0.500001;AN=6;AO=2;CIGAR=6M1X2M24I2M;DP=31;DPB=61.5455;DPRA=0;EPP=7.35324;EPPR=39.9253;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=71;QR=660;RO=17;RPL=0;RPP=7.35324;RPPR=39.9253;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:12:9,3,0,0:9:351:3,0,0:63,0,0:-1.71609,0,-28.339,-4.42536,-29.2421,-33.4273,-4.42536,-29.2421,-33.4273,-33.4273 0|1:10:6,0,4,0:6:229:0,4,0:0,96,0:-5.31503,-7.12121,-26.0019,0,-19.1683,-17.9642,-7.12121,-26.0019,-19.1683,-26.0019 0|1:9:2,3,2,2:2:80:3,2,2:45,37,71:-5.24266,-3.5559,-9.28619,-3.12543,-7.52569,-9.16647,0,-4.38327,-3.94833,-6.06045 dDocent_Contig_5071 23 . A G 296.929 . AB=0.526316;ABP=3.12459;AC=1;AF=0.25;AN=4;AO=10;CIGAR=1X;DP=31;DPB=31;DPRA=1.58333;EPP=24.725;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=405;QR=823;RO=21;RPL=0;RPP=24.725;RPPR=48.6112;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:468:0:0:0,-3.61236,-42.4668 0/1:19:9,10:9:355:10:405:-31.0908,0,-26.5923 ./.:.:.:.:.:.:.:. dDocent_Contig_5072 126 . G T 168.882 . AB=0.538462;ABP=3.17734;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=34;DPB=34;DPRA=1.2381;EPP=18.2106;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=961;RO=27;RPL=0;RPP=18.2106;RPPR=61.6401;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:375:0:0:0,-3.31133,-34.0769 0/1:13:6,7:6:218:7:241:-18.1101,0,-16.0594 0/0:10:10,0:10:368:0:0:0,-3.0103,-33.469 dDocent_Contig_5073 18 . T A 631.567 . AB=0.583333;ABP=5.18177;AC=2;AF=0.333333;AN=6;AO=23;CIGAR=1X;DP=65;DPB=65;DPRA=0;EPP=52.9542;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=919;QR=1643;RO=42;RPL=0;RPP=52.9542;RPPR=94.2121;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:27,2:27:1066:2:79:0,-1.23263,-88.7374 0/1:16:10,6:10:376:6:239:-17.068,0,-29.3712 0/1:20:5,15:5:201:15:601:-48.4071,0,-12.4503 dDocent_Contig_5075 7 . G A 67.8866 . AB=0.166667;ABP=31.9633;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=43;DPB=43;DPRA=1.15385;EPP=13.8677;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=184;QR=1291;RO=37;RPL=0;RPP=13.8677;RPPR=83.3548;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:15,4:15:559:4:145:-7.6851,0,-44.9286 0/1:11:9,1:9:325:1:39:-0.636437,0,-26.4478 0/0:13:13,0:13:407:0:0:0,-3.91339,-36.9212 dDocent_Contig_5076 42 . G C 466.738 . AB=0.380952;ABP=5.59539;AC=4;AF=0.666667;AN=6;AO=15;CIGAR=1X;DP=28;DPB=28;DPRA=0;EPP=35.5824;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=602;QR=525;RO=13;RPL=0;RPP=35.5824;RPPR=31.2394;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:5,3:5:201:3:116:-8.4093,0,-16.0627 0/1:13:8,5:8:324:5:204:-14.8306,0,-25.6154 1/1:7:0,7:0:0:7:282:-25.7526,-2.10721,0 dDocent_Contig_5077 33 . A C 31.8226 . AB=0.142857;ABP=26.2761;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X2M1X;DP=42;DPB=42;DPRA=2;EPP=9.52472;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=1527;RO=39;RPL=0;RPP=9.52472;RPPR=87.6977;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:3:3,0:3:120:0:0:0,-0.90309,-11.1877 0|0:18:18,0:18:705:0:0:0,-5.41854,-63.7809 0|1:21:18,3:18:702:3:115:-4.4031,0,-57.1881 dDocent_Contig_5078 95 . G A 49.159 . AB=0.181818;ABP=22.3561;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=63;DPB=63;DPRA=1.07317;EPP=11.6962;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=138;QR=2029;RO=59;RPL=4;RPP=11.6962;RPPR=131.127;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1063:0:0:0,-9.33193,-95.9785 0/0:10:10,0:10:346:0:0:0,-3.0103,-31.4746 0/1:22:18,4:18:620:4:138:-6.13774,0,-49.5014 dDocent_Contig_5079 54 . T A 1208.49 . AB=0.368852;ABP=21.2364;AC=3;AF=0.5;AN=6;AO=45;CIGAR=1X;DP=122;DPB=122;DPRA=0;EPP=100.727;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1781;QR=2984;RO=77;RPL=45;RPP=100.727;RPPR=170.214;RPR=0;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:20,20:20:778:20:797:-60.0082,0,-58.2971 0/1:48:32,16:32:1236:16:644:-43.8438,0,-97.0594 0/1:34:25,9:25:970:9:340:-20.7139,0,-77.3661 dDocent_Contig_5080 33 . C G 806.65 . AB=0.329787;ABP=26.6655;AC=3;AF=0.5;AN=6;AO=31;CIGAR=1X;DP=94;DPB=94;DPRA=0;EPP=70.3259;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.968254;PAO=0;PQA=0;PQR=0;PRO=0;QA=1240;QR=2518;RO=63;RPL=0;RPP=70.3259;RPPR=139.813;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:5,20:5:201:20:794:-64.2528,0,-10.9448 0/1:47:39,8:39:1550:8:325:-15.4712,0,-125.598 0/1:22:19,3:19:767:3:121:-4.65754,0,-62.7283 dDocent_Contig_5081 23 . C T 269.499 . AB=0.384615;ABP=6.01695;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=56;DPB=56;DPRA=1.73333;EPP=24.725;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.977778;PAO=0;PQA=0;PQR=0;PRO=0;QA=396;QR=1761;RO=45;RPL=0;RPP=24.725;RPPR=100.727;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3,0:3:110:0:0:0,-0.90309,-10.2592 0/1:26:16,10:16:614:10:396:-28.171,0,-47.7658 0/0:27:26,0:26:1037:0:0:0,-7.82678,-93.4556 dDocent_Contig_5082 24 . G A 66.5413 . AB=0.272727;ABP=7.94546;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=55;DPB=55;DPRA=0.5;EPP=9.52472;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.6538;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.557692;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=2032;RO=52;RPL=0;RPP=9.52472;RPPR=115.927;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:698:0:0:0,-5.41854,-62.9551 0/0:26:26,0:26:1011:0:0:0,-7.82678,-91.2878 0/1:11:8,3:8:323:3:120:-7.87598,0,-26.1273 dDocent_Contig_5083 7 . G A 36.9648 . AB=0.25;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=29;DPB=29;DPRA=0.761905;EPP=7.35324;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=74;QR=925;RO=27;RPL=0;RPP=7.35324;RPPR=61.6401;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:6,2:6:207:2:74:-4.61719,0,-16.5568 0/0:12:12,0:12:434:0:0:0,-3.61236,-39.3988 0/0:9:9,0:9:284:0:0:0,-2.70927,-25.8635 dDocent_Contig_5084 7 . G T 182.314 . AB=0.466667;ABP=3.15506;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=26;DPB=26;DPRA=0;EPP=20.3821;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=281;QR=597;RO=18;RPL=0;RPP=20.3821;RPPR=42.0968;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:7,3:7:261:3:116:-7.8074,0,-20.8367 0/1:5:1,4:1:39:4:154:-12.7283,0,-2.39141 0/0:11:10,1:10:297:1:11:0,-2.21133,-25.9143 dDocent_Contig_5085 7 . G A 3238.9 . AB=0.693252;ABP=55.885;AC=4;AF=0.666667;AN=6;AO=113;CIGAR=1X4M;DP=163;DPB=163.2;DPRA=0;EPP=248.387;EPPR=79.0118;GTI=0;LEN=1;MEANALT=2;MQM=50.0088;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.929204;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4054;QR=1300;RO=35;RPL=0;RPP=248.387;RPPR=79.0118;RPR=113;RUN=1;SAF=113;SAP=248.387;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:73:2,7,64:2:77:7,64:251,2244:-191.448,-171.58,-175.796,-14.1201,0,-1.18242 0|1:47:20,5,22:20:739:5,22:195,773:-55.9838,-45.9658,-104.921,0,-44.4253,-53.838 0|1:43:13,3,27:13:484:3,27:113,1037:-79.8791,-74.5331,-113.244,0,-30.3526,-31.4851 dDocent_Contig_5086 120 . T G 360.143 . AB=0.323529;ABP=12.2071;AC=4;AF=0.666667;AN=6;AO=16;CIGAR=1X;DP=39;DPB=39;DPRA=0;EPP=37.7539;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=529;QR=777;RO=23;RPL=0;RPP=37.7539;RPPR=52.9542;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:16,9:16:534:9:303:-20.0723,0,-40.8531 1/1:5:0,5:0:0:5:166:-15.2676,-1.50515,0 0/1:9:7,2:7:243:2:60:-2.9893,0,-19.4996 dDocent_Contig_5088 8 . A G 188.385 . AB=0.0571429;ABP=62.6327;AC=2;AF=0.333334;AN=6;AO=2;CIGAR=1X1M2X3M1X;DP=71;DPB=71;DPRA=0;EPP=7.35324;EPPR=111.584;GTI=0;LEN=1;MEANALT=4;MQM=30.5;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=73;QR=1886;RO=50;RPL=0;RPP=7.35324;RPPR=111.584;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:35:26,4,2,2,0:26:982:4,2,2,0:138,55,73,0:-3.40014,0,-79.3892,-6.88522,-76.2526,-86.8329,-6.56699,-75.9381,-82.7797,-86.5186,-11.2269,-80.5933,-87.435,-87.1207,-91.7765 0|0:19:9,0,4,0,6:9:348:0,4,0,6:0,144,0,240:-17.1206,-19.8298,-48.4267,-10.2858,-38.8621,-37.658,-19.8298,-48.4267,-38.8621,-48.4267,0,-28.6442,-19.0869,-28.6442,-26.838 0|1:17:15,0,2,0,0:15:556:0,2,0,0:0,75,0,0:-1.99822,-6.51367,-52.0004,0,-45.8607,-45.2587,-6.51367,-52.0004,-45.8607,-52.0004,-6.51367,-52.0004,-45.8607,-52.0004,-52.0004 dDocent_Contig_5089 7 . G C 383.407 . AB=0.203883;ABP=81.4574;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X;DP=103;DPB=103;DPRA=0;EPP=48.6112;EPPR=178.9;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=798;QR=2852;RO=81;RPL=0;RPP=48.6112;RPPR=178.9;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:30,5:30:1088:5:186:-6.56502,0,-87.6819 0/1:42:33,8:33:1197:8:302:-15.0556,0,-95.562 0/1:26:18,8:18:567:8:310:-20.4368,0,-43.4918 dDocent_Contig_5090 19 . G T 110.933 . AB=0.16;ABP=53.2147;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=69;DPB=69;DPRA=1.31579;EPP=20.3821;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.625;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=308;QR=2433;RO=61;RPL=0;RPP=20.3821;RPPR=135.47;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:755:0:0:0,-5.71957,-68.2706 0/1:23:19,4:19:749:4:148:-6.7561,0,-60.8112 0/1:27:23,4:23:929:4:160:-6.65599,0,-75.7858 dDocent_Contig_5091 42 . A G 31.5306 . AB=0.181818;ABP=12.6832;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=24;DPB=24;DPRA=1.69231;EPP=7.35324;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.818182;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=882;RO=22;RPL=0;RPP=7.35324;RPPR=50.7827;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:324:0:0:0,-2.40824,-29.5294 0/0:5:5,0:5:197:0:0:0,-1.50515,-18.1059 0/1:11:9,2:9:361:2:81:-4.3744,0,-29.5426 dDocent_Contig_5094 114 . G T 56.0716 . AB=0.2;ABP=18.6449;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=23;DPB=23;DPRA=3.33333;EPP=11.6962;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=141;QR=663;RO=19;RPL=0;RPP=11.6962;RPPR=44.2683;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:8,3:8:271:3:105:-6.48464,0,-21.4089 0/0:3:3,0:3:106:0:0:0,-0.90309,-9.8891 0/1:9:8,1:8:286:1:36:-0.889005,0,-23.3763 dDocent_Contig_5095 14 . A C 40.3141 . AB=0.1875;ABP=16.582;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=60;DPB=60;DPRA=0.727273;EPP=9.52472;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=108;QR=2237;RO=57;RPL=0;RPP=9.52472;RPPR=126.784;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:705:0:0:0,-5.41854,-63.7748 0/1:16:13,3:13:501:3:108:-5.25322,0,-40.6193 0/0:26:26,0:26:1031:0:0:0,-7.82678,-93.0845 dDocent_Contig_5096 7 . G A 103.595 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=3;CIGAR=5I1X1M1X3M1X2M1X1M1X2M1X3M1X;DP=9;DPB=11.6842;DPRA=1;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=50;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=21;PQA=768;PQR=525;PRO=13;QA=107;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,3:0:0:3:107:-9.57521,-0.90309,0 1|1:2:0,0:0:0:0:0:0,0,0 1|1:4:0,0:0:0:0:0:0,0,0 dDocent_Contig_5097 193 . A G 46.0619 . AB=0.16;ABP=28.1125;AC=2;AF=0.5;AN=4;AO=4;CIGAR=1X;DP=25;DPB=25;DPRA=0;EPP=11.6962;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=808;RO=21;RPL=4;RPP=11.6962;RPPR=48.6112;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:17:15,2:15:597:2:82:-2.66217,0,-48.9494 0/1:8:6,2:6:211:2:72:-4.427,0,-16.9106 dDocent_Contig_5098 83 . G A 67.027 . AB=0.162162;ABP=39.6906;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=55;DPB=55;DPRA=4.11111;EPP=16.0391;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=208;QR=1626;RO=49;RPL=6;RPP=16.0391;RPPR=109.412;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:553:0:0:0,-5.11751,-50.0781 0/1:37:31,6:31:1044:6:208:-7.92148,0,-83.1264 0/0:1:1,0:1:29:0:0:0,-0.30103,-2.89966 dDocent_Contig_5099 58 . T C 124.595 . AB=0.3;ABP=9.95901;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=45;DPB=45;DPRA=1.6;EPP=16.0391;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=215;QR=1374;RO=39;RPL=4;RPP=4.45795;RPPR=3.06598;RPR=2;RUN=1;SAF=4;SAP=4.45795;SAR=2;SRF=20;SRP=3.06598;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:841:0:0:0,-7.22472,-76.0043 0/1:20:14,6:14:496:6:215:-13.6784,0,-38.9531 0/0:1:1,0:1:37:0:0:0,-0.30103,-3.69783 dDocent_Contig_5100 4 . T C 313.25 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=17;CIGAR=10I1X2M1X;DP=22;DPB=112.5;DPRA=5;EPP=39.9253;EPPR=0;GTI=0;LEN=1;MEANALT=2.5;MQM=20.2941;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=175;PQA=5225;PQR=74;PRO=2;QA=599;QR=0;RO=0;RPL=0;RPP=39.9253;RPPR=0;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:6:0,5:0:0:5:179:-7.62002,-1.50515,0 1|1:14:0,12:0:0:12:420:-23.0024,-3.61236,0 1|1:2:0,0:0:0:0:0:0,0,0 dDocent_Contig_5102 70 . A C 138.8 . AB=0.259259;ABP=16.6021;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=35;DPB=35;DPRA=1.6875;EPP=18.2106;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=262;QR=1000;RO=28;RPL=7;RPP=18.2106;RPPR=63.8115;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:279:0:0:0,-2.40824,-25.447 0/1:23:18,5:18:651:5:182:-9.81104,0,-51.9962 0/1:4:2,2:2:70:2:80:-6.38767,0,-5.44321 dDocent_Contig_5103 19 . C T 148.578 . AB=0.25;ABP=20.3821;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=2X;DP=40;DPB=40;DPRA=2;EPP=20.3821;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=290;QR=1244;RO=32;RPL=0;RPP=20.3821;RPPR=72.4974;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:18:14,4:14:549:4:142:-7.71032,0,-44.3341 0|1:14:10,4:10:392:4:148:-9.46625,0,-31.4235 0|0:8:8,0:8:303:0:0:0,-2.40824,-27.6197 dDocent_Contig_5104 7 . G A 1688.35 . AB=0.0260417;ABP=377.635;AC=0;AF=0;AN=6;AO=5;CIGAR=1X3M1X9M;DP=192;DPB=192.714;DPRA=0;EPP=13.8677;EPPR=63.8115;GTI=0;LEN=1;MEANALT=13.3333;MQM=36.6;MQMR=60;NS=3;NUMALT=7;ODDS=2.77556e-17;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=177;QR=1062;RO=28;RPL=0;RPP=13.8677;RPPR=63.8115;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:66:8,1,6,4,1,3,1,32:8:300:1,6,4,1,3,1,32:27,42,141,5,117,26,915:-67.5372,-68.0868,-92.373,-69.3722,-92.1001,-92.1518,-59.1585,-81.8891,-83.1741,-82.5434,-70.0037,-92.7322,-94.0168,-83.8058,-94.2894,-60.7482,-83.4786,-84.7631,-74.5515,-85.3951,-84.4339,-68.1769,-90.9058,-92.1901,-81.9792,-92.8222,-83.5686,-92.463,0,-22.7573,-24.0598,-13.8222,-24.6769,-15.4123,-22.8475,-14.9833 0|0:76:10,1,7,1,1,1,6,33:10:373:1,7,1,1,1,6,33:34,49,26,30,40,134,975:-70.5748,-70.9323,-101.183,-72.9152,-100.812,-101.357,-71.8169,-99.7156,-101.697,-102.067,-71.4565,-99.3554,-101.336,-100.24,-101.707,-70.415,-98.314,-100.295,-99.1984,-98.8382,-100.666,-64.9477,-92.847,-94.8305,-93.7314,-93.3712,-92.3297,-93.6932,0,-27.9185,-29.9178,-28.8039,-28.4433,-27.4008,-21.9383,-20.638 0|0:50:10,3,0,0,3,8,4,16:10:389:3,0,0,3,8,4,16:116,0,0,90,240,80,485:-34.4395,-28.6763,-59.7685,-37.4498,-60.6716,-69.4421,-37.4498,-60.6716,-69.4421,-69.4421,-31.0653,-54.2884,-63.0591,-63.0591,-62.156,-19.5434,-42.7695,-51.5407,-51.5407,-45.1582,-49.1324,-32.261,-55.4829,-64.2531,-64.2531,-57.8709,-46.3541,-63.049,0,-23.2348,-32.0072,-32.0072,-25.6252,-14.1078,-26.8239,-27.1908 dDocent_Contig_5105 98 . N A 123.923 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=134;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:134:-12.3912,-1.20412,0 ./.:.:.:.:.:.:.:. dDocent_Contig_5106 7 . G A 166.013 . AB=0.208333;ABP=38.4777;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=74;DPB=74;DPRA=0;EPP=26.8965;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=388;QR=2256;RO=63;RPL=0;RPP=26.8965;RPPR=139.813;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:25,8:25:892:8:301:-17.5124,0,-70.6469 0/0:26:25,1:25:918:1:37:0,-4.12895,-79.2342 0/1:15:13,2:13:446:2:50:-0.231282,0,-35.9403 dDocent_Contig_5107 26 . C T 72.5823 . AB=0.3;ABP=6.48466;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=25;DPB=25;DPRA=1.33333;EPP=9.52472;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=885;RO=22;RPL=0;RPP=9.52472;RPPR=50.7827;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:7,3:7:285:3:120:-8.1776,0,-23.0141 0/0:13:13,0:13:518:0:0:0,-3.91339,-46.9671 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 dDocent_Contig_5108 15 . G T 187.648 . AB=0.25;ABP=20.3821;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=112;DPB=112;DPRA=0.8;EPP=20.3821;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=325;QR=4177;RO=104;RPL=0;RPP=20.3821;RPPR=228.843;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:35:35,0:35:1401:0:0:0,-10.536,-126.342 0/0:45:45,0:45:1806:0:0:0,-13.5463,-162.753 0/1:32:24,8:24:970:8:325:-19.9867,0,-77.966 dDocent_Contig_5109 27 . C G 998.193 . AB=0.422222;ABP=7.73928;AC=3;AF=0.5;AN=6;AO=38;CIGAR=1X;DP=90;DPB=90;DPRA=0;EPP=85.5263;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1440;QR=1970;RO=52;RPL=0;RPP=85.5263;RPPR=115.927;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:16,15:16:597:15:569:-42.2168,0,-44.7307 0/1:36:31,5:31:1180:5:195:-7.08648,0,-95.6513 0/1:23:5,18:5:193:18:676:-54.2327,0,-10.8139 dDocent_Contig_5110 34 . G A 472.796 . AB=0.0909091;ABP=34.9902;AC=0;AF=0;AN=6;AO=2;CIGAR=1X6M1X4M;DP=43;DPB=43;DPRA=0;EPP=7.35324;EPPR=48.6112;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=776;RO=21;RPL=0;RPP=7.35324;RPPR=48.6112;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:22:12,3,2,5:12:450:3,2,5:103,81,203:-13.149,-8.41874,-44.3535,-10.0777,-38.5753,-46.3283,0,-28.5072,-30.1787,-35.357 0|0:15:8,0,0,7:8:288:0,0,7:0,0,280:-21.0561,-23.4643,-46.9383,-23.4643,-46.9383,-46.9383,0,-23.8549,-23.8549,-21.7477 0|0:6:1,0,0,5:1:38:0,0,5:0,0,202:-16.7557,-17.0567,-20.1693,-17.0567,-20.1693,-20.1693,0,-3.49624,-3.49624,-1.99109 dDocent_Contig_5111 85 . G T 35.0789 . AB=0.25;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=43;DPB=43;DPRA=0.764706;EPP=9.52472;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=108;QR=1431;RO=40;RPL=3;RPP=9.52472;RPPR=89.8692;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:6,2:6:215:2:72:-4.42848,0,-17.2909 0/0:17:17,0:17:609:0:0:0,-5.11751,-55.1426 0/0:18:17,1:17:607:1:36:0,-1.82026,-51.3635 dDocent_Contig_5112 14 . C G 134.117 . AB=0.233333;ABP=21.5402;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=119;DPB=119;DPRA=0.674157;EPP=18.2106;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.875;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=259;QR=4282;RO=112;RPL=0;RPP=18.2106;RPPR=246.215;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:42,0:42:1555:0:0:0,-12.6433,-140.198 0/1:30:23,7:23:864:7:259:-14.6336,0,-69.0376 0/0:47:47,0:47:1863:0:0:0,-14.1484,-167.882 dDocent_Contig_5114 64 . A G 37.8548 . AB=0.222222;ABP=9.04217;AC=1;AF=0.25;AN=4;AO=2;CIGAR=1X;DP=18;DPB=18;DPRA=1;EPP=7.35324;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=648;RO=16;RPL=2;RPP=7.35324;RPPR=37.7539;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:9:7,2:7:283:2:80:-4.8823,0,-23.1337 0/0:9:9,0:9:365:0:0:0,-2.70927,-33.2149 dDocent_Contig_5115 14 . C G 210.725 . AB=0.290323;ABP=14.8483;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=31;DPB=31;DPRA=0;EPP=22.5536;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=366;QR=875;RO=22;RPL=0;RPP=22.5536;RPPR=50.7827;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:6,3:6:242:3:121:-8.57093,0,-19.4483 0/1:3:2,1:2:79:1:41:-3.19148,0,-6.59415 0/1:19:14,5:14:554:5:204:-13.0245,0,-44.4826 dDocent_Contig_5116 70 . G C 127.386 . AB=0.555556;ABP=3.25157;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=28;DPB=28;DPRA=0.947368;EPP=13.8677;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=178;QR=786;RO=23;RPL=5;RPP=13.8677;RPPR=52.9542;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:4,5:4:140:5:178:-13.6594,0,-10.2356 0/0:9:9,0:9:310:0:0:0,-2.70927,-28.2338 0/0:10:10,0:10:336:0:0:0,-3.0103,-30.5659 dDocent_Contig_5117 7 . G A 1073.84 . AB=0.622951;ABP=11.0198;AC=3;AF=0.5;AN=6;AO=38;CIGAR=1X;DP=61;DPB=61;DPRA=0;EPP=85.5263;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=59.7632;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.789474;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1427;QR=824;RO=23;RPL=0;RPP=85.5263;RPPR=52.9542;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:260:2:76:-4.5054,0,-21.0465 0/1:34:7,27:7:255:27:1004:-80.4256,0,-13.0632 0/1:18:9,9:9:309:9:347:-26.1692,0,-22.7168 dDocent_Contig_5119 30 . A T 292.478 . AB=0.444444;ABP=3.73412;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=27;DPB=27;DPRA=0;EPP=29.068;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=56.25;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=445;QR=575;RO=15;RPL=0;RPP=29.068;RPPR=35.5824;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:7,4:7:277:4:152:-10.7278,0,-21.9884 0/1:8:6,2:6:217:2:76:-4.77374,0,-17.4673 0/1:8:2,6:2:81:6:217:-17.4629,0,-5.27749 dDocent_Contig_5120 35 . C G 118.512 . AB=0.153846;ABP=30.0702;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=5M1X3M;DP=41;DPB=37.8889;DPRA=3.25;EPP=11.6962;EPPR=74.6689;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=153;QR=1284;RO=33;RPL=0;RPP=11.6962;RPPR=74.6689;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:7:4,3,0:4:139:3,0:107,0:-7.87255,0,-10.7423,-9.07667,-11.6454,-20.3696 0|1:26:21,1,4:21:827:1,4:30,153:-6.29735,-10.2368,-77.9795,0,-65.7291,-66.9193 0|0:8:8,0,0:8:318:0,0:0,0:0,-2.40824,-28.9876,-2.40824,-28.9876,-28.9876 dDocent_Contig_5121 154 . T C 130.067 . AB=0.333333;ABP=6.62942;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=43;DPB=43;DPRA=1.07143;EPP=13.8677;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=1494;RO=38;RPL=0;RPP=13.8677;RPPR=85.5263;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=85.5263;SRR=38;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:585:0:0:0,-4.51545,-52.9896 0/0:13:13,0:13:520:0:0:0,-3.91339,-47.1473 0/1:15:10,5:10:389:5:204:-14.2286,0,-30.847 dDocent_Contig_5123 25 . T C 291.818 . AB=0.229508;ABP=41.7764;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=74;DPB=74;DPRA=2.34615;EPP=3.0103;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=56.2857;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.916667;PAO=0;PQA=0;PQR=0;PRO=0;QA=549;QR=2264;RO=60;RPL=0;RPP=33.4109;RPPR=133.299;RPR=14;RUN=1;SAF=7;SAP=3.0103;SAR=7;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:26,10:26:977:10:392:-24.648,0,-77.401 0/1:25:21,4:21:801:4:157:-6.85258,0,-64.8883 0/0:13:13,0:13:486:0:0:0,-3.91339,-44.081 dDocent_Contig_5124 18 . T C 73.4887 . AB=0.333333;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=79;DPB=79;DPRA=1.21739;EPP=16.0391;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=2871;RO=73;RPL=0;RPP=16.0391;RPPR=161.528;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:904:0:0:0,-6.92369,-81.6664 0/0:47:44,3:44:1727:3:117:0,-3.23912,-144.757 0/1:9:6,3:6:240:3:121:-8.57072,0,-19.2662 dDocent_Contig_5125 7 . G A 573.437 . AB=0.319444;ABP=23.398;AC=2;AF=0.333333;AN=6;AO=23;CIGAR=1X;DP=110;DPB=110;DPRA=0.947368;EPP=52.9542;EPPR=185.414;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=889;QR=2879;RO=84;RPL=0;RPP=52.9542;RPPR=185.414;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:38,0:38:1334:0:0:0,-11.4391,-120.328 0/1:30:20,9:20:742:9:347:-22.7224,0,-58.2523 0/1:42:26,14:26:803:14:542:-36.94,0,-60.3842 dDocent_Contig_5126 190 . G A 150.359 . AB=0.857143;ABP=10.7656;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=22;DPB=22;DPRA=0.933333;EPP=16.0391;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=634;RO=16;RPL=6;RPP=16.0391;RPPR=37.7539;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:275:0:0:0,-2.10721,-25.1168 0/1:7:1,6:1:40:6:200:-16.2133,0,-1.88847 0/0:8:8,0:8:319:0:0:0,-2.40824,-29.0743 dDocent_Contig_5127 209 . N G 242.213 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=0;RO=0;RPL=7;RPP=18.2106;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:159:-13.6215,-1.20412,0 ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:119:-10.2972,-0.90309,0 dDocent_Contig_5129 63 . T A 116.481 . AB=0.263158;ABP=12.2676;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=59;DPB=59;DPRA=0.95;EPP=13.8677;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=2139;RO=54;RPL=5;RPP=13.8677;RPPR=120.27;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:14,5:14:556:5:199:-12.569,0,-44.6624 0/0:12:12,0:12:477:0:0:0,-3.61236,-43.2814 0/0:28:28,0:28:1106:0:0:0,-8.42884,-99.8327 dDocent_Contig_5130 7 . G A 30.9645 . AB=0.222222;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X3M2X;DP=22;DPB=22;DPRA=1.38462;EPP=7.35324;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=74;QR=675;RO=19;RPL=0;RPP=7.35324;RPPR=44.2683;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:11:10,0:10:380:0:0:0,-3.0103,-34.1549 0|1:9:7,2:7:240:2:74:-4.3165,0,-19.2218 0|0:2:2,0:2:55:0:0:0,-0.60206,-5.22391 dDocent_Contig_5132 132 . G A 63.025 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=34;DPB=34;DPRA=0.428571;EPP=9.52472;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.967742;PAO=0;PQA=0;PQR=0;PRO=0;QA=100;QR=1055;RO=31;RPL=0;RPP=9.52472;RPPR=70.3259;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:370:0:0:0,-3.31133,-33.6255 0/0:17:17,0:17:581:0:0:0,-5.11751,-52.613 0/1:6:3,3:3:104:3:100:-7.52435,0,-7.89691 dDocent_Contig_5133 36 . T G 42.6399 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=24;DPB=24;DPRA=0.823529;EPP=7.35324;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=866;RO=22;RPL=0;RPP=7.35324;RPPR=50.7827;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 0/0:15:15,0:15:586:0:0:0,-4.51545,-53.0792 0/1:7:5,2:5:199:2:80:-5.48436,0,-16.1811 dDocent_Contig_5134 117 . G C 1276.39 . AB=0;ABP=0;AC=0;AF=0;AN=6;AO=1;CIGAR=1M1D2M1X2M;DP=52;DPB=44.5714;DPRA=0.736842;EPP=5.18177;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=0;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=6;QR=0;RO=0;RPL=0;RPP=5.18177;RPPR=0;RPR=1;RUN=1;SAF=0;SAP=5.18177;SAR=1;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:25:0,0,25:0:0:0,25:0,725:-65.5246,-65.5246,-65.5246,-7.52575,-7.52575,0 0|0:13:0,0,13:0:0:0,13:0,360:-32.6711,-32.6711,-32.6711,-3.91339,-3.91339,0 0|0:14:0,1,13:0:0:1,13:6,320:-28.9657,-28.74,-28.439,-3.91339,-3.61442,0 dDocent_Contig_5135 53 . G T 38.1118 . AB=0.121212;ABP=44.1367;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=103;DPB=103;DPRA=1.73913;EPP=16.0391;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=3834;RO=97;RPL=6;RPP=16.0391;RPPR=213.643;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:913:0:0:0,-6.92369,-82.4792 0/0:47:45,2:45:1780:2:80:0,-6.55662,-152.834 0/1:33:29,4:29:1141:4:162:-5.03297,0,-93.0395 dDocent_Contig_5137 27 . A G 117.326 . AB=0.272727;ABP=7.94546;AC=2;AF=0.333334;AN=6;AO=3;CIGAR=9M1X3M;DP=37;DPB=36.6923;DPRA=0.647059;EPP=3.73412;EPPR=55.4358;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.821429;PAO=0;PQA=0;PQR=0;PRO=0;QA=98;QR=1099;RO=28;RPL=0;RPP=9.52472;RPPR=63.8115;RPR=3;RUN=1;SAF=1;SAP=3.73412;SAR=2;SRF=27;SRP=55.4358;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:9:6,3,0:6:237:3,0:120,0:-8.30463,0,-18.9944,-10.1108,-19.8975,-29.6145 0|1:11:7,1,3:7:270:1,3:41,98:-5.74677,-4.5172,-26.4299,0,-18.8379,-21.2548 0|0:17:15,0,0:15:592:0,0:0,0:0,-4.51545,-53.398,-4.51545,-53.398,-53.398 dDocent_Contig_5139 130 . A G 858.515 . AB=0.697674;ABP=17.6046;AC=2;AF=0.333333;AN=6;AO=30;CIGAR=1X;DP=52;DPB=52;DPRA=2.38889;EPP=68.1545;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1116;QR=827;RO=22;RPL=0;RPP=68.1545;RPPR=50.7827;RPR=30;RUN=1;SAF=0;SAP=68.1545;SAR=30;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:342:0:0:0,-2.70927,-31.1362 0/1:14:4,10:4:150:10:383:-30.6112,0,-9.65103 0/1:29:9,20:9:335:20:733:-57.5591,0,-21.7692 dDocent_Contig_5140 7 . G A 222.267 . AB=0.188679;ABP=47.6279;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1M1X5M1X3M;DP=53;DPB=51.4545;DPRA=0;EPP=24.725;EPPR=65.983;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=384;QR=1028;RO=29;RPL=0;RPP=24.725;RPPR=65.983;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:8,1,6:8:284:1,6:39,231:-16.555,-15.7613,-38.5798,0,-19.901,-21.2999 0|1:19:8,4,2:8:281:4,2:123,76:-6.90543,0,-21.7022,-3.0595,-16.6639,-25.3671 0|1:19:13,1,2:13:463:1,2:38,77:-2.47072,-3.24767,-40.7649,0,-34.7358,-37.2503 dDocent_Contig_5141 48 . T G 148.518 . AB=0.315789;ABP=8.61041;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=39;DPB=39;DPRA=1.9;EPP=16.0391;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=1279;RO=33;RPL=0;RPP=16.0391;RPPR=74.6689;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:382:0:0:0,-3.0103,-34.732 0/0:10:10,0:10:385:0:0:0,-3.0103,-35.0022 0/1:19:13,6:13:512:6:238:-16.0737,0,-40.7062 dDocent_Contig_5142 21 . A G 68.952 . AB=0.138889;ABP=43.7857;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=61;DPB=61;DPRA=2.88;EPP=13.8677;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.982143;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=2202;RO=56;RPL=0;RPP=13.8677;RPPR=124.613;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:31,5:31:1233:5:203:-7.81598,0,-100.405 0/0:18:18,0:18:693:0:0:0,-5.41854,-62.6936 0/0:7:7,0:7:276:0:0:0,-2.10721,-25.2067 dDocent_Contig_5144 7 . G A 316.39 . AB=0.109375;ABP=172.657;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=5M1X;DP=159;DPB=189;DPRA=2.06452;EPP=33.4109;EPPR=272.273;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.975806;PAO=0;PQA=0;PQR=0;PRO=0;QA=539;QR=4541;RO=124;RPL=0;RPP=33.4109;RPPR=272.273;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=124;SRP=272.273;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:49:39,2,7:39:1429:2,7:71,265:-10.0451,-15.9996,-132.204,0,-111.078,-114.756 0|0:79:58,14,7:58:2129:14,7:507,274:-23.9127,0,-169.802,-18.833,-151.484,-190.768 0|0:31:27,2,0:27:983:2,0:68,0:0,-2.49738,-82.4249,-8.12781,-83.027,-88.5421 dDocent_Contig_5146 14 . G C 285.795 . AB=0.27907;ABP=21.2406;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=56;DPB=56;DPRA=1.65385;EPP=29.068;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=479;QR=1735;RO=44;RPL=0;RPP=29.068;RPPR=98.5551;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:505:0:0:0,-3.91339,-45.7945 0/1:14:11,3:11:434:3:113:-6.32316,0,-35.2005 0/1:29:20,9:20:796:9:366:-24.5751,0,-63.2299 dDocent_Contig_5148 63 . C T 74.1459 . AB=0.210526;ABP=16.8392;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=31;DPB=31;DPRA=0.791667;EPP=11.6962;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=1031;RO=27;RPL=4;RPP=11.6962;RPPR=61.6401;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:7,1:7:271:1:40:-1.58744,0,-22.3454 0/1:11:8,3:8:317:3:122:-8.06116,0,-25.5839 0/0:12:12,0:12:443:0:0:0,-3.61236,-40.1985 dDocent_Contig_5149 11 . A G 41.7152 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=16;DPB=16;DPRA=1.55556;EPP=7.35324;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=554;RO=14;RPL=0;RPP=7.35324;RPPR=33.4109;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 0/0:8:8,0:8:315:0:0:0,-2.40824,-28.7139 0/1:7:5,2:5:199:2:79:-5.39042,0,-16.1808 dDocent_Contig_5150 38 . C G 1896.72 . AB=0.777778;ABP=57.2971;AC=3;AF=0.5;AN=6;AO=63;CIGAR=1X;DP=81;DPB=81;DPRA=0;EPP=139.813;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2409;QR=686;RO=18;RPL=0;RPP=139.813;RPPR=42.0968;RPR=63;RUN=1;SAF=63;SAP=139.813;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:10,12:10:370:12:468:-35.8483,0,-27.0097 0/1:45:6,39:6:241:39:1468:-118.828,0,-8.51974 0/1:14:2,12:2:75:12:473:-38.7076,0,-2.90517 dDocent_Contig_5151 53 . T C 36.2086 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=18;DPB=18;DPRA=1.27273;EPP=7.35324;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=605;RO=16;RPL=2;RPP=7.35324;RPPR=37.7539;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:5,2:5:188:2:70:-4.54012,0,-15.1765 0/0:9:9,0:9:339:0:0:0,-2.70927,-30.8633 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.40347 dDocent_Contig_5152 15 . G T 124.628 . AB=0.24;ABP=17.6895;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=41;DPB=41;DPRA=0.78125;EPP=16.0391;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=1347;RO=35;RPL=0;RPP=16.0391;RPPR=79.0118;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:8,1:8:324:1:41:-1.3853,0,-26.8199 0/1:16:11,5:11:403:5:200:-13.5629,0,-31.7898 0/0:16:16,0:16:620:0:0:0,-4.81648,-56.1326 dDocent_Contig_5153 117 . C G 469.786 . AB=0.358209;ABP=14.7103;AC=2;AF=0.333333;AN=6;AO=24;CIGAR=1X;DP=90;DPB=90;DPRA=1.45652;EPP=55.1256;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=765;QR=2220;RO=66;RPL=0;RPP=55.1256;RPPR=146.327;RPR=24;RUN=1;SAF=0;SAP=55.1256;SAR=24;SRF=0;SRP=146.327;SRR=66;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:8,18:8:254:18:573:-44.0446,0,-15.3425 0/1:41:35,6:35:1174:6:192:-5.25277,0,-93.6168 0/0:23:23,0:23:792:0:0:0,-6.92369,-71.5984 dDocent_Contig_5154 22 . T C 199.21 . AB=0.179104;ABP=62.9365;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=78;DPB=78;DPRA=3.04545;EPP=29.068;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=463;QR=2591;RO=66;RPL=0;RPP=29.068;RPPR=146.327;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:26,8:26:1002:8:302:-17.2982,0,-80.2327 0/0:11:11,0:11:427:0:0:0,-3.31133,-38.7813 0/1:33:29,4:29:1162:4:161:-4.94149,0,-94.9262 dDocent_Contig_5155 8 . T G 1340.93 . AB=0.0416667;ABP=46.8017;AC=0;AF=0;AN=6;AO=3;CIGAR=2X;DP=65;DPB=65;DPRA=0;EPP=9.52472;EPPR=44.2683;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=719;RO=19;RPL=0;RPP=9.52472;RPPR=44.2683;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:24:11,1,12:11:415:1,12:39,460:-34.4365,-34.5415,-68.2488,0,-30.7927,-30.3873 0|0:15:8,0,7:8:304:0,7:0,267:-19.8775,-22.2857,-47.2169,0,-25.3117,-23.2045 0|0:26:0,2,24:0:0:2,24:78,913:-82.0951,-75.6826,-75.0805,-7.22472,-0.423308,0 dDocent_Contig_5156 91 . C T 244.792 . AB=0.318182;ABP=15.6443;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=44;DPB=44;DPRA=0;EPP=33.4109;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=450;QR=1005;RO=30;RPL=14;RPP=33.4109;RPPR=68.1545;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:9,4:9:311:4:112:-6.4428,0,-24.412 0/1:11:6,5:6:206:5:175:-12.7824,0,-15.5652 0/1:20:15,5:15:488:5:163:-8.97075,0,-38.2092 dDocent_Contig_5157 12 . G T 108.065 . 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AB=0.571429;ABP=3.63072;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=35;DPB=35;DPRA=1.33333;EPP=20.3821;EPPR=32.0437;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=54;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.851852;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=1023;RO=27;RPL=8;RPP=20.3821;RPPR=61.6401;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=23;SRP=32.0437;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:490:0:0:0,-3.91339,-40.902 0/0:8:8,0:8:311:0:0:0,-2.40824,-26.3484 0/1:14:6,8:6:222:8:278:-21.1431,0,-14.1079 dDocent_Contig_5163 23 . A G 164.022 . 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AB=0.08;ABP=41.3151;AC=3;AF=0.5;AN=6;AO=2;CIGAR=2X2M1X1M1X3M1X;DP=51;DPB=51;DPRA=0;EPP=7.35324;EPPR=48.6112;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=819;RO=21;RPL=0;RPP=7.35324;RPPR=48.6112;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:11,9,0,2:11:431:9,0,2:355,0,73:-25.9936,0,-32.8286,-29.3049,-35.5379,-64.7587,-23.6134,-29.8464,-59.0672,-58.4651 1|0:3:0,1,0,1:0:0:1,0,1:40,0,40:-6.59413,-3.29806,-2.99703,-6.59413,-3.29806,-6.59413,-3.29806,0,-3.29806,-2.99703 0|1:25:10,13,2,0:10:388:13,2,0:507,79,0:-38.66,0,-27.9585,-35.1687,-25.3698,-66.4435,-41.6703,-31.8719,-67.0456,-73.547 dDocent_Contig_5177 13 . G A 30.2594 . 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T A 121.833 . AB=0.25;ABP=16.0391;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=29;DPB=29;DPRA=2.4;EPP=16.0391;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.73913;PAO=0;PQA=0;PQR=0;PRO=0;QA=233;QR=883;RO=23;RPL=0;RPP=16.0391;RPPR=52.9542;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:8,2:8:304:2:77:-4.29884,0,-24.7081 0/1:14:10,4:10:384:4:156:-10.2029,0,-30.7013 0/0:5:5,0:5:195:0:0:0,-1.50515,-17.9242 dDocent_Contig_5182 53 . G A 98.4098 . AB=0.208333;ABP=20.744;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=39;DPB=39;DPRA=3.2;EPP=13.8677;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=1318;RO=34;RPL=5;RPP=13.8677;RPPR=76.8404;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:222:0:0:0,-1.80618,-20.329 0/0:9:9,0:9:359:0:0:0,-2.70927,-32.6735 0/1:24:19,5:19:737:5:199:-11.0627,0,-59.4247 dDocent_Contig_5183 32 . A G 34.2472 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X1M1X;DP=24;DPB=24;DPRA=0.823529;EPP=7.35324;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=37;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=867;RO=22;RPL=0;RPP=7.35324;RPPR=50.7827;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:11:11,0:11:440:0:0:0,-3.31133,-39.956 0|0:6:6,0:6:230:0:0:0,-1.80618,-21.0642 0|1:7:5,2:5:197:2:82:-4.64631,0,-15.9978 dDocent_Contig_5184 117 . G A 842.203 . AB=0.439716;ABP=7.46105;AC=3;AF=0.5;AN=6;AO=62;CIGAR=3M1X3M;DP=141;DPB=141;DPRA=0;EPP=137.642;EPPR=120.27;GTI=0;LEN=1;MEANALT=3.66667;MQM=25.8871;MQMR=56.5556;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0.888889;PAO=0;PQA=0;PQR=0;PRO=0;QA=1527;QR=1769;RO=54;RPL=0;RPP=137.642;RPPR=120.27;RPR=62;RUN=1;SAF=0;SAP=137.642;SAR=62;SRF=0;SRP=120.27;SRR=54;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:61:25,0,1,7,25:25:801:0,1,7,25:0,23,241,634:-36.3473,-43.8731,-108.457,-42.3747,-106.959,-106.658,-33.3169,-97.9039,-96.4062,-95.7967,0,-64.6242,-63.1276,-54.0834,-57.0984 0|1:38:8,3,3,8,16:8:274:3,3,8,16:69,53,268,362:-21.4228,-19.3324,-38.8943,-20.7381,-36.7065,-40.2987,-14.1844,-30.1581,-31.5637,-32.2441,0,-15.9947,-17.4027,-10.8669,-15.6715 0|1:42:21,0,0,0,21:21:694:0,0,0,21:0,0,0,531:-30.1668,-36.4884,-90.9163,-36.4884,-90.9163,-90.9163,-36.4884,-90.9163,-90.9163,-90.9163,0,-54.7011,-54.7011,-54.7011,-48.3795 dDocent_Contig_5185 25 . T C 46.0309 . AB=0.142857;ABP=34.0313;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=42;DPB=42;DPRA=1;EPP=11.6962;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=1514;RO=38;RPL=0;RPP=11.6962;RPPR=85.5263;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:553:0:0:0,-4.21442,-50.1138 0/1:8:7,1:7:275:1:41:-1.68633,0,-22.7072 0/1:20:17,3:17:686:3:120:-5.16671,0,-56.0485 dDocent_Contig_5187 180 . T G 68.2223 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=1X;DP=19;DPB=19;DPRA=0.235294;EPP=7.35324;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=681;RO=17;RPL=2;RPP=7.35324;RPPR=39.9253;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=39.9253;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:482:0:0:0,-3.61236,-43.7321 0/0:5:5,0:5:199:0:0:0,-1.50515,-18.2886 1/1:2:0,2:0:0:2:70:-6.64451,-0.60206,0 dDocent_Contig_5188 8 . T C 116.65 . AB=0.21875;ABP=24.9965;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X;DP=32;DPB=32;DPRA=0;EPP=18.2106;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=265;QR=965;RO=25;RPL=0;RPP=18.2106;RPPR=57.2971;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:16,2:16:614:2:78:-1.98493,0,-50.1808 0/1:4:1,3:1:39:3:111:-9.1495,0,-2.69244 0/1:10:8,2:8:312:2:76:-4.20437,0,-25.4346 dDocent_Contig_5189 175 . A T 345.108 . AB=0.103448;ABP=42.621;AC=0;AF=0;AN=6;AO=3;CIGAR=1M1X3M1I2M;DP=34;DPB=36.4286;DPRA=2.9;EPP=9.52472;EPPR=39.9253;GTI=0;LEN=1;MEANALT=2.5;MQM=9;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=27;QR=670;RO=17;RPL=3;RPP=9.52472;RPPR=39.9253;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=39.9253;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:16:4,2,9:4:159:2,9:18,338:-26.7009,-27.4261,-39.9284,0,-12.8227,-10.56 0|0:13:8,1,4:8:312:1,4:9,150:-10.1283,-12.3355,-37.6906,0,-25.7097,-24.7327 0|0:5:5,0,0:5:199:0,0:0,0:0,-1.50515,-18.2887,-1.50515,-18.2887,-18.2887 dDocent_Contig_5190 17 . C T 245.242 . AB=0.234043;ABP=31.8863;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=70;DPB=70;DPRA=1.02174;EPP=26.8965;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.966102;PAO=0;PQA=0;PQR=0;PRO=0;QA=447;QR=2382;RO=59;RPL=0;RPP=26.8965;RPPR=131.127;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:929:0:0:0,-6.92369,-83.9138 0/1:19:15,4:15:609:4:162:-9.24739,0,-49.4286 0/1:28:21,7:21:844:7:285:-17.5956,0,-67.8429 dDocent_Contig_5191 10 . G A 51.6583 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=44;DPB=44;DPRA=0.2;EPP=7.35324;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=1681;RO=42;RPL=0;RPP=7.35324;RPPR=94.2121;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:597:0:0:0,-4.51545,-54.068 0/1:4:2,2:2:80:2:80:-6.38767,0,-6.38767 0/0:25:25,0:25:1004:0:0:0,-7.52575,-90.6555 dDocent_Contig_5193 21 . T C 36.7906 . AB=0.222222;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X1M1X;DP=21;DPB=21;DPRA=1.5;EPP=7.35324;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=55.5263;NS=3;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=0.894737;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=742;RO=19;RPL=0;RPP=7.35324;RPPR=44.2683;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:9:7,2:7:276:2:77:-4.59956,0,-22.5003 0|0:5:5,0:5:188:0:0:0,-1.50515,-15.5317 0|0:7:7,0:7:278:0:0:0,-2.10721,-23.0162 dDocent_Contig_5194 22 . C T 6746.28 . AB=0.0601307;ABP=2574.31;AC=0;AF=0;AN=6;AO=92;CIGAR=3X1M1X1M1X4M1X;DP=1530;DPB=1528.08;DPRA=0;EPP=37.093;EPPR=55.1256;GTI=0;LEN=1;MEANALT=81;MQM=29.3804;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0.0652174;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2429;QR=956;RO=24;RPL=0;RPP=202.786;RPPR=55.1256;RPR=92;RUN=1;SAF=65;SAP=37.093;SAR=27;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:591:2,86,31,49,34:2:79:86,31,49,34:2626,1201,1905,929:-252.274,-60.5133,-41.1262,-191.215,-5.35319,-188.385,-185.861,0,-130.701,-177.612,-186.306,-0.444663,-131.146,-125.793,-182.573 0|0:605:7,100,47,28,49:7:276:100,47,28,49:2981,1815,1040,1247:-293.468,-74.8197,-67.4267,-198.046,0,-206.607,-244.179,-46.1333,-169.359,-258.46,-209.918,-11.8729,-135.099,-181.232,-217.878 0|0:334:15,55,13,19,9:15:601:55,13,19,9:1800,507,747,253:-132.552,0,-32.9649,-110.252,-22.7062,-155.859,-107.895,-20.3492,-130.6,-151.695,-118.942,-31.3959,-141.647,-139.289,-165.753 dDocent_Contig_5195 93 . T A 47.8758 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=37;DPB=37;DPRA=0.242424;EPP=7.35324;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.971429;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=1280;RO=35;RPL=1;RPP=3.0103;RPPR=3.56868;RPR=1;RUN=1;SAF=1;SAP=3.0103;SAR=1;SRF=19;SRP=3.56868;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:769:0:0:0,-6.32163,-69.5241 0/0:12:12,0:12:435:0:0:0,-3.61236,-39.4834 0/1:4:2,2:2:76:2:76:-6.00942,0,-6.00942 dDocent_Contig_5196 16 . A G 475.338 . AB=0.205128;ABP=91.3725;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=117;DPB=117;DPRA=0;EPP=55.1256;EPPR=204.957;GTI=0;LEN=1;MEANALT=1;MQM=56.75;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.958333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=958;QR=3693;RO=93;RPL=0;RPP=55.1256;RPPR=204.957;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:33,4:33:1295:4:164:-3.99683,0,-105.682 0/1:29:19,10:19:751:10:401:-27.6809,0,-59.1809 0/1:51:41,10:41:1647:10:393:-19.5724,0,-133.105 dDocent_Contig_5197 35 . C G 39.4491 . AB=0.15;ABP=24.2907;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=50;DPB=50;DPRA=1.33333;EPP=9.52472;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=1889;RO=47;RPL=0;RPP=9.52472;RPPR=105.07;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:485:0:0:0,-3.61236,-44.0009 0/1:20:17,3:17:685:3:120:-5.16671,0,-55.9598 0/0:18:18,0:18:719:0:0:0,-5.41854,-65.032 dDocent_Contig_5198 28 . C T 1839.39 . AB=0.0804598;ABP=136.019;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=6M1X4M;DP=129;DPB=120.818;DPRA=0;EPP=18.2106;EPPR=113.755;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=277;QR=2015;RO=51;RPL=0;RPP=18.2106;RPPR=113.755;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:42:23,2,3,14:23:912:2,3,14:61,120,551:-38.4222,-40.4682,-114.94,-35.4581,-105.656,-109.636,0,-70.2202,-65.2145,-70.8862 1|0:45:1,2,4,36:1:40:2,4,36:74,157,1432:-127.218,-121.467,-124.16,-114.608,-111.851,-116.699,-9.61586,-6.86428,0,-2.07483 0|0:42:27,6,0,9:27:1063:6,0,9:230,0,365:-21.9856,-11.2449,-96.8772,-30.1134,-98.6834,-117.559,0,-68.5803,-87.4557,-84.7464 dDocent_Contig_5199 144 . C T 248.694 . AB=0.333333;ABP=12.42;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=68;DPB=68;DPRA=0.672414;EPP=31.2394;EPPR=120.27;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=423;QR=1726;RO=54;RPL=0;RPP=31.2394;RPPR=120.27;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=120.27;SRR=54;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:11,4:11:335:4:139:-8.33724,0,-25.9306 0/1:24:14,9:14:430:9:284:-18.851,0,-31.9869 0/0:29:29,0:29:961:0:0:0,-8.72987,-86.7909 dDocent_Contig_5200 10 . G A 84.1805 . AB=0.210526;ABP=16.8392;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=43;DPB=43;DPRA=1.58333;EPP=11.6962;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=1565;RO=39;RPL=0;RPP=11.6962;RPPR=87.6977;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:15,4:15:598:4:163:-9.33886,0,-48.4404 0/0:15:15,0:15:609:0:0:0,-4.51545,-55.1478 0/0:9:9,0:9:358:0:0:0,-2.70927,-32.5816 dDocent_Contig_5201 7 . C A 34901.4 . AB=0.536424;ABP=20.4108;AC=6;AF=1;AN=6;AO=810;CIGAR=1X7M;DP=1510;DPB=1510;DPRA=0;EPP=1761.9;EPPR=244.044;GTI=0;LEN=1;MEANALT=13.3333;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0.640741;PAIREDR=0.936937;PAO=0;PQA=0;PQR=0;PRO=0;QA=30730;QR=4283;RO=111;RPL=0;RPP=1761.9;RPPR=244.044;RPR=810;RUN=1;SAF=810;SAP=1761.9;SAR=0;SRF=111;SRP=244.044;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:816:57,17,313,4,407:57:2184:17,313,4,407:657,11653,147,15388:-2018.5,-1981.7,-2155.82,-1082.13,-1207.41,-1167.15,-2023.64,-2148.92,-1249.35,-2201.68,-774.288,-899.566,0,-941.51,-831.009 1|1:345:17,27,68,6,209:17:647:27,68,6,209:1040,2541,228,7936:-800.645,-720.368,-765.308,-597.709,-565.381,-630.307,-787.065,-754.737,-632.078,-838.326,-154.984,-122.656,0,-189.354,-145.137 1|1:349:37,8,64,22,194:37:1452:8,64,22,194:315,2412,842,7406:-674.704,-659.929,-776.938,-488.191,-581.696,-588.343,-616.743,-710.248,-538.511,-729.539,-78.2289,-171.735,0,-128.55,-139.249 dDocent_Contig_5202 12 . A T 59.1949 . AB=0.128571;ABP=86.8912;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X;DP=223;DPB=223;DPRA=0;EPP=37.7539;EPPR=448.162;GTI=0;LEN=1;MEANALT=1.33333;MQM=54.1875;MQMR=58.9317;NS=3;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=0.273171;PAO=0;PQA=0;PQR=0;PRO=0;QA=633;QR=8041;RO=205;RPL=0;RPP=37.7539;RPPR=448.162;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=205;SRP=448.162;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:71:68,3:68:2672:3:121:0,-10.0929,-229.342 0/1:70:61,9:61:2380:9:355:-7.14134,0,-189.117 0/0:82:76,4:76:2989:4:157:0,-9.98967,-254.174 dDocent_Contig_5203 20 . C T 57.7355 . AB=0.307692;ABP=7.18621;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=43;DPB=43;DPRA=0.866667;EPP=11.6962;EPPR=79.2345;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.846154;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=1541;RO=39;RPL=0;RPP=11.6962;RPPR=87.6977;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=38;SRP=79.2345;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:587:0:0:0,-4.51545,-53.1612 0/0:15:15,0:15:597:0:0:0,-4.51545,-54.0689 0/1:13:9,4:9:357:4:118:-6.99539,0,-28.5789 dDocent_Contig_5204 7 . C T 1287.54 . AB=0.166667;ABP=78.288;AC=0;AF=0;AN=6;AO=13;CIGAR=1X2M1X;DP=78;DPB=78;DPRA=0;EPP=31.2394;EPPR=50.7827;GTI=0;LEN=1;MEANALT=2;MQM=55.7692;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=497;QR=850;RO=22;RPL=0;RPP=31.2394;RPPR=50.7827;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:22:8,1,13:8:306:1,13:39,512:-39.7136,-38.9193,-63.7243,0,-21.9004,-21.1906 0|0:34:7,6,21:7:271:6,21:225,848:-67.8306,-52.0625,-72.5146,0,-4.40066,-15.9527 0|0:22:7,6,9:7:273:6,9:233,359:-24.9269,-7.88236,-28.5271,0,-3.29938,-19.7328 dDocent_Contig_5205 26 . C T 125.427 . AB=0.178571;ABP=53.2644;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=56;DPB=56;DPRA=0;EPP=24.725;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=355;QR=1834;RO=46;RPL=0;RPP=24.725;RPPR=102.898;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:15,5:15:588:5:190:-11.442,0,-47.2371 0/1:20:18,2:18:713:2:78:-1.3827,0,-58.4766 0/1:16:13,3:13:533:3:87:-3.29694,0,-43.4994 dDocent_Contig_5206 8 . T A 205.444 . AB=0.285714;ABP=16.9698;AC=3;AF=0.5;AN=6;AO=10;CIGAR=2X2M1X;DP=35;DPB=35;DPRA=0;EPP=24.725;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=374;QR=962;RO=25;RPL=0;RPP=24.725;RPPR=57.2971;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:7:3,4:3:117:4:157:-12.4016,0,-8.803 0|1:22:17,5:17:653:5:178:-9.74063,0,-52.4819 0|1:6:5,1:5:192:1:39:-2.09038,0,-15.8431 dDocent_Contig_5207 19 . T A 129.223 . AB=0.277778;ABP=10.7311;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X2M2X;DP=68;DPB=68;DPRA=0.692308;EPP=13.8677;EPPR=105.07;GTI=0;LEN=1;MEANALT=3;MQM=58.6;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=1822;RO=47;RPL=0;RPP=13.8677;RPPR=105.07;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:24:19,0,2,0,2:19:723:0,2,0,2:0,80,0,80:-0.87515,-6.59472,-65.885,0,-59.2935,-58.6914,-6.59472,-65.885,-59.2935,-65.885,-0.0553826,-59.3472,-52.7554,-59.3472,-58.7451 0|1:18:6,5,0,5,2:6:233:5,0,5,2:193,0,201,64:-14.069,0,-17.6771,-15.8752,-19.1823,-35.0364,-2.57055,-5.8796,-21.7343,-20.2291,-11.9187,-15.2251,-31.0755,-17.7811,-30.4734 0|0:26:22,0,0,3,0:22:866:0,0,3,0:0,0,86,0:0,-6.62266,-78.0158,-6.62266,-78.0158,-78.0158,-3.17065,-74.4454,-74.4454,-73.5424,-6.62266,-78.0158,-78.0158,-74.4454,-78.0158 dDocent_Contig_5209 137 . G A 45.2265 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=95;DPB=95;DPRA=0.253968;EPP=9.52472;EPPR=202.786;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=3032;RO=92;RPL=0;RPP=9.52472;RPPR=202.786;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=202.786;SRR=92;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:4:2,2:2:58:2:70:-5.44328,0,-4.30516 0/0:28:27,1:27:868:1:35:0,-4.93021,-74.9178 0/0:63:63,0:63:2106:0:0:0,-18.9649,-189.809 dDocent_Contig_5210 24 . C T 134.741 . AB=0.230769;ABP=19.3799;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=60;DPB=60;DPRA=3.78571;EPP=20.3821;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=328;QR=2083;RO=52;RPL=0;RPP=20.3821;RPPR=115.927;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:25,2:25:1000:2:82:0,-0.348132,-82.516 0/0:7:7,0:7:278:0:0:0,-2.10721,-25.3899 0/1:26:20,6:20:805:6:246:-14.6933,0,-64.9393 dDocent_Contig_5211 190 . A G 38.4684 . AB=0.129032;ABP=40.0654;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=33;DPB=33;DPRA=7.75;EPP=11.6962;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=1148;RO=29;RPL=4;RPP=11.6962;RPPR=65.983;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 0/1:12:10,2:10:405:2:81:-4.07337,0,-33.1981 0/1:19:17,2:17:662:2:82:-2.06011,0,-54.1812 dDocent_Contig_5212 21 . G A 58.5176 . AB=0.16;ABP=28.1125;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=54;DPB=54;DPRA=1.72414;EPP=11.6962;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=1983;RO=50;RPL=0;RPP=11.6962;RPPR=111.584;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:497:0:0:0,-3.91339,-45.0675 0/0:16:16,0:16:647:0:0:0,-4.81648,-58.5639 0/1:25:21,4:21:839:4:158:-7.07361,0,-68.2922 dDocent_Contig_5213 176 . T C 120.659 . AB=0.3125;ABP=7.89611;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=28;DPB=28;DPRA=2.66667;EPP=13.8677;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=888;RO=23;RPL=5;RPP=13.8677;RPPR=52.9542;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:187:0:0:0,-1.50515,-17.1886 0/0:7:7,0:7:260:0:0:0,-2.10721,-23.7541 0/1:16:11,5:11:441:5:197:-13.2875,0,-35.2286 dDocent_Contig_5214 7 . C A 83.9218 . AB=0.137255;ABP=61.2994;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=133;DPB=133;DPRA=1.2439;EPP=18.2106;EPPR=276.616;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=56.619;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.650794;PAO=0;PQA=0;PQR=0;PRO=0;QA=270;QR=4793;RO=126;RPL=0;RPP=18.2106;RPPR=276.616;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=126;SRP=276.616;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:44,7:44:1664:7:270:-9.313,0,-128.899 0/0:33:33,0:33:1246:0:0:0,-9.93399,-111.809 0/0:49:49,0:49:1883:0:0:0,-14.7505,-164.922 dDocent_Contig_5216 98 . N C 5109.49 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=245;CIGAR=2X;DP=255;DPB=1204.5;DPRA=0;EPP=484.182;EPPR=0;GTI=0;LEN=1;MEANALT=3;MQM=33.3102;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.726531;PAIREDR=0;PAO=1884;PQA=50700;PQR=0;PRO=0;QA=7607;QR=0;RO=0;RPL=235;RPP=451.707;RPPR=0;RPR=10;RUN=1;SAF=239;SAP=484.182;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:92:0,90:0:0:90:2711:-180.624,-27.0927,0 1|1:82:0,77:0:0:77:2413:-181.455,-23.1793,0 1|1:81:0,78:0:0:78:2483:-148.392,-23.4803,0 dDocent_Contig_5217 20 . C A 33.5983 . AB=0.181818;ABP=12.6832;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=35;DPB=35;DPRA=0.916667;EPP=7.35324;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=1315;RO=33;RPL=0;RPP=7.35324;RPPR=74.6689;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:9,2:9:356:2:80:-4.28046,0,-29.0887 0/0:13:13,0:13:518:0:0:0,-3.91339,-46.9629 0/0:11:11,0:11:441:0:0:0,-3.31133,-40.0419 dDocent_Contig_5218 28 . A G 2026.11 . AB=0.561983;ABP=7.04816;AC=3;AF=0.5;AN=6;AO=68;CIGAR=1X;DP=121;DPB=121;DPRA=0;EPP=150.67;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2687;QR=2117;RO=53;RPL=0;RPP=150.67;RPPR=118.098;RPR=68;RUN=1;SAF=68;SAP=150.67;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:3,11:3:118:11:447:-36.3717,0,-6.7883 0/1:20:10,10:10:395:10:396:-29.9755,0,-29.8875 0/1:87:40,47:40:1604:47:1844:-139.981,0,-118.405 dDocent_Contig_5219 9 . T A 103.599 . AB=0.263158;ABP=12.2676;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=31;DPB=31;DPRA=3.16667;EPP=13.8677;EPPR=57.2971;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.92;PAO=0;PQA=0;PQR=0;PRO=0;QA=189;QR=964;RO=25;RPL=0;RPP=13.8677;RPPR=57.2971;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:422:0:0:0,-3.31133,-38.3335 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 0/1:19:13,5:13:503:5:189:-11.5788,0,-39.821 dDocent_Contig_5220 19 . A C 10027.5 . AB=0.090566;ABP=388.869;AC=1;AF=0.166667;AN=6;AO=31;CIGAR=1X1M1X2M1X;DP=363;DPB=363;DPRA=0;EPP=70.3259;EPPR=55.1256;GTI=0;LEN=1;MEANALT=4;MQM=55.0645;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1220;QR=926;RO=24;RPL=0;RPP=70.3259;RPPR=55.1256;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:93:4,14,72:4:154:14,72:550,2842:-264.97,-221.225,-229.654,-32.3201,0,-23.2907 0|0:98:5,7,83:5:195:7,83:272,3257:-275.326,-254.677,-268.598,-8.94557,-2.81485,0 0|0:172:15,10,144:15:577:10,144:398,5702:-464.77,-436.626,-480.979,0,-14.695,-4.00863 dDocent_Contig_5221 7 . C T 313.178 . AB=0.258621;ABP=32.3626;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=35.5824;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=571;QR=1617;RO=43;RPL=0;RPP=35.5824;RPPR=96.3836;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:16,4:16:607:4:154:-8.21286,0,-48.9472 0/1:21:16,5:16:581:5:190:-11.1455,0,-46.2995 0/1:17:11,6:11:429:6:227:-15.6761,0,-33.8481 dDocent_Contig_5223 45 . T A 515.549 . AB=0.403846;ABP=7.18621;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X;DP=52;DPB=52;DPRA=0;EPP=48.6112;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=778;QR=1228;RO=31;RPL=0;RPP=48.6112;RPPR=70.3259;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:9,14:9:355:14:563:-44.0887,0,-25.3869 0/1:3:1,2:1:40:2:49:-3.74931,0,-3.09259 0/1:26:21,5:21:833:5:166:-7.43006,0,-67.4567 dDocent_Contig_5225 98 . N G 174.116 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=2X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=190;QR=0;RO=0;RPL=6;RPP=16.0391;RPPR=0;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:6:0,6:0:0:6:190:-17.4113,-1.80618,0 dDocent_Contig_5226 159 . T A 83.4451 . AB=0.428571;ABP=3.32051;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=23;DPB=23;DPRA=0.875;EPP=9.52472;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=793;RO=20;RPL=3;RPP=9.52472;RPPR=46.4397;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:4,3:4:162:3:122:-9.26528,0,-12.8597 0/0:8:8,0:8:314:0:0:0,-2.40824,-28.6237 0/0:8:8,0:8:317:0:0:0,-2.40824,-28.8964 dDocent_Contig_5227 16 . G T 134.479 . AB=0.142857;ABP=80.5629;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=90;DPB=90;DPRA=1.75;EPP=24.725;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=56.6;MQMR=59.9625;NS=3;NUMALT=1;ODDS=0;PAIRED=0.4;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=402;QR=3184;RO=80;RPL=0;RPP=24.725;RPPR=176.728;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:18,5:18:720:5:199:-11.2619,0,-58.2032 0/0:20:20,0:20:796:0:0:0,-6.0206,-71.9536 0/1:47:42,5:42:1668:5:203:-4.50465,0,-136.196 dDocent_Contig_5229 7 . C T 920.647 . AB=0.0740741;ABP=45.5551;AC=0;AF=0;AN=6;AO=2;CIGAR=1X2M1X1M1X;DP=67;DPB=67;DPRA=0;EPP=7.35324;EPPR=70.3259;GTI=0;LEN=1;MEANALT=2;MQM=31;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=1189;RO=31;RPL=0;RPP=7.35324;RPPR=70.3259;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:27:12,2,13:12:459:2,13:76,516:-37.6413,-36.4318,-73.4931,0,-32.9122,-33.8203 0|0:13:6,0,7:6:224:0,7:0,265:-20.2911,-22.0973,-40.4345,0,-18.7126,-16.6054 0|0:27:13,0,13:13:506:0,13:0,513:-37.849,-41.7624,-83.3471,0,-41.5671,-37.6537 dDocent_Contig_5230 8 . T A 1908.84 . AB=0.581197;ABP=9.71031;AC=3;AF=0.5;AN=6;AO=68;CIGAR=1X;DP=117;DPB=117;DPRA=0;EPP=150.67;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2543;QR=1879;RO=49;RPL=0;RPP=150.67;RPPR=109.412;RPR=68;RUN=1;SAF=68;SAP=150.67;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:8,9:8:304:9:341:-25.9285,0,-22.6016 0/1:59:13,46:13:500:46:1730:-138.201,0,-27.5874 0/1:41:28,13:28:1075:13:472:-30.471,0,-84.7132 dDocent_Contig_5231 14 . T C 121.283 . AB=0.5;ABP=3.0103;AC=2;AF=0.333334;AN=6;AO=3;CIGAR=1X4M;DP=24;DPB=24;DPRA=0.666667;EPP=9.52472;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.666667;PAIREDR=0.947368;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=741;RO=19;RPL=0;RPP=9.52472;RPPR=44.2683;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:6:3,0,3:3:117:0,3:0,123:-9.65861,-10.5617,-20.1693,0,-10.0071,-9.10403 0|1:9:7,2,0:7:272:2,0:79,0:-4.78836,0,-22.1369,-6.89557,-22.739,-29.2414 0|0:9:9,0,0:9:352:0,0:0,0:0,-2.70927,-32.0411,-2.70927,-32.0411,-32.0411 dDocent_Contig_5232 30 . G A 131.789 . AB=0.384615;ABP=4.51363;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=42;DPB=42;DPRA=2.125;EPP=16.0391;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=237;QR=1408;RO=36;RPL=0;RPP=16.0391;RPPR=81.1833;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:8,5:8:320:5:196:-14.0997,0,-25.2528 0/0:8:8,0:8:303:0:0:0,-2.40824,-27.6228 0/0:21:20,1:20:785:1:41:0,-2.22706,-66.8689 dDocent_Contig_5233 174 . G A 187.367 . AB=0.176471;ABP=18.4661;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X;DP=42;DPB=42;DPRA=0.5;EPP=18.2106;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=267;QR=1370;RO=35;RPL=7;RPP=18.2106;RPPR=79.0118;RPR=0;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=79.0118;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:819:0:0:0,-6.32163,-74.023 0/1:17:14,3:14:551:3:122:-6.25498,0,-44.8139 1/1:4:0,4:0:0:4:145:-13.4022,-1.20412,0 dDocent_Contig_5234 9 . T C 251.639 . AB=0.196721;ABP=51.7438;AC=3;AF=0.5;AN=6;AO=12;CIGAR=2X4M;DP=61;DPB=61;DPRA=0;EPP=29.068;EPPR=100.727;GTI=0;LEN=1;MEANALT=1.33333;MQM=50.6667;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.416667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=459;QR=1749;RO=45;RPL=0;RPP=29.068;RPPR=100.727;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:13,4,2:13:512:4,2:154,79:-7.11519,0,-40.928,-4.74527,-35.8641,-46.3056 0|1:13:9,0,4:9:335:0,4:0,144:-9.35379,-12.0631,-39.4921,0,-27.7917,-26.5876 0|1:29:23,0,6:23:902:0,6:0,236:-12.4116,-19.3353,-93.5199,0,-74.5705,-72.7643 dDocent_Contig_5235 123 . T C 41.2499 . AB=0.173913;ABP=24.253;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=29;DPB=29;DPRA=1.91667;EPP=11.6962;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=890;RO=25;RPL=0;RPP=11.6962;RPPR=57.2971;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:213:0:0:0,-1.80618,-19.5163 0/1:8:7,1:7:241:1:35:-1.09039,0,-19.6174 0/1:15:12,3:12:436:3:105:-5.28071,0,-35.0674 dDocent_Contig_5236 15 . T C 183.537 . AB=0.225;ABP=29.2851;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=99;DPB=99;DPRA=1.35593;EPP=22.5536;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.933333;PAO=0;PQA=0;PQR=0;PRO=0;QA=344;QR=3492;RO=90;RPL=0;RPP=22.5536;RPPR=198.443;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:31,9:31:1205:9:344:-19.2745,0,-96.695 0/0:26:26,0:26:1004:0:0:0,-7.82678,-90.6519 0/0:33:33,0:33:1283:0:0:0,-9.93399,-115.736 dDocent_Contig_5238 10 . A G 443.66 . AB=0.444444;ABP=3.9754;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=58;DPB=58;DPRA=0.818182;EPP=37.7539;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=631;QR=1620;RO=42;RPL=0;RPP=37.7539;RPPR=94.2121;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:8,11:8:312:11:430:-33.3318,0,-22.7231 0/1:17:12,5:12:465:5:201:-13.353,0,-37.0788 0/0:22:22,0:22:843:0:0:0,-6.62266,-76.1824 dDocent_Contig_5239 133 . T C 59.1485 . AB=0.272727;ABP=7.94546;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=19;DPB=19;DPRA=2.75;EPP=9.52472;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=112;QR=565;RO=16;RPL=0;RPP=9.52472;RPPR=37.7539;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2,0:2:79:0:0:0,-0.60206,-7.49724 0/1:11:8,3:8:248:3:112:-7.13516,0,-19.305 0/0:6:6,0:6:238:0:0:0,-1.80618,-21.7939 dDocent_Contig_5241 10 . A G 842.395 . AB=0.127907;ABP=520.124;AC=2;AF=0.333333;AN=6;AO=55;CIGAR=1X3M;DP=430;DPB=430;DPRA=0;EPP=122.441;EPPR=448.162;GTI=0;LEN=1;MEANALT=12.3333;MQM=43.5091;MQMR=56.3171;NS=3;NUMALT=6;ODDS=1.11022e-16;PAIRED=0.0545455;PAIREDR=0.302439;PAO=0;PQA=0;PQR=0;PRO=0;QA=1826;QR=8031;RO=205;RPL=0;RPP=122.441;RPPR=448.162;RPR=55;RUN=1;SAF=55;SAP=122.441;SAR=0;SRF=205;SRP=448.162;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:169:83,10,0,5,24,27,7:83:3252:10,0,5,24,27,7:366,0,196,931,885,278:-51.5109,-47.2376,-297.726,-76.4964,-300.736,-329.994,-60.8238,-285.065,-314.322,-312.817,0,-224.249,-253.507,-237.836,-246.282,-8.57519,-232.808,-262.064,-246.393,-185.579,-253.937,-53.6887,-277.931,-307.188,-291.517,-230.702,-239.259,-305.081 0|1:132:50,7,10,8,6,17,9:50:1940:7,10,8,6,17,9:276,390,284,239,529,360:-24.9048,-17.3229,-171.552,-14.2018,-147.904,-167.525,-17.6644,-151.368,-148.244,-171.591,-20.2717,-153.977,-150.853,-154.316,-174.801,0,-133.699,-130.577,-134.04,-136.648,-151.212,-10.7871,-144.493,-141.369,-144.833,-147.442,-127.165,-164.415 0|1:129:72,9,1,3,9,11,4:72:2839:9,1,3,9,11,4:361,40,108,360,412,162:-11.5405,-3.85048,-226.652,-30.9366,-227.082,-256.139,-25.2114,-221.357,-248.436,-249.812,-3.55102,-199.704,-226.783,-221.058,-226.352,0,-196.151,-223.23,-217.505,-195.852,-222.197,-19.8711,-216.02,-243.099,-237.374,-215.721,-212.168,-244.174 dDocent_Contig_5243 108 . G C 66.4386 . AB=0.235294;ABP=13.3567;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=30;DPB=30;DPRA=0.653846;EPP=11.6962;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.846154;PAO=0;PQA=0;PQR=0;PRO=0;QA=148;QR=1033;RO=26;RPL=0;RPP=11.6962;RPPR=59.4686;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:10,3:10:398:3:107:-6.06753,0,-32.2665 0/0:13:13,0:13:516:0:0:0,-3.91339,-46.7864 0/1:4:3,1:3:119:1:41:-2.89045,0,-9.89089 dDocent_Contig_5244 15 . C G 40.5573 . AB=0.25;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=25;DPB=25;DPRA=0.941176;EPP=7.35324;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=907;RO=23;RPL=0;RPP=7.35324;RPPR=52.9542;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:281:0:0:0,-2.10721,-25.6626 0/0:10:10,0:10:397:0:0:0,-3.0103,-36.0878 0/1:8:6,2:6:229:2:81:-5.27749,0,-18.5632 dDocent_Contig_5246 107 . N T 1906.45 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=70;CIGAR=1X;DP=70;DPB=70;DPRA=0;EPP=138.138;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=34.5143;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2347;QR=0;RO=0;RPL=0;RPP=155.013;RPPR=0;RPR=70;RUN=1;SAF=2;SAP=138.138;SAR=68;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:37:0,37:0:0:37:1227:-99.2046,-11.1381,0 1/1:21:0,21:0:0:21:701:-59.8908,-6.32163,0 1/1:12:0,12:0:0:12:419:-30.9477,-3.61236,0 dDocent_Contig_5247 35 . T C 964.249 . AB=0.672131;ABP=18.709;AC=2;AF=0.333333;AN=6;AO=41;CIGAR=2M2X;DP=61;DPB=61;DPRA=0;EPP=83.5666;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1.33333;MQM=49.1951;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1345;QR=698;RO=18;RPL=41;RPP=92.0407;RPPR=42.0968;RPR=0;RUN=1;SAF=1;SAP=83.5666;SAR=40;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:27:7,20,0:7:273:20,0:646,0:-50.225,0,-16.8099,-52.3322,-22.8305,-74.7904 0|1:22:3,19,0:3:111:19,0:632,0:-45.6932,0,-3.72946,-46.5963,-9.44903,-55.6845 0|0:12:8,2,2:8:314:2,2:67,80:-4.21438,-1.24121,-26.4547,0,-20.4653,-25.2657 dDocent_Contig_5248 128 . T G 79.6083 . AB=0.2;ABP=26.4622;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=56;DPB=56;DPRA=0.576923;EPP=16.0391;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.833333;PAIREDR=0.94;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=1869;RO=50;RPL=0;RPP=16.0391;RPPR=111.584;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=111.584;SRR=50;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:17,2:17:632:2:63:-0.263868,0,-51.4867 0/1:11:7,4:7:247:4:135:-9.17217,0,-19.2572 0/0:26:26,0:26:990:0:0:0,-7.82678,-89.4058 dDocent_Contig_5249 5 . T G 99.8425 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=9I1X3M1X;DP=3;DPB=8.4;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.29832;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=107;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,3:0:0:3:107:-9.98208,-0.90309,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_5250 75 . A T 31.0261 . AB=0.294118;ABP=9.26925;AC=1;AF=0.166667;AN=6;AO=41;CIGAR=1M1D2X;DP=228;DPB=217.5;DPRA=0;EPP=92.0407;EPPR=291.816;GTI=0;LEN=1;MEANALT=4.33333;MQM=11.8293;MQMR=7;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1374;QR=4051;RO=133;RPL=41;RPP=92.0407;RPPR=291.816;RPR=0;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=133;SRP=291.816;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:106:69,15,15:69:2089:15,15:500,105:0,-15.8377,-33.8932,-19.2913,-36.9256,-37.3337 0|0:105:56,21,18:56:1699:21,18:704,154:0,-0.524068,-12.5245,-12.4446,-14.4208,-25.322 0|1:17:8,5,2:8:263:5,2:170,14:-3.98634,0,-1.13437,-6.21733,-2.44489,-8.20328 dDocent_Contig_5251 28 . C T 124.137 . AB=0.15;ABP=66.8516;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=88;DPB=88;DPRA=1.07143;EPP=22.5536;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=356;QR=3132;RO=79;RPL=0;RPP=22.5536;RPPR=174.557;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:1110:0:0:0,-8.42884,-100.189 0/1:32:27,5:27:1060:5:202:-8.92891,0,-86.0629 0/1:28:24,4:24:962:4:154:-5.80353,0,-78.4505 dDocent_Contig_5252 108 . T A 60.4396 . AB=0.6;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=30;DPB=30;DPRA=0.4;EPP=9.52472;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=94;QR=907;RO=27;RPL=0;RPP=9.52472;RPPR=61.6401;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:328:0:0:0,-3.0103,-29.8395 0/0:15:15,0:15:511:0:0:0,-4.51545,-46.3152 0/1:5:2,3:2:68:3:94:-7.26576,0,-4.95278 dDocent_Contig_5253 149 . T A 553.628 . AB=0.314815;ABP=19.0953;AC=4;AF=0.666667;AN=6;AO=20;CIGAR=1X;DP=57;DPB=57;DPRA=0;EPP=46.4397;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=809;QR=1469;RO=37;RPL=0;RPP=46.4397;RPPR=83.3548;RPR=20;RUN=1;SAF=0;SAP=46.4397;SAR=20;SRF=0;SRP=83.3548;SRR=37;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:22,11:22:876:11:442:-30.2005,0,-69.2178 0/1:21:15,6:15:593:6:245:-16.1078,0,-47.3841 1/1:3:0,3:0:0:3:122:-11.3725,-0.90309,0 dDocent_Contig_5254 26 . G A 370.153 . AB=0.541667;ABP=3.37221;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=40;DPB=40;DPRA=3;EPP=31.2394;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.923077;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=498;QR=1057;RO=27;RPL=0;RPP=31.2394;RPPR=61.6401;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:11,13:11:438:13:498:-37.936,0,-32.5493 0/0:10:10,0:10:406:0:0:0,-3.0103,-36.9006 0/0:6:6,0:6:213:0:0:0,-1.80618,-19.5071 dDocent_Contig_5255 138 . G T 30.1774 . AB=0.222222;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=32;DPB=32;DPRA=0.782609;EPP=7.35324;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=1027;RO=30;RPL=0;RPP=7.35324;RPPR=68.1545;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:245:2:70:-3.93813,0,-19.682 0/0:9:9,0:9:305:0:0:0,-2.70927,-27.7792 0/0:14:14,0:14:477:0:0:0,-4.21442,-43.2555 dDocent_Contig_5256 164 . G A 141.875 . AB=0.241379;ABP=19.8579;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=31;DPB=31;DPRA=7.25;EPP=18.2106;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=272;QR=894;RO=24;RPL=7;RPP=18.2106;RPPR=55.1256;RPR=0;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2,0:2:75:0:0:0,-0.60206,-7.11959 0/1:15:12,3:12:461:3:116:-6.30209,0,-37.3246 0/1:14:10,4:10:358:4:156:-10.2027,0,-28.3324 dDocent_Contig_5258 20 . T C 232.898 . AB=0.206897;ABP=46.29;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=29.068;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.916667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=481;QR=1705;RO=46;RPL=0;RPP=29.068;RPPR=102.898;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:18,6:18:664:6:237:-14.4782,0,-52.8653 0/1:18:16,2:16:583:2:81:-2.26719,0,-47.3791 0/1:16:12,4:12:458:4:163:-10.2419,0,-36.7527 dDocent_Contig_5260 22 . G A 55.2562 . AB=0.148148;ABP=32.0437;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=84;DPB=84;DPRA=0.947368;EPP=11.6962;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.3375;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.425;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=3139;RO=80;RPL=0;RPP=11.6962;RPPR=176.728;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=70;SRP=100.727;SRR=10;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:34,0:34:1342:0:0:0,-10.235,-114.19 0/1:27:23,4:23:908:4:161:-6.74746,0,-72.2247 0/0:23:23,0:23:889:0:0:0,-6.92369,-80.3033 dDocent_Contig_5261 165 . C G 1026.13 . AB=0.596154;ABP=7.18621;AC=4;AF=0.666667;AN=6;AO=35;CIGAR=1X;DP=56;DPB=56;DPRA=0;EPP=62.6327;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1329;QR=825;RO=21;RPL=33;RPP=62.6327;RPPR=48.6112;RPR=2;RUN=1;SAF=0;SAP=79.0118;SAR=35;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:9,11:9:352:11:422:-32.3097,0,-26.0198 0/1:32:12,20:12:473:20:779:-60.7916,0,-33.2881 1/1:4:0,4:0:0:4:128:-11.8302,-1.20412,0 dDocent_Contig_5262 16 . C A 42.0625 . AB=0.2;ABP=14.7363;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=94;DPB=94;DPRA=7.33333;EPP=13.8677;EPPR=171.092;GTI=0;LEN=1;MEANALT=1;MQM=48;MQMR=59.9438;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.921348;PAO=0;PQA=0;PQR=0;PRO=0;QA=187;QR=3492;RO=89;RPL=0;RPP=13.8677;RPPR=196.271;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=86;SRP=171.092;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:73:71,2:71:2782:2:79:0,-14.5846,-243.128 0/0:6:6,0:6:233:0:0:0,-1.80618,-21.3274 0/1:15:12,3:12:477:3:108:-5.42799,0,-38.7666 dDocent_Contig_5265 71 . G A 361.052 . AB=0.296296;ABP=22.4731;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=54;DPB=54;DPRA=0;EPP=37.7539;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=611;QR=1437;RO=38;RPL=16;RPP=37.7539;RPPR=85.5263;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:19,9:19:701:9:346:-23.0658,0,-54.9767 0/1:9:7,2:7:278:2:74:-4.31559,0,-22.6813 0/1:17:12,5:12:458:5:191:-12.4403,0,-36.4485 dDocent_Contig_5266 15 . C T 41.5034 . AB=0.222222;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=29;DPB=29;DPRA=0.9;EPP=7.35324;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=1096;RO=27;RPL=0;RPP=7.35324;RPPR=61.6401;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:281:2:82:-5.07041,0,-22.9529 0/0:3:3,0:3:123:0:0:0,-0.90309,-11.4648 0/0:17:17,0:17:692:0:0:0,-5.11751,-62.6079 dDocent_Contig_5267 7 . C T 10993.5 . AB=0.282974;ABP=685.405;AC=3;AF=0.5;AN=6;AO=472;CIGAR=1X;DP=1668;DPB=1668;DPRA=0;EPP=1027.95;EPPR=2548.09;GTI=0;LEN=1;MEANALT=2.33333;MQM=59.072;MQMR=58.6717;NS=3;NUMALT=1;ODDS=0;PAIRED=0.911017;PAIREDR=0.955387;PAO=0;PQA=0;PQR=0;PRO=0;QA=17941;QR=45072;RO=1188;RPL=0;RPP=1027.95;RPPR=2582.72;RPR=472;RUN=1;SAF=472;SAP=1027.95;SAR=0;SRF=1184;SRP=2548.09;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:482:335,141:335:12670:141:5357:-335.557,0,-987.698 0/1:405:302,102:302:11330:102:3868:-223.234,0,-868.215 0/1:781:551,229:551:21072:229:8716:-544.273,0,-1647.4 dDocent_Contig_5269 12 . A G 838.061 . AB=0.529412;ABP=3.3935;AC=4;AF=0.666667;AN=6;AO=27;CIGAR=1X1M;DP=51;DPB=51;DPRA=0;EPP=53.2759;EPPR=33.4109;GTI=0;LEN=1;MEANALT=2;MQM=59.7407;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.925926;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1083;QR=559;RO=14;RPL=0;RPP=61.6401;RPPR=33.4109;RPR=27;RUN=1;SAF=26;SAP=53.2759;SAR=1;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:9:5,0,3:5:198:0,3:0,119:-8.3913,-9.89645,-26.2138,0,-16.4254,-15.5223 1|1:14:2,3,9:2:79:3,9:109,357:-31.1772,-22.8859,-28.4831,-2.36962,0,-6.17352 0|1:28:7,6,15:7:282:6,15:231,607:-47.9536,-31.1031,-52.5395,0,-4.29761,-18.7373 dDocent_Contig_5270 33 . C T 1610.48 . AB=0.593407;ABP=9.90651;AC=3;AF=0.5;AN=6;AO=54;CIGAR=1X;DP=91;DPB=91;DPRA=0;EPP=120.27;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2124;QR=1471;RO=37;RPL=0;RPP=120.27;RPPR=83.3548;RPR=54;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:14,39:14:556:39:1545:-123.343,0,-34.4288 0/1:7:1,6:1:40:6:223:-18.3095,0,-1.88847 0/1:31:22,9:22:875:9:356:-23.0682,0,-69.7267 dDocent_Contig_5271 186 . C A 47.3284 . AB=0.166667;ABP=20.3821;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=51;DPB=51;DPRA=1.09091;EPP=9.52472;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1858;RO=48;RPL=3;RPP=9.52472;RPPR=107.241;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=107.241;SRR=48;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3,0:3:118:0:0:0,-0.90309,-11.0027 0/1:18:15,3:15:561:3:122:-5.95395,0,-45.3952 0/0:30:30,0:30:1179:0:0:0,-9.0309,-106.38 dDocent_Contig_5272 107 . N A 735.672 . AB=0.185185;ABP=26.2531;AC=6;AF=1;AN=6;AO=5;CIGAR=1X3I4X6M1X;DP=62;DPB=77.5833;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=6;MQM=57;MQMR=0;NS=3;NUMALT=6;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=17;PRO=0.5;QA=189;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:20:0,7,0,6,6,0,0:0:0:7,0,6,6,0,0:267,0,216,122,0,0:-30.7694,-16.0685,-13.9613,-30.7694,-16.0685,-30.7694,-14.7319,0,-14.7319,-12.9258,-23.2466,-8.58165,-23.2466,-7.21591,-21.4404,-30.7694,-16.0685,-30.7694,-14.7319,-23.2466,-30.7694,-30.7694,-16.0685,-30.7694,-14.7319,-23.2466,-30.7694,-30.7694 1|1:15:0,6,0,2,4,2,0:0:0:6,0,2,4,2,0:229,0,58,55,18,0:-16.2275,-4.1059,-2.29972,-16.2275,-4.1059,-16.2275,-12.1412,0,-12.1412,-11.5392,-13.4585,-1.34254,-13.4585,-9.37496,-12.2544,-15.7212,-3.60601,-15.7212,-11.637,-12.9685,-15.1192,-16.2275,-4.1059,-16.2275,-12.1412,-13.4585,-15.7212,-16.2275 1|1:27:0,7,2,4,8,0,5:0:0:7,2,4,8,0,5:270,75,114,141,0,189:-30.2629,-15.5333,-13.4261,-28.9867,-14.2598,-28.3846,-22.2857,-7.55152,-21.0111,-21.0816,-22.095,-7.37875,-20.8279,-14.1255,-19.6868,-30.2629,-15.5333,-28.9867,-22.2857,-22.095,-30.2629,-14.7488,0,-13.4719,-6.76325,-6.57515,-14.7488,-13.2436 dDocent_Contig_5274 94 . A G 48.9047 . AB=0.272727;ABP=7.94546;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=37;DPB=37;DPRA=0.846154;EPP=9.52472;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=101;QR=1120;RO=34;RPL=3;RPP=9.52472;RPPR=76.8404;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:211:0:0:0,-2.10721,-19.2852 0/1:11:8,3:8:272:3:101:-6.11227,0,-21.5001 0/0:19:19,0:19:637:0:0:0,-5.71957,-57.6452 dDocent_Contig_5277 19 . G A 135.572 . AB=0.555556;ABP=3.25157;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=63;DPB=63;DPRA=0.333333;EPP=13.8677;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=187;QR=2222;RO=58;RPL=0;RPP=13.8677;RPPR=128.956;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:4,5:4:159:5:187:-14.478,0,-11.9827 0/0:20:20,0:20:777:0:0:0,-6.0206,-70.2494 0/0:34:34,0:34:1286:0:0:0,-10.235,-116.003 dDocent_Contig_5278 115 . T C 36.7989 . AB=0.25;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=19;DPB=19;DPRA=1.45455;EPP=7.35324;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=619;RO=17;RPL=0;RPP=7.35324;RPPR=39.9253;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=39.9253;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:291:0:0:0,-2.40824,-26.5396 0/1:8:6,2:6:211:2:77:-4.9009,0,-16.9253 0/0:3:3,0:3:117:0:0:0,-0.90309,-10.9104 dDocent_Contig_5280 19 . C A 1063.51 . AB=0.190311;ABP=243.758;AC=3;AF=0.5;AN=6;AO=55;CIGAR=2X;DP=289;DPB=289;DPRA=0;EPP=122.441;EPPR=502.449;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=59.7304;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.904348;PAO=0;PQA=0;PQR=0;PRO=0;QA=2174;QR=9025;RO=230;RPL=0;RPP=122.441;RPPR=502.449;RPR=55;RUN=1;SAF=55;SAP=122.441;SAR=0;SRF=230;SRP=502.449;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:135:104,31:104:4110:31:1226:-69.9816,0,-329.139 0|1:71:56,12:56:2202:12:475:-22.2321,0,-177.238 0|1:83:70,12:70:2713:12:473:-17.8544,0,-219.237 dDocent_Contig_5281 28 . G T 325.333 . AB=0.521739;ABP=3.10471;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=51;DPB=51;DPRA=0.410714;EPP=29.068;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=456;QR=1515;RO=39;RPL=0;RPP=29.068;RPPR=87.6977;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:1086:0:0:0,-8.42884,-98.0171 0/1:14:5,9:5:199:9:334:-26.1889,0,-14.0736 0/1:9:6,3:6:230:3:122:-8.66322,0,-18.3533 dDocent_Contig_5282 8 . T A 25768.5 . AB=0.496939;ABP=3.09007;AC=6;AF=1;AN=6;AO=487;CIGAR=1X3M;DP=980;DPB=980;DPRA=0;EPP=1060.52;EPPR=42.0968;GTI=0;LEN=1;MEANALT=6.33333;MQM=54.8686;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.88501;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=17949;QR=694;RO=18;RPL=0;RPP=1060.52;RPPR=42.0968;RPR=487;RUN=1;SAF=487;SAP=1060.52;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:340:10,144,174:10:386:144,174:5528,6415:-884.785,-486.813,-475.166,-369.256,0,-348.58 1|1:422:8,185,200:8:308:185,200:7075,7403:-1094.3,-572.487,-542.086,-498.917,0,-464 1|1:218:0,93,113:0:0:93,113:3609,4131:-601.482,-330.894,-302.899,-270.59,0,-236.573 dDocent_Contig_5283 13 . C G 481.148 . AB=0.0943396;ABP=78.766;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X2M1X;DP=72;DPB=72;DPRA=0;EPP=13.8677;EPPR=107.241;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=1852;RO=48;RPL=0;RPP=13.8677;RPPR=107.241;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:19:11,0,8,0:11:415:0,8,0:0,319,0:-23.3563,-26.6676,-60.6645,0,-34.3862,-31.978,-26.6676,-60.6645,-34.3862,-60.6645 0|1:19:16,2,1,0:16:614:2,1,0:78,41,0:-1.58139,0,-49.7666,-3.00718,-46.983,-53.0938,-6.39787,-50.3686,-53.3948,-56.7802 0|0:34:21,3,0,10:21:823:3,0,10:120,0,402:-26.8079,-23.2448,-90.0064,-33.1296,-90.9095,-100.795,0,-57.7782,-67.6644,-64.6541 dDocent_Contig_5284 14 . T G 617.533 . AB=0.40678;ABP=7.46366;AC=2;AF=0.333333;AN=6;AO=24;CIGAR=1X;DP=64;DPB=64;DPRA=5.9;EPP=55.1256;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=889;QR=1562;RO=40;RPL=0;RPP=55.1256;RPPR=89.8692;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:19,22:19:748:22:830:-62.6652,0,-55.3014 0/0:5:5,0:5:192:0:0:0,-1.50515,-17.6494 0/1:18:16,2:16:622:2:59:-0.181273,0,-50.8954 dDocent_Contig_5285 92 . A T 194.191 . AB=0.333333;ABP=9.52472;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=48;DPB=48;DPRA=0.642857;EPP=22.5536;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=324;QR=1333;RO=39;RPL=9;RPP=22.5536;RPPR=87.6977;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:730:0:0:0,-6.32163,-66.0214 0/1:6:3,3:3:92:3:108:-8.26899,0,-6.77755 0/1:21:15,6:15:511:6:216:-13.4689,0,-39.9918 dDocent_Contig_5287 38 . T C 32.8499 . AB=0.222222;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=16;DPB=16;DPRA=2.57143;EPP=7.35324;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=544;RO=14;RPL=0;RPP=7.35324;RPPR=33.4109;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2,0:2:79:0:0:0,-0.60206,-7.49763 0/1:9:7,2:7:265:2:76:-4.50499,0,-21.5007 0/0:5:5,0:5:200:0:0:0,-1.50515,-18.3795 dDocent_Contig_5288 10 . A G 61.3881 . AB=0.114754;ABP=81.6461;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=98;DPB=98;DPRA=0;EPP=24.725;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=0.875;PAO=0;PQA=0;PQR=0;PRO=0;QA=392;QR=3460;RO=88;RPL=0;RPP=24.725;RPPR=194.1;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:33,3:33:1288:3:119:-0.257935,0,-105.356 0/1:25:21,4:21:837:4:161:-7.34915,0,-68.1183 0/0:37:34,3:34:1335:3:112:0,-0.693203,-109.968 dDocent_Contig_5289 89 . C T 182.876 . AB=0.181818;ABP=70.7208;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X3M;DP=77;DPB=77;DPRA=0;EPP=33.4109;EPPR=133.299;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=484;QR=2023;RO=60;RPL=14;RPP=33.4109;RPPR=133.299;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:50:37,3,10:37:1243:3,10:105,342:-16.6132,-19.2063,-118.994,0,-92.1386,-97.6726 0|1:11:9,0,2:9:307:0,2:0,70:-3.33607,-6.04534,-30.9497,0,-25.2527,-24.6506 0|1:16:14,0,2:14:473:0,2:0,72:-2.02024,-6.23466,-44.5575,0,-38.6799,-38.0779 dDocent_Contig_5290 29 . A G 57.3183 . AB=0.135135;ABP=45.7942;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=41;DPB=41;DPRA=4.625;EPP=13.8677;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=1423;RO=36;RPL=0;RPP=13.8677;RPPR=81.1833;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:13,3:13:516:3:122:-6.55601,0,-41.9705 0/1:21:19,2:19:744:2:80:-1.27016,0,-60.9581 0/0:4:4,0:4:163:0:0:0,-1.20412,-15.0584 dDocent_Contig_5292 7 . C T 56.0508 . AB=0.106796;ABP=141.331;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=126;DPB=126;DPRA=0;EPP=29.068;EPPR=250.558;GTI=0;LEN=1;MEANALT=1;MQM=55.5833;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=464;QR=4281;RO=114;RPL=0;RPP=29.068;RPPR=250.558;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:38,5:38:1434:5:195:-4.95625,0,-116.397 0/0:23:22,1:22:822:1:39:0,-3.03227,-70.408 0/1:60:54,6:54:2025:6:230:-2.96363,0,-164.422 dDocent_Contig_5294 16 . A G 53.2615 . AB=0.128205;ABP=49.8362;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=69;DPB=69;DPRA=2.6;EPP=13.8677;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=2553;RO=64;RPL=0;RPP=13.8677;RPPR=141.985;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3,0:3:117:0:0:0,-0.90309,-10.9093 0/1:39:34,5:34:1366:5:199:-6.54727,0,-111.46 0/0:27:27,0:27:1070:0:0:0,-8.12781,-96.5895 dDocent_Contig_5295 122 . C A 63.0747 . AB=0.294118;ABP=9.26925;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=25;DPB=25;DPRA=1.0625;EPP=13.8677;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=145;QR=678;RO=20;RPL=0;RPP=13.8677;RPPR=46.4397;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:276:0:0:0,-2.40824,-25.1757 0/1:8:7,1:7:233:1:35:-1.09039,0,-18.8881 0/1:9:5,4:5:169:4:110:-7.46328,0,-12.8338 dDocent_Contig_5296 62 . A C 175.07 . 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T C 163.118 . AB=0.28;ABP=13.5202;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=32;DPB=32;DPRA=1.78571;EPP=18.2106;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.714286;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=1001;RO=25;RPL=0;RPP=18.2106;RPPR=57.2971;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:278:0:0:0,-2.10721,-25.3884 0/1:17:14,3:14:561:3:122:-6.25498,0,-45.7163 0/1:8:4,4:4:162:4:160:-12.3756,0,-12.5587 dDocent_Contig_5317 12 . A G 49.4162 . 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AB=0.22619;ABP=57.7107;AC=1;AF=0.166667;AN=6;AO=19;CIGAR=1X3M2X;DP=84;DPB=84;DPRA=0;EPP=44.2683;EPPR=68.1545;GTI=0;LEN=1;MEANALT=3.33333;MQM=55.5789;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.263158;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=720;QR=1162;RO=30;RPL=0;RPP=44.2683;RPPR=68.1545;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:39:10,1,9,19:10:386:1,9,19:39,347,753:-58.9757,-58.7802,-90.1784,-33.6341,-62.1258,-62.6223,0,-28.4954,-3.34704,-25.982 0|0:22:7,1,5,8:7:270:1,5,8:39,182,319:-24.1819,-23.0826,-44.9559,-11.463,-30.4277,-32.1285,0,-18.9773,-7.35505,-19.7762 0|1:23:13,2,5,3:13:506:2,5,3:78,191,120:-11.7156,-9.21691,-50.202,0,-35.1701,-40.0766,-5.7395,-40.9176,-31.6953,-46.4265 dDocent_Contig_5319 9 . C T 457.799 . AB=0.352941;ABP=12.5903;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=79;DPB=79;DPRA=0.910714;EPP=42.0968;EPPR=57.1547;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=50.2623;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.819672;PAO=0;PQA=0;PQR=0;PRO=0;QA=697;QR=2293;RO=61;RPL=0;RPP=42.0968;RPPR=135.47;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=50;SRP=57.1547;SRR=11;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:1054:0:0:0,-8.42884,-84.7801 0/1:24:14,10:14:507:10:387:-27.9628,0,-26.0438 0/1:27:19,8:19:732:8:310:-20.1359,0,-52.834 dDocent_Contig_5320 151 . T C 122.243 . AB=0.230769;ABP=19.3799;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X1M1X;DP=33;DPB=33;DPRA=1.85714;EPP=16.0391;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=1049;RO=27;RPL=0;RPP=16.0391;RPPR=61.6401;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:7:7,0:7:272:0:0:0,-2.10721,-24.8455 0|1:17:13,4:13:500:4:162:-9.84945,0,-40.2282 0|1:9:7,2:7:277:2:78:-4.69351,0,-22.5905 dDocent_Contig_5321 12 . T C 35.4765 . AB=0.2;ABP=10.8276;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=38;DPB=38;DPRA=0.714286;EPP=7.35324;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=1437;RO=36;RPL=0;RPP=7.35324;RPPR=81.1833;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:475:0:0:0,-3.61236,-43.0993 0/1:10:8,2:8:315:2:82:-4.76938,0,-25.7025 0/0:16:16,0:16:647:0:0:0,-4.81648,-58.563 dDocent_Contig_5322 15 . G T 574.605 . AB=0.466667;ABP=3.44459;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X;DP=45;DPB=45;DPRA=0;EPP=48.6112;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=818;QR=945;RO=24;RPL=0;RPP=48.6112;RPPR=55.1256;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:13,14:13:507:14:539:-40.7189,0,-37.8417 0/1:8:3,5:3:121:5:200:-15.9713,0,-8.87196 0/1:10:8,2:8:317:2:79:-4.48694,0,-25.8843 dDocent_Contig_5323 8 . T C 1525.9 . AB=0.305085;ABP=22.4799;AC=4;AF=0.666667;AN=6;AO=18;CIGAR=1X3M;DP=92;DPB=92;DPRA=0;EPP=42.0968;EPPR=52.9542;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=689;QR=864;RO=23;RPL=0;RPP=42.0968;RPPR=52.9542;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:33:8,10,15,0:8:299:10,15,0:388,580,0:-52.642,-23.1699,-44.6387,-7.41034,0,-27.3722,-55.0502,-47.649,-31.8876,-79.5305 0|1:26:8,14,3,1:8:298:14,3,1:548,109,38:-42.2615,0,-20.1878,-35.7722,-15.5024,-59.2569,-41.9244,-21.657,-57.4141,-66.0118 1|0:33:7,10,0,16:7:267:10,0,16:389,0,648:-61.4033,-31.5485,-50.4353,-63.5105,-53.4456,-85.4111,-10.0714,0,-31.9725,-27.156 dDocent_Contig_5324 20 . G T 48.3966 . AB=0.176471;ABP=18.4661;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X2M1X;DP=48;DPB=48;DPRA=2.92857;EPP=13.8677;EPPR=92.0407;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.95122;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=1589;RO=41;RPL=0;RPP=13.8677;RPPR=92.0407;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:24:21,2:21:809:2:77:0,-0.0157498,-65.8097 0|0:7:7,0:7:273:0:0:0,-2.10721,-24.9368 0|1:17:13,3:13:507:3:121:-6.05591,0,-40.7521 dDocent_Contig_5325 8 . T C 168.636 . AB=0.242424;ABP=22.0271;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=92;DPB=92;DPRA=1.11864;EPP=20.3821;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=304;QR=3164;RO=84;RPL=0;RPP=20.3821;RPPR=185.414;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:25,8:25:939:8:304:-17.7844,0,-74.8911 0/0:37:37,0:37:1398:0:0:0,-11.1381,-126.104 0/0:22:22,0:22:827:0:0:0,-6.62266,-74.75 dDocent_Contig_5326 28 . C T 46.6354 . AB=0.176471;ABP=18.4661;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=53;DPB=53;DPRA=0.944444;EPP=9.52472;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.88;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=1983;RO=50;RPL=0;RPP=9.52472;RPPR=111.584;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:722:0:0:0,-5.41854,-65.3042 0/0:18:18,0:18:700:0:0:0,-5.41854,-63.3251 0/1:17:14,3:14:561:3:118:-5.88538,0,-45.7151 dDocent_Contig_5327 30 . C T 358.642 . AB=0.666667;ABP=7.35324;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=24;DPB=24;DPRA=1.5;EPP=29.068;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.25;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=475;QR=468;RO=12;RPL=0;RPP=29.068;RPPR=29.068;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:5,5:5:187:5:198:-15.1868,0,-14.1774 0/1:8:1,7:1:39:7:277:-22.8921,0,-1.48832 0/0:6:6,0:6:242:0:0:0,-1.80618,-22.1569 dDocent_Contig_5328 24 . G C 2039.11 . AB=0.691489;ABP=32.9489;AC=3;AF=0.5;AN=6;AO=65;CIGAR=1X;DP=94;DPB=94;DPRA=0;EPP=144.156;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2611;QR=1148;RO=29;RPL=0;RPP=144.156;RPPR=65.983;RPR=65;RUN=1;SAF=65;SAP=144.156;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:7,30:7:268:30:1208:-97.8557,0,-13.3426 0/1:44:13,31:13:517:31:1240:-98.6273,0,-33.6313 0/1:13:9,4:9:363:4:163:-11.145,0,-29.1213 dDocent_Contig_5329 78 . G C 173.654 . AB=0.363636;ABP=6.56362;AC=1;AF=0.25;AN=4;AO=8;CIGAR=1X;DP=29;DPB=29;DPRA=3.14286;EPP=20.3821;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.904762;PAO=0;PQA=0;PQR=0;PRO=0;QA=275;QR=694;RO=21;RPL=8;RPP=20.3821;RPPR=48.6112;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:14,8:14:453:8:275:-18.4622,0,-34.4595 0/0:7:7,0:7:241:0:0:0,-2.10721,-22.0264 ./.:.:.:.:.:.:.:. dDocent_Contig_5330 7 . C T 13733.6 . AB=0.0515021;ABP=817.191;AC=0;AF=0;AN=6;AO=28;CIGAR=2X4M;DP=648;DPB=648;DPRA=0;EPP=63.8115;EPPR=204.957;GTI=0;LEN=1;MEANALT=6.66667;MQM=45.1786;MQMR=59.7742;NS=3;NUMALT=3;ODDS=5.55112e-17;PAIRED=0.535714;PAIREDR=0.967742;PAO=0;PQA=0;PQR=0;PRO=0;QA=915;QR=3592;RO=93;RPL=0;RPP=63.8115;RPPR=204.957;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:215:44,10,17,140:44:1691:10,17,140:391,554,5002:-384.47,-367.101,-502.897,-354.894,-463.085,-488.582,0,-108.209,-96.0141,-96.6796 0|0:182:13,11,4,151:13:501:11,4,151:419,118,5398:-430.391,-399.932,-437.753,-425.432,-432.193,-465.36,-4.31153,-11.0772,-36.5946,0 0|0:251:36,3,7,194:36:1400:3,7,194:114,243,7107:-560.813,-562.301,-676.451,-552.486,-658.19,-665.431,0,-105.721,-95.9099,-56.6701 dDocent_Contig_5331 16 . C T 8632.92 . AB=0.0547046;ABP=790.105;AC=0;AF=0;AN=6;AO=25;CIGAR=2X2M1X;DP=457;DPB=457;DPRA=0;EPP=57.2971;EPPR=278.787;GTI=0;LEN=1;MEANALT=4.66667;MQM=60;MQMR=57.1811;NS=3;NUMALT=2;ODDS=5.55112e-17;PAIRED=0.88;PAIREDR=0.370079;PAO=0;PQA=0;PQR=0;PRO=0;QA=968;QR=4959;RO=127;RPL=0;RPP=57.2971;RPPR=278.787;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=127;SRP=278.787;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:152:39,104,7:39:1537:104,7:3996,267:-316.269,0,-93.2937,-306.106,-102.699,-428.597 0|0:143:35,86,12:35:1359:86,12:3312,466:-261.356,0,-85.5163,-233.604,-73.1167,-341.398 0|0:162:53,97,6:53:2063:97,6:3720,235:-289.384,0,-140.277,-286.014,-150.152,-453.644 dDocent_Contig_5332 171 . G A 397.892 . AB=0.518519;ABP=3.09072;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=35.5824;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=591;QR=1198;RO=31;RPL=15;RPP=35.5824;RPPR=70.3259;RPR=0;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:18,1:18:691:1:41:0,-1.625,-58.4139 0/1:10:2,8:2:82:8:311:-25.3414,0,-4.76938 0/1:17:11,6:11:425:6:239:-16.7664,0,-33.4812 dDocent_Contig_5333 8 . T G 478.413 . AB=0.107143;ABP=40.5458;AC=0;AF=0;AN=6;AO=3;CIGAR=2X3M1X1M1X1M;DP=56;DPB=56;DPRA=0;EPP=9.52472;EPPR=48.6112;GTI=0;LEN=1;MEANALT=6;MQM=57;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=806;RO=21;RPL=0;RPP=9.52472;RPPR=48.6112;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:21:9,2,9,0,0,0:9:349:2,9,0,0,0:77,347,0,0,0:-25.7865,-22.1734,-50.2452,0,-22.3538,-25.9666,-28.4958,-50.8473,-28.6758,-57.1695,-28.4958,-50.8473,-28.6758,-57.1695,-57.1695,-28.4958,-50.8473,-28.6758,-57.1695,-57.1695,-57.1695 0|0:7:2,2,0,2,0,0:2:72:2,0,2,0,0:70,0,80,0,0:-5.96892,-0.896526,-6.1511,-6.57098,-6.75316,-12.4383,0,-0.184826,-5.86945,-5.26739,-6.57098,-6.75316,-12.4383,-5.86945,-12.4383,-6.57098,-6.75316,-12.4383,-5.86945,-12.4383,-12.4383 0|0:28:10,7,2,0,3,4:10:385:7,2,0,3,4:276,78,0,118,160:-19.7021,0,-29.5024,-16.3004,-25.1973,-47.3066,-22.7124,-31.6096,-47.9086,-54.3206,-13.0149,-21.9117,-38.2112,-44.6233,-43.7202,-9.52875,-18.4257,-34.7259,-41.1381,-31.4404,-39.934 dDocent_Contig_5334 107 . N C 122.997 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=133;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:133:-12.2986,-1.20412,0 dDocent_Contig_5335 7 . C T 146.222 . AB=0.142857;ABP=103.829;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=205;DPB=205;DPRA=1.59649;EPP=31.2394;EPPR=409.121;GTI=0;LEN=1;MEANALT=1;MQM=50.7692;MQMR=59.6597;NS=3;NUMALT=1;ODDS=0;PAIRED=0.230769;PAIREDR=0.842932;PAO=0;PQA=0;PQR=0;PRO=0;QA=493;QR=7206;RO=191;RPL=0;RPP=31.2394;RPPR=417.762;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=190;SRP=409.121;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:91:78,13:78:2934:13:493:-15.5431,0,-235.302 0/0:55:54,0:54:2031:0:0:0,-16.2556,-182.663 0/0:59:59,0:59:2241:0:0:0,-17.7608,-201.904 dDocent_Contig_5336 10 . C T 228.347 . 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AB=0.0888889;ABP=69.0713;AC=0;AF=0;AN=6;AO=4;CIGAR=1X1M1X5M;DP=150;DPB=150;DPRA=0;EPP=11.6962;EPPR=31.2394;GTI=0;LEN=1;MEANALT=6;MQM=60;MQMR=60;NS=3;NUMALT=7;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=512;RO=13;RPL=0;RPP=11.6962;RPPR=31.2394;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:45:7,0,5,5,4,9,1,14:7:276:0,5,5,4,9,1,14:0,188,194,161,350,38,568:-50.7937,-52.9009,-75.6088,-37.5017,-60.2091,-58.7039,-36.9623,-59.67,-44.2708,-58.1649,-39.6306,-62.3387,-46.9391,-46.3999,-61.1346,-24.1413,-46.8488,-31.45,-30.9105,-33.5786,-44.1395,-49.7848,-72.4926,-57.093,-56.5539,-59.2225,-43.7327,-72.1916,-6.05184,-28.7612,-13.3617,-12.8219,-15.4899,0,-25.645,-24.5468 0|0:41:0,7,2,0,0,19,4,8:0:0:7,2,0,0,19,4,8:270,81,0,0,721,157,325:-85.9069,-63.7355,-61.6283,-79.227,-57.0554,-78.6249,-85.9069,-63.7355,-79.227,-85.9069,-85.9069,-63.7355,-79.227,-85.9069,-85.9069,-26.811,-4.64406,-20.131,-26.811,-26.811,-21.0914,-72.994,-50.8225,-66.3139,-72.994,-72.994,-13.8994,-71.7899,-59.0971,-36.9247,-52.4166,-59.0971,-59.0971,0,-46.1834,-56.6888 0|0:64:6,4,0,0,0,25,7,22:6:236:4,0,0,0,25,7,22:159,0,0,0,982,264,843:-128.707,-117.422,-135.631,-130.514,-136.835,-149.927,-130.514,-136.835,-149.927,-149.927,-130.514,-136.835,-149.927,-149.927,-149.927,-49.7454,-56.0672,-69.1597,-69.1597,-69.1597,-61.6339,-108.88,-115.202,-128.294,-128.294,-128.294,-47.5268,-126.187,-61.3541,-67.6756,-80.7674,-80.7674,-80.7674,0,-59.1355,-74.1447 dDocent_Contig_5340 15 . 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AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=9X5I2X;DP=3;DPB=4.36364;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=57;MQMR=0;NS=1;NUMALT=1;ODDS=5.29832;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,3:0:0:3:116:-10.7961,-0.90309,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_5342 19 . G A 928.384 . AB=0.0952381;ABP=32.8939;AC=0;AF=0;AN=6;AO=2;CIGAR=1X2M1X2M1X;DP=83;DPB=83;DPRA=0;EPP=7.35324;EPPR=64.083;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.9375;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1257;RO=32;RPL=0;RPP=7.35324;RPPR=72.4974;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=31;SRP=64.083;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:41:13,14,0,14:13:510:14,0,14:533,0,537:-41.9015,-2.12508,-39.8573,-45.8149,-44.0717,-87.7606,-1.73718,0,-43.6853,-39.4708 0|0:21:13,2,2,4:13:514:2,2,4:77,81,134:-6.90179,-4.48611,-46.2092,-4.12273,-40.1296,-45.8503,0,-35.979,-35.6196,-41.096 0|0:21:6,0,0,15:6:233:0,0,15:0,0,597:-47.7481,-49.5542,-68.6949,-49.5542,-68.6949,-68.6949,0,-19.5313,-19.5313,-15.0159 dDocent_Contig_5343 7 . C T 1110.09 . 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G A 2798.42 . AB=0.222028;ABP=386.905;AC=3;AF=0.5;AN=6;AO=127;CIGAR=1X;DP=572;DPB=572;DPRA=0;EPP=278.787;EPPR=932.421;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=59.7523;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.99537;PAO=0;PQA=0;PQR=0;PRO=0;QA=5026;QR=17117;RO=432;RPL=0;RPP=278.787;RPPR=941.086;RPR=127;RUN=1;SAF=127;SAP=278.787;SAR=0;SRF=431;SRP=932.421;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:262:215,44:215:8482:44:1732:-77.7298,0,-684.563 0/1:138:88,46:88:3474:46:1812:-122.568,0,-266.485 0/1:172:129,37:129:5161:37:1482:-83.261,0,-413.988 dDocent_Contig_5345 66 . C A 34.5374 . AB=0.181818;ABP=12.6832;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=41;DPB=41;DPRA=0.733333;EPP=7.35324;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1549;RO=39;RPL=2;RPP=7.35324;RPPR=87.6977;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:9,2:9:345:2:81:-4.3744,0,-28.0914 0/0:16:16,0:16:645:0:0:0,-4.81648,-58.3844 0/0:14:14,0:14:559:0:0:0,-4.21442,-50.6502 dDocent_Contig_5346 12 . C T 38.2908 . AB=0.142857;ABP=26.2761;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=64;DPB=64;DPRA=0.976744;EPP=9.52472;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=2426;RO=61;RPL=0;RPP=9.52472;RPPR=135.47;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:600:0:0:0,-4.51545,-54.3383 0/0:28:28,0:28:1105:0:0:0,-8.42884,-99.7395 0/1:21:18,3:18:721:3:122:-5.05086,0,-58.8913 dDocent_Contig_5347 16 . A C 640.876 . AB=0.08;ABP=41.3151;AC=0;AF=0;AN=6;AO=2;CIGAR=1X2M1X;DP=71;DPB=71;DPRA=1.19048;EPP=7.35324;EPPR=102.898;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=1776;RO=46;RPL=0;RPP=7.35324;RPPR=102.898;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:25:6,2,17:6:238:2,17:80,655:-51.9565,-47.171,-66.1632,0,-12.9979,-14.4713 0|0:25:19,0,6:19:729:0,6:0,240:-14.4499,-20.1695,-79.9873,0,-60.2134,-58.4073 0|0:21:21,0,0:21:809:0,0:0,0:0,-6.32163,-73.1299,-6.32163,-73.1299,-73.1299 dDocent_Contig_5348 12 . A T 409.649 . AB=0.375;ABP=4.09604;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X3M1X1M1X4M;DP=69;DPB=69;DPRA=0;EPP=9.52472;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=28.6667;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=86;QR=1601;RO=41;RPL=0;RPP=9.52472;RPPR=92.0407;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:33:22,0,1,8,2:22:850:0,1,8,2:0,40,304,78:-18.294,-24.9166,-94.7249,-21.6199,-91.4293,-91.1283,0,-69.8003,-66.5047,-67.3921,-18.5042,-88.3136,-85.018,-63.3891,-87.7116 0|1:8:5,3,0,0,0:5:199:3,0,0,0:86,0,0,0:-4.77667,0,-15.8807,-6.28182,-16.7838,-22.7561,-6.28182,-16.7838,-22.7561,-22.7561,-6.28182,-16.7838,-22.7561,-22.7561,-22.7561 0|0:28:14,0,6,8,0:14:552:0,6,8,0:0,234,314,0:-21.6109,-25.8253,-71.2429,-6.59283,-52.0101,-50.2039,0,-45.4191,-26.1869,-43.0109,-25.8253,-71.2429,-52.0101,-45.4191,-71.2429 dDocent_Contig_5349 20 . A G 250.01 . AB=0.37037;ABP=6.95112;AC=2;AF=0.5;AN=4;AO=10;CIGAR=1X;DP=27;DPB=27;DPRA=0;EPP=24.725;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=387;QR=678;RO=17;RPL=0;RPP=24.725;RPPR=39.9253;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:5,1:5:199:1:36:-1.79209,0,-16.4819 0/1:21:12,9:12:479:9:351:-25.6239,0,-37.1392 ./.:.:.:.:.:.:.:. dDocent_Contig_5350 9 . C T 1632.07 . AB=0.611111;ABP=12.6613;AC=3;AF=0.5;AN=6;AO=55;CIGAR=1M1I2M2X3M1D4M;DP=90;DPB=90;DPRA=0;EPP=122.441;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1.66667;MQM=59.8545;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2139;QR=1184;RO=31;RPL=0;RPP=122.441;RPPR=70.3259;RPR=55;RUN=1;SAF=55;SAP=122.441;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:28:14,3,11:14:541:3,11:116,419:-30.1506,-24.8358,-68.3685,0,-34.9045,-41.1212 0|1:16:12,0,4:12:460:0,4:0,157:-9.68081,-13.2932,-51.0389,0,-38.1353,-36.9312 0|1:46:5,0,40:5:183:0,40:0,1563:-127.088,-128.594,-143.544,0,-15.0165,-2.97525 dDocent_Contig_5351 22 . A C 6116.62 . AB=0.768421;ABP=181.368;AC=3;AF=0.5;AN=6;AO=219;CIGAR=2X;DP=285;DPB=285;DPRA=0;EPP=44.9029;EPPR=100.727;GTI=0;LEN=1;MEANALT=3.66667;MQM=57.5708;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.711111;PAO=0;PQA=0;PQR=0;PRO=0;QA=7851;QR=1763;RO=45;RPL=0;RPP=478.563;RPPR=100.727;RPR=219;RUN=1;SAF=77;SAP=44.9029;SAR=142;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:95:19,0,73:19:737:0,73:0,2618:-200.943,-206.663,-267.216,0,-60.5667,-38.5915 0|1:81:10,0,68:10:396:0,68:0,2405:-188.386,-191.397,-223.996,0,-32.5988,-12.1288 0|1:109:16,11,78:16:630:11,78:375,2828:-226.049,-200.442,-248.96,0,-21.4359,-28.3633 dDocent_Contig_5352 31 . C T 195.009 . AB=0.290323;ABP=14.8483;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=42;DPB=42;DPRA=1.40909;EPP=22.5536;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=338;QR=1275;RO=32;RPL=0;RPP=22.5536;RPPR=72.4974;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:8,6:8:324:6:221:-16.027,0,-25.315 0/0:11:10,0:10:403:0:0:0,-3.0103,-36.2568 0/1:17:14,3:14:548:3:117:-5.7927,0,-44.5388 dDocent_Contig_5354 170 . T A 39.6175 . AB=0.25;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=36;DPB=36;DPRA=0.571429;EPP=7.35324;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=1329;RO=34;RPL=2;RPP=7.35324;RPPR=76.8404;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=76.8404;SRR=34;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:532:0:0:0,-4.21442,-48.212 0/1:8:6,2:6:225:2:80:-5.18355,0,-18.1918 0/0:14:14,0:14:572:0:0:0,-4.21442,-51.8216 dDocent_Contig_5355 75 . T C 204.063 . AB=0.222222;ABP=9.04217;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X;DP=24;DPB=24;DPRA=0.7;EPP=18.2106;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=259;QR=480;RO=17;RPL=7;RPP=18.2106;RPPR=39.9253;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:208:2:75:-4.41107,0,-16.3043 1/1:5:0,5:0:0:5:184:-16.9157,-1.50515,0 0/0:10:10,0:10:272:0:0:0,-3.0103,-24.7476 dDocent_Contig_5356 46 . A G 38.5008 . AB=0.2;ABP=10.8276;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=30;DPB=30;DPRA=3.25;EPP=9.52472;EPPR=32.0437;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.851852;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=1074;RO=27;RPL=0;RPP=9.52472;RPPR=32.0437;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:8,2:8:317:2:82:-4.76938,0,-25.8849 0/0:16:15,1:15:594:1:41:0,-0.721913,-49.7041 0/0:4:4,0:4:163:0:0:0,-1.20412,-15.0584 dDocent_Contig_5357 140 . A C 101.791 . AB=0.416667;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=29;DPB=29;DPRA=1.41176;EPP=13.8677;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=57;MQMR=58.1667;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.958333;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=776;RO=24;RPL=0;RPP=13.8677;RPPR=55.1256;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:7,5:7:236:5:160:-11.0999,0,-17.9579 0/0:10:10,0:10:317:0:0:0,-3.0103,-28.8376 0/0:7:7,0:7:223:0:0:0,-2.10721,-20.2264 dDocent_Contig_5358 8 . T C 116.145 . AB=0.189189;ABP=34.0565;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X1M;DP=53;DPB=59;DPRA=1.15625;EPP=18.2106;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1.5;MQM=59;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.857143;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=268;QR=1673;RO=44;RPL=0;RPP=18.2106;RPPR=98.5551;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:15,0,4:15:559:0,4:0,152:-8.33019,-12.8456,-58.5985,0,-46.131,-44.9269 0|0:16:16,0,0:16:616:0,0:0,0:0,-4.81648,-55.7802,-4.81648,-55.7802,-55.7802 0|1:18:13,2,3:13:498:2,3:78,116:-5.60297,-3.10331,-43.3699,0,-34.4528,-39.9623 dDocent_Contig_5359 9 . C A 1561.8 . AB=0.386555;ABP=16.3128;AC=2;AF=0.333333;AN=6;AO=46;CIGAR=1X1M1X;DP=119;DPB=119;DPRA=0;EPP=102.898;EPPR=100.727;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.913043;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1786;QR=1760;RO=45;RPL=0;RPP=102.898;RPPR=100.727;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:27:3,17,7:3:120:17,7:654,271:-65.1471,-12.3608,-17.1323,-43.7907,0,-51.571 0|1:35:11,18,6:11:425:18,6:699,240:-54.1159,0,-29.4779,-37.655,-15.1222,-70.7532 0|0:57:31,11,15:31:1215:11,15:433,606:-40.6336,-14.3493,-110.943,0,-64.2912,-95.3968 dDocent_Contig_5361 30 . C T 132.059 . AB=0.454545;ABP=3.20771;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=73;DPB=73;DPRA=0.354839;EPP=13.8677;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=2702;RO=68;RPL=0;RPP=13.8677;RPPR=150.67;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:35:35,0:35:1395:0:0:0,-10.536,-125.807 0/0:27:27,0:27:1063:0:0:0,-8.12781,-95.9629 0/1:11:6,5:6:244:5:193:-14.4277,0,-19.0275 dDocent_Contig_5363 37 . C T 603.825 . AB=0.477273;ABP=3.20771;AC=2;AF=0.333333;AN=6;AO=22;CIGAR=1X;DP=63;DPB=63;DPRA=0;EPP=50.7827;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=876;QR=1582;RO=41;RPL=0;RPP=50.7827;RPPR=92.0407;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:13,3:13:486:3:118:-6.18572,0,-39.2607 0/0:19:18,1:18:698:1:40:0,-1.72389,-59.1499 0/1:28:10,18:10:398:18:718:-56.5154,0,-27.749 dDocent_Contig_5365 106 . N T 179.066 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=2X;DP=7;DPB=7;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=0.166667;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:7:0,6:0:0:6:199:-17.9063,-1.80618,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_5366 13 . G T 77.6596 . AB=0.428571;ABP=3.32051;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=44;DPB=44;DPRA=0.378378;EPP=9.52472;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=1624;RO=41;RPL=0;RPP=9.52472;RPPR=92.0407;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1067:0:0:0,-8.12781,-96.3201 0/0:10:10,0:10:397:0:0:0,-3.0103,-36.087 0/1:7:4,3:4:160:3:119:-8.9878,0,-12.6762 dDocent_Contig_5367 38 . T G 523.144 . AB=0.475;ABP=3.22745;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=1X;DP=57;DPB=57;DPRA=0;EPP=46.4397;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=759;QR=1449;RO=37;RPL=0;RPP=46.4397;RPPR=83.3548;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:6,10:6:230:10:387:-30.3639,0,-16.2486 0/0:17:16,1:16:617:1:26:0,-2.51768,-53.2563 0/1:24:15,9:15:602:9:346:-24.2693,0,-47.294 dDocent_Contig_5368 11 . A T 166.632 . AB=0.318182;ABP=9.32731;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=30;DPB=30;DPRA=1.375;EPP=18.2106;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=276;QR=913;RO=23;RPL=0;RPP=18.2106;RPPR=52.9542;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:323:0:0:0,-2.40824,-29.4392 0/1:6:3,3:3:116:3:121:-9.47402,0,-9.01081 0/1:16:12,4:12:474:4:155:-9.50788,0,-38.1925 dDocent_Contig_5369 59 . T C 76.1746 . AB=0.15625;ABP=35.8538;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=76;DPB=76;DPRA=0.810345;EPP=16.0391;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=2736;RO=70;RPL=6;RPP=16.0391;RPPR=155.013;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:29,0:29:1111:0:0:0,-8.72987,-100.271 0/0:15:14,1:14:567:1:40:0,-0.519771,-47.3768 0/1:32:27,5:27:1058:5:201:-8.83756,0,-85.8735 dDocent_Contig_5370 10 . A G 2284.66 . AB=0.0784314;ABP=239.19;AC=0;AF=0;AN=6;AO=12;CIGAR=1X2M1X;DP=153;DPB=153;DPRA=0;EPP=29.068;EPPR=94.2121;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0.333333;PAIREDR=0.690476;PAO=0;PQA=0;PQR=0;PRO=0;QA=421;QR=1600;RO=42;RPL=0;RPP=29.068;RPPR=94.2121;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:59:16,6,4,28,5:16:601:6,4,28,5:226,143,1042,187:-80.4694,-66.7654,-114.194,-73.6284,-104.342,-121.658,0,-30.7154,-37.5793,-40.8071,-69.9725,-100.687,-107.549,-33.9227,-117.702 0|0:43:15,1,5,20,2:15:577:1,5,20,2:39,184,738,74:-55.8353,-57.1442,-104.221,-45.3072,-89.4793,-91.1804,0,-44.1749,-32.3407,-41.3606,-54.2971,-98.4689,-86.6322,-41.3286,-101.073 0|0:51:11,1,3,32,4:11:422:1,3,32,4:39,94,1210,150:-95.878,-95.9831,-130.322,-91.6412,-123.074,-125.377,0,-31.4484,-27.1131,-25.0223,-86.9026,-118.337,-113.994,-22.3677,-120.339 dDocent_Contig_5371 7 . C A 425.342 . AB=0.321429;ABP=18.5208;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X;DP=56;DPB=56;DPRA=0;EPP=42.0968;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.944444;PAIREDR=0.921053;PAO=0;PQA=0;PQR=0;PRO=0;QA=689;QR=1419;RO=38;RPL=0;RPP=42.0968;RPPR=85.5263;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:19,6:19:702:6:233:-13.8143,0,-55.9781 0/1:10:4,6:4:142:6:223:-17.4181,0,-10.1173 0/1:21:15,6:15:575:6:233:-15.0185,0,-45.7704 dDocent_Contig_5372 42 . C T 374.148 . AB=0.242424;ABP=41.044;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X;DP=152;DPB=152;DPRA=1.53488;EPP=3.55317;EPPR=240.659;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.125;PAIREDR=0.897059;PAO=0;PQA=0;PQR=0;PRO=0;QA=643;QR=5429;RO=136;RPL=0;RPP=37.7539;RPPR=298.331;RPR=16;RUN=1;SAF=9;SAP=3.55317;SAR=7;SRF=129;SRP=240.659;SRR=7;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:66:50,16:50:1985:16:643:-38.3356,0,-158.979 0/0:63:63,0:63:2510:0:0:0,-18.9649,-226.047 0/0:23:23,0:23:934:0:0:0,-6.92369,-84.3616 dDocent_Contig_5373 50 . T A 61.5288 . AB=0.166667;ABP=26.1727;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=53;DPB=53;DPRA=1.65517;EPP=11.6962;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=1946;RO=49;RPL=4;RPP=11.6962;RPPR=109.412;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:915:0:0:0,-6.92369,-82.6564 0/0:6:6,0:6:240:0:0:0,-1.80618,-21.9745 0/1:24:20,4:20:791:4:158:-7.37464,0,-64.2788 dDocent_Contig_5374 7 . C T 110.101 . AB=0.342105;ABP=11.239;AC=1;AF=0.166667;AN=6;AO=29;CIGAR=1X;DP=154;DPB=154;DPRA=0;EPP=65.983;EPPR=272.273;GTI=0;LEN=1;MEANALT=1.33333;MQM=20.6552;MQMR=33.5081;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0;PAIREDR=0.209677;PAO=0;PQA=0;PQR=0;PRO=0;QA=1103;QR=4735;RO=124;RPL=0;RPP=65.983;RPPR=272.273;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=124;SRP=272.273;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:70:59,11:59:2243:11:414:0,-1.36302,-136.895 0/0:46:41,5:41:1562:5:191:0,-2.92378,-94.7526 0/1:38:24,13:24:930:13:498:-12.2317,0,-35.1164 dDocent_Contig_5375 46 . A G 274.516 . AB=0.210526;ABP=58.3257;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X;DP=199;DPB=199;DPRA=1.23577;EPP=37.7539;EPPR=400.39;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=566;QR=7104;RO=183;RPL=0;RPP=37.7539;RPPR=400.39;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=183;SRP=400.39;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:76:60,16:60:2341:16:566:-28.3724,0,-187.998 0/0:50:50,0:50:1901:0:0:0,-15.0515,-171.305 0/0:73:73,0:73:2862:0:0:0,-21.9752,-257.705 dDocent_Contig_5376 9 . C T 79.8608 . AB=0.235294;ABP=13.3567;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=95;DPB=95;DPRA=1.56522;EPP=18.2106;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=266;QR=3385;RO=88;RPL=0;RPP=18.2106;RPPR=194.1;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:55:52,3:52:2013:3:111:0,-6.20316,-171.05 0/0:23:23,0:23:867:0:0:0,-6.92369,-78.3469 0/1:17:13,4:13:505:4:155:-9.20793,0,-40.6816 dDocent_Contig_5377 77 . G T 627.631 . AB=0.0886076;ABP=119.143;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=2X;DP=104;DPB=104;DPRA=0;EPP=18.2106;EPPR=150.67;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.985294;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=2407;RO=68;RPL=7;RPP=18.2106;RPPR=150.67;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:25:18,0,7:18:640:0,7:0,237:-14.1343,-19.5529,-71.7182,0,-52.5085,-50.4013 0|0:27:7,2,18:7:254:2,18:70,649:-50.864,-47.2767,-67.4162,0,-15.0582,-15.3323 0|1:52:43,5,4:43:1513:5,4:174,142:-1.20077,0,-121.661,-2.57172,-111.595,-124.54 dDocent_Contig_5379 10 . T G 38.6474 . AB=0.148936;ABP=53.3238;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=57;DPB=57;DPRA=0;EPP=20.3821;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=32.5;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.25;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=313;QR=1948;RO=49;RPL=0;RPP=20.3821;RPPR=109.412;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:9,1:9:366:1:41:0,-0.327221,-30.6221 0/1:23:21,2:21:837:2:75:-0.127778,0,-68.7205 0/1:24:19,5:19:745:5:197:-5.07615,0,-60.1488 dDocent_Contig_5381 7 . C T 252.411 . AB=0.423077;ABP=4.34659;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X3M1X2M1X;DP=37;DPB=37;DPRA=0;EPP=29.068;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1.33333;MQM=36.5;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=468;QR=908;RO=24;RPL=0;RPP=29.068;RPPR=55.1256;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:9:7,1:7:260:1:40:-0.601735,0,-21.2125 0|1:17:7,10:7:268:10:390:-26.4363,0,-19.3654 0|0:11:10,1:10:380:1:38:0,-0.130609,-31.3714 dDocent_Contig_5382 11 . G A 546.071 . AB=0.102564;ABP=56.5176;AC=0;AF=0;AN=6;AO=4;CIGAR=1X2M1X6M1X2M1X1M1X2M2X1M1X5M1X3M;DP=67;DPB=67;DPRA=0;EPP=11.6962;EPPR=50.7827;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=138;QR=854;RO=22;RPL=0;RPP=11.6962;RPPR=50.7827;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:18:7,0,2,6,1,2:7:268:0,2,6,1,2:0,69,205,8,70:-14.5593,-16.6665,-38.6836,-11.0546,-33.0777,-32.4756,0,-22.0467,-16.4407,-20.2405,-16.5126,-38.5203,-32.9166,-21.8927,-38.2193,-10.9676,-32.991,-27.3849,-16.3537,-32.8299,-32.389 0|0:21:8,6,2,3,2,0:8:315:6,2,3,2,0:207,69,103,67,0:-14.4108,0,-24.1363,-11.2129,-20.3404,-36.5468,-8.45516,-17.5852,-28.789,-33.4891,-11.4216,-20.5488,-31.7533,-28.997,-36.7546,-16.819,-25.9425,-37.1489,-34.3922,-37.3567,-42.7528 0|0:28:7,2,0,8,0,11:7:271:2,0,8,0,11:70,0,275,0,385:-29.238,-25.6495,-47.3194,-31.3453,-47.9215,-53.6164,-9.01451,-25.5947,-31.2887,-28.8805,-31.3453,-47.9215,-53.6164,-31.2887,-53.6164,-0.0380897,-16.6228,-22.3166,0,-22.3166,-19.0053 dDocent_Contig_5383 10 . T C 2736.09 . AB=0.192982;ABP=609.689;AC=3;AF=0.5;AN=6;AO=143;CIGAR=1X;DP=741;DPB=741;DPRA=0;EPP=313.531;EPPR=1258.48;GTI=0;LEN=1;MEANALT=1;MQM=56.1958;MQMR=46.1589;NS=3;NUMALT=1;ODDS=0;PAIRED=0.944056;PAIREDR=0.657191;PAO=0;PQA=0;PQR=0;PRO=0;QA=5714;QR=23770;RO=598;RPL=0;RPP=313.531;RPPR=1301.55;RPR=143;RUN=1;SAF=143;SAP=313.531;SAR=0;SRF=593;SRP=1258.48;SRR=5;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:239:192,47:192:7582:47:1884:-92.7135,0,-537.29 0/1:213:175,38:175:6933:38:1511:-66.1643,0,-495.826 0/1:289:231,58:231:9255:58:2319:-118.448,0,-682.151 dDocent_Contig_5384 17 . A G 547.251 . AB=0.236842;ABP=25.8679;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X1M1X;DP=52;DPB=52;DPRA=0;EPP=22.5536;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=332;QR=1156;RO=30;RPL=0;RPP=22.5536;RPPR=68.1545;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:14:9,0,5:9:343:0,5:0,202:-14.3474,-17.0567,-45.1778,0,-28.5165,-27.0113 1|0:12:1,3,8:1:38:3,8:108,316:-31.4014,-22.9006,-25.1123,-5.67493,0,-6.38819 0|1:26:20,6,0:20:775:6,0:224,0:-12.6929,0,-62.2495,-18.7135,-64.0557,-82.3928 dDocent_Contig_5385 33 . C T 510.2 . AB=0.761905;ABP=15.5221;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X;DP=49;DPB=49;DPRA=1.5;EPP=37.7539;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.969697;PAO=0;PQA=0;PQR=0;PRO=0;QA=647;QR=1335;RO=33;RPL=0;RPP=37.7539;RPPR=74.6689;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:445:0:0:0,-3.31133,-40.4057 0/0:17:17,0:17:685:0:0:0,-5.11751,-61.9802 0/1:21:5,16:5:205:16:647:-52.2419,0,-12.5134 dDocent_Contig_5386 84 . G T 894.256 . AB=0.373737;ABP=16.7191;AC=3;AF=0.5;AN=6;AO=37;CIGAR=1X;DP=99;DPB=99;DPRA=0;EPP=83.3548;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1355;QR=2222;RO=62;RPL=37;RPP=83.3548;RPPR=137.642;RPR=0;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:9,20:9:332:20:745:-58.6437,0,-21.5012 0/1:10:4,6:4:130:6:202:-15.4956,0,-9.00516 0/1:60:49,11:49:1760:11:408:-19.003,0,-140.613 dDocent_Contig_5387 9 . A G 100.159 . AB=0.0618557;ABP=164.751;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=2M1X;DP=157;DPB=157;DPRA=0;EPP=16.0391;EPPR=280.959;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=220;QR=4807;RO=128;RPL=0;RPP=16.0391;RPPR=280.959;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=128;SRP=280.959;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:60:48,6,6,0:48:1770:6,6,0:229,231,0:-4.51926,-0.182042,-143.104,0,-125.941,-142.925,-18.9687,-144.91,-144.731,-163.699 0|1:39:31,5,0,3:31:1176:5,0,3:185,0,105:-5.81527,0,-94.9527,-15.1472,-96.4579,-111.592,-6.61417,-87.9199,-103.053,-102.15 0|1:58:49,6,0,3:49:1861:6,0,3:221,0,115:-3.31048,0,-150.803,-18.061,-152.609,-170.679,-8.6172,-143.171,-161.24,-160.337 dDocent_Contig_5388 7 . C G 392.117 . AB=0.576923;ABP=4.34659;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=46;DPB=46;DPRA=0.65;EPP=35.5824;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.966667;PAO=0;PQA=0;PQR=0;PRO=0;QA=533;QR=1142;RO=30;RPL=0;RPP=35.5824;RPPR=68.1545;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:1,9:1:39:9:328:-26.8522,0,-0.886264 0/1:16:9,6:9:333:6:205:-14.1242,0,-25.667 0/0:20:20,0:20:770:0:0:0,-6.0206,-69.6287 dDocent_Contig_5389 74 . T A 138.242 . AB=0.3;ABP=9.95901;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=62;DPB=62;DPRA=0.952381;EPP=16.0391;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=230;QR=2144;RO=56;RPL=6;RPP=16.0391;RPPR=124.613;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:837:0:0:0,-6.62266,-75.6476 0/1:20:14,6:14:539:6:230:-15.0461,0,-42.8315 0/0:20:20,0:20:768:0:0:0,-6.0206,-69.447 dDocent_Contig_5391 7 . C A 319.988 . AB=0.197368;ABP=63.4687;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=2M1X2M;DP=76;DPB=74.8;DPRA=0;EPP=35.5824;EPPR=105.07;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=55.617;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=0.638298;PAO=0;PQA=0;PQR=0;PRO=0;QA=575;QR=1797;RO=47;RPL=0;RPP=35.5824;RPPR=105.07;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:28:16,3,4,0,5:16:613:3,4,0,5:15,153,0,186:-10.3095,-15.3768,-63.7493,-2.52347,-52.0957,-50.6842,-15.126,-64.6524,-51.8884,-64.451,0,-49.5856,-36.81,-49.376,-47.8708 0|1:20:12,0,7,0,1:12:460:0,7,0,1:0,266,0,39:-18.1944,-21.8067,-57.5071,0,-35.6876,-33.5804,-21.8067,-57.5071,-35.6876,-57.5071,-18.6063,-54.3069,-32.4864,-54.3069,-54.0059 0|1:28:19,3,4,2,0:19:724:3,4,2,0:15,156,72,0:-7.21117,-13.2089,-71.6189,0,-59.6962,-58.2845,-7.57333,-67.19,-54.1527,-66.383,-12.9307,-72.522,-59.4887,-66.985,-72.3204 dDocent_Contig_5392 41 . A C 40.5573 . AB=0.25;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=44;DPB=44;DPRA=0.444444;EPP=7.35324;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1643;RO=42;RPL=0;RPP=7.35324;RPPR=94.2121;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:29,0:29:1142:0:0:0,-8.72987,-103.064 0/1:8:6,2:6:235:2:81:-5.27749,0,-19.1108 0/0:7:7,0:7:266:0:0:0,-2.10721,-24.296 dDocent_Contig_5393 16 . T A 78.0917 . AB=0.285714;ABP=8.59409;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=58;DPB=58;DPRA=0.880952;EPP=16.0391;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=209;QR=2057;RO=52;RPL=0;RPP=16.0391;RPPR=115.927;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:10,4:10:405:4:140:-8.72754,0,-32.596 0/0:21:21,0:21:821:0:0:0,-6.32163,-74.2022 0/0:23:21,2:21:831:2:69:0,-0.37115,-68.5516 dDocent_Contig_5394 8 . T G 63.0686 . AB=0.117647;ABP=24.5973;AC=0;AF=0;AN=6;AO=2;CIGAR=1X1M1X3M1X2M1X;DP=35;DPB=35;DPRA=1.41667;EPP=7.35324;EPPR=65.983;GTI=0;LEN=1;MEANALT=2;MQM=9;MQMR=60;NS=3;NUMALT=2;ODDS=1.73472e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=1120;RO=29;RPL=0;RPP=7.35324;RPPR=65.983;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:17:13,2,2:13:506:2,2:78,79:-2.73952,-5.78798,-46.7671,0,-40.8678,-41.2431 0|0:12:12,0,0:12:455:0,0:0,0:0,-3.61236,-41.2982,-3.61236,-41.2982,-41.2982 0|0:6:4,0,2:4:159:0,2:0,81:-5.87955,-7.08367,-20.1698,0,-13.4882,-12.8862 dDocent_Contig_5395 46 . C T 89.1453 . AB=0.307692;ABP=7.18621;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=25;DPB=25;DPRA=2.16667;EPP=11.6962;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=152;QR=830;RO=21;RPL=0;RPP=11.6962;RPPR=48.6112;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:360:0:0:0,-2.70927,-32.7634 0/0:3:3,0:3:120:0:0:0,-0.90309,-11.1879 0/1:13:9,4:9:350:4:152:-10.1356,0,-27.9432 dDocent_Contig_5396 11 . T C 84.6488 . AB=0.126761;ABP=88.9211;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=118;DPB=118;DPRA=0.755319;EPP=22.5536;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=349;QR=4255;RO=109;RPL=0;RPP=22.5536;RPPR=239.701;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:20,4:20:763:4:156:-7.19223,0,-61.7625 0/1:47:42,5:42:1652:5:193:-3.59048,0,-134.776 0/0:47:47,0:47:1840:0:0:0,-14.1484,-165.816 dDocent_Contig_5397 19 . G A 75.5769 . AB=0.114286;ABP=93.4676;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=203;DPB=203;DPRA=0.753086;EPP=22.5536;EPPR=406.904;GTI=0;LEN=1;MEANALT=2;MQM=56.8889;MQMR=59.8925;NS=3;NUMALT=1;ODDS=0;PAIRED=0.555556;PAIREDR=0.973118;PAO=0;PQA=0;PQR=0;PRO=0;QA=363;QR=7340;RO=186;RPL=0;RPP=22.5536;RPPR=406.904;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=186;SRP=406.904;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:81:77,0:77:3052:0:0:0,-23.1793,-274.38 0/1:70:59,8:59:2280:8:323:-8.77954,0,-184.777 0/0:52:50,1:50:2008:1:40:0,-11.7614,-176.907 dDocent_Contig_5398 21 . G T 417.365 . AB=0.531915;ABP=3.42611;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1M3D1M1X1M1X;DP=47;DPB=37.625;DPRA=0;EPP=57.2971;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1.66667;MQM=28.96;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.12;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=942;QR=790;RO=20;RPL=0;RPP=57.2971;RPPR=46.4397;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:12:4,7:4:158:7:264:-9.47399,0,-10.8907 0|1:18:9,9:9:358:9:343:-13.0905,0,-27.1654 0|1:17:7,9:7:274:9:335:-22.8887,0,-19.8202 dDocent_Contig_5399 7 . C T 1642.18 . AB=0.0638298;ABP=80.6751;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=2X4M;DP=81;DPB=81;DPRA=0;EPP=9.52472;EPPR=33.4109;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=534;RO=14;RPL=0;RPP=9.52472;RPPR=33.4109;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:30:7,4,1,17:7:272:4,1,17:152,38,646:-50.8853,-40.5256,-61.6771,-49.8757,-59.7646,-71.9297,0,-9.8991,-19.25,-17.2494 0|0:34:7,4,0,23:7:262:4,0,23:150,0,869:-69.1243,-58.9451,-79.1958,-71.2316,-80.4,-92.6866,0,-9.16809,-21.4552,-14.5315 1|0:17:0,1,2,13:0:0:1,2,13:39,78,505:-47.9135,-44.7075,-44.4064,-41.5015,-38.2954,-40.8994,-6.4147,-3.20784,0,-2.50131 dDocent_Contig_5400 77 . A T 37.7119 . AB=0.4;ABP=3.87889;AC=1;AF=0.166667;AN=6;AO=36;CIGAR=1X;DP=90;DPB=90;DPRA=0;EPP=81.1833;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=8.88889;MQMR=7.11111;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1092;QR=1829;RO=54;RPL=36;RPP=81.1833;RPPR=120.27;RPR=0;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:20,11:20:670:11:342:0,-2.16892,-5.48911 0/0:49:28,21:28:952:21:616:0,-1.74435,-5.21353 0/1:10:6,4:6:207:4:134:-4.39306,0,-0.83617 dDocent_Contig_5401 10 . G A 224.837 . AB=0.168539;ABP=87.9417;AC=2;AF=0.333333;AN=6;AO=22;CIGAR=1X;DP=167;DPB=167;DPRA=0;EPP=50.7827;EPPR=317.874;GTI=0;LEN=1;MEANALT=1;MQM=50.9545;MQMR=55.8414;NS=3;NUMALT=1;ODDS=0;PAIRED=0.818182;PAIREDR=0.972414;PAO=0;PQA=0;PQR=0;PRO=0;QA=879;QR=5726;RO=145;RPL=0;RPP=50.7827;RPPR=317.874;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=145;SRP=317.874;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:78:71,7:71:2786:7:276:0,-1.93482,-220.231 0/1:36:28,8:28:1106:8:323:-18.6019,0,-80.2089 0/1:53:46,7:46:1834:7:280:-6.20056,0,-149.242 dDocent_Contig_5402 7 . C T 786.241 . AB=0.0882353;ABP=53.0819;AC=0;AF=0;AN=6;AO=3;CIGAR=1X1M1X1M1X2M1X;DP=59;DPB=59;DPRA=0;EPP=9.52472;EPPR=59.4686;GTI=0;LEN=1;MEANALT=3;MQM=11;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=996;RO=26;RPL=0;RPP=9.52472;RPPR=59.4686;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:12:2,2,7:2:75:2,7:77,270:-21.6986,-20.9788,-26.5185,0,-4.9435,-4.1076 0|0:22:11,1,9:11:427:1,9:40,346:-25.0768,-27.7219,-62.5236,0,-34.6474,-32.607 0|0:25:13,0,12:13:494:0,12:0,475:-35.5651,-39.4785,-79.9831,0,-40.8925,-37.2801 dDocent_Contig_5403 79 . C G 121.342 . AB=0.35;ABP=6.91895;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=61;DPB=61;DPRA=0.97561;EPP=18.2106;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=212;QR=1889;RO=54;RPL=7;RPP=18.2106;RPPR=120.27;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1073:0:0:0,-9.33193,-96.8754 0/1:20:13,7:13:459:7:212:-13.3561,0,-35.6243 0/0:10:10,0:10:357:0:0:0,-3.0103,-32.4722 dDocent_Contig_5404 7 . C T 180.361 . AB=0.166667;ABP=14.5915;AC=0;AF=0;AN=6;AO=2;CIGAR=3X7M;DP=37;DPB=37.3;DPRA=0;EPP=7.35324;EPPR=52.9542;GTI=0;LEN=1;MEANALT=3;MQM=48;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.5;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=74;QR=896;RO=23;RPL=0;RPP=7.35324;RPPR=52.9542;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:12:6,3,2,0:6:235:3,2,0:104,74,0:-6.63031,0,-18.4336,-2.65434,-13.5607,-21.3942,-8.43649,-19.3367,-21.9963,-27.7768 0|0:3:1,0,0,1:1:39:0,0,1:0,0,41:-3.09295,-3.39398,-6.59656,-3.39398,-6.59656,-6.59656,0,-3.20588,-3.20588,-2.90485 0|0:22:16,0,0,5:16:622:0,0,5:0,0,204:-12.0215,-16.838,-67.9374,-16.838,-67.9374,-67.9374,0,-51.1018,-51.1018,-49.5966 dDocent_Contig_5405 21 . G T 256.057 . AB=0.75;ABP=9.52472;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=27;DPB=27;DPRA=1.6;EPP=22.5536;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=331;QR=724;RO=18;RPL=0;RPP=22.5536;RPPR=42.0968;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:3,9:3:123:9:331:-26.5265,0,-7.85243 0/0:8:8,0:8:326:0:0:0,-2.40824,-29.7099 0/0:7:7,0:7:275:0:0:0,-2.10721,-25.1159 dDocent_Contig_5406 29 . A T 253.285 . AB=0.34;ABP=14.1282;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=73;DPB=73;DPRA=1.08696;EPP=39.9253;EPPR=122.441;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.882353;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=467;QR=1892;RO=55;RPL=0;RPP=39.9253;RPPR=122.441;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:20,15:20:721:15:396:-25.1092,0,-54.42 0/1:14:12,2:12:433:2:71:-2.52748,0,-35.0953 0/0:23:23,0:23:738:0:0:0,-6.92369,-66.7033 dDocent_Contig_5407 8 . T A 31.8971 . AB=0.2;ABP=10.8276;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=23;DPB=23;DPRA=1.53846;EPP=7.35324;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.1429;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.904762;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=812;RO=21;RPL=0;RPP=7.35324;RPPR=48.6112;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:8,2:8:305:2:75:-4.11004,0,-24.764 0/0:5:5,0:5:197:0:0:0,-1.50515,-18.0733 0/0:8:8,0:8:310:0:0:0,-2.40824,-28.2636 dDocent_Contig_5408 28 . T C 38.1556 . AB=0.153846;ABP=30.0702;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=30;DPB=30;DPRA=3.25;EPP=11.6962;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=0.846154;PAO=0;PQA=0;PQR=0;PRO=0;QA=147;QR=1050;RO=26;RPL=0;RPP=11.6962;RPPR=59.4686;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4,0:4:162:0:0:0,-1.20412,-14.967 0/1:12:10,2:10:407:2:72:-3.22288,0,-33.3782 0/1:14:12,2:12:481:2:75:-2.90438,0,-39.426 dDocent_Contig_5409 1 . N G 125.14 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=5.18177;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0.25;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=128;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=1;SAP=5.18177;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:88:-8.21187,-0.90309,0 1/1:1:0,1:0:0:1:40:-3.99568,-0.30103,0 dDocent_Contig_5410 98 . N G 2225.78 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=80;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=176.728;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2463;QR=0;RO=0;RPL=80;RPP=176.728;RPPR=0;RPR=0;RUN=1;SAF=80;SAP=176.728;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:79:0,79:0:0:79:2428:-218.774,-23.7814,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_5411 165 . C G 496.973 . AB=0.365385;ABP=11.1951;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=52;DPB=52;DPRA=0;EPP=44.2683;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=755;QR=1312;RO=33;RPL=19;RPP=44.2683;RPPR=74.6689;RPR=0;RUN=1;SAF=0;SAP=44.2683;SAR=19;SRF=0;SRP=74.6689;SRR=33;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:17,7:17:680:7:277:-18.0751,0,-54.3059 0/1:10:5,5:5:199:5:197:-15.0955,0,-15.2781 0/1:18:11,7:11:433:7:281:-20.2434,0,-33.9034 dDocent_Contig_5412 137 . C T 90.2184 . AB=0.444444;ABP=3.25157;AC=1;AF=0.25;AN=4;AO=4;CIGAR=1X;DP=15;DPB=15;DPRA=1.5;EPP=11.6962;EPPR=26.8965;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=142;QR=389;RO=11;RPL=0;RPP=11.6962;RPPR=26.8965;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=26.8965;SRR=11;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:216:0:0:0,-1.80618,-19.79 ./.:.:.:.:.:.:.:. 0/1:9:5,4:5:173:4:142:-10.4196,0,-13.1993 dDocent_Contig_5413 1 . N G 435.079 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=13;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=11.1951;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=40.4615;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=493;QR=0;RO=0;RPL=0;RPP=31.2394;RPPR=0;RPR=13;RUN=1;SAF=10;SAP=11.1951;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:76:-6.85062,-0.60206,0 1/1:2:0,2:0:0:2:78:-7.04231,-0.60206,0 1/1:9:0,9:0:0:9:339:-29.135,-2.70927,0 dDocent_Contig_5414 11 . A T 71.4107 . AB=0.3;ABP=6.48466;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=31;DPB=31;DPRA=0.952381;EPP=9.52472;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1126;RO=28;RPL=0;RPP=9.52472;RPPR=63.8115;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:721:0:0:0,-5.41854,-65.2158 0/0:3:3,0:3:122:0:0:0,-0.90309,-11.3725 0/1:10:7,3:7:283:3:122:-8.36219,0,-22.8327 dDocent_Contig_5415 19 . A G 461.014 . AB=0.4;ABP=5.61607;AC=4;AF=0.666667;AN=6;AO=16;CIGAR=1X;DP=34;DPB=34;DPRA=0;EPP=37.7539;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=626;QR=699;RO=18;RPL=0;RPP=37.7539;RPPR=42.0968;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:158:-14.5994,-1.20412,0 0/1:9:5,4:5:200:4:151:-11.2464,0,-15.6704 0/1:21:13,8:13:499:8:317:-22.574,0,-38.9341 dDocent_Contig_5416 162 . G A 1222.98 . AB=0.630769;ABP=12.665;AC=2;AF=0.333333;AN=6;AO=42;CIGAR=1X;DP=77;DPB=77;DPRA=0;EPP=94.2121;EPPR=62.6327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1630;QR=1321;RO=35;RPL=42;RPP=94.2121;RPPR=62.6327;RPR=0;RUN=1;SAF=0;SAP=94.2121;SAR=42;SRF=0;SRP=79.0118;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:3,19:3:105:19:762:-62.279,0,-3.16956 0/0:12:11,1:11:428:1:35:0,-0.113731,-35.3724 0/1:43:21,22:21:788:22:833:-62.3311,0,-58.2776 dDocent_Contig_5417 150 . A T 66.5897 . AB=0.363636;ABP=4.78696;AC=1;AF=0.25;AN=4;AO=4;CIGAR=1X;DP=29;DPB=29;DPRA=0.611111;EPP=11.6962;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=906;RO=25;RPL=0;RPP=11.6962;RPPR=57.2971;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:661:0:0:0,-5.41854,-59.8193 0/1:11:7,4:7:245:4:123:-8.05691,0,-19.0783 ./.:.:.:.:.:.:.:. dDocent_Contig_5418 18 . T G 617.003 . AB=0.5625;ABP=4.09604;AC=1;AF=0.166667;AN=6;AO=18;CIGAR=1X2M2X;DP=53;DPB=53;DPRA=2.46154;EPP=42.0968;EPPR=63.8115;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.944444;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=650;QR=1081;RO=28;RPL=0;RPP=42.0968;RPPR=63.8115;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:32:13,18,0:13:503:18,0:650,0:-49.1142,0,-35.9031,-53.0276,-41.3216,-94.3529 0|0:13:13,0,0:13:497:0,0:0,0:0,-3.91339,-45.0713,-3.91339,-45.0713,-45.0713 0|0:8:2,0,6:2:81:0,6:0,189:-14.9049,-15.507,-22.2086,0,-7.08367,-5.27749 dDocent_Contig_5419 26 . C T 93.5313 . AB=0.4;ABP=3.87889;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=18;DPB=18;DPRA=2.5;EPP=11.6962;EPPR=25.3454;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.7143;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.928571;PAO=0;PQA=0;PQR=0;PRO=0;QA=147;QR=559;RO=14;RPL=0;RPP=11.6962;RPPR=33.4109;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=13;SRP=25.3454;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:282:0:0:0,-2.10721,-25.7526 0/0:1:1,0:1:38:0:0:0,-0.30103,-3.79727 0/1:10:6,4:6:239:4:147:-10.572,0,-18.8712 dDocent_Contig_5420 16 . C T 184.161 . AB=0.195652;ABP=40.0197;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=116;DPB=116;DPRA=1.31429;EPP=22.5536;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=368;QR=4268;RO=107;RPL=0;RPP=22.5536;RPPR=235.358;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:34,0:34:1333:0:0:0,-10.235,-120.229 0/0:36:36,0:36:1440:0:0:0,-10.8371,-129.853 0/1:46:37,9:37:1495:9:368:-19.638,0,-120.943 dDocent_Contig_5421 7 . C T 1100.33 . 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N C 137.083 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=5;CIGAR=2X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=33;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=153;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:50:-4.35198,-0.60206,0 1|1:2:0,2:0:0:2:69:-5.82714,-0.60206,0 1|1:1:0,1:0:0:1:34:-3.04619,-0.30103,0 dDocent_Contig_5426 14 . C A 177.727 . AB=0.0882353;ABP=53.0819;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=2X;DP=130;DPB=130;DPRA=0.666667;EPP=9.52472;EPPR=208.392;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=53.6182;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.863636;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=4330;RO=110;RPL=0;RPP=9.52472;RPPR=241.872;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=106;SRP=208.392;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:34:29,3,2:29:1137:3,2:115,81:-0.695211,0,-81.552,-2.76346,-75.7981,-84.6363 0|0:45:33,0,12:33:1289:0,12:0,371:-18.9667,-28.9007,-128.523,0,-99.9397,-96.3273 0|0:51:48,0,3:48:1904:0,3:0,34:0,-14.4494,-164.352,-12.9514,-162.957,-162.054 dDocent_Contig_5427 27 . T A 1036.37 . AB=0.4;ABP=11.2619;AC=3;AF=0.5;AN=6;AO=38;CIGAR=1X;DP=95;DPB=95;DPRA=0;EPP=85.5263;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1499;QR=2285;RO=57;RPL=0;RPP=85.5263;RPPR=126.784;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:16,17:16:635:17:657:-49.5218,0,-47.5507 0/1:34:26,8:26:1037:8:324:-19.2942,0,-83.3898 0/1:28:15,13:15:613:13:518:-38.5378,0,-47.078 dDocent_Contig_5428 141 . A C 97.5069 . AB=0.4;ABP=3.87889;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=20;DPB=20;DPRA=2;EPP=11.6962;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=148;QR=589;RO=16;RPL=0;RPP=11.6962;RPPR=37.7539;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:6,4:6:213:4:148:-10.6707,0,-16.5011 0/0:7:7,0:7:272:0:0:0,-2.10721,-24.8472 0/0:3:3,0:3:104:0:0:0,-0.90309,-9.70309 dDocent_Contig_5430 9 . A C 36.0881 . AB=0.352941;ABP=12.5903;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X;DP=51;DPB=51;DPRA=0;EPP=42.0968;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=13.6667;MQMR=51.2727;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.818182;PAO=0;PQA=0;PQR=0;PRO=0;QA=691;QR=1273;RO=33;RPL=0;RPP=42.0968;RPPR=74.6689;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:10,8:10:389:8:307:-1.1482,0,-29.9498 0/1:21:16,5:16:613:5:191:-1.38956,0,-39.0474 0/1:12:7,5:7:271:5:193:-4.65027,0,-16.7567 dDocent_Contig_5431 89 . C A 51.6992 . AB=0.272727;ABP=7.94546;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=45;DPB=45;DPRA=0.647059;EPP=9.52472;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=1445;RO=42;RPL=3;RPP=9.52472;RPPR=94.2121;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:827:0:0:0,-7.22472,-74.7465 0/0:10:10,0:10:349:0:0:0,-3.0103,-31.7468 0/1:11:8,3:8:269:3:104:-6.39176,0,-21.2273 dDocent_Contig_5432 20 . C G 39.941 . AB=0.121212;ABP=44.1367;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=80;DPB=80;DPRA=1.40426;EPP=11.6962;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=3014;RO=76;RPL=0;RPP=11.6962;RPPR=168.042;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:930:0:0:0,-6.92369,-84.0013 0/0:24:24,0:24:938:0:0:0,-7.22472,-84.7254 0/1:33:29,4:29:1146:4:164:-5.21591,0,-93.4892 dDocent_Contig_5434 28 . G C 1231.62 . AB=0.381356;ABP=17.4377;AC=2;AF=0.333333;AN=6;AO=46;CIGAR=1X;DP=142;DPB=142;DPRA=0;EPP=102.898;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1820;QR=3766;RO=96;RPL=0;RPP=102.898;RPPR=211.472;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:76:42,34:42:1647:34:1342:-98.1691,0,-125.58 0/1:42:31,11:31:1214:11:440:-27.3113,0,-96.8954 0/0:24:23,1:23:905:1:38:0,-3.42745,-77.9504 dDocent_Contig_5436 16 . A C 804.464 . AB=0.37037;ABP=14.8328;AC=3;AF=0.5;AN=6;AO=30;CIGAR=1X;DP=81;DPB=81;DPRA=0;EPP=68.1545;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.966667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1194;QR=2014;RO=51;RPL=0;RPP=68.1545;RPPR=113.755;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:12,3:12:474:3:123:-6.94934,0,-38.493 0/1:26:9,17:9:356:17:673:-53.0765,0,-24.5735 0/1:40:30,10:30:1184:10:398:-24.1372,0,-94.7991 dDocent_Contig_5439 12 . G A 337.023 . AB=0.18018;ABP=101.626;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=1X;DP=171;DPB=171;DPRA=0.925;EPP=46.4397;EPPR=330.903;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=764;QR=5998;RO=151;RPL=0;RPP=46.4397;RPPR=330.903;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=151;SRP=330.903;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:60:60,0:60:2375:0:0:0,-18.0618,-213.909 0/1:47:41,6:41:1624:6:213:-5.35744,0,-132.255 0/1:64:50,14:50:1999:14:551:-30.6636,0,-160.839 dDocent_Contig_5441 44 . G A 171.847 . AB=0.263158;ABP=12.2676;AC=4;AF=0.666667;AN=6;AO=7;CIGAR=1X;DP=21;DPB=21;DPRA=0;EPP=18.2106;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=267;QR=500;RO=14;RPL=0;RPP=18.2106;RPPR=33.4109;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:6,1:6:187:1:39:-1.78935,0,-15.0196 0/1:12:8,4:8:313:4:147:-9.97196,0,-24.9219 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 dDocent_Contig_5442 14 . G A 216.24 . AB=0.380952;ABP=5.59539;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=45;DPB=45;DPRA=1.75;EPP=20.3821;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=320;QR=1470;RO=37;RPL=0;RPP=20.3821;RPPR=83.3548;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:200:0:0:0,-1.50515,-18.3795 0/1:21:13,8:13:523:8:320:-22.8457,0,-41.0963 0/0:19:19,0:19:747:0:0:0,-5.71957,-67.5528 dDocent_Contig_5444 76 . C T 66.056 . AB=0.235294;ABP=13.3567;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=34;DPB=34;DPRA=2;EPP=11.6962;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=990;RO=30;RPL=4;RPP=11.6962;RPPR=68.1545;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:275:0:0:0,-2.70927,-25.0474 0/1:17:13,4:13:436:4:140:-7.82742,0,-34.4438 0/0:8:8,0:8:279:0:0:0,-2.40824,-25.449 dDocent_Contig_5445 32 . C T 360.069 . AB=0.26087;ABP=37.2818;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=125;DPB=125;DPRA=0.616071;EPP=42.0968;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=649;QR=3999;RO=107;RPL=0;RPP=42.0968;RPPR=235.358;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:33,11:33:1241:11:395:-22.6417,0,-98.7374 0/1:25:18,7:18:674:7:254:-15.6839,0,-53.4633 0/0:56:56,0:56:2084:0:0:0,-16.8577,-187.784 dDocent_Contig_5446 11 . G A 3654.09 . AB=0.546667;ABP=7.26639;AC=3;AF=0.5;AN=6;AO=123;CIGAR=1X;DP=225;DPB=225;DPRA=0;EPP=270.101;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4846;QR=3910;RO=102;RPL=0;RPP=270.101;RPPR=224.5;RPR=123;RUN=1;SAF=123;SAP=270.101;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:63:34,29:34:1308:29:1125:-82.5748,0,-99.0326 0/1:92:42,50:42:1587:50:1963:-149.182,0,-115.381 0/1:70:26,44:26:1015:44:1758:-137.369,0,-70.5783 dDocent_Contig_5447 133 . T A 30.7977 . AB=0.121951;ABP=53.9075;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=99;DPB=99;DPRA=1.41379;EPP=13.8677;EPPR=207.129;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=181;QR=3388;RO=94;RPL=0;RPP=13.8677;RPPR=207.129;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=207.129;SRR=94;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:908:0:0:0,-7.52575,-82.0344 0/1:41:36,5:36:1261:5:181:-4.30126,0,-101.44 0/0:33:33,0:33:1219:0:0:0,-9.93399,-110.009 dDocent_Contig_5448 95 . T A 367.212 . AB=0.4;ABP=6.48466;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=50;DPB=50;DPRA=2;EPP=37.7539;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=560;QR=1213;RO=34;RPL=16;RPP=37.7539;RPPR=76.8404;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7441 0/1:11:6,5:6:217:5:177:-12.9657,0,-16.5704 0/1:29:18,11:18:636:11:383:-26.0742,0,-48.8366 dDocent_Contig_5450 12 . C T 67.708 . AB=0.3;ABP=6.48466;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=21;DPB=21;DPRA=1.81818;EPP=9.52472;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=719;RO=18;RPL=0;RPP=9.52472;RPPR=42.0968;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:319:0:0:0,-2.40824,-29.0769 0/1:10:7,3:7:280:3:118:-7.9919,0,-22.5604 0/0:3:3,0:3:120:0:0:0,-0.90309,-11.1877 dDocent_Contig_5451 45 . T A 65.6512 . AB=0.25;ABP=9.52472;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=2X;DP=22;DPB=22;DPRA=2.4;EPP=9.52472;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=754;RO=19;RPL=0;RPP=9.52472;RPPR=44.2683;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:12:9,3:9:355:3:119:-7.48303,0,-28.6992 0|0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0|0:9:9,0:9:358:0:0:0,-2.70927,-32.5812 dDocent_Contig_5452 115 . T A 217.013 . AB=0.444444;ABP=3.49285;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=30;DPB=30;DPRA=0.863636;EPP=22.5536;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=58.5556;MQMR=56.9524;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.904762;PAO=0;PQA=0;PQR=0;PRO=0;QA=305;QR=653;RO=21;RPL=0;RPP=22.5536;RPPR=48.6112;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:10,8:10:317:8:280:-20.1215,0,-23.4201 1/1:1:0,1:0:0:1:25:-2.49728,-0.30103,0 0/0:11:11,0:11:336:0:0:0,-3.31133,-29.1979 dDocent_Contig_5454 222 . A G 78.1005 . AB=0.236842;ABP=25.8679;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X1M1X;DP=77;DPB=77;DPRA=0;EPP=3.87889;EPPR=146.327;GTI=0;LEN=1;MEANALT=1.33333;MQM=34;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=344;QR=2454;RO=66;RPL=10;RPP=24.725;RPPR=146.327;RPR=0;RUN=1;SAF=6;SAP=3.87889;SAR=4;SRF=0;SRP=146.327;SRR=66;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:28:22,6:22:811:6:205:-5.74022,0,-64.8823 0|1:10:7,3:7:264:3:104:-4.38844,0,-21.1092 0|0:39:37,1:37:1379:1:35:0,-8.40529,-121.255 dDocent_Contig_5456 7 . C T 166.275 . AB=0.277778;ABP=18.4519;AC=3;AF=0.5;AN=6;AO=10;CIGAR=2X;DP=36;DPB=36;DPRA=0;EPP=24.725;EPPR=24.391;GTI=0;LEN=1;MEANALT=1;MQM=36;MQMR=54.6923;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.807692;PAO=0;PQA=0;PQR=0;PRO=0;QA=376;QR=948;RO=26;RPL=0;RPP=24.725;RPPR=59.4686;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=21;SRP=24.391;SRR=5;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:16:12,4:12:413:4:153:-7.7459,0,-31.4497 0|1:10:7,3:7:267:3:106:-6.02247,0,-21.3819 0|1:10:7,3:7:268:3:117:-6.57578,0,-21.4737 dDocent_Contig_5457 1 . N G 134.107 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=138;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 dDocent_Contig_5458 88 . C T 47.3807 . AB=0.666667;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=42;DPB=42;DPRA=0.454545;EPP=9.52472;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=106;QR=1344;RO=39;RPL=3;RPP=9.52472;RPPR=87.6977;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:3:1,2:1:35:2:69:-5.64957,0,-2.59554 0/0:17:16,1:16:552:1:37:0,-1.41968,-46.3091 0/0:22:22,0:22:757:0:0:0,-6.62266,-68.4494 dDocent_Contig_5460 9 . C T 322.403 . AB=0.358974;ABP=9.74743;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=39;DPB=39;DPRA=0;EPP=33.4109;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=518;QR=965;RO=25;RPL=0;RPP=33.4109;RPPR=57.2971;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:11,2:11:424:2:76:-3.30128,0,-34.6008 0/1:11:9,2:9:346:2:71:-3.42975,0,-28.1875 0/1:15:5,10:5:195:10:371:-29.2228,0,-13.4087 dDocent_Contig_5461 15 . T C 373.718 . AB=0.22093;ABP=61.1856;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=86;DPB=86;DPRA=0;EPP=44.2683;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=732;QR=2595;RO=67;RPL=0;RPP=44.2683;RPPR=148.499;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:13,5:13:479:5:187:-11.7736,0,-38.023 0/1:18:10,8:10:385:8:311:-22.9355,0,-29.5868 0/1:50:44,6:44:1731:6:234:-6.37944,0,-140.972 dDocent_Contig_5462 12 . G A 235.241 . AB=0.294118;ABP=9.26925;AC=3;AF=0.5;AN=6;AO=5;CIGAR=1X2M;DP=32;DPB=32;DPRA=0;EPP=13.8677;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=855;RO=22;RPL=0;RPP=13.8677;RPPR=50.7827;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:13:10,0,3:10:394:0,3:0,121:-7.3666,-10.3769,-42.7845,0,-32.8083,-31.9052 0|1:15:10,5,0:10:387:5,0:200,0:-13.8641,0,-30.6711,-16.8744,-32.1762,-48.6554 0|1:4:2,0,2:2:74:0,2:0,76:-6.01014,-6.6122,-12.6613,0,-6.42382,-5.82176 dDocent_Contig_5463 18 . A T 45.5548 . AB=0.137931;ABP=36.0317;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=71;DPB=71;DPRA=1.38095;EPP=11.6962;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.6418;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=2628;RO=67;RPL=0;RPP=11.6962;RPPR=148.499;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:846:0:0:0,-6.62266,-76.4507 0/0:20:20,0:20:801:0:0:0,-6.0206,-72.4087 0/1:29:25,4:25:981:4:157:-5.77731,0,-79.8459 dDocent_Contig_5464 13 . T G 4255.1 . AB=0.441667;ABP=10.1038;AC=3;AF=0.5;AN=6;AO=106;CIGAR=2X1M1X;DP=240;DPB=240;DPRA=0;EPP=233.186;EPPR=72.4974;GTI=0;LEN=1;MEANALT=6;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0.971698;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4103;QR=1244;RO=32;RPL=0;RPP=233.186;RPPR=72.4974;RPR=106;RUN=1;SAF=106;SAP=233.186;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:107:8,30,5,48,8:8:297:30,5,48,8:1177,197,1844,311:-221.436,-127.054,-142.324,-207.637,-135.146,-230.432,-72.4943,0,-80.5854,-82.3439,-198.291,-125.801,-206.384,-71.2401,-220.183 0|1:46:2,9,11,18,5:2:80:9,11,18,5:360,437,703,201:-86.5676,-57.5131,-61.3943,-51.1948,-28.1281,-54.4739,-29.3832,-6.31737,0,-30.555,-70.6046,-47.5381,-41.2198,-19.4085,-75.6899 0|1:87:22,17,4,40,3:22:867:17,4,40,3:686,158,1556,122:-121.223,-71.2929,-137.501,-114.845,-129.617,-184.965,0,-14.7684,-58.32,-59.2795,-117.782,-132.555,-176.106,-61.2569,-188.204 dDocent_Contig_5465 23 . T C 252.8 . AB=0.409091;ABP=4.58955;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=39;DPB=39;DPRA=2.58824;EPP=22.5536;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=364;QR=1117;RO=30;RPL=0;RPP=22.5536;RPPR=68.1545;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:424:0:0:0,-3.31133,-38.5123 0/0:6:6,0:6:205:0:0:0,-1.80618,-18.7814 0/1:22:13,9:13:488:9:364:-26.5017,0,-37.6318 dDocent_Contig_5466 8 . G C 2571.02 . AB=0.455446;ABP=6.49326;AC=3;AF=0.5;AN=6;AO=92;CIGAR=1X3M;DP=202;DPB=202;DPRA=0;EPP=202.786;EPPR=228.843;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3548;QR=3976;RO=104;RPL=0;RPP=202.786;RPPR=228.843;RPR=92;RUN=1;SAF=92;SAP=202.786;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:46:22,0,24:22:841:0,24:0,918:-69.0886,-75.7113,-144.717,0,-69.3878,-62.1631 0|1:66:42,0,24:42:1605:0,24:0,922:-63.4299,-76.0732,-207.764,0,-132.074,-124.849 0|1:90:40,6,44:40:1530:6,44:234,1708:-128.3,-121.107,-244.84,0,-106.3,-112.291 dDocent_Contig_5471 130 . A G 194.618 . AB=0.5;ABP=3.0103;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=26;DPB=26;DPRA=1.125;EPP=22.5536;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=295;QR=557;RO=17;RPL=0;RPP=22.5536;RPPR=39.9253;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=39.9253;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:6,6:6:196:6:195:-14.2563,0,-14.3492 0/1:6:3,3:3:100:3:100:-7.52419,0,-7.52435 0/0:8:8,0:8:261:0:0:0,-2.40824,-23.8091 dDocent_Contig_5473 100 . N A 75.9611 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1M3I1M10X1M2D1M;DP=2;DPB=2.125;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:80:-7.59179,-0.60206,0 dDocent_Contig_5474 140 . C T 173.739 . AB=0.583333;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=23;DPB=23;DPRA=2.18182;EPP=18.2106;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=544;RO=16;RPL=0;RPP=18.2106;RPPR=37.7539;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1,0:1:35:0:0:0,-0.30103,-3.49863 0/1:12:5,7:5:173:7:243:-18.5928,0,-12.2978 0/0:10:10,0:10:336:0:0:0,-3.0103,-30.5652 dDocent_Contig_5475 41 . G A 31.3056 . AB=0.1875;ABP=16.582;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=31;DPB=31;DPRA=0.533333;EPP=9.52472;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=107;QR=1110;RO=28;RPL=0;RPP=9.52472;RPPR=63.8115;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:590:0:0:0,-4.51545,-53.4395 0/1:9:8,1:8:316:1:40:-1.28641,0,-26.0963 0/1:7:5,2:5:204:2:67:-4.25247,0,-16.6368 dDocent_Contig_5476 44 . G T 131.955 . AB=0.833333;ABP=8.80089;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=34;DPB=34;DPRA=0.428571;EPP=13.8677;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=173;QR=1161;RO=29;RPL=0;RPP=13.8677;RPPR=65.983;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:1,5:1:40:5:173:-14.0936,0,-2.1895 0/0:8:8,0:8:322:0:0:0,-2.40824,-29.3483 0/0:20:20,0:20:799:0:0:0,-6.0206,-72.2261 dDocent_Contig_5478 45 . T A 1103.32 . AB=0.547945;ABP=4.46786;AC=3;AF=0.5;AN=6;AO=40;CIGAR=1X;DP=73;DPB=73;DPRA=0;EPP=89.8692;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1500;QR=1211;RO=33;RPL=0;RPP=89.8692;RPPR=74.6689;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:4,21:4:120:21:749:-60.1905,0,-3.56747 0/1:25:18,7:18:676:7:272:-17.3198,0,-53.6358 0/1:23:11,12:11:415:12:479:-36.5375,0,-30.7768 dDocent_Contig_5479 7 . C T 189.578 . AB=0.236842;ABP=25.8679;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=78;DPB=78;DPRA=1.9;EPP=22.5536;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=344;QR=2648;RO=69;RPL=0;RPP=22.5536;RPPR=152.842;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:29,9:29:1118:9:344:-19.8786,0,-89.4828 0/0:25:25,0:25:953:0:0:0,-7.52575,-86.0857 0/0:15:15,0:15:577:0:0:0,-4.51545,-52.2715 dDocent_Contig_5481 8 . G T 1214.69 . AB=0.435185;ABP=6.95112;AC=3;AF=0.5;AN=6;AO=47;CIGAR=1X;DP=108;DPB=108;DPRA=0;EPP=105.07;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=55.9787;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1805;QR=2310;RO=61;RPL=0;RPP=105.07;RPPR=135.47;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:8,8:8:292:8:297:-22.2554,0,-21.811 0/1:27:17,10:17:644:10:389:-27.2218,0,-50.1666 0/1:65:36,29:36:1374:29:1119:-75.7086,0,-104.377 dDocent_Contig_5482 15 . G A 289.727 . AB=0.192771;ABP=71.0585;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=83;DPB=83;DPRA=0;EPP=37.7539;EPPR=146.327;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=629;QR=2573;RO=66;RPL=0;RPP=37.7539;RPPR=146.327;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:16,2:16:618:2:82:-1.95827,0,-50.1328 0/1:22:15,7:15:587:7:271:-18.1301,0,-46.5479 0/1:42:35,7:35:1368:7:276:-12.5629,0,-110.748 dDocent_Contig_5485 194 . G T 53.4763 . AB=0.2;ABP=22.5536;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=53;DPB=53;DPRA=0.446429;EPP=13.8677;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=1800;RO=48;RPL=5;RPP=13.8677;RPPR=107.241;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=107.241;SRR=48;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:7,3:7:253:3:99:-6.22502,0,-20.1049 0/1:15:13,2:13:460:2:57:-0.896923,0,-37.2113 0/0:28:28,0:28:1087:0:0:0,-8.42884,-98.1192 dDocent_Contig_5487 112 . C T 112.873 . AB=0.416667;ABP=3.73412;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=2X1M1X3M1X;DP=20;DPB=20;DPRA=0.75;EPP=13.8677;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=183;QR=503;RO=15;RPL=0;RPP=13.8677;RPPR=35.5824;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=35.5824;SRR=15;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:10:6,4:6:202:4:144:-10.3025,0,-15.5007 0|1:2:1,1:1:33:1:39:-3.2945,0,-2.69707 0|0:8:8,0:8:268:0:0:0,-2.40824,-24.4474 dDocent_Contig_5488 55 . A T 353.033 . AB=0.368421;ABP=8.7247;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=38;DPB=38;DPRA=0;EPP=33.4109;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.958333;PAO=0;PQA=0;PQR=0;PRO=0;QA=548;QR=939;RO=24;RPL=14;RPP=33.4109;RPPR=55.1256;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:12,5:12:456:5:198:-13.0799,0,-36.259 0/1:15:11,4:11:442:4:156:-9.8995,0,-35.6204 0/1:6:1,5:1:41:5:194:-16.0223,0,-2.28839 dDocent_Contig_5491 8 . C T 270.638 . AB=0.354839;ABP=8.68415;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=39;DPB=39;DPRA=1.9375;EPP=26.8965;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=422;QR=1080;RO=28;RPL=0;RPP=26.8965;RPPR=63.8115;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:8,9:8:308:9:347:-26.4722,0,-22.9643 0/0:8:8,0:8:312:0:0:0,-2.40824,-28.4449 0/1:14:12,2:12:460:2:75:-2.90592,0,-37.5362 dDocent_Contig_5492 114 . G A 474.439 . AB=0.47619;ABP=3.21711;AC=2;AF=0.333333;AN=6;AO=21;CIGAR=1X;DP=55;DPB=55;DPRA=0;EPP=48.6112;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=721;QR=1110;RO=34;RPL=0;RPP=48.6112;RPPR=76.8404;RPR=21;RUN=1;SAF=0;SAP=48.6112;SAR=21;SRF=0;SRP=76.8404;SRR=34;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:13,16:13:441:16:549:-41.0056,0,-31.2854 0/1:13:9,4:9:284:4:137:-8.75482,0,-21.9537 0/0:13:12,1:12:385:1:35:0,-0.414761,-31.4613 dDocent_Contig_5493 85 . G A 705.921 . AB=0.421053;ABP=4.03889;AC=4;AF=0.666667;AN=6;AO=25;CIGAR=1X;DP=37;DPB=37;DPRA=0;EPP=57.2971;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=901;QR=412;RO=12;RPL=25;RPP=57.2971;RPPR=29.068;RPR=0;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:6,6:6:202:6:215:-16.0865,0,-14.8982 0/1:7:5,2:5:175:2:72:-4.72943,0,-13.9864 1/1:18:1,17:1:35:17:614:-52.0948,-1.91991,0 dDocent_Contig_5494 113 . G A 36.0213 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=22;DPB=22;DPRA=0.444444;EPP=7.35324;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=35;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=698;RO=20;RPL=0;RPP=7.35324;RPPR=46.4397;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:279:0:0:0,-2.40824,-25.449 0/1:4:2,2:2:70:2:69:-4.82383,0,-5.44328 0/0:10:10,0:10:349:0:0:0,-3.0103,-31.7468 dDocent_Contig_5495 17 . C A 2293.04 . AB=0.100511;ABP=1630.4;AC=0;AF=0;AN=6;AO=118;CIGAR=1M2X;DP=1174;DPB=1264.67;DPRA=0;EPP=259.244;EPPR=1581.67;GTI=0;LEN=1;MEANALT=8.33333;MQM=23.3644;MQMR=45.8693;NS=3;NUMALT=2;ODDS=0;PAIRED=0.245763;PAIREDR=0.207703;PAO=0;PQA=0;PQR=0;PRO=0;QA=4659;QR=28595;RO=727;RPL=0;RPP=259.244;RPPR=1581.67;RPR=118;RUN=1;SAF=118;SAP=259.244;SAR=0;SRF=727;SRP=1581.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:412:239,99,39:239:9365:99,39:2714,1530:-114.948,0,-604.948,-136.559,-584.417,-759.534 0|0:386:236,86,42:236:9278:86,42:2130,1665:-73.3841,0,-630.755,-71.7549,-583.985,-715.757 0|0:376:252,68,37:252:9952:68,37:1753,1464:-44.6883,0,-651.558,-68.5219,-620.005,-729.383 dDocent_Contig_5496 20 . C T 57.8972 . AB=0.25;ABP=9.52472;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=2X;DP=21;DPB=21;DPRA=2.66667;EPP=9.52472;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=46.6667;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.333333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=719;RO=18;RPL=0;RPP=9.52472;RPPR=42.0968;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:12:9,3:9:360:3:118:-6.70904,0,-29.1514 0|0:7:7,0:7:278:0:0:0,-2.10721,-25.3896 0|0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 dDocent_Contig_5497 48 . T C 741.099 . AB=0.52;ABP=3.18402;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=59.4686;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1020;QR=963;RO=24;RPL=0;RPP=59.4686;RPPR=55.1256;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:2,8:2:80:8:298:-24.1571,0,-4.58149 0/1:23:12,11:12:479:11:435:-32.5816,0,-36.5366 0/1:17:10,7:10:404:7:287:-21.0877,0,-31.6014 dDocent_Contig_5498 8 . C T 117.092 . AB=0.134146;ABP=98.3432;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=112;DPB=112;DPRA=1.36667;EPP=26.8965;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.181818;PAIREDR=0.920792;PAO=0;PQA=0;PQR=0;PRO=0;QA=422;QR=3879;RO=101;RPL=0;RPP=26.8965;RPPR=222.329;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:16,3:16:605:3:113:-4.81984,0,-49.0657 0/0:30:30,0:30:1138:0:0:0,-9.0309,-102.721 0/1:63:55,8:55:2136:8:309:-9.20808,0,-173.498 dDocent_Contig_5499 11 . C T 216.421 . AB=0.243902;ABP=26.3669;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X2M1X;DP=56;DPB=56;DPRA=0;EPP=26.8965;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.866667;PAO=0;PQA=0;PQR=0;PRO=0;QA=430;QR=1788;RO=45;RPL=0;RPP=26.8965;RPPR=100.727;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:30:25,5:25:998:5:197:-9.0752,0,-81.0898 0|0:15:14,1:14:550:1:35:0,-1.01682,-46.3448 0|1:11:6,5:6:240:5:198:-14.8851,0,-18.6641 dDocent_Contig_5500 118 . A G 2071.31 . AB=0.253425;ABP=80.1124;AC=5;AF=0.833333;AN=6;AO=37;CIGAR=1X6M;DP=146;DPB=146;DPRA=0;EPP=83.3548;EPPR=52.9542;GTI=0;LEN=1;MEANALT=3.66667;MQM=53.2973;MQMR=58.5217;NS=3;NUMALT=4;ODDS=2.77556e-17;PAIRED=0.243243;PAIREDR=0.608696;PAO=0;PQA=0;PQR=0;PRO=0;QA=1206;QR=772;RO=23;RPL=0;RPP=83.3548;RPPR=52.9542;RPR=37;RUN=1;SAF=0;SAP=83.3548;SAR=37;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:35:7,3,14,5,6:7:230:3,14,5,6:100,466,174,105:-34.9805,-28.9886,-46.681,0,-10.507,-14.3955,-22.9269,-33.4258,-4.44046,-40.0195,-30.9535,-41.4447,-12.4898,-35.3869,-47.733 1|1:39:2,0,26,11,0:2:66:0,26,11,0:0,859,358,0:-89.2076,-89.8096,-95.1465,-23.2773,-28.6148,-20.788,-61.1872,-66.5244,0,-63.2131,-89.8096,-95.1465,-28.6148,-66.5244,-95.1465 1|1:72:14,5,30,21,1:14:476:5,30,21,1:151,976,674,35:-86.6593,-78.9132,-116.002,-14.5805,-41.2192,-44.1472,-37.6883,-64.3245,0,-69.9624,-88.2956,-114.929,-50.6001,-73.706,-126.588 dDocent_Contig_5501 1 . N G 140.731 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=145;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:75:-7.12034,-0.60206,0 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 dDocent_Contig_5502 20 . G A 135.475 . AB=0.384615;ABP=4.51363;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=34;DPB=34;DPRA=2.33333;EPP=16.0391;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.892857;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=1108;RO=28;RPL=0;RPP=16.0391;RPPR=63.8115;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:8,5:8:320:5:200:-14.4665,0,-25.2534 0/0:6:6,0:6:228:0:0:0,-1.80618,-20.8811 0/0:15:14,1:14:560:1:40:0,-0.519771,-46.7447 dDocent_Contig_5503 52 . C T 99.8488 . AB=0.333333;ABP=6.62942;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=32;DPB=32;DPRA=1.76471;EPP=13.8677;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=171;QR=958;RO=27;RPL=5;RPP=13.8677;RPPR=61.6401;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:170:0:0:0,-1.50515,-15.6336 0/1:15:10,5:10:360:5:171:-11.2065,0,-28.2272 0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8591 dDocent_Contig_5504 78 . C A 92.8485 . AB=0.307692;ABP=7.18621;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=35;DPB=35;DPRA=1.6875;EPP=13.8677;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=1146;RO=30;RPL=5;RPP=13.8677;RPPR=68.1545;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:13,1:13:495:1:39:0,-0.317855,-41.0004 0/0:8:8,0:8:306:0:0:0,-2.40824,-27.9006 0/1:13:9,4:9:345:4:156:-10.5039,0,-27.4949 dDocent_Contig_5505 24 . A T 78.347 . AB=0.375;ABP=4.09604;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=45;DPB=45;DPRA=0.432432;EPP=9.52472;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=1646;RO=42;RPL=0;RPP=9.52472;RPPR=94.2121;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:615:0:0:0,-4.81648,-55.6773 0/0:21:21,0:21:837:0:0:0,-6.32163,-75.6446 0/1:8:5,3:5:194:3:123:-9.05655,0,-15.4194 dDocent_Contig_5506 14 . G T 145.771 . AB=0.3;ABP=9.95901;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=28;DPB=28;DPRA=1.25;EPP=16.0391;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=881;RO=22;RPL=0;RPP=16.0391;RPPR=50.7827;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:325:0:0:0,-2.40824,-29.6196 0/1:10:9,1:9:357:1:41:-1.08427,0,-29.4783 0/1:10:5,5:5:199:5:204:-15.7337,0,-15.2764 dDocent_Contig_5507 7 . C T 103.11 . AB=0.153846;ABP=57.1301;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=68;DPB=68;DPRA=1.625;EPP=20.3821;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.5333;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.433333;PAO=0;PQA=0;PQR=0;PRO=0;QA=306;QR=2294;RO=60;RPL=0;RPP=20.3821;RPPR=133.299;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:19,3:19:729:3:115:-4.10223,0,-59.2732 0/1:30:25,5:25:943:5:191:-8.5272,0,-76.1455 0/0:16:16,0:16:622:0:0:0,-4.81648,-56.3201 dDocent_Contig_5508 77 . T C 65.8194 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=32;DPB=32;DPRA=0.461538;EPP=9.52472;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=103;QR=1002;RO=29;RPL=3;RPP=9.52472;RPPR=65.983;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:411:0:0:0,-3.61236,-37.3193 0/1:6:3,3:3:103:3:103:-7.80379,0,-7.80379 0/0:14:14,0:14:488:0:0:0,-4.21442,-44.2516 dDocent_Contig_5509 64 . A G 313.117 . AB=0.387097;ABP=6.44263;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=41;DPB=41;DPRA=1.55;EPP=29.068;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=469;QR=1135;RO=29;RPL=12;RPP=29.068;RPPR=65.983;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:394:0:0:0,-3.0103,-35.8191 0/1:26:16,10:16:622:10:388:-27.4499,0,-48.4914 0/1:5:3,2:3:119:2:81:-6.18058,0,-9.58986 dDocent_Contig_5510 8 . C T 138.107 . AB=0.21875;ABP=24.9965;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=76;DPB=76;DPRA=1.45455;EPP=18.2106;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.927536;PAO=0;PQA=0;PQR=0;PRO=0;QA=270;QR=2624;RO=69;RPL=0;RPP=18.2106;RPPR=152.842;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:32,0:32:1188:0:0:0,-9.63296,-107.209 0/0:12:12,0:12:464:0:0:0,-3.61236,-42.1111 0/1:32:25,7:25:972:7:270:-15.0326,0,-78.1601 dDocent_Contig_5511 17 . A T 310.824 . AB=0.458333;ABP=3.37221;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=55;DPB=55;DPRA=1.54839;EPP=26.8965;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.977273;PAO=0;PQA=0;PQR=0;PRO=0;QA=432;QR=1739;RO=44;RPL=0;RPP=26.8965;RPPR=98.5551;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:13,11:13:516:11:432:-32.0029,0,-39.5611 0/0:4:4,0:4:156:0:0:0,-1.20412,-14.4162 0/0:27:27,0:27:1067:0:0:0,-8.12781,-96.3151 dDocent_Contig_5512 15 . G A 70.7046 . AB=0.333333;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=90;DPB=90;DPRA=0.222222;EPP=9.52472;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=3385;RO=87;RPL=0;RPP=9.52472;RPPR=191.928;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:43:43,0:43:1653:0:0:0,-12.9443,-149.016 0/0:38:38,0:38:1494:0:0:0,-11.4391,-134.719 0/1:9:6,3:6:238:3:118:-8.29231,0,-19.0847 dDocent_Contig_5513 1 . N G 66.502 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=58;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:70:-6.64588,-0.60206,0 dDocent_Contig_5514 38 . A G 93.482 . AB=0.285714;ABP=8.59409;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=24;DPB=24;DPRA=2.8;EPP=11.6962;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.95;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=771;RO=20;RPL=0;RPP=11.6962;RPPR=46.4397;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4,0:4:155:0:0:0,-1.20412,-14.3227 0/1:14:10,4:10:375:4:160:-10.5696,0,-29.8836 0/0:6:6,0:6:241:0:0:0,-1.80618,-22.0663 dDocent_Contig_5515 41 . C A 119.765 . AB=0.3125;ABP=7.89611;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=65;DPB=65;DPRA=1.41176;EPP=16.0391;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=230;QR=2336;RO=59;RPL=0;RPP=16.0391;RPPR=131.127;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:671:0:0:0,-5.11751,-60.7201 0/0:32:31,1:31:1233:1:34:0,-6.23405,-107.842 0/1:16:11,5:11:432:5:196:-13.1984,0,-34.4088 dDocent_Contig_5516 15 . T C 1595.09 . AB=0.102362;ABP=177.429;AC=6;AF=1;AN=6;AO=13;CIGAR=1X3M;DP=127;DPB=127;DPRA=0;EPP=31.2394;EPPR=31.2394;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=511;QR=504;RO=13;RPL=0;RPP=31.2394;RPPR=31.2394;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:52:5,3,31,2,4,6:5:188:3,31,2,4,6:116,827,42,148,244:-59.9167,-53.6942,-68.2036,-4.73921,-12.4294,-10.8168,-58.7868,-66.4718,-17.5274,-73.5963,-49.8434,-57.5292,-8.57682,-62.6215,-64.0524,-41.2759,-48.9627,0,-54.0556,-45.1116,-54.8847 1|1:28:0,0,13,3,6,5:0:0:0,13,3,6,5:0,359,116,230,185:-44.1721,-44.1721,-44.1721,-17.8714,-17.8714,-13.958,-35.2777,-35.2777,-8.98324,-34.3746,-26.287,-26.287,0,-17.3887,-24.4808,-29.0294,-29.0294,-2.73808,-20.1318,-11.1362,-27.5242 1|1:47:8,0,11,7,19,2:8:316:0,11,7,19,2:0,399,111,734,82:-59.1364,-61.5446,-87.5606,-30.2726,-56.2951,-52.9837,-55.5174,-81.5273,-50.2739,-79.4201,-5.2483,-31.2847,0,-25.2765,-25.5651,-54.7716,-80.789,-49.5221,-74.7569,-24.509,-80.187 dDocent_Contig_5518 53 . G A 64.2839 . AB=0.151515;ABP=37.8197;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=50;DPB=50;DPRA=3.88235;EPP=13.8677;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=188;QR=1694;RO=45;RPL=5;RPP=13.8677;RPPR=100.727;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:28,5:28:1056:5:188:-7.34903,0,-85.4129 0/0:12:12,0:12:449:0:0:0,-3.61236,-40.7532 0/0:5:5,0:5:189:0:0:0,-1.50515,-17.3747 dDocent_Contig_5520 11 . G A 84.2542 . AB=0.266667;ABP=10.1038;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=33;DPB=33;DPRA=1.66667;EPP=11.6962;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.5862;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=150;QR=1131;RO=29;RPL=0;RPP=11.6962;RPPR=65.983;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:11,4:11:429:4:150:-9.34621,0,-34.4437 0/0:8:8,0:8:309:0:0:0,-2.40824,-28.1694 0/0:10:10,0:10:393:0:0:0,-3.0103,-35.673 dDocent_Contig_5521 66 . G A 253.123 . AB=0.307692;ABP=15.538;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=39;DPB=39;DPRA=0;EPP=29.068;EPPR=45.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.851852;PAO=0;PQA=0;PQR=0;PRO=0;QA=441;QR=972;RO=27;RPL=12;RPP=29.068;RPPR=61.6401;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=25;SRP=45.5551;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:12,3:12:429:3:110:-5.74497,0,-34.4331 0/1:9:5,4:5:184:4:148:-10.9727,0,-14.2092 0/1:15:10,5:10:359:5:183:-12.3113,0,-28.1366 dDocent_Contig_5522 15 . T C 18905.5 . AB=0.669575;ABP=232.047;AC=3;AF=0.5;AN=6;AO=614;CIGAR=2M1X;DP=917;DPB=917;DPRA=0;EPP=1336.29;EPPR=550.517;GTI=0;LEN=1;MEANALT=4;MQM=55.9935;MQMR=53.8561;NS=3;NUMALT=1;ODDS=5.55112e-17;PAIRED=0.957655;PAIREDR=0.939394;PAO=0;PQA=0;PQR=0;PRO=0;QA=24557;QR=10401;RO=264;RPL=0;RPP=1336.29;RPPR=576.279;RPR=614;RUN=1;SAF=614;SAP=1336.29;SAR=0;SRF=261;SRP=550.517;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:309:104,194:104:4100:194:7729:-579.298,0,-263.057 0|1:291:101,179:101:3976:179:7172:-550.299,0,-252.996 0|1:317:59,241:59:2325:241:9656:-764.673,0,-108.15 dDocent_Contig_5523 17 . A T 891.126 . 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AB=0.529412;ABP=3.13803;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=29;DPB=29;DPRA=0.708333;EPP=22.5536;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=56;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=307;QR=759;RO=20;RPL=0;RPP=22.5536;RPPR=46.4397;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:455:0:0:0,-3.61236,-41.297 0/1:11:7,4:7:267:4:138:-9.43075,0,-21.0816 0/1:6:1,5:1:37:5:169:-13.7141,0,-1.89165 dDocent_Contig_5525 17 . T C 2403.45 . 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AB=0.468085;ABP=3.42611;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1X;DP=47;DPB=47;DPRA=0;EPP=50.7827;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=875;QR=1006;RO=25;RPL=0;RPP=50.7827;RPPR=57.2971;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:15,6:15:600:6:235:-15.1991,0,-48.0168 0/1:10:8,2:8:324:2:79:-4.48694,0,-26.5191 0/1:16:2,14:2:82:14:561:-46.0118,0,-2.9632 dDocent_Contig_5527 78 . A G 146.179 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=46;DPB=46;DPRA=0.705882;EPP=16.0391;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=209;QR=1408;RO=40;RPL=6;RPP=16.0391;RPPR=89.8692;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:6,6:6:209:6:209:-15.5387,0,-15.5386 0/0:13:13,0:13:466:0:0:0,-3.91339,-42.2787 0/0:21:21,0:21:733:0:0:0,-6.32163,-66.293 dDocent_Contig_5528 53 . T A 2124.45 . AB=0.258621;ABP=32.3626;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1X1M1X;DP=99;DPB=99;DPRA=0.707317;EPP=35.5824;EPPR=57.2971;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=593;QR=976;RO=25;RPL=15;RPP=35.5824;RPPR=57.2971;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:30:6,13,11:6:224:13,11:517,435:-58.2426,-17.481,-31.8986,-24.252,0,-39.2717 0|0:28:17,2,9:17:672:2,9:76,363:-24.8236,-23.7128,-78.4072,0,-49.0844,-52.606 0|0:41:2,0,39:2:80:0,39:0,1545:-131.698,-132.3,-138.89,-4.75044,-11.7402,0 dDocent_Contig_5530 44 . A C 575.273 . AB=0.0956522;ABP=166.324;AC=1;AF=0.25;AN=4;AO=11;CIGAR=2X2M2X;DP=121;DPB=121;DPRA=19.1667;EPP=26.8965;EPPR=157.185;GTI=0;LEN=1;MEANALT=4;MQM=56;MQMR=60;NS=2;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=433;QR=2703;RO=71;RPL=11;RPP=26.8965;RPPR=157.185;RPR=0;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:115:65,7,27,11:65:2465:7,27,11:276,960,433:-58.6238,-56.113,-256.118,0,-180.024,-193.972,-42.6217,-222.66,-166.535,-241.425 .:.:.:.:.:.:.:. 0|0:6:6,0,0,0:6:238:0,0,0:0,0,0:0,-1.80618,-21.7945,-1.80618,-21.7945,-21.7945,-1.80618,-21.7945,-21.7945,-21.7945 dDocent_Contig_5531 158 . G A 82.7278 . AB=0.3;ABP=9.95901;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=31;DPB=31;DPRA=3.63636;EPP=4.45795;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=166;QR=736;RO=25;RPL=4;RPP=4.45795;RPPR=57.2971;RPR=2;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:14,6:14:399:6:166:-9.19285,0,-30.1682 0/0:3:3,0:3:82:0:0:0,-0.90309,-7.65265 0/0:8:8,0:8:255:0:0:0,-2.40824,-23.2636 dDocent_Contig_5532 15 . T C 195.522 . AB=0.285714;ABP=14.1779;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=46;DPB=46;DPRA=0.777778;EPP=20.3821;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=328;QR=1517;RO=38;RPL=0;RPP=20.3821;RPPR=85.5263;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:17,3:17:669:3:123:-5.44419,0,-54.5171 0/0:18:18,0:18:725:0:0:0,-5.41854,-65.576 0/1:8:3,5:3:123:5:205:-16.4268,0,-9.05655 dDocent_Contig_5533 8 . C T 1458.98 . 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C T 46.5478 . AB=0.109375;ABP=87.8334;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=160;DPB=160;DPRA=1.33333;EPP=18.2106;EPPR=335.246;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=272;QR=6107;RO=153;RPL=0;RPP=18.2106;RPPR=335.246;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=153;SRP=335.246;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:57,7:57:2289:7:272:-5.57558,0,-186.908 0/0:25:25,0:25:997:0:0:0,-7.52575,-90.0267 0/0:71:71,0:71:2821:0:0:0,-21.3731,-253.992 dDocent_Contig_5535 78 . T A 459.493 . AB=0.487179;ABP=3.06598;AC=1;AF=0.166667;AN=6;AO=19;CIGAR=1X;DP=56;DPB=56;DPRA=4.58824;EPP=44.2683;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=651;QR=1296;RO=37;RPL=19;RPP=44.2683;RPPR=83.3548;RPR=0;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:308:0:0:0,-2.70927,-28.052 0/0:8:8,0:8:279:0:0:0,-2.40824,-25.448 0/1:39:20,19:20:709:19:651:-47.1711,0,-52.3956 dDocent_Contig_5536 19 . G A 35.4784 . AB=0.2;ABP=10.8276;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=26;DPB=26;DPRA=1.25;EPP=7.35324;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=955;RO=24;RPL=0;RPP=7.35324;RPPR=55.1256;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:193:0:0:0,-1.50515,-17.7408 0/1:10:8,2:8:321:2:82:-4.76938,0,-26.2476 0/0:11:11,0:11:441:0:0:0,-3.31133,-40.0443 dDocent_Contig_5537 7 . C T 50.317 . AB=0.230769;ABP=11.1951;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=63;DPB=63;DPRA=0.52;EPP=9.52472;EPPR=66.8516;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.0333;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.3;PAO=0;PQA=0;PQR=0;PRO=0;QA=109;QR=2238;RO=60;RPL=0;RPP=9.52472;RPPR=133.299;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=51;SRP=66.8516;SRR=9;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:35:35,0:35:1296:0:0:0,-10.536,-115.625 0/0:15:15,0:15:563:0:0:0,-4.51545,-51.005 0/1:13:10,3:10:379:3:109:-6.25355,0,-30.5491 dDocent_Contig_5539 148 . C T 38.4125 . 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AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=41;DPB=41;DPRA=1.15385;EPP=35.5824;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=572;QR=1029;RO=26;RPL=0;RPP=35.5824;RPPR=59.4686;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:15:0,15:0:0:15:572:-51.8162,-4.51545,0 0/0:9:9,0:9:353:0:0:0,-2.70927,-32.1292 0/0:17:17,0:17:676:0:0:0,-5.11751,-61.1699 dDocent_Contig_5541 29 . G C 371.798 . AB=0.631579;ABP=5.8675;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=47;DPB=47;DPRA=1.35714;EPP=29.068;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=483;QR=1366;RO=35;RPL=0;RPP=29.068;RPPR=79.0118;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:7,12:7:267:12:483:-38.1005,0,-18.6675 0/0:6:6,0:6:219:0:0:0,-1.80618,-20.0579 0/0:22:22,0:22:880:0:0:0,-6.62266,-79.5109 dDocent_Contig_5542 21 . G T 4371.68 . AB=0.455621;ABP=8.79233;AC=1;AF=0.25;AN=4;AO=154;CIGAR=2X;DP=344;DPB=344;DPRA=56.3333;EPP=337.417;EPPR=413.419;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.984127;PAO=0;PQA=0;PQR=0;PRO=0;QA=6003;QR=7285;RO=189;RPL=0;RPP=337.417;RPPR=413.419;RPR=154;RUN=1;SAF=154;SAP=337.417;SAR=0;SRF=189;SRP=413.419;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:338:183,154:183:7060:154:6003:-438.265,0,-533.326 .:.:.:.:.:.:.:. 0|0:6:6,0:6:225:0:0:0,-1.80618,-20.606 dDocent_Contig_5543 9 . G C 935.84 . 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AB=0;ABP=0;AC=4;AF=1;AN=4;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=317;QR=0;RO=0;RPL=0;RPP=24.725;RPPR=0;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:134:-12.3912,-1.20412,0 ./.:.:.:.:.:.:.:. 1/1:6:0,6:0:0:6:183:-16.7704,-1.80618,0 dDocent_Contig_5546 36 . A T 72.0306 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=1X;DP=20;DPB=20;DPRA=0.222222;EPP=3.0103;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=74;QR=693;RO=18;RPL=2;RPP=7.35324;RPPR=42.0968;RPR=0;RUN=1;SAF=1;SAP=3.0103;SAR=1;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:234:0:0:0,-1.80618,-21.4301 1/1:2:0,2:0:0:2:74:-7.02543,-0.60206,0 0/0:12:12,0:12:459:0:0:0,-3.61236,-41.6549 dDocent_Contig_5547 192 . A G 61.4237 . AB=0.285714;ABP=8.59409;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=28;DPB=28;DPRA=2;EPP=11.6962;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.25;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=950;RO=24;RPL=4;RPP=11.6962;RPPR=55.1256;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:10,4:10:386:4:122:-7.06246,0,-30.8781 0/0:3:3,0:3:119:0:0:0,-0.90309,-11.0954 0/0:11:11,0:11:445:0:0:0,-3.31133,-40.1802 dDocent_Contig_5548 15 . C T 143.082 . AB=0.375;ABP=5.18177;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=38;DPB=38;DPRA=0.363636;EPP=16.0391;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=230;QR=1281;RO=32;RPL=0;RPP=16.0391;RPPR=72.4974;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:3:1,2:1:41:2:74:-6.12093,0,-3.19148 0/1:13:9,4:9:360:4:156:-10.5037,0,-28.8502 0/0:22:22,0:22:880:0:0:0,-6.62266,-79.509 dDocent_Contig_5549 7 . C A 5596.17 . AB=0.725869;ABP=117.78;AC=3;AF=0.5;AN=6;AO=188;CIGAR=1X2M1X;DP=259;DPB=259;DPRA=0;EPP=411.247;EPPR=139.813;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7104;QR=2382;RO=63;RPL=0;RPP=411.247;RPPR=139.813;RPR=188;RUN=1;SAF=188;SAP=411.247;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:75:19,53:19:720:53:1998:-158.012,0,-43.0772 0|1:81:22,55:22:819:55:2065:-162.536,0,-50.4737 0|1:103:22,80:22:843:80:3041:-242.786,0,-45.1158 dDocent_Contig_5550 50 . A C 227.55 . AB=0.27027;ABP=19.9713;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X1M1X3M1X;DP=55;DPB=55;DPRA=1.02778;EPP=24.725;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=393;QR=1746;RO=45;RPL=10;RPP=24.725;RPPR=100.727;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:18:18,0:18:697:0:0:0,-5.41854,-63.0604 0|1:8:7,1:7:279:1:40:-1.58744,0,-23.0735 0|1:29:20,9:20:770:9:353:-23.4016,0,-60.8906 dDocent_Contig_5551 24 . C T 944.329 . AB=0.354839;ABP=8.68415;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X1M1X1M;DP=83;DPB=83;DPRA=0;EPP=26.8965;EPPR=85.5263;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=417;QR=1467;RO=38;RPL=0;RPP=26.8965;RPPR=85.5263;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:30:18,0,7,0,5:18:690:0,7,0,5:0,282,0,178:-17.8519,-23.2704,-79.9012,0,-56.6521,-54.5449,-23.2704,-79.9012,-56.6521,-79.9012,-8.78954,-65.4063,-42.1577,-65.4063,-63.9011 0|0:22:5,0,0,0,16:5:198:0,0,0,16:0,0,0,634:-50.6364,-52.1416,-68.4399,-52.1416,-68.4399,-68.4399,-52.1416,-68.4399,-68.4399,-68.4399,0,-16.3684,-16.3684,-16.3684,-11.5519 0|1:31:15,11,0,5,0:15:579:11,0,5,0:417,0,196,0:-29.6613,0,-44.2352,-34.1767,-47.5466,-81.7291,-18.0572,-31.4296,-65.6122,-64.1071,-34.1767,-47.5466,-81.7291,-65.6122,-81.7291 dDocent_Contig_5552 152 . A G 214.549 . 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C T 1880.81 . AB=0.0430108;ABP=171.708;AC=0;AF=0;AN=6;AO=4;CIGAR=1X3M1X;DP=119;DPB=119;DPRA=0;EPP=11.6962;EPPR=98.5551;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=1717;RO=44;RPL=0;RPP=11.6962;RPPR=98.5551;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:45:15,1,27,2:15:585:1,27,2:40,1022,76:-79.2591,-80.4788,-128.268,0,-44.7933,-39.9612,-77.5416,-122.336,-41.8573,-125.03 0|0:26:13,0,10,3:13:511:0,10,3:0,386,108:-27.8072,-31.7205,-73.7598,0,-42.0595,-39.0492,-22.9149,-64.9516,-33.254,-64.0485 0|0:48:16,3,29,0:16:621:3,29,0:120,1093,0:-84.7318,-79.6609,-129.782,0,-41.1231,-42.2804,-89.5483,-130.685,-51.0102,-140.572 dDocent_Contig_5554 7 . C T 30.657 . AB=0.0924855;ABP=252.554;AC=1;AF=0.166667;AN=6;AO=34;CIGAR=1X;DP=568;DPB=568;DPRA=0;EPP=76.8404;EPPR=1127.83;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=59.7259;NS=3;NUMALT=1;ODDS=0;PAIRED=0.911765;PAIREDR=0.581081;PAO=0;PQA=0;PQR=0;PRO=0;QA=1301;QR=19682;RO=518;RPL=0;RPP=76.8404;RPPR=1127.83;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=518;SRP=1127.83;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:193:180,6:180:6846:6:230:0,-35.299,-594.984 0/1:173:153,16:153:5797:16:613:-4.28717,0,-469.643 0/0:202:185,12:185:7039:12:458:0,-18.1155,-587.676 dDocent_Contig_5555 39 . G A 490.374 . AB=0.439024;ABP=4.33437;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=52;DPB=52;DPRA=1.86364;EPP=42.0968;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=53.5882;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.764706;PAO=0;PQA=0;PQR=0;PRO=0;QA=700;QR=1319;RO=34;RPL=0;RPP=42.0968;RPPR=76.8404;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:442:0:0:0,-3.31133,-39.6443 0/1:15:12,3:12:430:3:110:-5.74275,0,-31.9116 0/1:26:11,15:11:447:15:590:-45.6134,0,-32.7593 dDocent_Contig_5556 9 . G A 270.463 . 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AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=34;DPB=34;DPRA=0.5;EPP=9.52472;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.935484;PAO=0;PQA=0;PQR=0;PRO=0;QA=96;QR=1052;RO=31;RPL=3;RPP=9.52472;RPPR=70.3259;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:4:2,2:2:70:2:66:-5.06424,0,-5.44328 0/0:17:17,0:17:570:0:0:0,-5.11751,-51.6174 0/0:13:12,1:12:412:1:30:0,-0.913823,-34.4109 dDocent_Contig_5558 122 . G A 931.406 . AB=0.0549451;ABP=159.571;AC=0;AF=0;AN=6;AO=5;CIGAR=1X2M1X2M1X;DP=91;DPB=91;DPRA=0;EPP=13.8677;EPPR=96.3836;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=1421;RO=43;RPL=0;RPP=13.8677;RPPR=96.3836;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=96.3836;SRR=43;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:24:12,2,9:12:404:2,9:66,286:-19.4678,-17.7377,-49.8948,0,-27.4718,-30.1007 0|0:38:12,1,25:12:395:1,25:29,801:-60.9588,-62.2637,-93.8925,0,-29.6575,-24.4374 0|0:29:19,2,8:19:622:2,8:69,273:-16.4306,-16.5437,-66.1735,0,-44.6183,-47.8174 dDocent_Contig_5559 9 . G A 759.784 . AB=0.586207;ABP=4.88226;AC=4;AF=0.666667;AN=6;AO=25;CIGAR=1X;DP=37;DPB=37;DPRA=0;EPP=57.2971;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.96;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=955;QR=456;RO=12;RPL=0;RPP=57.2971;RPPR=29.068;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:7,10:7:261:10:385:-29.8887,0,-18.7288 1/1:8:0,8:0:0:8:301:-27.4466,-2.40824,0 0/1:12:5,7:5:195:7:269:-20.9618,0,-14.3118 dDocent_Contig_5560 8 . C T 281.128 . AB=0.2;ABP=65.5487;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=37.7539;EPPR=101.948;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.515625;PAO=0;PQA=0;PQR=0;PRO=0;QA=609;QR=2417;RO=64;RPL=0;RPP=37.7539;RPPR=141.985;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=59;SRP=101.948;SRR=5;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:16,3:16:598:3:115:-5.00532,0,-48.435 0/1:28:24,4:24:903:4:153:-5.71277,0,-73.1576 0/1:33:24,9:24:916:9:341:-21.1114,0,-72.8224 dDocent_Contig_5561 21 . C T 197.874 . AB=0.285714;ABP=14.1779;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=60;DPB=60;DPRA=1.75;EPP=20.3821;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=323;QR=2044;RO=52;RPL=0;RPP=20.3821;RPPR=115.927;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:850:0:0:0,-6.62266,-76.8086 0/1:28:20,8:20:789:8:323:-21.0092,0,-62.9 0/0:10:10,0:10:405:0:0:0,-3.0103,-36.81 dDocent_Contig_5562 8 . C T 158.645 . AB=0.242424;ABP=22.0271;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X1M;DP=111;DPB=111;DPRA=0.8875;EPP=22.5536;EPPR=215.815;GTI=0;LEN=1;MEANALT=2;MQM=59;MQMR=59.9286;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.94898;PAO=0;PQA=0;PQR=0;PRO=0;QA=332;QR=3708;RO=98;RPL=0;RPP=22.5536;RPPR=215.815;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:33:25,0,8:25:940:0,8:0,293:-16.7853,-24.3111,-101.332,0,-77.389,-74.9808 0|0:38:34,2,1:34:1289:2,1:76,39:0,-4.0039,-109.083,-7.04806,-106.5,-112.432 0|0:40:39,0,0:39:1479:0,0:0,0:0,-11.7402,-132.998,-11.7402,-132.998,-132.998 dDocent_Contig_5563 63 . A G 45.8225 . AB=0.4;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=22;DPB=22;DPRA=0.588235;EPP=7.35324;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=773;RO=20;RPL=2;RPP=7.35324;RPPR=46.4397;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:417:0:0:0,-3.31133,-37.8791 0/0:6:6,0:6:239:0:0:0,-1.80618,-21.885 0/1:5:3,2:3:117:2:77:-5.80399,0,-9.40523 dDocent_Contig_5564 7 . C T 175.905 . AB=0.266667;ABP=17.1973;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=75;DPB=75;DPRA=3.66667;EPP=26.8965;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=417;QR=2439;RO=64;RPL=0;RPP=26.8965;RPPR=141.985;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:22,8:22:817:8:302:-18.5069,0,-64.816 0/0:36:33,3:33:1274:3:115:0,-0.112185,-104.226 0/0:9:9,0:9:348:0:0:0,-2.70927,-31.6803 dDocent_Contig_5565 7 . C T 571.298 . AB=0.0594796;ABP=456.428;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X4M;DP=269;DPB=269;DPRA=0;EPP=29.6108;EPPR=109.737;GTI=0;LEN=1;MEANALT=8.66667;MQM=58.75;MQMR=53.6259;NS=3;NUMALT=6;ODDS=5.55112e-17;PAIRED=0.375;PAIREDR=0.306122;PAO=0;PQA=0;PQR=0;PRO=0;QA=598;QR=5472;RO=147;RPL=0;RPP=37.7539;RPPR=322.217;RPR=16;RUN=1;SAF=15;SAP=29.6108;SAR=1;SRF=116;SRP=109.737;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:89:35,12,8,3,7,8,7:35:1319:12,8,3,7,8,7:449,299,115,258,304,265:-26.1905,0,-103.181,-12.3707,-82.438,-116.755,-27.3577,-97.4248,-109.795,-133.247,-15.628,-85.6952,-98.0652,-113.052,-120.313,-11.7931,-81.8609,-94.231,-109.218,-97.4882,-116.178,-15.0545,-85.122,-97.4921,-112.479,-100.749,-96.9151,-119.74 0|0:107:67,0,2,10,1,13,6:67:2496:0,2,10,1,13,6:0,73,370,39,457,228:-16.3624,-36.5314,-236.831,-30.9131,-231.213,-230.611,-6.27804,-206.585,-200.968,-203.575,-33.3243,-233.624,-228.007,-203.379,-233.323,0,-200.303,-194.685,-170.058,-197.097,-196.39,-17.8259,-218.131,-212.513,-187.885,-214.924,-181.603,-216.324 0|0:73:45,8,1,0,0,11,3:45:1657:8,1,0,0,11,3:312,33,0,0,406,105:-18.2936,-6.20953,-127.975,-29.173,-127.715,-153.039,-31.84,-130.383,-153.34,-156.008,-31.84,-130.383,-153.34,-156.008,-156.008,0,-98.535,-121.493,-124.161,-124.161,-120.85,-23.3034,-121.844,-144.802,-147.47,-147.47,-115.623,-146.567 dDocent_Contig_5566 29 . C A 436.965 . AB=0.432432;ABP=4.47751;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=46;DPB=46;DPRA=2.05556;EPP=37.7539;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=627;QR=1203;RO=30;RPL=0;RPP=37.7539;RPPR=68.1545;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:19,8:19:756:8:317:-20.7688,0,-60.2328 0/1:10:2,8:2:81:8:310:-25.2464,0,-4.67543 0/0:9:9,0:9:366:0:0:0,-2.70927,-33.3052 dDocent_Contig_5567 16 . G A 98.3578 . AB=0.2;ABP=14.7363;AC=3;AF=0.5;AN=6;AO=4;CIGAR=2X2M1X;DP=22;DPB=22;DPRA=1.33333;EPP=11.6962;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=684;RO=18;RPL=0;RPP=11.6962;RPPR=42.0968;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:1:0,1:0:0:1:39:-3.89656,-0.30103,0 0|0:6:6,0:6:225:0:0:0,-1.80618,-20.6106 0|1:15:12,3:12:459:3:122:-6.85704,0,-37.1443 dDocent_Contig_5568 22 . G A 51.9687 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1M1I2M1X1M1X;DP=3;DPB=3.33333;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=30;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=72;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:3:0,2:0:0:2:72:-5.19254,-0.60206,0 dDocent_Contig_5569 103 . N C 46.5461 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X5I4X;DP=2;DPB=4;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=25;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:68:-4.65028,-0.60206,0 .:.:.:.:.:.:.:. dDocent_Contig_5570 10 . T C 63.1621 . AB=0.323529;ABP=12.2071;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X2M1X;DP=59;DPB=59;DPRA=0.68;EPP=7.94546;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=18.0909;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=381;QR=1752;RO=46;RPL=0;RPP=26.8965;RPPR=102.898;RPR=11;RUN=1;SAF=3;SAP=7.94546;SAR=8;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:18:15,3,0:15:579:3,0:115,0:-0.438836,0,-47.0341,-4.95429,-47.9372,-52.6528 0|0:25:23,0,2:23:868:0,2:0,78:0,-6.92369,-78.0509,-0.122277,-71.6382,-71.0361 0|1:16:8,8,0:8:305:8,0:266,0:-7.51825,0,-22.9931,-9.92649,-25.4014,-35.0529 dDocent_Contig_5571 58 . C A 52.3504 . AB=0.133333;ABP=20.5268;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X3M1X3M1X;DP=97;DPB=97;DPRA=0;EPP=11.6962;EPPR=176.728;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=148;QR=2795;RO=80;RPL=4;RPP=11.6962;RPPR=176.728;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:11,2,1:11:365:2,1:71,36:-2.46869,0,-28.8954,-2.8426,-26.5581,-32.0449 0|0:46:38,2,3:38:1324:2,3:77,109:0,-5.10637,-112.175,-2.53161,-103.874,-109.295 0|0:36:31,0,5:31:1106:0,5:0,173:-5.07272,-14.4047,-104.575,0,-90.5178,-89.0126 dDocent_Contig_5572 7 . C T 191.595 . AB=0.114286;ABP=274.382;AC=1;AF=0.166667;AN=6;AO=40;CIGAR=1X;DP=481;DPB=481;DPRA=0;EPP=89.8692;EPPR=960.63;GTI=0;LEN=1;MEANALT=1;MQM=59.775;MQMR=57.8118;NS=3;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=0.995465;PAO=0;PQA=0;PQR=0;PRO=0;QA=1521;QR=16778;RO=441;RPL=0;RPP=89.8692;RPPR=960.63;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=441;SRP=960.63;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:210:186,24:186:7071:24:922:-20.0803,0,-566.084 0/0:127:117,10:117:4415:10:372:0,-4.40124,-362.646 0/0:144:138,6:138:5292:6:227:0,-22.572,-445.089 dDocent_Contig_5574 15 . G A 169.65 . AB=0.222222;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X2M1X;DP=51;DPB=51;DPRA=0.473684;EPP=7.35324;EPPR=94.2121;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1633;RO=42;RPL=0;RPP=7.35324;RPPR=94.2121;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:19:19,0,0:19:742:0,0:0,0:0,-5.71957,-67.1043,-5.71957,-67.1043,-67.1043 0|0:23:17,0,6:17:652:0,6:0,233:-14.414,-19.5316,-73.0369,0,-53.8921,-52.0859 0|1:9:6,2,0:6:239:2,0:81,0:-4.86969,0,-19.0688,-6.67587,-19.6708,-26.3511 dDocent_Contig_5575 13 . T C 633.259 . AB=0.169492;ABP=58.9901;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X1M;DP=66;DPB=66;DPRA=0;EPP=24.725;EPPR=72.4974;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=400;QR=1254;RO=32;RPL=0;RPP=24.725;RPPR=72.4974;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:7:5,2,0:5:197:2,0:79,0:-5.39003,0,-15.9988,-6.89518,-16.6009,-23.1017 0|1:21:13,6,2:13:499:6,2:233,80:-15.2211,0,-39.1347,-12.5414,-34.3486,-52.8911 0|1:38:14,16,8:14:558:16,8:617,320:-46.4314,0,-41.1319,-24.2828,-19.5896,-67.8298 dDocent_Contig_5576 15 . G A 767.259 . AB=0.107547;ABP=1421.07;AC=3;AF=0.5;AN=6;AO=114;CIGAR=1X;DP=1060;DPB=1060;DPRA=0;EPP=250.558;EPPR=2015.97;GTI=0;LEN=1;MEANALT=2.33333;MQM=51.2105;MQMR=58.9061;NS=3;NUMALT=1;ODDS=0;PAIRED=0.885965;PAIREDR=0.955771;PAO=0;PQA=0;PQR=0;PRO=0;QA=4527;QR=36585;RO=927;RPL=0;RPP=250.558;RPPR=2015.97;RPR=114;RUN=1;SAF=114;SAP=250.558;SAR=0;SRF=927;SRP=2015.97;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:386:336,43:336:13262:43:1713:-34.4021,0,-1072.26 0/1:376:327,41:327:12882:41:1616:-32.1959,0,-1037.43 0/1:298:264,30:264:10441:30:1198:-13.8446,0,-834.422 dDocent_Contig_5577 83 . T C 825.626 . AB=0.1875;ABP=70.8688;AC=0;AF=0;AN=6;AO=16;CIGAR=1X3M1D8M;DP=126;DPB=122;DPRA=0;EPP=37.7539;EPPR=161.528;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=550;QR=2472;RO=73;RPL=16;RPP=37.7539;RPPR=161.528;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:46:42,1,2:42:1428:1,2:34,70:0,-9.88527,-125.419,-6.93781,-120.024,-122.18 0|0:47:16,8,23:16:540:8,23:275,793:-59.6047,-42.0883,-83.4455,0,-21.429,-36.8405 0|0:33:15,7,11:15:504:7,11:241,368:-25.2767,-10.2132,-48.937,0,-21.2467,-37.5132 dDocent_Contig_5578 107 . N T 245.989 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=22.5536;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=258;QR=0;RO=0;RPL=0;RPP=22.5536;RPPR=0;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 1/1:6:0,6:0:0:6:160:-14.6649,-1.80618,0 1/1:1:0,1:0:0:1:29:-2.89966,-0.30103,0 dDocent_Contig_5580 10 . C T 303.922 . AB=0.423077;ABP=4.34659;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=5M1X6M;DP=41;DPB=41;DPRA=0.866667;EPP=26.8965;EPPR=59.4686;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=433;QR=1014;RO=26;RPL=0;RPP=26.8965;RPPR=59.4686;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:14:8,0,6:8:311:0,6:0,240:-17.7612,-20.1695,-45.7201,0,-25.9454,-24.1392 0|1:12:3,2,5:3:119:2,5:74,193:-14.9497,-9.80194,-18.9996,0,-3.7569,-8.30011 0|0:15:15,0,0:15:584:0,0:0,0:0,-4.51545,-52.9026,-4.51545,-52.9026,-52.9026 dDocent_Contig_5581 72 . C T 143.704 . AB=0.6;ABP=3.87889;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=31;DPB=31;DPRA=0.952381;EPP=16.0391;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=771;RO=25;RPL=6;RPP=16.0391;RPPR=57.2971;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:494:0:0:0,-4.81648,-44.7587 0/0:5:5,0:5:151:0:0:0,-1.50515,-13.8891 0/1:10:4,6:4:126:6:203:-15.592,0,-8.64193 dDocent_Contig_5583 12 . T A 397.941 . AB=0.372093;ABP=9.12072;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X1M1X;DP=70;DPB=70;DPRA=0.796296;EPP=37.7539;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=604;QR=2134;RO=54;RPL=0;RPP=37.7539;RPPR=120.27;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:22:11,11:11:434:11:422:-31.7033,0,-32.7906 0|1:21:16,5:16:610:5:182:-10.4096,0,-48.9113 0|0:27:27,0:27:1090:0:0:0,-8.12781,-98.3878 dDocent_Contig_5584 176 . G A 108.27 . AB=0.363636;ABP=4.78696;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=23;DPB=23;DPRA=1.83333;EPP=11.6962;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=725;RO=19;RPL=4;RPP=11.6962;RPPR=44.2683;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:7,4:7:281:4:163:-11.7471,0,-22.3506 0/0:3:3,0:3:111:0:0:0,-0.90309,-10.3529 0/0:9:9,0:9:333:0:0:0,-2.70927,-30.3032 dDocent_Contig_5585 107 . N A 118.114 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0 1/1:3:0,3:0:0:3:89:-8.30551,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_5586 8 . C G 158.048 . AB=0.243243;ABP=24.1968;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=37;DPB=37;DPRA=0;EPP=22.5536;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=329;QR=1071;RO=28;RPL=0;RPP=22.5536;RPPR=63.8115;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:15,4:15:570:4:152:-8.33006,0,-45.9212 0/1:6:4,2:4:154:2:60:-3.893,0,-12.4273 0/1:12:9,3:9:347:3:117:-7.29802,0,-27.9775 dDocent_Contig_5588 116 . T C 450.332 . AB=0.588235;ABP=5.30951;AC=2;AF=0.333333;AN=6;AO=21;CIGAR=1X;DP=42;DPB=42;DPRA=0;EPP=48.6112;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=653;QR=680;RO=21;RPL=0;RPP=48.6112;RPPR=48.6112;RPR=21;RUN=1;SAF=0;SAP=48.6112;SAR=21;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:8,14:8:264:14:444:-33.6419,0,-17.4602 0/1:12:6,6:6:194:6:189:-13.7078,0,-14.1655 0/0:8:7,1:7:222:1:20:0,-0.408283,-18.2918 dDocent_Contig_5589 11 . T C 488.335 . AB=0.306452;ABP=23.184;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X2M;DP=62;DPB=62;DPRA=0;EPP=44.2683;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=769;QR=1611;RO=41;RPL=0;RPP=44.2683;RPPR=92.0407;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:29:14,2,13:14:537:2,13:79,526:-39.1633,-36.878,-80.3332,0,-37.5557,-40.1447 0|1:10:6,0,4:6:235:0,4:0,162:-11.9567,-13.7628,-33.0776,0,-19.714,-18.5099 0|1:23:21,0,2:21:839:0,2:0,81:-0.762044,-7.08367,-76.1818,0,-69.5022,-68.9001 dDocent_Contig_5591 107 . N T 97.9833 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.29832;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:105:-9.79616,-0.90309,0 dDocent_Contig_5592 76 . A C 336.924 . AB=0.380952;ABP=5.59539;AC=4;AF=0.666667;AN=6;AO=12;CIGAR=1X;DP=25;DPB=25;DPRA=0;EPP=29.068;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=458;QR=491;RO=13;RPL=12;RPP=29.068;RPPR=31.2394;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:8,2:8:300:2:78:-4.39317,0,-24.3465 0/1:11:5,6:5:191:6:234:-18.1198,0,-14.2471 1/1:4:0,4:0:0:4:146:-13.4977,-1.20412,0 dDocent_Contig_5593 58 . C T 48.2376 . AB=0.387097;ABP=6.44263;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=45;DPB=45;DPRA=1.10714;EPP=29.068;EPPR=22.0271;GTI=0;LEN=1;MEANALT=1;MQM=15;MQMR=50.5455;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=468;QR=1203;RO=33;RPL=0;RPP=29.068;RPPR=22.0271;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:523:0:0:0,-4.21442,-42.4104 0/1:20:13,7:13:462:7:266:-3.55771,0,-31.5391 0/1:11:6,5:6:218:5:202:-3.58285,0,-12.2635 dDocent_Contig_5595 49 . C G 129.325 . AB=0.190476;ABP=37.9607;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=47;DPB=47;DPRA=4.2;EPP=20.3821;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=302;QR=1552;RO=39;RPL=0;RPP=20.3821;RPPR=87.6977;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:18,2:18:717:2:76:-1.19366,0,-58.8359 0/0:5:5,0:5:203:0:0:0,-1.50515,-18.6531 0/1:22:16,6:16:632:6:226:-14.0721,0,-50.5937 dDocent_Contig_5596 7 . C T 34.8259 . AB=0.142857;ABP=26.2761;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=2X;DP=67;DPB=67;DPRA=0.913043;EPP=9.52472;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.333333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=2402;RO=63;RPL=0;RPP=9.52472;RPPR=139.813;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:21:18,3:18:677:3:115:-4.40326,0,-54.941 0|0:24:23,0:23:884:0:0:0,-6.92369,-79.5103 0|0:22:22,0:22:841:0:0:0,-6.62266,-76.0116 dDocent_Contig_5597 15 . G C 68.9506 . AB=0.333333;ABP=5.18177;AC=1;AF=0.25;AN=4;AO=3;CIGAR=1X;DP=16;DPB=16;DPRA=1.28571;EPP=9.52472;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=517;RO=13;RPL=0;RPP=9.52472;RPPR=31.2394;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:281:0:0:0,-2.10721,-25.662 0/1:9:6,3:6:236:3:118:-8.29293,0,-18.9027 ./.:.:.:.:.:.:.:. dDocent_Contig_5598 69 . T A 54.7106 . AB=0.238095;ABP=15.5221;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=37;DPB=37;DPRA=0.65625;EPP=13.8677;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=150;QR=1102;RO=32;RPL=5;RPP=13.8677;RPPR=72.4974;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:546:0:0:0,-4.81648,-49.4635 0/1:5:3,2:3:105:2:67:-4.85789,0,-8.29094 0/1:16:13,3:13:451:3:83:-2.92762,0,-36.1051 dDocent_Contig_5599 19 . C G 1114.49 . AB=0.299145;ABP=44.0084;AC=2;AF=0.333334;AN=6;AO=35;CIGAR=1X20M;DP=117;DPB=104.714;DPRA=0;EPP=79.0118;EPPR=113.755;GTI=0;LEN=1;MEANALT=3.66667;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1374;QR=2005;RO=51;RPL=0;RPP=79.0118;RPPR=113.755;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:24:13,0,6,0,4:13:509:0,6,0,4:0,216,0,157:-13.6896,-17.603,-59.464,0,-41.8497,-40.0435,-17.603,-59.464,-41.8497,-59.464,-4.68123,-46.5499,-28.9372,-46.5499,-45.3458 0|1:26:9,8,4,0,4:9:350:8,4,0,4:316,137,0,160:-23.3104,0,-26.3766,-14.9068,-17.671,-42.4696,-26.0197,-28.7848,-43.6737,-54.7881,-12.8291,-15.5946,-30.4891,-41.6032,-40.3991 0|1:67:29,0,4,6,27:29:1146:0,4,6,27:0,162,225,1057:-78.1657,-86.8956,-181.202,-73.5356,-167.843,-166.639,-68.4701,-162.775,-149.416,-160.969,0,-94.3089,-80.9493,-75.8838,-86.1811 dDocent_Contig_5600 23 . G A 5230.07 . AB=0.591065;ABP=23.9714;AC=3;AF=0.5;AN=6;AO=172;CIGAR=1X3M;DP=291;DPB=291;DPRA=0;EPP=376.504;EPPR=196.271;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6732;QR=3442;RO=89;RPL=0;RPP=376.504;RPPR=196.271;RPR=172;RUN=1;SAF=172;SAP=376.504;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:111:36,14,61:36:1394:14,61:551,2393:-185.955,-151.464,-261.76,0,-69.1783,-96.1446 0|1:65:20,12,33:20:771:12,33:474,1296:-100.569,-67.584,-127.278,0,-24.2949,-53.369 0|1:115:33,3,78:33:1277:3,78:118,3043:-240.2,-240.427,-344.41,0,-95.1857,-81.4127 dDocent_Contig_5602 39 . G A 88.1983 . AB=0.172414;ABP=30.0414;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=100;DPB=100;DPRA=0.816901;EPP=13.8677;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=3811;RO=95;RPL=0;RPP=13.8677;RPPR=209.3;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:24,5:24:964:5:201:-9.74065,0,-78.3299 0/0:34:34,0:34:1361:0:0:0,-10.235,-122.75 0/0:37:37,0:37:1486:0:0:0,-11.1381,-133.986 dDocent_Contig_5603 50 . T C 1099.75 . AB=0.373626;ABP=15.6335;AC=3;AF=0.5;AN=6;AO=34;CIGAR=1X3M;DP=91;DPB=91;DPRA=0;EPP=76.8404;EPPR=94.2121;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1337;QR=1635;RO=42;RPL=34;RPP=76.8404;RPPR=94.2121;RPR=0;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:38:12,5,21:12:452:5,21:203,834:-65.0332,-51.9015,-87.4212,0,-20.2608,-30.6901 0|1:31:20,8,3:20:787:8,3:313,114:-19.7215,0,-62.341,-16.3968,-55.4026,-80.2329 0|1:22:10,2,10:10:396:2,10:81,389:-28.9374,-25.2659,-57.2597,0,-25.9043,-29.5746 dDocent_Contig_5604 21 . T G 117.581 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=23;DPB=23;DPRA=0.3;EPP=9.52472;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=800;RO=20;RPL=0;RPP=9.52472;RPPR=46.4397;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:121:-11.2802,-0.90309,0 0/0:12:12,0:12:479:0:0:0,-3.61236,-43.4572 0/0:8:8,0:8:321:0:0:0,-2.40824,-29.257 dDocent_Contig_5605 49 . T A 574.7 . AB=0.44;ABP=4.57376;AC=2;AF=0.333333;AN=6;AO=23;CIGAR=1X;DP=67;DPB=67;DPRA=0;EPP=52.9542;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.977273;PAO=0;PQA=0;PQR=0;PRO=0;QA=864;QR=1700;RO=44;RPL=0;RPP=52.9542;RPPR=98.5551;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:3,15:3:122:15:564:-45.6693,0,-5.95395 0/1:32:25,7:25:954:7:260:-14.1191,0,-76.5239 0/0:17:16,1:16:624:1:40:0,-1.12183,-52.498 dDocent_Contig_5606 17 . A G 75.9603 . AB=0.25;ABP=18.2106;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=36;DPB=36;DPRA=1.75;EPP=18.2106;EPPR=15.6647;GTI=0;LEN=1;MEANALT=1;MQM=43;MQMR=45.6207;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.724138;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=1099;RO=29;RPL=0;RPP=18.2106;RPPR=65.983;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=21;SRP=15.6647;SRR=8;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:9,2:9:350:2:68:-3.1397,0,-26.6278 0/1:17:12,5:12:442:5:163:-6.77245,0,-22.7205 0/0:8:8,0:8:307:0:0:0,-2.40824,-25.7416 dDocent_Contig_5607 34 . G T 252.313 . AB=0.473684;ABP=3.12459;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=30;DPB=30;DPRA=0;EPP=24.725;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=393;QR=788;RO=20;RPL=0;RPP=24.725;RPPR=46.4397;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:6,8:6:227:8:321:-25.0437,0,-16.5771 0/1:5:4,1:4:163:1:40:-2.49053,0,-13.5533 0/0:11:10,1:10:398:1:32:0,-0.112017,-32.9802 dDocent_Contig_5608 34 . G A 350.729 . AB=0.304348;ABP=18.305;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=112;DPB=112;DPRA=1.39394;EPP=33.4109;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=550;QR=3745;RO=96;RPL=0;RPP=33.4109;RPPR=211.472;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:32,14:32:1245:14:550:-35.9937,0,-98.4702 0/0:24:24,0:24:936:0:0:0,-7.22472,-84.5427 0/0:42:40,0:40:1564:0:0:0,-12.0412,-140.588 dDocent_Contig_5609 7 . C T 198.301 . AB=0.210526;ABP=44.4969;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=105;DPB=105;DPRA=0.59375;EPP=29.068;EPPR=114.176;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=53.6022;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.580645;PAO=0;PQA=0;PQR=0;PRO=0;QA=429;QR=3519;RO=93;RPL=0;RPP=29.068;RPPR=204.957;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=81;SRP=114.176;SRR=12;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:48:48,0:48:1823:0:0:0,-14.4494,-158.791 0/1:26:18,8:18:663:8:282:-17.8921,0,-45.2892 0/1:31:27,4:27:1033:4:147:-4.25657,0,-82.5782 dDocent_Contig_5612 15 . T C 295.574 . AB=0.526316;ABP=3.12459;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=28;DPB=28;DPRA=1.05556;EPP=24.725;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=406;QR=721;RO=18;RPL=0;RPP=24.725;RPPR=42.0968;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:355:0:0:0,-2.70927,-32.3113 0/1:9:8,1:8:326:1:41:-1.3853,0,-27.0006 0/1:10:1,9:1:40:9:365:-30.2046,0,-0.985379 dDocent_Contig_5614 9 . A T 94.9076 . AB=0.333333;ABP=5.9056;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X3M1X;DP=28;DPB=28;DPRA=1.5;EPP=11.6962;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=855;RO=22;RPL=0;RPP=11.6962;RPPR=50.7827;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:12:11,0:11:417:0:0:0,-3.31133,-37.4719 0|0:4:3,0:3:119:0:0:0,-0.90309,-10.6967 0|1:12:8,4:8:319:4:155:-10.7119,0,-25.4657 dDocent_Contig_5615 209 . N G 153.112 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:117:-10.9102,-0.90309,0 dDocent_Contig_5616 33 . G T 73.97 . AB=0.178571;ABP=28.1373;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=32;DPB=32;DPRA=3.5;EPP=13.8677;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=180;QR=1064;RO=27;RPL=0;RPP=13.8677;RPPR=61.6401;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:12,4:12:477:4:142:-8.30869,0,-38.4642 0/1:12:11,1:11:429:1:38:-0.184909,0,-35.3505 0/0:4:4,0:4:158:0:0:0,-1.20412,-14.6005 dDocent_Contig_5617 7 . C T 257.339 . AB=0.384615;ABP=6.01695;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=43;DPB=43;DPRA=0.764706;EPP=24.725;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1.5;MQM=57.5;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=377;QR=1206;RO=32;RPL=0;RPP=24.725;RPPR=72.4974;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:4,9:4:148:9:340:-26.648,0,-9.39831 0/1:12:11,1:11:411:1:37:-0.0664059,0,-33.7264 0/0:17:17,0:17:647:0:0:0,-5.11751,-58.5607 dDocent_Contig_5618 13 . C A 92.1383 . AB=0.307692;ABP=7.18621;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=25;DPB=25;DPRA=2.16667;EPP=11.6962;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=152;QR=836;RO=21;RPL=0;RPP=11.6962;RPPR=48.6112;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:9,4:9:357:4:152:-10.1343,0,-28.5767 0/0:4:4,0:4:152:0:0:0,-1.20412,-14.0456 0/0:8:8,0:8:327:0:0:0,-2.40824,-29.8001 dDocent_Contig_5619 9 . A G 112.389 . AB=0.0677966;ABP=98.7391;AC=0;AF=0;AN=6;AO=4;CIGAR=2M6I2M1X5M1X1M1X;DP=171;DPB=162.308;DPRA=0;EPP=11.6962;EPPR=50.7827;GTI=0;LEN=1;MEANALT=8;MQM=17;MQMR=60;NS=3;NUMALT=7;ODDS=0;PAIRED=0;PAIREDR=1;PAO=6.25;PQA=244.5;PQR=0;PRO=0;QA=68;QR=838;RO=22;RPL=0;RPP=11.6962;RPPR=50.7827;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:58:10,2,0,0,0,4,5,0:10:387:2,0,0,0,4,5,0:32,0,0,0,31,120,0:-4.93525,-6.2025,-37.4239,-7.94555,-38.026,-39.7684,-7.94555,-38.026,-39.7684,-39.7684,-7.94555,-38.026,-39.7684,-39.7684,-39.7684,-7.28931,-37.3705,-39.1121,-39.1121,-39.1121,-37.908,0,-30.0842,-31.8262,-31.8262,-31.8262,-31.1714,-30.321,-7.94555,-38.026,-39.7684,-39.7684,-39.7684,-39.1121,-31.8262,-39.7684 0|0:54:5,0,0,0,2,9,6,0:5:187:0,0,0,2,9,6,0:0,0,0,42,61,143,0:-7.93831,-9.44346,-24.7717,-9.44346,-24.7717,-24.7717,-9.44346,-24.7717,-24.7717,-24.7717,-6.80536,-22.1341,-22.1341,-22.1341,-21.532,-8.70816,-24.0354,-24.0354,-24.0354,-21.3998,-21.3261,0,-15.3302,-15.3302,-15.3302,-12.6929,-14.5998,-13.524,-9.44346,-24.7717,-24.7717,-24.7717,-22.1341,-24.0354,-15.3302,-24.7717 0|0:59:7,0,2,4,0,1,0,2:7:264:0,2,4,0,1,0,2:0,37,68,0,6,0,58:-1.97244,-4.07965,-25.7388,-1.8891,-23.5489,-22.9468,-0.235365,-21.8957,-19.7061,-20.6916,-4.07965,-25.7388,-23.5489,-21.8957,-25.7388,-4.06204,-25.7212,-23.5315,-21.8784,-25.7212,-25.4202,-4.07965,-25.7388,-23.5489,-21.8957,-25.7388,-25.7212,-25.7388,0,-21.6603,-19.4704,-17.8173,-21.6603,-21.6428,-21.6603,-21.0582 dDocent_Contig_5620 162 . G A 202.228 . AB=0.36;ABP=7.26639;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=30;DPB=30;DPRA=2.5;EPP=22.5536;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=326;QR=785;RO=21;RPL=9;RPP=22.5536;RPPR=48.6112;RPR=0;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:5,7:5:191:7:248:-19.0502,0,-13.9394 0/1:13:11,2:11:424:2:78:-3.49008,0,-34.5939 0/0:5:5,0:5:170:0:0:0,-1.50515,-15.6221 dDocent_Contig_5621 76 . G C 30.184 . AB=0.222222;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=20;DPB=20;DPRA=1.63636;EPP=7.35324;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=584;RO=18;RPL=2;RPP=7.35324;RPPR=42.0968;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:238:2:70:-3.93806,0,-19.0435 0/0:3:3,0:3:101:0:0:0,-0.90309,-9.42373 0/0:8:8,0:8:245:0:0:0,-2.40824,-22.3501 dDocent_Contig_5623 19 . C A 49.5876 . AB=0.333333;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=37;DPB=37;DPRA=0.387097;EPP=7.35324;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.6;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1384;RO=35;RPL=0;RPP=7.35324;RPPR=79.0118;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:4,2:4:163:2:81:-5.87955,0,-13.2522 0/0:8:8,0:8:311:0:0:0,-2.40824,-28.3513 0/0:23:23,0:23:910:0:0:0,-6.92369,-82.1344 dDocent_Contig_5624 98 . N G 9718.59 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=328;CIGAR=1X;DP=329;DPB=329;DPRA=0;EPP=715.253;EPPR=0;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.9817;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.908537;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=10788;QR=0;RO=0;RPL=328;RPP=715.253;RPPR=0;RPR=0;RUN=1;SAF=328;SAP=715.253;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:113:0,112:0:0:112:3649:-328.404,-33.7154,0 1/1:97:0,97:0:0:97:3188:-287.161,-29.1999,0 1/1:119:0,119:0:0:119:3951:-355.817,-35.8226,0 dDocent_Contig_5625 194 . C T 91.3839 . AB=0.25;ABP=11.6962;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=29;DPB=29;DPRA=2.46154;EPP=11.6962;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=977;RO=25;RPL=4;RPP=11.6962;RPPR=57.2971;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:12,4:12:471:4:161:-10.059,0,-37.9224 0/0:5:5,0:5:202:0:0:0,-1.50515,-18.5615 0/0:8:8,0:8:304:0:0:0,-2.40824,-27.7053 dDocent_Contig_5627 165 . A T 53.3529 . AB=0.230769;ABP=11.1951;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=22;DPB=22;DPRA=2.88889;EPP=9.52472;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=109;QR=691;RO=19;RPL=3;RPP=9.52472;RPPR=44.2683;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:10,3:10:364:3:109:-6.25461,0,-29.193 0/0:2:2,0:2:74:0:0:0,-0.60206,-7.02588 0/0:7:7,0:7:253:0:0:0,-2.10721,-23.1195 dDocent_Contig_5628 34 . G C 39.0128 . AB=0.157895;ABP=22.325;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=44;DPB=44;DPRA=0.38;EPP=9.52472;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1638;RO=41;RPL=0;RPP=9.52472;RPPR=92.0407;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:993:0:0:0,-7.52575,-89.6713 0/1:10:9,1:9:361:1:40:-0.985379,0,-29.8436 0/1:9:7,2:7:284:2:82:-5.07041,0,-23.2241 dDocent_Contig_5629 108 . A C 180.743 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=31;DPB=31;DPRA=2.13333;EPP=20.3821;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=261;QR=799;RO=23;RPL=0;RPP=20.3821;RPPR=52.9542;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:8,8:8:276:8:261:-18.9922,0,-20.3587 0/0:14:14,0:14:488:0:0:0,-4.21442,-44.2509 0/0:1:1,0:1:35:0:0:0,-0.30103,-3.49863 dDocent_Contig_5630 66 . G A 147.669 . AB=0.135593;ABP=139.114;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=152;DPB=152;DPRA=0;EPP=39.9253;EPPR=296.159;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.97037;PAO=0;PQA=0;PQR=0;PRO=0;QA=615;QR=5015;RO=135;RPL=17;RPP=39.9253;RPPR=296.159;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=135;SRP=296.159;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:29,6:29:1096:6:208:-8.51453,0,-88.3985 0/0:34:33,1:33:1260:1:38:0,-6.43775,-109.885 0/1:83:73,10:73:2659:10:369:-8.57112,0,-214.514 dDocent_Contig_5631 107 . N A 104.536 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_5632 41 . A C 63.1588 . AB=0.272727;ABP=7.94546;AC=1;AF=0.25;AN=4;AO=3;CIGAR=1X1M1X;DP=17;DPB=17;DPRA=1.83333;EPP=9.52472;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=547;RO=14;RPL=0;RPP=9.52472;RPPR=33.4109;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:11:8,3:8:314:3:115:-7.41266,0,-25.3136 .:.:.:.:.:.:.:. 0|0:6:6,0:6:233:0:0:0,-1.80618,-21.3358 dDocent_Contig_5633 13 . G A 348.91 . AB=0.4;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X2M1X1M1X;DP=41;DPB=41;DPRA=0;EPP=7.35324;EPPR=55.1256;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=947;RO=24;RPL=0;RPP=7.35324;RPPR=55.1256;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:16:9,0,2,5:9:355:0,2,5:0,77,200:-13.7764,-16.4857,-45.6942,-10.1737,-39.3794,-38.7773,0,-29.2171,-22.9026,-27.712 0|0:20:15,0,1,4:15:592:0,1,4:0,37,158:-8.50613,-13.0216,-61.7365,-10.0015,-58.7127,-58.4117,0,-48.7346,-45.7111,-47.5305 1|0:5:0,2,0,3:0:0:2,0,3:80,0,114:-16.3251,-9.727,-9.12494,-16.3251,-9.727,-16.3251,-6.98973,0,-6.98973,-6.08664 dDocent_Contig_5635 130 . G T 356.205 . AB=0.0685484;ABP=403.997;AC=2;AF=0.333334;AN=6;AO=17;CIGAR=1X8M;DP=248;DPB=247.889;DPRA=0;EPP=39.9253;EPPR=242.975;GTI=0;LEN=1;MEANALT=11;MQM=41.1176;MQMR=26.1746;NS=3;NUMALT=7;ODDS=0;PAIRED=0;PAIREDR=0.174603;PAO=0;PQA=0;PQR=0;PRO=0;QA=578;QR=4574;RO=126;RPL=0;RPP=39.9253;RPPR=276.616;RPR=17;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=4;SRP=242.975;SRR=122;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:76:37,7,10,3,0,4,7,3:37:1362:7,10,3,0,4,7,3:248,371,117,0,40,175,69:-9.08515,0,-61.0803,-5.95638,-48.9131,-66.1123,-10.5917,-53.5616,-59.4972,-72.8677,-20.2233,-63.1875,-69.1226,-73.7708,-83.3953,-18.8481,-61.8036,-67.7402,-72.3867,-82.0113,-80.8071,-7.67802,-50.6418,-56.5789,-61.226,-70.8512,-69.4681,-68.744,-15.7281,-58.6908,-64.6268,-69.2744,-78.8991,-77.5156,-66.3552,-77.996 0|1:78:43,2,17,10,0,1,1,1:43:1527:2,17,10,0,1,1,1:69,647,336,0,10,11,23:-12.1553,-19.4868,-76.1639,-5.65403,-57.2847,-57.7764,0,-51.6896,-37.8147,-54.2889,-25.0996,-76.7659,-62.8939,-57.2992,-82.3744,-24.7555,-76.4194,-62.548,-56.9526,-82.0278,-81.7268,-24.6694,-76.3335,-62.4621,-56.8667,-81.9419,-81.5954,-81.6409,-23.6008,-75.2668,-61.395,-55.7998,-80.8752,-80.5287,-80.4428,-80.5742 0|0:94:46,3,2,4,5,7,10,5:46:1685:3,2,4,5,7,10,5:111,63,125,123,81,390,106:-18.0968,-22.8567,-98.3071,-28.3822,-95.6483,-104.129,-22.512,-89.781,-95.3021,-97.6598,-22.8378,-90.1042,-95.6253,-89.7581,-97.682,-28.5231,-95.7768,-101.298,-95.4309,-95.7544,-102.752,0,-67.2884,-72.81,-66.9421,-67.2653,-72.9385,-73.362,-25.2568,-92.5201,-98.0411,-92.174,-92.4973,-98.1704,-69.6814,-100.098 dDocent_Contig_5636 25 . C G 67.2054 . AB=0.375;ABP=4.09604;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=21;DPB=21;DPRA=1.23077;EPP=9.52472;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.777778;PAO=0;PQA=0;PQR=0;PRO=0;QA=111;QR=722;RO=18;RPL=0;RPP=9.52472;RPPR=42.0968;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:241:0:0:0,-1.80618,-22.0669 0/1:8:5,3:5:202:3:111:-7.94225,0,-16.1538 0/0:7:7,0:7:279:0:0:0,-2.10721,-25.4802 dDocent_Contig_5637 66 . A G 56.5744 . AB=0.25;ABP=9.52472;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=2X;DP=19;DPB=19;DPRA=0.857143;EPP=9.52472;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=539;RO=14;RPL=3;RPP=9.52472;RPPR=33.4109;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:7:6,0:6:223:0:0:0,-1.80618,-20.0567 0|1:8:7,1:7:278:1:39:-1.48832,0,-22.9825 0|1:4:1,2:1:38:2:81:-6.37484,0,-2.49959 dDocent_Contig_5638 91 . T C 760.624 . AB=0.5;ABP=3.0103;AC=4;AF=0.666667;AN=6;AO=30;CIGAR=1X;DP=48;DPB=48;DPRA=0;EPP=68.1545;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=981;QR=513;RO=18;RPL=30;RPP=68.1545;RPPR=42.0968;RPR=0;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:12:0,12:0:0:12:389:-35.3226,-3.61236,0 0/1:11:6,5:6:171:5:145:-10.0248,0,-12.3613 0/1:25:12,13:12:342:13:447:-33.0338,0,-23.5338 dDocent_Contig_5639 8 . C A 182.482 . AB=0.137615;ABP=127.342;AC=2;AF=0.333334;AN=6;AO=22;CIGAR=1X2M;DP=164;DPB=164;DPRA=0;EPP=50.7827;EPPR=250.019;GTI=0;LEN=1;MEANALT=1.66667;MQM=27.0455;MQMR=59.0602;NS=3;NUMALT=2;ODDS=0;PAIRED=0.318182;PAIREDR=0.93985;PAO=0;PQA=0;PQR=0;PRO=0;QA=438;QR=5032;RO=133;RPL=0;RPP=50.7827;RPPR=291.816;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=128;SRP=250.019;SRR=5;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:56:45,8,2:45:1697:8,2:298,10:-5.47671,0,-135.362,-19.1784,-137.893,-156.141 0|1:53:40,0,13:40:1502:0,13:0,361:-15.0902,-27.1314,-150.256,0,-123.415,-119.502 0|0:55:48,0,7:48:1833:0,7:0,67:0,-14.4494,-165.106,-11.6742,-162.446,-160.339 dDocent_Contig_5640 7 . C T 6934.23 . 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C T 611.856 . AB=0.52459;ABP=3.33068;AC=3;AF=0.5;AN=6;AO=32;CIGAR=1X;DP=61;DPB=61;DPRA=0;EPP=72.4974;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=916;QR=879;RO=29;RPL=0;RPP=72.4974;RPPR=65.983;RPR=32;RUN=1;SAF=0;SAP=72.4974;SAR=32;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:7,16:7:208:16:459:-34.6644,0,-12.0898 0/1:15:10,5:10:277:5:128:-7.25943,0,-20.6871 0/1:23:12,11:12:394:11:329:-22.9784,0,-28.8545 dDocent_Contig_5644 47 . T A 42.6276 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=53;DPB=53;DPRA=0.304348;EPP=7.35324;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=1947;RO=51;RPL=0;RPP=7.35324;RPPR=113.755;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:1078:0:0:0,-8.42884,-97.3153 0/1:7:5,2:5:194:2:80:-5.48458,0,-15.7231 0/0:18:18,0:18:675:0:0:0,-5.41854,-61.0617 dDocent_Contig_5646 74 . A G 72.5508 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=41;DPB=41;DPRA=0.342857;EPP=9.52472;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=107;QR=1351;RO=38;RPL=3;RPP=9.52472;RPPR=85.5263;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:3,3:3:108:3:107:-8.1759,0,-8.2689 0/0:20:20,0:20:698:0:0:0,-6.0206,-63.1372 0/0:15:15,0:15:545:0:0:0,-4.51545,-49.3874 dDocent_Contig_5647 28 . T C 37.82 . AB=0.166667;ABP=20.3821;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=19;DPB=19;DPRA=9;EPP=9.52472;EPPR=29.6108;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.875;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.9375;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=611;RO=16;RPL=0;RPP=9.52472;RPPR=37.7539;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=15;SRP=29.6108;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:6,2:6:246:2:74:-4.61662,0,-20.1119 0/0:1:1,0:1:6:0:0:0,-0.30103,-0.599918 0/1:10:9,1:9:359:1:40:-0.985379,0,-29.6619 dDocent_Contig_5648 13 . C T 403.188 . AB=0.326531;ABP=15.8176;AC=1;AF=0.166667;AN=6;AO=22;CIGAR=2X;DP=150;DPB=150;DPRA=0;EPP=50.7827;EPPR=276.616;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.136364;PAIREDR=0.952381;PAO=0;PQA=0;PQR=0;PRO=0;QA=856;QR=4944;RO=126;RPL=0;RPP=50.7827;RPPR=276.616;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=126;SRP=276.616;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:62:58,3:58:2298:3:115:0,-8.04119,-196.264 0|0:39:36,3:36:1395:3:120:0,-0.55248,-114.623 0|1:49:32,16:32:1251:16:621:-41.5391,0,-98.1968 dDocent_Contig_5649 11 . A G 3519.91 . AB=0.115142;ABP=818.662;AC=3;AF=0.5;AN=6;AO=73;CIGAR=3M1X;DP=634;DPB=634;DPRA=0;EPP=161.528;EPPR=513.343;GTI=0;LEN=1;MEANALT=8.66667;MQM=58.0274;MQMR=59.1632;NS=3;NUMALT=5;ODDS=0;PAIRED=0.356164;PAIREDR=0.531381;PAO=0;PQA=0;PQR=0;PRO=0;QA=2867;QR=9182;RO=239;RPL=0;RPP=161.528;RPPR=521.992;RPR=73;RUN=1;SAF=73;SAP=161.528;SAR=0;SRF=238;SRP=513.343;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:189:81,44,4,24,13,18:81:3116:44,4,24,13,18:1705,142,892,482,706:-115.54,0,-242.475,-128.361,-244.157,-382.873,-68.491,-184.286,-312.643,-316.981,-100.489,-216.285,-344.641,-284.77,-352.291,-82.4296,-198.226,-326.584,-266.713,-298.711,-332.728 0|1:204:74,50,6,26,14,23:74:2829:50,6,26,14,23:1927,227,978,542,894:-135.959,0,-217.082,-139.634,-213.532,-369.959,-79.443,-153.341,-292.972,-303.747,-113.71,-187.608,-327.24,-267.049,-341.627,-84.8822,-158.78,-298.413,-238.221,-272.489,-310.091 0|1:241:84,41,16,27,25,32:84:3237:41,16,27,25,32:1580,601,1028,970,1267:-104.208,0,-251.542,-80.4403,-214.83,-339.507,-46.1379,-180.527,-260.967,-301.894,-49.7935,-184.184,-264.623,-230.321,-306.152,-26.3602,-160.751,-241.191,-206.888,-210.544,-280.612 dDocent_Contig_5650 13 . T C 2595.5 . AB=0.711864;ABP=26.0132;AC=4;AF=0.666667;AN=6;AO=77;CIGAR=1X3M;DP=94;DPB=94;DPRA=0;EPP=170.214;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=0.922078;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3095;QR=594;RO=15;RPL=0;RPP=170.214;RPPR=35.5824;RPR=77;RUN=1;SAF=77;SAP=170.214;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:35:0,0,35:0:0:0,35:0,1409:-127.063,-127.063,-127.063,-10.5361,-10.5361,0 0|1:28:7,0,21:7:277:0,21:0,845:-67.9348,-70.042,-92.8365,0,-23.1915,-16.8699 0|1:31:8,2,21:8:317:2,21:80,841:-66.8709,-62.689,-88.1765,0,-19.4968,-19.7661 dDocent_Contig_5651 7 . C T 34.8259 . AB=0;ABP=0;AC=0;AF=0;AN=6;AO=2;CIGAR=1X1M3X1M1X;DP=66;DPB=66;DPRA=0.84;EPP=7.35324;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=5;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=2372;RO=61;RPL=0;RPP=7.35324;RPPR=135.47;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:25:25,0,0:25:967:0,0:0,0:0,-7.52575,-87.3388,-7.52575,-87.3388,-87.3388 0|0:20:17,0,3:17:663:0,3:0,115:-4.70429,-9.8218,-64.3266,0,-54.8888,-53.9857 0|0:21:19,2,0:19:742:2,0:80,0:0,-5.37181,-66.1589,-5.71957,-66.7609,-67.0263 dDocent_Contig_5652 19 . T A 1437.82 . AB=0.564706;ABP=6.10145;AC=3;AF=0.5;AN=6;AO=48;CIGAR=1X;DP=85;DPB=85;DPRA=0;EPP=107.241;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1912;QR=1461;RO=37;RPL=0;RPP=107.241;RPPR=83.3548;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:5,15:5:202:15:596:-47.9552,0,-12.5413 0/1:21:15,6:15:597:6:245:-16.1078,0,-47.7448 0/1:44:17,27:17:662:27:1071:-83.4352,0,-46.6604 dDocent_Contig_5654 19 . T C 361.593 . AB=0.6;ABP=4.74748;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=31;DPB=31;DPRA=3.63636;EPP=29.068;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=475;QR=698;RO=19;RPL=0;RPP=29.068;RPPR=44.2683;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:8,12:8:293:12:475:-37.0787,0,-20.6991 0/0:2:2,0:2:76:0:0:0,-0.60206,-7.21467 0/0:9:9,0:9:329:0:0:0,-2.70927,-29.9555 dDocent_Contig_5655 12 . G A 51.183 . AB=0.142857;ABP=18.5208;AC=3;AF=0.5;AN=6;AO=2;CIGAR=1X3M;DP=52;DPB=52;DPRA=0;EPP=7.35324;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8293;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.926829;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=1583;RO=41;RPL=0;RPP=7.35324;RPPR=92.0407;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:16:12,3,0:12:460:3,0:120,0:-2.05217,0,-36.9088,-5.66453,-37.8119,-43.5075 0|1:14:12,0,2:12:466:0,2:0,82:-3.56526,-7.17762,-45.4403,0,-38.6691,-38.067 0|1:22:17,5,0:17:657:5,0:202,0:-3.18349,0,-52.8369,-8.301,-54.342,-62.3906 dDocent_Contig_5657 11 . T C 337.187 . AB=0.134503;ABP=201.427;AC=3;AF=0.5;AN=6;AO=23;CIGAR=1X9M;DP=171;DPB=171;DPRA=0;EPP=52.9542;EPPR=274.444;GTI=0;LEN=1;MEANALT=3.66667;MQM=59.2609;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.956522;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=912;QR=4894;RO=125;RPL=0;RPP=52.9542;RPPR=274.444;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=125;SRP=274.444;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:53:35,7,3,7:35:1380:7,3,7:270,118,277:-12.2818,-3.60995,-115.059,-13.1054,-107.46,-125.772,0,-94.3689,-103.877,-111.477 0|1:65:50,4,0,10:50:1950:4,0,10:149,0,396:-17.507,-23.5491,-182.631,-32.5585,-183.835,-192.865,0,-151.346,-160.375,-157.364 0|1:53:40,5,1,6:40:1564:5,1,6:192,39,239:-7.64654,-4.41292,-131.483,-16.4817,-129.783,-144.764,0,-113.308,-125.385,-126.784 dDocent_Contig_5658 54 . T A 155.704 . AB=0.158537;ABP=86.0559;AC=1;AF=0.166667;AN=6;AO=22;CIGAR=1X1M1X3M;DP=246;DPB=243.167;DPRA=0;EPP=50.7827;EPPR=428.619;GTI=0;LEN=1;MEANALT=4.33333;MQM=37.8182;MQMR=59.7653;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.887755;PAO=0;PQA=0;PQR=0;PRO=0;QA=736;QR=7490;RO=196;RPL=0;RPP=50.7827;RPPR=157.273;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=157;SRP=157.273;SRR=39;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:91:75,6,7:75:2854:6,7:201,151:0,-7.44089,-239.815,-11.2755,-230.29,-243.288 0|1:82:61,13,6:61:2349:13,6:451,194:-16.7922,0,-188.981,-19.5329,-177.274,-210.613 0|0:73:60,3,4:60:2287:3,4:84,124:0,-12.1907,-198.488,-9.20692,-190.524,-195.205 dDocent_Contig_5659 27 . G A 440.675 . AB=0.457143;ABP=3.56868;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=35;DPB=35;DPRA=0;EPP=37.7539;EPPR=36.0395;GTI=0;LEN=1;MEANALT=1;MQM=57.75;MQMR=54.9474;NS=3;NUMALT=1;ODDS=0;PAIRED=0.875;PAIREDR=0.894737;PAO=0;PQA=0;PQR=0;PRO=0;QA=638;QR=746;RO=19;RPL=0;RPP=37.7539;RPPR=44.2683;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=18;SRP=36.0395;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:7,1:7:273:1:41:-1.68633,0,-22.5261 0/1:14:3,11:3:116:11:433:-34.7503,0,-1.84204 0/1:13:9,4:9:357:4:164:-11.2365,0,-28.579 dDocent_Contig_5660 30 . G C 901.578 . AB=0.484848;ABP=3.1419;AC=3;AF=0.5;AN=6;AO=32;CIGAR=1X;DP=66;DPB=66;DPRA=0;EPP=72.4974;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.970588;PAO=0;PQA=0;PQR=0;PRO=0;QA=1252;QR=1323;RO=34;RPL=0;RPP=72.4974;RPPR=76.8404;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:11,7:11:407:7:278:-19.9713,0,-31.5475 0/1:30:18,12:18:716:12:474:-33.981,0,-55.7382 0/1:18:5,13:5:200:13:500:-39.9222,0,-12.9605 dDocent_Contig_5661 7 . C T 279.333 . AB=0.717949;ABP=19.1015;AC=2;AF=0.333333;AN=6;AO=29;CIGAR=1X;DP=51;DPB=51;DPRA=0;EPP=65.983;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=16.6207;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1118;QR=849;RO=22;RPL=0;RPP=65.983;RPPR=50.7827;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:6,18:6:225:18:692:-19.1462,0,-13.3841 0/1:15:5,10:5:195:10:387:-11.1058,0,-13.4087 0/0:12:11,1:11:429:1:39:0,-1.81574,-37.169 dDocent_Contig_5663 10 . T G 19425.5 . AB=0.708897;ABP=394.934;AC=3;AF=0.5;AN=6;AO=733;CIGAR=1X1M1X;DP=1034;DPB=1034;DPRA=0;EPP=1594.7;EPPR=227.352;GTI=0;LEN=1;MEANALT=8.33333;MQM=37.2237;MQMR=42.0435;NS=3;NUMALT=2;ODDS=0;PAIRED=0.855389;PAIREDR=0.182609;PAO=0;PQA=0;PQR=0;PRO=0;QA=28725;QR=4483;RO=115;RPL=0;RPP=1594.7;RPPR=252.73;RPR=733;RUN=1;SAF=733;SAP=1594.7;SAR=0;SRF=112;SRP=227.352;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:357:39,277,31:39:1517:277,31:10900,1221:-710.74,0,-29.387,-654.979,-45.2958,-758.391 1|0:417:49,269,73:49:1896:269,73:10470,2874:-774.435,-61.6239,-102.327,-605.877,0,-705.584 0|1:260:27,187,25:27:1070:187,25:7355,1003:-461.092,0,-15.5084,-416.406,-18.997,-480.664 dDocent_Contig_5664 111 . C T 428.455 . AB=0.315068;ABP=24.6953;AC=2;AF=0.333333;AN=6;AO=25;CIGAR=1X;DP=108;DPB=108;DPRA=0;EPP=57.2971;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.4337;NS=3;NUMALT=1;ODDS=0;PAIRED=0.28;PAIREDR=0.216867;PAO=0;PQA=0;PQR=0;PRO=0;QA=774;QR=2769;RO=83;RPL=0;RPP=57.2971;RPPR=183.243;RPR=25;RUN=1;SAF=0;SAP=57.2971;SAR=25;SRF=0;SRP=183.243;SRR=83;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:35:33,2:33:1102:2:35:0,-7.21118,-95.4077 0/1:39:24,15:24:785:15:466:-30.4967,0,-58.6646 0/1:34:26,8:26:882:8:273:-14.6676,0,-69.41 dDocent_Contig_5666 9 . T C 3383.95 . AB=0.0465116;ABP=1769.63;AC=4;AF=0.666667;AN=6;AO=46;CIGAR=2X4M1X3M1X5M;DP=989;DPB=996.875;DPRA=0;EPP=102.898;EPPR=55.1256;GTI=0;LEN=1;MEANALT=85.6667;MQM=48.7826;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0.130435;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1611;QR=940;RO=24;RPL=0;RPP=102.898;RPPR=55.1256;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:279:2,17,21,20,1:2:79:17,21,20,1:657,661,763,22:-109.163,-55.8256,-57.2095,-62.2635,-14.8251,-62.4433,-47.4389,0,-6.43843,-47.9198,-108.357,-60.9183,-67.3562,-52.5316,-114.557 1|1:409:10,15,22,26,37:10:387:15,22,26,37:569,562,940,1321:-144.095,-100.456,-127.731,-110.269,-95.4095,-135.436,-72.8745,-58.0152,-67.8279,-96.8378,-42.4412,-27.5819,-37.3949,0,-63.0933 0|1:301:12,22,29,18,8:12:474:22,29,18,8:873,1033,674,268:-88.8532,-20.8043,-53.1893,-32.6536,0,-62.9309,-39.3543,-6.70047,-18.5501,-72.9433,-71.8482,-39.1945,-51.0437,-57.7444,-108.447 dDocent_Contig_5667 27 . G A 318.325 . AB=0.428571;ABP=4.25114;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=41;DPB=41;DPRA=1.07692;EPP=29.068;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=466;QR=1086;RO=28;RPL=0;RPP=29.068;RPPR=63.8115;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:495:0:0:0,-3.91339,-44.8898 0/1:9:6,3:6:230:3:122:-8.66322,0,-18.3554 0/1:19:9,9:9:361:9:344:-25.488,0,-27.0257 dDocent_Contig_5668 37 . A G 403.415 . AB=0.146341;ABP=47.552;AC=4;AF=0.666667;AN=6;AO=6;CIGAR=2X5M1X5M1X1M1X3M1X;DP=49;DPB=49;DPRA=0;EPP=16.0391;EPPR=39.9253;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=620;RO=17;RPL=6;RPP=16.0391;RPPR=39.9253;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:8:5,0,0,2,1,0:5:187:0,0,2,1,0:0,0,57,39,0:-2.95095,-4.4561,-19.8038,-4.4561,-19.8038,-19.8038,0,-15.3007,-15.3007,-14.6987,-1.2153,-16.5928,-16.5928,-12.0922,-16.2917,-4.4561,-19.8038,-19.8038,-15.3007,-16.5928,-19.8038 1|1:27:5,0,2,7,9,4:5:185:0,2,7,9,4:0,74,275,340,154:-33.582,-35.0872,-50.2199,-29.0353,-44.1676,-43.5655,-12.7336,-27.8663,-21.8139,-25.7591,-7.22472,-22.3556,-16.3038,0,-19.6463,-22.4423,-37.5748,-31.5225,-15.22,-9.71011,-36.3706 0|1:14:7,2,0,3,0,2:7:248:2,0,3,0,2:74,0,117,0,80:-7.51234,-3.59307,-23.1696,-9.61955,-23.7717,-29.805,0,-14.1481,-20.1825,-19.2794,-9.61955,-23.7717,-29.805,-20.1825,-29.805,-3.02415,-17.1757,-23.2099,-13.5847,-23.2099,-22.6079 dDocent_Contig_5669 17 . G A 244.481 . AB=0.19697;ABP=55.6521;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=92;DPB=92;DPRA=1.26923;EPP=31.2394;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=510;QR=3161;RO=79;RPL=0;RPP=31.2394;RPPR=174.557;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:18,7:18:712:7:274:-17.4966,0,-56.8788 0/1:41:35,6:35:1412:6:236:-9.27025,0,-114.985 0/0:26:26,0:26:1037:0:0:0,-7.82678,-93.6151 dDocent_Contig_5671 91 . T C 48.321 . AB=0.181818;ABP=22.3561;AC=1;AF=0.25;AN=4;AO=4;CIGAR=1X;DP=36;DPB=36;DPRA=1.57143;EPP=11.6962;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=139;QR=1083;RO=32;RPL=4;RPP=11.6962;RPPR=72.4974;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:476:0:0:0,-4.21442,-43.1647 0/1:22:18,4:18:607:4:139:-6.23003,0,-48.3261 ./.:.:.:.:.:.:.:. dDocent_Contig_5673 102 . N C 66.44 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=5X2I1X2M1X;DP=2;DPB=2.44444;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=54;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:70:-6.63968,-0.60206,0 .:.:.:.:.:.:.:. dDocent_Contig_5674 35 . G A 459.27 . AB=0.25641;ABP=43.2104;AC=2;AF=0.333333;AN=6;AO=22;CIGAR=1X;DP=112;DPB=112;DPRA=0;EPP=50.7827;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=871;QR=3552;RO=90;RPL=0;RPP=50.7827;RPPR=198.443;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:29,16:29:1140:16:629:-43.3959,0,-89.3352 0/0:34:32,2:32:1256:2:82:0,-2.45534,-105.533 0/1:33:29,4:29:1156:4:160:-4.84981,0,-94.3836 dDocent_Contig_5675 73 . C T 45.2825 . AB=0.666667;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=27;DPB=27;DPRA=0.25;EPP=7.35324;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=881;RO=25;RPL=2;RPP=7.35324;RPPR=57.2971;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:326:0:0:0,-2.70927,-29.6855 0/0:15:15,0:15:518:0:0:0,-4.51545,-46.9468 0/1:3:1,2:1:37:2:70:-5.74431,0,-2.79474 dDocent_Contig_5676 10 . G C 36.7933 . AB=0.222222;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=2X;DP=25;DPB=25;DPRA=1.125;EPP=7.35324;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=846;RO=22;RPL=0;RPP=7.35324;RPPR=50.7827;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:9:7,2:7:270:2:77:-4.59987,0,-21.9554 0|0:11:10,0:10:387:0:0:0,-3.0103,-34.7785 0|0:5:5,0:5:189:0:0:0,-1.50515,-17.3723 dDocent_Contig_5677 107 . N T 129.46 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:140:-12.9449,-1.20412,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_5678 21 . A G 2039.83 . AB=0.446429;ABP=4.40625;AC=4;AF=0.666667;AN=6;AO=64;CIGAR=1X;DP=97;DPB=97;DPRA=0;EPP=141.985;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2543;QR=1310;RO=33;RPL=0;RPP=141.985;RPPR=74.6689;RPR=64;RUN=1;SAF=64;SAP=141.985;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:15,4:15:586:4:161:-9.1557,0,-47.3585 1/1:41:2,39:2:70:39:1537:-131.921,-5.69548,0 0/1:37:16,21:16:654:21:845:-65.2252,0,-48.0539 dDocent_Contig_5680 13 . G A 528.087 . AB=0.117647;ABP=24.5973;AC=0;AF=0;AN=6;AO=2;CIGAR=2X;DP=41;DPB=41;DPRA=2.42857;EPP=7.35324;EPPR=48.6112;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.952381;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=842;RO=21;RPL=0;RPP=7.35324;RPPR=48.6112;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:7:7,0,0:7:281:0,0:0,0:0,-2.10721,-25.6626,-2.10721,-25.6626,-25.6626 0|0:17:4,2,11:4:155:2,11:81,431:-34.2233,-28.7463,-40.8755,0,-6.03586,-9.40949 0|0:17:10,0,7:10:406:0,7:0,285:-20.904,-23.9143,-57.3983,0,-33.8901,-31.7829 dDocent_Contig_5682 36 . G A 33.1363 . AB=0.222222;ABP=9.04217;AC=1;AF=0.25;AN=4;AO=2;CIGAR=1X;DP=22;DPB=22;DPRA=0.692308;EPP=7.35324;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=782;RO=20;RPL=0;RPP=7.35324;RPPR=46.4397;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:280:2:75:-4.41032,0,-22.8619 ./.:.:.:.:.:.:.:. 0/0:13:13,0:13:502:0:0:0,-3.91339,-45.5198 dDocent_Contig_5683 10 . G A 682.021 . 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AB=0.185185;ABP=26.2531;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=2M1X4M;DP=69;DPB=66.4286;DPRA=1.92857;EPP=13.8677;EPPR=122.441;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.981818;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=2035;RO=55;RPL=0;RPP=13.8677;RPPR=122.441;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:27:20,0,5:20:727:0,5:0,195:-10.0045,-16.0251,-75.373,0,-59.3399,-57.8348 0|0:14:12,1,0:12:426:1,0:33,0:0,-0.964103,-35.3555,-3.61236,-35.6565,-38.3228 0|0:28:23,4,0:23:882:4,0:131,0:-3.84856,0,-71.4684,-10.7722,-72.6725,-83.2486 dDocent_Contig_5685 84 . A G 490.151 . 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AB=0.0461538;ABP=235.592;AC=0;AF=0;AN=6;AO=6;CIGAR=2M1X4M2X1M2X8M1X;DP=180;DPB=176.524;DPRA=0;EPP=16.0391;EPPR=63.8115;GTI=0;LEN=1;MEANALT=11;MQM=36;MQMR=60;NS=3;NUMALT=9;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=215;QR=1098;RO=28;RPL=0;RPP=16.0391;RPPR=63.8115;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:50:5,2,3,0,0,0,3,4,15,13:5:194:2,3,0,0,0,3,4,15,13:77,113,0,0,0,116,154,598,507:-73.4901,-68.7959,-84.1346,-65.7359,-75.4773,-80.7735,-74.9952,-84.7366,-81.6766,-90.9359,-74.9952,-84.7366,-81.6766,-90.9359,-90.9359,-74.9952,-84.7366,-81.6766,-90.9359,-90.9359,-90.9359,-65.4667,-75.2082,-72.1481,-81.4075,-81.4075,-81.4075,-80.5044,-62.3501,-72.0916,-69.0316,-78.291,-78.291,-78.291,-68.7624,-77.0868,-25.7399,-35.4827,-32.4224,-41.6825,-41.6825,-41.6825,-32.153,-29.0362,-37.167,-33.3192,-43.0614,-40.0013,-49.2609,-49.2609,-49.2609,-39.732,-36.6153,0,-45.3475 0|0:57:5,7,3,0,5,3,1,0,17,10:5:193:7,3,0,5,3,1,0,17,10:264,117,0,115,107,31,0,649,397:-68.5887,-48.8379,-62.5834,-60.4744,-55.0712,-75.4239,-70.0939,-64.6906,-76.3269,-85.9461,-62.6158,-57.2134,-68.8482,-78.4666,-76.9614,-62.1391,-56.736,-68.3722,-77.9913,-70.5129,-77.0882,-67.6064,-62.2032,-73.8394,-83.4586,-75.9794,-75.5038,-83.1575,-70.0939,-64.6906,-76.3269,-85.9461,-78.4666,-77.9913,-83.4586,-85.9461,-16.8413,-11.438,-23.0753,-32.6958,-25.2227,-24.7412,-30.2085,-32.6958,-27.5783,-37.4035,-32.0001,-43.6372,-53.2572,-45.7805,-45.3023,-50.7697,-53.2572,0,-50.2469 0|0:73:18,6,4,5,15,3,0,0,13,2:18:711:6,4,5,15,3,0,0,13,2:227,155,195,345,108,0,0,523,81:-37.7068,-24.8479,-81.5699,-30.3871,-70.6397,-87.7103,-27.194,-67.4471,-72.9856,-84.2168,-20.6867,-60.9308,-66.4677,-63.2758,-74.6862,-35.1207,-75.3722,-80.9105,-77.7181,-71.2001,-92.7435,-43.1253,-83.3761,-88.9144,-85.7219,-79.2017,-93.6466,-101.65,-43.1253,-83.3761,-88.9144,-85.7219,-79.2017,-93.6466,-101.65,-101.65,0,-40.2596,-45.7985,-42.6056,-36.0936,-50.5316,-58.536,-58.536,-54.6226,-36.4431,-76.6949,-82.2333,-79.0408,-72.5216,-86.9656,-94.9694,-94.9694,-51.8542,-94.3674 dDocent_Contig_5687 12 . G A 12373.1 . AB=0.084127;ABP=949.414;AC=6;AF=1;AN=6;AO=53;CIGAR=1X2M1X3M;DP=630;DPB=630;DPRA=0;EPP=118.098;EPPR=35.5824;GTI=0;LEN=1;MEANALT=12.3333;MQM=54.1509;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2068;QR=581;RO=15;RPL=0;RPP=118.098;RPPR=35.5824;RPR=53;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:205:0,140,14,16,8:0:0:140,14,16,8:5499,555,632,279:-430.592,-45.0834,-2.93923,-385.512,0,-381.298,-386.898,-1.39795,-341.818,-382.081,-408.718,-23.2136,-363.639,-365.024,-406.31 1|1:247:8,158,24,16,14:8:304:158,24,16,14:6229,925,614,543:-461.676,-50.3925,-27.7608,-388.762,0,-406.468,-418.075,-29.3179,-367.683,-438.19,-419.976,-31.2146,-369.584,-398.897,-440.693 1|1:178:7,116,15,7,11:7:277:116,15,7,11:4596,588,274,396:-348.744,-24.4326,-12.3138,-303.619,0,-321.903,-328.367,-24.7484,-303.934,-349.06,-319.902,-16.2892,-295.469,-320.217,-339.39 dDocent_Contig_5688 20 . G A 522.41 . AB=0.226415;ABP=71.9238;AC=2;AF=0.333333;AN=6;AO=26;CIGAR=1X;DP=159;DPB=159;DPRA=0;EPP=59.4686;EPPR=291.816;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.984962;PAO=0;PQA=0;PQR=0;PRO=0;QA=1033;QR=5230;RO=133;RPL=0;RPP=59.4686;RPPR=291.816;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=133;SRP=291.816;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:53:51,2:51:1987:2:80:0,-8.3628,-171.449 0/1:33:22,11:22:865:11:442:-30.2024,0,-68.225 0/1:73:60,13:60:2378:13:511:-24.3574,0,-192.197 dDocent_Contig_5689 10 . G C 41.55 . AB=0.170732;ABP=41.6201;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X2M1X3M1X1M1X;DP=91;DPB=91;DPRA=0;EPP=24.725;EPPR=168.042;GTI=0;LEN=1;MEANALT=2.66667;MQM=28;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=391;QR=2969;RO=76;RPL=0;RPP=24.725;RPPR=168.042;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:28:24,1:24:933:1:40:0,-5.0344,-81.4795 0|0:22:18,2:18:711:2:76:0,-1.04879,-59.076 0|1:41:34,7:34:1325:7:275:-5.3763,0,-107.182 dDocent_Contig_5690 12 . G A 373.531 . AB=0.377778;ABP=8.84915;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=45;DPB=45;DPRA=0;EPP=9.26925;EPPR=47.6806;GTI=0;LEN=1;MEANALT=1;MQM=54.5882;MQMR=58.4643;NS=3;NUMALT=1;ODDS=0;PAIRED=0.647059;PAIREDR=0.892857;PAO=0;PQA=0;PQR=0;PRO=0;QA=625;QR=1118;RO=28;RPL=0;RPP=39.9253;RPPR=63.8115;RPR=17;RUN=1;SAF=12;SAP=9.26925;SAR=5;SRF=26;SRP=47.6806;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:9,4:9:357:4:153:-10.2269,0,-28.5793 0/1:12:7,5:7:273:5:181:-13.0278,0,-21.1804 0/1:20:12,8:12:488:8:291:-17.8151,0,-38.2317 dDocent_Contig_5691 49 . C A 31.1365 . AB=0.128205;ABP=49.8362;AC=3;AF=0.5;AN=6;AO=5;CIGAR=1X;DP=39;DPB=39;DPRA=0;EPP=13.8677;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=189;QR=1334;RO=34;RPL=0;RPP=13.8677;RPPR=76.8404;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:15,2:15:591:2:73:-1.81256,0,-48.4119 0/1:12:10,2:10:385:2:75:-3.50798,0,-31.3905 0/1:10:9,1:9:358:1:41:-1.08427,0,-29.5726 dDocent_Contig_5692 28 . C A 127.684 . AB=0.3;ABP=9.95901;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=33;DPB=33;DPRA=0.769231;EPP=16.0391;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=47;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.166667;PAIREDR=0.962963;PAO=0;PQA=0;PQR=0;PRO=0;QA=237;QR=1051;RO=27;RPL=0;RPP=16.0391;RPPR=61.6401;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:8,1:8:315:1:41:-1.3853,0,-26.0053 0/1:11:6,5:6:226:5:196:-13.8684,0,-17.3884 0/0:13:13,0:13:510:0:0:0,-3.91339,-46.2412 dDocent_Contig_5693 22 . G A 921.237 . 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A G 37.8315 . AB=0.157895;ABP=22.325;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=34;DPB=34;DPRA=2.53333;EPP=9.52472;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=1214;RO=31;RPL=0;RPP=9.52472;RPPR=70.3259;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3,0:3:120:0:0:0,-0.90309,-11.1879 0/1:19:16,3:16:633:3:115:-5.00421,0,-51.5875 0/0:12:12,0:12:461:0:0:0,-3.61236,-41.837 dDocent_Contig_5695 12 . T C 5224.27 . AB=0.230545;ABP=651.317;AC=3;AF=0.5;AN=6;AO=237;CIGAR=1X;DP=1028;DPB=1028;DPRA=0;EPP=323.408;EPPR=1408.55;GTI=0;LEN=1;MEANALT=1.66667;MQM=55.6498;MQMR=58.8835;NS=3;NUMALT=1;ODDS=0;PAIRED=0.0126582;PAIREDR=0.0576184;PAO=0;PQA=0;PQR=0;PRO=0;QA=9422;QR=30916;RO=781;RPL=0;RPP=517.649;RPPR=1698.93;RPR=237;RUN=1;SAF=212;SAP=323.408;SAR=25;SRF=746;SRP=1408.55;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:417:318,90:318:12533:90:3568:-191.651,0,-997.549 0/1:371:285,86:285:11256:86:3389:-187.354,0,-894.086 0/1:240:178,61:178:7127:61:2465:-147.139,0,-564.744 dDocent_Contig_5696 28 . T A 88.4 . AB=0.175;ABP=39.7082;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=75;DPB=75;DPRA=0.571429;EPP=18.2106;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.485294;PAO=0;PQA=0;PQR=0;PRO=0;QA=250;QR=2275;RO=68;RPL=0;RPP=18.2106;RPPR=150.67;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:35:35,0:35:1204:0:0:0,-10.536,-108.657 0/1:34:30,4:30:968:4:144:-3.07681,0,-77.1775 0/1:6:3,3:3:103:3:106:-8.07893,0,-7.80372 dDocent_Contig_5697 51 . A G 108.675 . AB=0.272727;ABP=7.94546;AC=3;AF=0.5;AN=6;AO=4;CIGAR=1X;DP=27;DPB=27;DPRA=0.4;EPP=11.6962;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=891;RO=23;RPL=0;RPP=11.6962;RPPR=52.9542;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 0/0:15:15,0:15:579:0:0:0,-4.51545,-52.4433 0/1:11:8,3:8:312:3:118:-7.69087,0,-25.1307 dDocent_Contig_5698 14 . C T 124.869 . AB=0.225806;ABP=23.254;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=43;DPB=43;DPRA=1.29167;EPP=18.2106;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=260;QR=1443;RO=36;RPL=0;RPP=18.2106;RPPR=81.1833;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:482:0:0:0,-3.61236,-43.7318 0/1:10:8,2:8:318:2:78:-4.39317,0,-25.9754 0/1:21:16,5:16:643:5:182:-10.4123,0,-51.8805 dDocent_Contig_5699 32 . C T 269.027 . AB=0.269231;ABP=15.0369;AC=4;AF=0.666667;AN=6;AO=10;CIGAR=1X;DP=29;DPB=29;DPRA=0;EPP=24.725;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=399;QR=762;RO=19;RPL=0;RPP=24.725;RPPR=44.2683;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:9,2:9:353:2:73:-3.61874,0,-28.8183 1/1:3:0,3:0:0:3:122:-11.3725,-0.90309,0 0/1:15:10,5:10:409:5:204:-14.2286,0,-32.6551 dDocent_Contig_5700 94 . T C 105.327 . AB=0.416667;ABP=3.73412;AC=1;AF=0.25;AN=4;AO=5;CIGAR=1X;DP=22;DPB=22;DPRA=1.2;EPP=13.8677;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=169;QR=581;RO=17;RPL=5;RPP=13.8677;RPPR=39.9253;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:346:0:0:0,-3.0103,-31.4746 0/1:12:7,5:7:235:5:169:-11.9306,0,-17.8659 ./.:.:.:.:.:.:.:. dDocent_Contig_5701 43 . C A 110.191 . AB=0.238095;ABP=15.5221;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=33;DPB=33;DPRA=3.5;EPP=13.8677;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=1119;RO=28;RPL=0;RPP=13.8677;RPPR=63.8115;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3,0:3:122:0:0:0,-0.90309,-11.3725 0/1:21:16,5:16:640:5:202:-12.2402,0,-51.6129 0/0:9:9,0:9:357:0:0:0,-2.70927,-32.4911 dDocent_Contig_5702 21 . T G 52.6004 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=39;DPB=39;DPRA=0.647059;EPP=9.52472;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1430;RO=36;RPL=0;RPP=9.52472;RPPR=81.1833;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:680:0:0:0,-5.11751,-61.5279 0/1:4:2,2:2:77:2:81:-6.48161,0,-6.10502 0/0:18:17,1:17:673:1:41:0,-1.32397,-56.8014 dDocent_Contig_5703 12 . A G 193.041 . AB=0.196078;ABP=43.9277;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=51;DPB=51;DPRA=0;EPP=24.725;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=403;QR=1633;RO=41;RPL=0;RPP=24.725;RPPR=92.0407;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:12,4:12:470:4:161:-10.0588,0,-37.831 0/1:12:11,1:11:437:1:41:-0.482207,0,-36.073 0/1:23:18,5:18:726:5:201:-11.5468,0,-58.7415 dDocent_Contig_5704 11 . T C 2172.61 . AB=0.221729;ABP=306.347;AC=3;AF=0.5;AN=6;AO=100;CIGAR=1X;DP=451;DPB=451;DPRA=0;EPP=220.158;EPPR=754.34;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.99;PAIREDR=0.950867;PAO=0;PQA=0;PQR=0;PRO=0;QA=3951;QR=13806;RO=346;RPL=0;RPP=220.158;RPPR=754.34;RPR=100;RUN=1;SAF=100;SAP=220.158;SAR=0;SRF=346;SRP=754.34;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:124:100,21:100:3971:21:832:-38.4355,0,-320.63 0/1:150:111,38:111:4400:38:1487:-88.8235,0,-350.68 0/1:177:135,41:135:5435:41:1632:-93.7189,0,-435.572 dDocent_Contig_5705 40 . C T 517.219 . AB=0.395833;ABP=7.5342;AC=2;AF=0.333333;AN=6;AO=19;CIGAR=1X1M1X;DP=55;DPB=55;DPRA=3.42857;EPP=44.2683;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=753;QR=1428;RO=36;RPL=0;RPP=44.2683;RPPR=81.1833;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:20:6,14:6:230:14:556:-44.3633,0,-15.0416 0|0:7:7,0:7:272:0:0:0,-2.10721,-24.8458 0|1:28:23,5:23:926:5:197:-9.67726,0,-75.2144 dDocent_Contig_5707 10 . C T 308.024 . AB=0.213333;ABP=56.5443;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=75;DPB=75;DPRA=0;EPP=29.6108;EPPR=71.062;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.625;PAIREDR=0.847458;PAO=0;PQA=0;PQR=0;PRO=0;QA=622;QR=2279;RO=59;RPL=0;RPP=37.7539;RPPR=131.127;RPR=16;RUN=1;SAF=15;SAP=29.6108;SAR=1;SRF=51;SRP=71.062;SRR=8;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:16,4:16:583:4:163:-9.03783,0,-46.7753 0/1:21:17,4:17:657:4:158:-8.27703,0,-53.1361 0/1:34:26,8:26:1039:8:301:-17.2042,0,-83.5656 dDocent_Contig_5708 78 . A C 110.055 . AB=0.368421;ABP=5.8675;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=42;DPB=42;DPRA=6.5;EPP=20.3821;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=45.625;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=256;QR=1150;RO=34;RPL=8;RPP=20.3821;RPPR=76.8404;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:19,1:19:653:1:36:0,-4.82222,-57.8942 0/0:3:3,0:3:102:0:0:0,-0.90309,-9.51695 0/1:19:12,7:12:395:7:220:-12.2266,0,-30.1486 dDocent_Contig_5709 126 . A C 372.231 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=32;DPB=32;DPRA=1.2;EPP=29.068;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.85;PAO=0;PQA=0;PQR=0;PRO=0;QA=408;QR=730;RO=20;RPL=0;RPP=29.068;RPPR=46.4397;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:405:0:0:0,-3.31133,-36.7972 0/0:9:9,0:9:325:0:0:0,-2.70927,-29.5961 1/1:12:0,12:0:0:12:408:-37.047,-3.61236,0 dDocent_Contig_5710 176 . A C 812.618 . AB=0.516129;ABP=3.08035;AC=4;AF=0.666667;AN=6;AO=27;CIGAR=1X;DP=42;DPB=42;DPRA=0;EPP=61.6401;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1021;QR=596;RO=15;RPL=27;RPP=61.6401;RPPR=35.5824;RPR=0;RUN=1;SAF=0;SAP=61.6401;SAR=27;SRF=0;SRP=35.5824;SRR=15;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:6,10:6:234:10:372:-29,0,-16.6118 0/1:15:9,6:9:362:6:212:-14.8993,0,-28.4289 1/1:11:0,11:0:0:11:437:-39.6812,-3.31133,0 dDocent_Contig_5711 71 . C A 121.935 . AB=0.3;ABP=9.95901;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=26;DPB=26;DPRA=1.66667;EPP=16.0391;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=220;QR=747;RO=20;RPL=6;RPP=16.0391;RPPR=46.4397;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:211:0:0:0,-1.80618,-19.3293 0/1:16:13,3:13:499:3:113:-5.72282,0,-40.4411 0/1:4:1,3:1:37:3:107:-8.77789,0,-2.49371 dDocent_Contig_5713 15 . T C 132.761 . AB=0.26087;ABP=14.4341;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=32;DPB=32;DPRA=1.27778;EPP=16.0391;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=1017;RO=26;RPL=0;RPP=16.0391;RPPR=59.4686;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:11,5:11:419:5:203:-13.8366,0,-33.2389 0/0:9:9,0:9:358:0:0:0,-2.70927,-32.5799 0/1:7:6,1:6:240:1:38:-1.69006,0,-19.8679 dDocent_Contig_5715 17 . C T 403.527 . AB=0.348837;ABP=11.5447;AC=1;AF=0.166667;AN=6;AO=17;CIGAR=1X;DP=140;DPB=140;DPRA=0.958333;EPP=39.9253;EPPR=270.101;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=683;QR=4903;RO=123;RPL=0;RPP=39.9253;RPPR=270.101;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:48:48,0:48:1909:0:0:0,-14.4494,-172.017 0/1:43:28,15:28:1110:15:602:-41.5746,0,-87.2405 0/0:49:47,2:47:1884:2:81:0,-7.06474,-162.077 dDocent_Contig_5716 8 . A T 64.0847 . AB=0.107527;ABP=127.438;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=344;DPB=344;DPRA=0.995652;EPP=29.068;EPPR=721.768;GTI=0;LEN=1;MEANALT=1.5;MQM=54.9167;MQMR=59.1994;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.740181;PAO=0;PQA=0;PQR=0;PRO=0;QA=466;QR=12592;RO=331;RPL=0;RPP=29.068;RPPR=721.768;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=331;SRP=721.768;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:93:82,10:82:3099:10:389:-7.32929,0,-248.316 0/0:115:115,0:115:4379:0:0:0,-34.6184,-393.911 0/0:136:134,2:134:5114:2:77:0,-35.4685,-453.971 dDocent_Contig_5718 26 . G A 197.36 . AB=0.2;ABP=46.0055;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1M1I6M1X3M1X;DP=60;DPB=60.9167;DPRA=5.5;EPP=26.8965;EPPR=105.07;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=422;QR=1831;RO=47;RPL=0;RPP=26.8965;RPPR=105.07;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:22:16,5:16:614:5:192:-10.9229,0,-48.8655 0|0:5:4,0:4:153:0:0:0,-1.20412,-13.7773 0|1:33:27,6:27:1064:6:230:-11.1315,0,-86.1238 dDocent_Contig_5719 11 . C G 69.6652 . AB=0.0833333;ABP=39.2015;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=3M2X3M1X;DP=54;DPB=54;DPRA=1.6;EPP=7.35324;EPPR=100.727;GTI=0;LEN=1;MEANALT=3;MQM=46;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=1777;RO=45;RPL=0;RPP=7.35324;RPPR=100.727;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:24:15,3,4,2:15:589:3,4,2:48,155,78:-7.88517,-9.86421,-57.4153,0,-45.9851,-47.3609,-6.10307,-52.0462,-42.2888,-54.0279 0|0:3:3,0,0,0:3:119:0,0,0:0,0,0:0,-0.90309,-11.0954,-0.90309,-11.0954,-11.0954,-0.90309,-11.0954,-11.0954,-11.0954 0|0:27:27,0,0,0:27:1069:0,0,0:0,0,0:0,-8.12781,-96.5083,-8.12781,-96.5083,-96.5083,-8.12781,-96.5083,-96.5083,-96.5083 dDocent_Contig_5720 26 . T C 464.503 . AB=0.275362;ABP=33.2536;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=44.2683;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=762;QR=2002;RO=50;RPL=0;RPP=44.2683;RPPR=111.584;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:12,1:12:489:1:41:-0.181177,0,-40.4473 0/1:33:22,11:22:869:11:436:-29.6596,0,-68.5872 0/1:23:16,7:16:644:7:285:-19.1007,0,-51.3705 dDocent_Contig_5721 21 . G T 113.409 . AB=0.2;ABP=18.6449;AC=3;AF=0.5;AN=6;AO=5;CIGAR=1X;DP=30;DPB=30;DPRA=1.16667;EPP=13.8677;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=55;MQMR=59.64;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=1001;RO=25;RPL=0;RPP=13.8677;RPPR=57.2971;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:361:0:0:0,-2.70927,-32.853 1/1:1:0,1:0:0:1:39:-3.88923,-0.30103,0 0/1:20:16,4:16:640:4:156:-8.36954,0,-51.8756 dDocent_Contig_5723 89 . T G 299.822 . AB=0.705882;ABP=9.26925;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=43;DPB=43;DPRA=1.30769;EPP=29.068;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=400;QR=1072;RO=31;RPL=12;RPP=29.068;RPPR=70.3259;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:451:0:0:0,-3.91339,-40.9218 0/0:13:13,0:13:449:0:0:0,-3.91339,-40.7406 0/1:17:5,12:5:172:12:400:-31.204,0,-10.7008 dDocent_Contig_5724 179 . T C 163.007 . AB=0.375;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=35;DPB=35;DPRA=1.68421;EPP=16.0391;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=1153;RO=29;RPL=6;RPP=16.0391;RPPR=65.983;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:552:0:0:0,-4.21442,-50.0233 0/1:16:10,6:10:398:6:244:-17.5223,0,-31.3627 0/0:5:5,0:5:203:0:0:0,-1.50515,-18.6531 dDocent_Contig_5725 138 . C T 383.075 . AB=0.56;ABP=3.79203;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=41;DPB=41;DPRA=0.78125;EPP=33.4109;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=527;QR=1020;RO=27;RPL=0;RPP=33.4109;RPPR=61.6401;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:8,10:8:302:10:374:-28.5921,0,-22.1179 0/1:7:3,4:3:109:4:153:-12.0342,0,-8.05973 0/0:16:16,0:16:609:0:0:0,-4.81648,-55.146 dDocent_Contig_5726 119 . T G 76.336 . AB=0.307692;ABP=7.18621;AC=1;AF=0.25;AN=4;AO=4;CIGAR=1X;DP=27;DPB=27;DPRA=0.928571;EPP=11.6962;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=719;RO=23;RPL=0;RPP=11.6962;RPPR=52.9542;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:427:0:0:0,-4.21442,-38.72 ./.:.:.:.:.:.:.:. 0/1:13:9,4:9:292:4:140:-9.03154,0,-22.6794 dDocent_Contig_5727 7 . C T 137.818 . AB=0.160714;ABP=59.0033;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=117;DPB=117;DPRA=1.27273;EPP=24.725;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=389;QR=4093;RO=107;RPL=0;RPP=24.725;RPPR=235.358;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1262:0:0:0,-9.93399,-113.873 0/0:28:27,1:27:1026:1:39:0,-4.53228,-88.7517 0/1:56:47,9:47:1805:9:350:-15.0037,0,-145.842 dDocent_Contig_5728 8 . A G 443.444 . 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T C 85.9946 . AB=0.294118;ABP=9.26925;AC=3;AF=0.5;AN=6;AO=5;CIGAR=1X;DP=17;DPB=17;DPRA=0;EPP=13.8677;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=177;QR=444;RO=12;RPL=0;RPP=13.8677;RPPR=29.068;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:2:1,1:1:38:1:38:-3.19521,0,-3.19521 0/1:8:5,3:5:192:3:108:-7.66549,0,-15.2414 0/1:7:6,1:6:214:1:31:-0.992244,0,-17.4982 dDocent_Contig_5738 13 . C A 32.3433 . 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AB=0.178571;ABP=53.2644;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=94;DPB=94;DPRA=2.11111;EPP=26.8965;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=442;QR=3331;RO=83;RPL=0;RPP=26.8965;RPPR=183.243;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:19,1:19:750:1:40:0,-2.02492,-63.826 0/0:18:18,0:18:720:0:0:0,-5.41854,-65.1276 0/1:56:46,10:46:1861:10:402:-19.6817,0,-150.834 dDocent_Contig_5740 7 . C T 309.653 . 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AB=0.511364;ABP=3.109;AC=3;AF=0.5;AN=6;AO=45;CIGAR=1X;DP=88;DPB=88;DPRA=0;EPP=92.2337;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.955556;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1755;QR=1650;RO=43;RPL=2;RPP=84.1269;RPPR=96.3836;RPR=43;RUN=1;SAF=44;SAP=92.2337;SAR=1;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:21,11:21:788:11:430:-29.4172,0,-61.596 0/1:33:16,17:16:636:17:656:-49.4344,0,-47.6423 0/1:23:6,17:6:226:17:669:-53.6161,0,-13.7728 dDocent_Contig_5758 17 . T C 433.29 . AB=0.257576;ABP=36.701;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X4M;DP=85;DPB=85;DPRA=0;EPP=39.9253;EPPR=124.613;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=649;QR=2186;RO=56;RPL=0;RPP=39.9253;RPPR=124.613;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:20:16,0,4:16:629:0,4:0,155:-8.30376,-13.1202,-64.8626,0,-52.1306,-50.9265 0|1:19:16,3,0:16:615:3,0:120,0:-5.46812,0,-49.9627,-10.2846,-50.8658,-60.7533 0|1:46:24,8,13:24:942:8,13:307,494:-33.2738,-15.3002,-90.37,0,-52.2808,-73.5627 dDocent_Contig_5760 121 . C T 52.6459 . AB=0.16129;ABP=33.9012;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=65;DPB=65;DPRA=6;EPP=16.0391;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=206;QR=1924;RO=59;RPL=0;RPP=16.0391;RPPR=131.127;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=131.127;SRR=59;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:142:0:0:0,-1.50515,-13.0599 0/0:29:28,1:28:905:1:34:0,-5.33096,-78.3513 0/1:31:26,5:26:877:5:172:-6.48626,0,-69.9099 dDocent_Contig_5761 9 . G A 101.987 . AB=0.238095;ABP=15.5221;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=33;DPB=33;DPRA=3.5;EPP=13.8677;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=1076;RO=28;RPL=0;RPP=13.8677;RPPR=63.8115;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3,0:3:115:0:0:0,-0.90309,-10.7249 0/0:9:9,0:9:349:0:0:0,-2.70927,-31.7708 0/1:21:16,5:16:612:5:193:-11.4199,0,-49.0956 dDocent_Contig_5764 28 . T A 39.8031 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=24;DPB=24;DPRA=0.823529;EPP=7.35324;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=873;RO=22;RPL=0;RPP=7.35324;RPPR=50.7827;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:195:0:0:0,-1.50515,-17.9226 0/0:12:12,0:12:478:0:0:0,-3.61236,-43.3697 0/1:7:5,2:5:200:2:77:-5.20193,0,-16.2721 dDocent_Contig_5767 56 . G T 66.4385 . AB=0.217391;ABP=18.9659;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=42;DPB=42;DPRA=0.605263;EPP=13.8677;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=169;QR=1247;RO=37;RPL=5;RPP=13.8677;RPPR=83.3548;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:10,2:10:345:2:65:-2.56109,0,-27.7714 0/0:19:19,0:19:637:0:0:0,-5.71957,-57.6464 0/1:11:8,3:8:265:3:104:-6.39169,0,-20.8624 dDocent_Contig_5769 1 . N G 273.471 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=284;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 1/1:2:0,2:0:0:2:80:-7.59179,-0.60206,0 1/1:3:0,3:0:0:3:123:-11.4648,-0.90309,0 dDocent_Contig_5770 199 . G A 54.7167 . AB=0.3;ABP=6.48466;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=29;DPB=29;DPRA=1.05263;EPP=9.52472;EPPR=51.1168;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.0385;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.961538;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=936;RO=26;RPL=3;RPP=9.52472;RPPR=59.4686;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=1;SRP=51.1168;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:566:0:0:0,-4.81648,-49.0775 0/1:10:7,3:7:259:3:104:-6.69279,0,-20.6539 0/0:3:3,0:3:111:0:0:0,-0.90309,-10.3535 dDocent_Contig_5771 9 . G A 679.414 . AB=0.314607;ABP=29.5803;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X;DP=89;DPB=89;DPRA=0;EPP=63.8115;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.821429;PAIREDR=0.95082;PAO=0;PQA=0;PQR=0;PRO=0;QA=1081;QR=2308;RO=61;RPL=0;RPP=63.8115;RPPR=135.47;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:17,2:17:640:2:77:-1.58957,0,-52.2129 0/1:23:13,10:13:493:10:384:-27.9926,0,-37.7923 0/1:47:31,16:31:1175:16:620:-41.9916,0,-91.9012 dDocent_Contig_5772 35 . G A 372.076 . AB=0.319149;ABP=16.3625;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1M1X1M;DP=47;DPB=46.3333;DPRA=0;EPP=35.5824;EPPR=31.9633;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=59.7;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.733333;PAO=0;PQA=0;PQR=0;PRO=0;QA=597;QR=1173;RO=30;RPL=0;RPP=35.5824;RPPR=68.1545;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=25;SRP=31.9633;SRR=5;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:12,0,7:12:480:0,7:0,274:-19.3028,-22.9151,-62.4605,0,-39.9396,-37.8323 0|1:20:13,2,5:13:497:2,5:79,200:-12.565,-9.97882,-50.1418,0,-34.2642,-39.2617 0|1:8:5,0,3:5:196:0,3:0,123:-9.05655,-10.5617,-26.648,0,-16.4889,-15.5859 dDocent_Contig_5773 9 . G T 60.4234 . AB=0.0666667;ABP=51.9408;AC=0;AF=0;AN=6;AO=3;CIGAR=2M1X5M;DP=88;DPB=88.5;DPRA=0;EPP=9.52472;EPPR=168.042;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.855263;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=2934;RO=76;RPL=0;RPP=9.52472;RPPR=168.042;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:22:19,0,3,0:19:738:0,3,0:0,116,0:-4.19504,-9.91461,-70.5578,0,-61.0298,-60.1267,-9.91461,-70.5578,-61.0298,-70.5578 0|0:36:34,0,0,1:34:1315:0,0,1:0,0,37:0,-10.235,-118.252,-10.235,-118.252,-118.252,-7.2229,-115.225,-115.225,-114.924 0|0:30:23,4,0,2:23:881:4,0,2:137,0,78:-4.16557,0,-71.0834,-11.0893,-72.2876,-83.402,-4.66782,-65.8753,-76.9895,-76.3874 dDocent_Contig_5774 30 . T C 528.79 . AB=0.354839;ABP=8.68415;AC=4;AF=0.666667;AN=6;AO=18;CIGAR=1X;DP=38;DPB=38;DPRA=0;EPP=42.0968;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.888889;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=705;QR=808;RO=20;RPL=0;RPP=42.0968;RPPR=46.4397;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:7:0,7:0:0:7:280:-25.5713,-2.10721,0 0/1:10:7,3:7:278:3:105:-6.7813,0,-22.3802 0/1:21:13,8:13:530:8:320:-22.8451,0,-41.7244 dDocent_Contig_5775 30 . G A 167.17 . AB=0.216216;ABP=28.8919;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=61;DPB=61;DPRA=3.08333;EPP=20.3821;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9245;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.962264;PAO=0;PQA=0;PQR=0;PRO=0;QA=319;QR=2118;RO=53;RPL=0;RPP=20.3821;RPPR=118.098;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:244:0:0:0,-1.80618,-22.3388 0/0:18:18,0:18:721:0:0:0,-5.41854,-65.2156 0/1:37:29,8:29:1153:8:319:-17.9387,0,-92.9058 dDocent_Contig_5776 25 . C T 47.3225 . AB=0.166667;ABP=20.3821;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=73;DPB=73;DPRA=0;EPP=16.0391;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.970149;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=2650;RO=67;RPL=0;RPP=16.0391;RPPR=148.499;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:23,1:23:927:1:41:0,-3.13015,-79.6402 0/0:31:29,2:29:1117:2:81:0,-1.6462,-93.1282 0/1:18:15,3:15:606:3:122:-5.95395,0,-49.4575 dDocent_Contig_5778 75 . C T 45.3132 . AB=0.130435;ABP=57.5803;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=77;DPB=77;DPRA=0.741935;EPP=16.0391;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=222;QR=2628;RO=71;RPL=6;RPP=16.0391;RPPR=157.185;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1138:0:0:0,-9.33193,-102.719 0/1:20:18,2:18:688:2:76:-1.19407,0,-56.2316 0/1:26:22,4:22:802:4:146:-5.67093,0,-64.6782 dDocent_Contig_5779 20 . G A 68.4868 . AB=0.181818;ABP=22.3561;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=47;DPB=47;DPRA=1.76;EPP=11.6962;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=1665;RO=43;RPL=0;RPP=11.6962;RPPR=96.3836;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:874:0:0:0,-6.92369,-78.9672 0/1:22:18,4:18:710:4:159:-8.06909,0,-57.6047 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 dDocent_Contig_5781 34 . T C 2556.66 . AB=0;ABP=0;AC=0;AF=0;AN=6;AO=2;CIGAR=1X3M1X;DP=120;DPB=120;DPRA=0;EPP=7.35324;EPPR=70.3259;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=1194;RO=31;RPL=0;RPP=7.35324;RPPR=70.3259;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:39:0,2,0,37:0:0:2,0,37:75,0,1430:-128.596,-122.453,-121.851,-128.596,-122.453,-128.596,-11.1381,-4.62007,-11.1381,0 0|0:25:5,0,8,12:5:186:0,8,12:0,316,464:-47.4016,-48.9068,-64.1271,-22.8998,-38.1194,-35.7112,-10.8026,-26.0177,0,-22.4054 0|0:56:26,0,0,29:26:1008:0,0,29:0,0,1096:-81.9869,-89.8137,-172.632,-89.8137,-172.632,-172.632,0,-82.8119,-82.8119,-74.0821 dDocent_Contig_5782 10 . C T 155.581 . AB=0.241379;ABP=19.8579;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=68;DPB=68;DPRA=1.48718;EPP=18.2106;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.967213;PAO=0;PQA=0;PQR=0;PRO=0;QA=276;QR=2328;RO=61;RPL=0;RPP=18.2106;RPPR=135.47;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:22,7:22:830:7:276:-16.479,0,-66.2844 0/0:17:17,0:17:635:0:0:0,-5.11751,-57.4741 0/0:22:22,0:22:863:0:0:0,-6.62266,-77.9845 dDocent_Contig_5783 16 . G A 33.43 . AB=0.136364;ABP=28.2783;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=111;DPB=111;DPRA=0.409836;EPP=11.6962;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=4250;RO=107;RPL=0;RPP=11.6962;RPPR=235.358;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:27,1:27:1049:1:41:0,-4.33427,-90.6041 0/1:22:19,3:19:749:3:120:-4.56465,0,-61.1073 0/0:61:61,0:61:2452:0:0:0,-18.3628,-220.823 dDocent_Contig_5784 7 . C T 160.057 . AB=0.177419;ABP=59.0483;AC=1;AF=0.166667;AN=6;AO=26;CIGAR=1X;DP=271;DPB=271;DPRA=0;EPP=59.4686;EPPR=535.021;GTI=0;LEN=1;MEANALT=1;MQM=53.7308;MQMR=50.4735;NS=3;NUMALT=1;ODDS=0;PAIRED=0.461538;PAIREDR=0.563265;PAO=0;PQA=0;PQR=0;PRO=0;QA=972;QR=9293;RO=245;RPL=0;RPP=59.4686;RPPR=535.021;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=245;SRP=535.021;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:115:105,10:105:4003:10:379:0,-0.198023,-300.33 0/1:62:51,11:51:1919:11:424:-17.2239,0,-135.424 0/0:94:89,5:89:3371:5:169:0,-12.8026,-247.636 dDocent_Contig_5785 7 . C T 351.083 . AB=0.75;ABP=11.6962;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=2X;DP=46;DPB=46;DPRA=1.06667;EPP=29.068;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=450;QR=1298;RO=34;RPL=0;RPP=29.068;RPPR=76.8404;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:16:4,12:4:155:12:450:-36.0291,0,-9.50896 0|0:15:15,0:15:567:0:0:0,-4.51545,-51.3686 0|0:15:15,0:15:576:0:0:0,-4.51545,-52.1823 dDocent_Contig_5786 129 . A C 235.52 . AB=0.333333;ABP=5.18177;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=21;DPB=21;DPRA=1.25;EPP=22.5536;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=295;QR=417;RO=12;RPL=0;RPP=22.5536;RPPR=29.068;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=29.068;SRR=12;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:206:-18.8767,-1.80618,0 0/1:9:6,3:6:209:3:89:-5.59595,0,-16.4418 0/0:6:6,0:6:208:0:0:0,-1.80618,-19.0596 dDocent_Contig_5788 81 . A G 79.0527 . AB=0.6;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=22;DPB=22;DPRA=0.588235;EPP=9.52472;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=685;RO=19;RPL=3;RPP=9.52472;RPPR=44.2683;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:240:0:0:0,-2.10721,-21.9281 0/1:5:2,3:2:78:3:114:-9.12707,0,-5.89832 0/0:10:10,0:10:367:0:0:0,-3.0103,-33.3782 dDocent_Contig_5790 15 . A G 685.788 . AB=0.346667;ABP=18.3264;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X;DP=75;DPB=75;DPRA=0;EPP=59.4686;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1042;QR=1903;RO=49;RPL=0;RPP=59.4686;RPPR=109.412;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:18,12:18:679:12:471:-33.7044,0,-52.3904 0/1:19:14,5:14:556:5:202:-12.8425,0,-44.6609 0/1:26:17,9:17:668:9:369:-25.7487,0,-52.6204 dDocent_Contig_5791 15 . T A 1394.52 . AB=0.057971;ABP=120.112;AC=0;AF=0;AN=6;AO=4;CIGAR=1M1X2M1X;DP=161;DPB=175;DPRA=0;EPP=11.6962;EPPR=207.129;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=151;QR=3693;RO=94;RPL=0;RPP=11.6962;RPPR=207.129;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:69:18,4,10,37:18:707:4,10,37:151,285,1441:-113.068,-106.111,-163.065,-95.8776,-141.656,-151.019,0,-45.8192,-35.6004,-47.0584 0|0:43:39,0,0,4:39:1531:0,0,4:0,0,153:-1.19603,-12.9362,-138.865,-12.9362,-138.865,-138.865,0,-126.312,-126.312,-125.108 0|0:49:37,0,0,12:37:1455:0,0,12:0,0,478:-28.6209,-39.759,-159.44,-39.759,-159.44,-159.44,0,-120.078,-120.078,-116.465 dDocent_Contig_5792 9 . G A 74.7622 . AB=0.178571;ABP=28.1373;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=45;DPB=45;DPRA=3.29412;EPP=13.8677;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=183;QR=1491;RO=40;RPL=0;RPP=13.8677;RPPR=89.8692;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:23,5:23:840:5:183:-8.39686,0,-67.4825 0/0:12:12,0:12:460:0:0:0,-3.61236,-41.7501 0/0:5:5,0:5:191:0:0:0,-1.50515,-17.5581 dDocent_Contig_5793 194 . A G 127.62 . AB=0.26087;ABP=14.4341;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=28;DPB=28;DPRA=2.3;EPP=16.0391;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=236;QR=847;RO=22;RPL=6;RPP=16.0391;RPPR=50.7827;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:183:0:0:0,-1.50515,-16.8235 0/1:10:7,3:7:272:3:118:-7.99242,0,-21.8319 0/1:13:10,3:10:392:3:118:-7.08819,0,-31.7212 dDocent_Contig_5794 107 . N T 66.5172 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X2M1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 .:.:.:.:.:.:.:. dDocent_Contig_5796 8 . A G 533.34 . AB=0.291139;ABP=32.9436;AC=3;AF=0.5;AN=6;AO=23;CIGAR=1X;DP=79;DPB=79;DPRA=0;EPP=52.9542;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=58.1304;MQMR=59.6786;NS=3;NUMALT=1;ODDS=0;PAIRED=0.826087;PAIREDR=0.964286;PAO=0;PQA=0;PQR=0;PRO=0;QA=881;QR=2144;RO=56;RPL=0;RPP=52.9542;RPPR=124.613;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:17,18:17:641:18:691:-51.7966,0,-47.4878 0/1:22:19,3:19:730:3:112:-3.82364,0,-59.3665 0/1:22:20,2:20:773:2:78:-0.758836,0,-63.2757 dDocent_Contig_5797 7 . C T 128.262 . AB=0.0990099;ABP=426.189;AC=1;AF=0.166667;AN=6;AO=93;CIGAR=1X;DP=1204;DPB=1204;DPRA=0;EPP=204.957;EPPR=2359.06;GTI=0;LEN=1;MEANALT=2;MQM=53;MQMR=47.624;NS=3;NUMALT=1;ODDS=5.55112e-17;PAIRED=0.935484;PAIREDR=0.846083;PAO=0;PQA=0;PQR=0;PRO=0;QA=3537;QR=41424;RO=1085;RPL=0;RPP=204.957;RPPR=2359.06;RPR=93;RUN=1;SAF=93;SAP=204.957;SAR=0;SRF=1085;SRP=2359.06;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:364:321,29:321:12215:29:1089:0,-23.8133,-898.662 0/0:537:496,34:496:18892:34:1293:0,-50.6282,-1371.71 0/1:303:268,30:268:10317:30:1155:-14.0481,0,-738.495 dDocent_Contig_5798 7 . C T 84.865 . AB=0.10061;ABP=457.457;AC=1;AF=0.166667;AN=6;AO=63;CIGAR=1X;DP=933;DPB=933;DPRA=0;EPP=139.813;EPPR=1890.02;GTI=0;LEN=1;MEANALT=1.33333;MQM=47.0159;MQMR=46.3487;NS=3;NUMALT=1;ODDS=2.77556e-17;PAIRED=0.809524;PAIREDR=0.955121;PAO=0;PQA=0;PQR=0;PRO=0;QA=2398;QR=33117;RO=869;RPL=0;RPP=139.813;RPPR=1890.02;RPR=63;RUN=1;SAF=63;SAP=139.813;SAR=0;SRF=869;SRP=1890.02;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:328:295,33:295:11236:33:1245:-9.40732,0,-800.799 0/0:370:350,20:350:13312:20:766:0,-54.7389,-1032.18 0/0:235:224,10:224:8569:10:387:0,-41.2781,-638.757 dDocent_Contig_5799 12 . T A 259.137 . AB=0.344828;ABP=9.07545;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=40;DPB=40;DPRA=1.31818;EPP=24.725;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=392;QR=1200;RO=30;RPL=0;RPP=24.725;RPPR=68.1545;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:443:0:0:0,-3.31133,-40.2265 0/1:13:12,1:12:475:1:41:-0.181177,0,-39.1874 0/1:16:7,9:7:282:9:351:-27.1268,0,-20.935 dDocent_Contig_5800 15 . T G 69.6201 . AB=0.166667;ABP=31.9633;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=56;DPB=56;DPRA=0;EPP=16.0391;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.833333;PAIREDR=0.82;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=1985;RO=50;RPL=0;RPP=16.0391;RPPR=111.584;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:25,1:25:998:1:37:0,-4.12895,-86.4189 0/1:11:9,2:9:354:2:78:-4.09145,0,-28.9068 0/1:19:16,3:16:633:3:117:-5.18901,0,-51.5765 dDocent_Contig_5801 179 . A G 143.619 . AB=0.269231;ABP=15.0369;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=38;DPB=38;DPRA=1.08333;EPP=18.2106;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=264;QR=1200;RO=31;RPL=7;RPP=18.2106;RPPR=70.3259;RPR=0;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:450:0:0:0,-3.61236,-40.8424 0/1:12:7,5:7:276:5:184:-13.3017,0,-21.597 0/1:14:12,2:12:474:2:80:-3.37737,0,-38.7967 dDocent_Contig_5802 19 . A G 33.1661 . AB=0.2;ABP=18.6449;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=66;DPB=66;DPRA=0.769231;EPP=6.91895;EPPR=116.506;GTI=0;LEN=1;MEANALT=1.5;MQM=29.6;MQMR=58.5;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.966667;PAO=0;PQA=0;PQR=0;PRO=0;QA=177;QR=2408;RO=60;RPL=0;RPP=13.8677;RPPR=133.299;RPR=5;RUN=1;SAF=1;SAP=6.91895;SAR=4;SRF=58;SRP=116.506;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:19,1:19:757:1:40:0,-3.63133,-62.08 0/1:20:15,4:15:608:4:137:-4.53825,0,-48.9472 0/0:26:26,0:26:1043:0:0:0,-7.82678,-94.1617 dDocent_Contig_5803 28 . C T 75.3683 . AB=0.6;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=26;DPB=26;DPRA=1.35714;EPP=11.6962;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=149;QR=884;RO=22;RPL=0;RPP=11.6962;RPPR=50.7827;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:13,1:13:528:1:39:0,-0.317855,-43.97 0/1:5:2,3:2:82:3:110:-8.75585,0,-6.27453 0/0:7:7,0:7:274:0:0:0,-2.10721,-25.0265 dDocent_Contig_5804 7 . C A 341.448 . AB=0.157895;ABP=157.528;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=152;DPB=152;DPRA=0;EPP=55.1256;EPPR=278.787;GTI=0;LEN=1;MEANALT=1.33333;MQM=54.2083;MQMR=49.9921;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.375;PAIREDR=0.732283;PAO=0;PQA=0;PQR=0;PRO=0;QA=927;QR=4903;RO=127;RPL=0;RPP=55.1256;RPPR=278.787;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=127;SRP=278.787;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:52,6:52:1998:6:233:-3.67177,0,-137.881 0/1:51:41,10:41:1585:10:388:-18.9934,0,-110.904 0/1:42:34,8:34:1320:8:306:-15.1955,0,-98.7304 dDocent_Contig_5806 176 . G A 116.418 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=15;DPB=15;DPRA=0.5;EPP=9.52472;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=484;RO=12;RPL=3;RPP=9.52472;RPPR=29.068;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=29.068;SRR=12;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:239:0:0:0,-1.80618,-21.885 0/0:6:6,0:6:245:0:0:0,-1.80618,-22.4295 1/1:3:0,3:0:0:3:123:-11.4648,-0.90309,0 dDocent_Contig_5807 26 . A C 233.095 . AB=0.36;ABP=7.26639;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=29;DPB=29;DPRA=3.125;EPP=22.5536;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=59;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=360;QR=804;RO=20;RPL=0;RPP=22.5536;RPPR=46.4397;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4,0:4:159:0:0:0,-1.20412,-14.6914 0/1:15:10,5:10:400:5:199:-13.7679,0,-31.8444 0/1:10:6,4:6:245:4:161:-11.8601,0,-19.4192 dDocent_Contig_5808 91 . G C 330.601 . AB=0.298246;ABP=23.1631;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=72;DPB=72;DPRA=0;EPP=42.0968;EPPR=118.098;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=612;QR=1866;RO=53;RPL=18;RPP=42.0968;RPPR=118.098;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:2,11:2:69:11:383:-30.8916,0,-2.63927 0/0:15:14,1:14:490:1:35:0,-1.01682,-40.9321 0/1:44:37,6:37:1307:6:194:-4.47838,0,-104.628 dDocent_Contig_5809 12 . C T 36.772 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=16;DPB=16;DPRA=0.666667;EPP=7.35324;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=31;MQMR=60;NS=3;NUMALT=1;ODDS=4.33681e-19;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=558;RO=14;RPL=0;RPP=7.35324;RPPR=33.4109;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:4:2,2:2:80:2:81:-4.5977,0,-6.38767 0/0:5:5,0:5:196:0:0:0,-1.50515,-18.0143 0/0:7:7,0:7:282:0:0:0,-2.10721,-25.7526 dDocent_Contig_5810 37 . C T 513.31 . AB=0.365385;ABP=11.1951;AC=2;AF=0.333333;AN=6;AO=19;CIGAR=1X;DP=53;DPB=53;DPRA=26;EPP=44.2683;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.941176;PAO=0;PQA=0;PQR=0;PRO=0;QA=762;QR=1365;RO=34;RPL=0;RPP=44.2683;RPPR=76.8404;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:16,14:16:639:14:563:-41.981,0,-48.8106 0/1:22:17,5:17:685:5:199:-11.6659,0,-55.3576 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_5811 108 . A C 70.6419 . AB=0.492063;ABP=3.04477;AC=2;AF=0.333333;AN=6;AO=45;CIGAR=1X;DP=110;DPB=110;DPRA=0;EPP=100.727;EPPR=139.813;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=425;QR=777;RO=63;RPL=0;RPP=100.727;RPPR=139.813;RPR=45;RUN=1;SAF=0;SAP=100.727;SAR=45;SRF=0;SRP=139.813;SRR=63;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:14,16:14:170:16:178:-7.09982,0,-6.39035 0/1:33:17,15:17:188:15:132:-2.26385,0,-7.32522 0/0:47:32,14:32:419:14:115:0,-3.48609,-27.4041 dDocent_Contig_5812 4 . G C 42.1351 . AB=0.126761;ABP=88.9211;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=95;DPB=95;DPRA=5.91667;EPP=22.5536;EPPR=185.414;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=289;QR=2787;RO=84;RPL=0;RPP=22.5536;RPPR=185.414;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=185.414;SRR=84;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:388:0:0:0,-3.61236,-35.2328 0/0:12:12,0:12:401:0:0:0,-3.61236,-36.4121 0/1:71:60,9:60:1998:9:289:-5.43533,0,-159.242 dDocent_Contig_5813 53 . G T 100.671 . AB=0.363636;ABP=4.78696;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=35;DPB=35;DPRA=0.916667;EPP=11.6962;EPPR=61.9202;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.9355;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=1198;RO=31;RPL=4;RPP=11.6962;RPPR=61.9202;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:468:0:0:0,-3.61236,-42.4679 0/1:11:7,4:7:255:4:158:-11.2889,0,-18.6901 0/0:12:12,0:12:475:0:0:0,-3.61236,-43.101 dDocent_Contig_5815 9 . C T 645.599 . AB=0.386667;ABP=11.3777;AC=3;AF=0.5;AN=6;AO=29;CIGAR=1X;DP=75;DPB=75;DPRA=0;EPP=65.983;EPPR=71.1757;GTI=0;LEN=1;MEANALT=1;MQM=39.6552;MQMR=54.7609;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.172414;PAIREDR=0.891304;PAO=0;PQA=0;PQR=0;PRO=0;QA=1113;QR=1758;RO=46;RPL=0;RPP=65.983;RPPR=102.898;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=42;SRP=71.1757;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:15,10:15:564:10:386:-25.64,0,-39.1318 0/1:10:6,4:6:231:4:154:-9.06281,0,-18.1476 0/1:40:25,15:25:963:15:573:-33.5738,0,-68.7026 dDocent_Contig_5816 111 . G A 39.2384 . AB=0.181818;ABP=22.3561;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=57;DPB=57;DPRA=1.25714;EPP=11.6962;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=124;QR=1584;RO=53;RPL=0;RPP=11.6962;RPPR=118.098;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=118.098;SRR=53;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:18,4:18:509:4:124:-4.84459,0,-39.4624 0/0:8:8,0:8:189:0:0:0,-2.40824,-17.2435 0/0:27:27,0:27:886:0:0:0,-8.12781,-80.0459 dDocent_Contig_5817 22 . A T 1415.28 . AB=0.322034;ABP=51.7028;AC=3;AF=0.5;AN=6;AO=57;CIGAR=1X;DP=177;DPB=177;DPRA=0;EPP=110.022;EPPR=252.803;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.9474;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.912281;PAIREDR=0.983193;PAO=0;PQA=0;PQR=0;PRO=0;QA=2196;QR=4537;RO=119;RPL=0;RPP=126.784;RPPR=261.416;RPR=57;RUN=1;SAF=55;SAP=110.022;SAR=2;SRF=118;SRP=252.803;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:24,10:24:926:10:390:-25.2212,0,-73.4166 0/1:64:44,20:44:1664:20:783:-51.5264,0,-130.752 0/1:79:51,27:51:1947:27:1023:-68.4971,0,-151.584 dDocent_Contig_5818 9 . C T 61.8392 . AB=0.210526;ABP=16.8392;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=48;DPB=48;DPRA=1.31034;EPP=11.6962;EPPR=74.2741;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.3182;NS=3;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=0.704545;PAO=0;PQA=0;PQR=0;PRO=0;QA=142;QR=1660;RO=44;RPL=0;RPP=11.6962;RPPR=98.5551;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=41;SRP=74.2741;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:557:0:0:0,-4.51545,-50.3489 0/1:19:15,4:15:575:4:142:-7.40577,0,-46.1428 0/0:14:14,0:14:528:0:0:0,-4.21442,-47.7909 dDocent_Contig_5820 1 . N G 581.189 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=36;CIGAR=1X;DP=36;DPB=36;DPRA=0;EPP=81.1833;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=18.5278;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1215;QR=0;RO=0;RPL=0;RPP=81.1833;RPPR=0;RPR=36;RUN=1;SAF=0;SAP=81.1833;SAR=36;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:13:0,13:0:0:13:451:-24.5989,-3.91339,0 1/1:10:0,10:0:0:10:317:-14.7783,-3.0103,0 1/1:13:0,13:0:0:13:447:-18.2646,-3.91339,0 dDocent_Contig_5822 12 . G A 79.4209 . AB=0.121019;ABP=198.872;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=157;DPB=157;DPRA=0;EPP=44.2683;EPPR=39.2644;GTI=0;LEN=1;MEANALT=1;MQM=59.7895;MQMR=59.2826;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0;PAIREDR=0.304348;PAO=0;PQA=0;PQR=0;PRO=0;QA=643;QR=5071;RO=138;RPL=0;RPP=44.2683;RPPR=302.673;RPR=19;RUN=1;SAF=0;SAP=44.2683;SAR=19;SRF=45;SRP=39.2644;SRR=93;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:83:74,9:74:2676:9:312:-3.42989,0,-216.06 0/1:36:30,6:30:1130:6:188:-6.39009,0,-91.1545 0/1:38:34,4:34:1265:4:143:-1.78157,0,-100.856 dDocent_Contig_5823 11 . T C 47.0409 . AB=0.181818;ABP=22.3561;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=27;DPB=27;DPRA=2.2;EPP=11.6962;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.25;PAIREDR=0.956522;PAO=0;PQA=0;PQR=0;PRO=0;QA=143;QR=908;RO=23;RPL=0;RPP=11.6962;RPPR=52.9542;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:12,3:12:467:3:102:-4.99953,0,-37.8596 0/0:5:5,0:5:205:0:0:0,-1.50515,-18.835 0/1:7:6,1:6:236:1:41:-1.98736,0,-19.5042 dDocent_Contig_5824 13 . T A 3023.09 . AB=0.0651341;ABP=431.722;AC=0;AF=0;AN=6;AO=17;CIGAR=1X1M1X;DP=261;DPB=261;DPRA=0;EPP=39.9253;EPPR=296.159;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.941176;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=679;QR=5394;RO=135;RPL=0;RPP=39.9253;RPPR=296.159;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=135;SRP=296.159;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:54:23,5,26:23:919:5,26:201,1026:-77.4836,-67.8419,-142.033,0,-59.1274,-67.8652 0|0:84:30,5,49:30:1203:5,49:201,1905:-147.466,-139.931,-237.547,0,-82.5507,-84.3647 0|0:123:82,7,33:82:3272:7,33:277,1287:-81.0761,-82.9629,-350.331,0,-246.674,-259.537 dDocent_Contig_5825 1 . N G 1218.18 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=55;CIGAR=1X;DP=55;DPB=55;DPRA=0;EPP=122.441;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=30.2182;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1840;QR=0;RO=0;RPL=0;RPP=122.441;RPPR=0;RPR=55;RUN=1;SAF=0;SAP=122.441;SAR=55;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:14:0,14:0:0:14:427:-35.3936,-4.21442,0 1/1:24:0,24:0:0:24:821:-45.5807,-7.22472,0 1/1:17:0,17:0:0:17:592:-40.3665,-5.11751,0 dDocent_Contig_5826 87 . A T 341.203 . AB=0.210526;ABP=72.1546;AC=2;AF=0.333333;AN=6;AO=21;CIGAR=1X;DP=126;DPB=126;DPRA=0;EPP=48.6112;EPPR=231.015;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=749;QR=3584;RO=105;RPL=21;RPP=48.6112;RPPR=231.015;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:30,1:30:1021:1:34:0,-5.93302,-88.8002 0/1:55:40,15:40:1373:15:535:-31.9281,0,-107.313 0/1:40:35,5:35:1190:5:180:-4.51087,0,-95.362 dDocent_Contig_5827 175 . G A 55.6081 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=31;DPB=31;DPRA=0.296296;EPP=7.35324;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1134;RO=29;RPL=2;RPP=7.35324;RPPR=65.983;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:4:2,2:2:73:2:81:-6.48161,0,-5.72507 0/0:11:11,0:11:430:0:0:0,-3.31133,-39.051 0/0:16:16,0:16:631:0:0:0,-4.81648,-57.1224 dDocent_Contig_5828 25 . C A 67.8088 . AB=0.190476;ABP=20.4855;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=81;DPB=81;DPRA=0.7;EPP=11.6962;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=3064;RO=77;RPL=0;RPP=11.6962;RPPR=170.214;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:40,0:40:1594:0:0:0,-12.0412,-143.696 0/1:21:17,4:17:674:4:155:-8.00273,0,-54.6685 0/0:20:20,0:20:796:0:0:0,-6.0206,-71.959 dDocent_Contig_5829 38 . T C 120.417 . AB=0;ABP=0;AC=0;AF=0;AN=6;AO=4;CIGAR=2X1M1X1M1X6M1X;DP=33;DPB=33;DPRA=2;EPP=11.6962;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=6;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=24;QR=731;RO=19;RPL=0;RPP=11.6962;RPPR=44.2683;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:16:12,0,0,4,0:12:461:0,0,4,0:0,0,24,0:0,-3.61236,-41.7145,-3.61236,-41.7145,-41.7145,-3.49463,-41.7195,-41.7195,-40.5154,-3.61236,-41.7145,-41.7145,-41.7195,-41.7145 0|0:8:6,2,0,0,0:6:230:2,0,0,0:75,0,0,0:0,-1.26875,-19.9264,-1.80618,-20.5284,-20.9251,-1.80618,-20.5284,-20.9251,-20.9251,-1.80618,-20.5284,-20.9251,-20.9251,-20.9251 0|0:9:1,0,3,0,4:1:40:0,3,0,4:0,18,0,162:-13.2387,-13.5397,-16.8544,-13.5906,-16.8964,-15.9933,-13.5397,-16.8544,-16.8964,-16.8544,0,-3.36664,-3.42156,-3.36664,-2.16252 dDocent_Contig_5830 11 . A G 102.503 . AB=0.363636;ABP=4.78696;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=30;DPB=30;DPRA=1.15789;EPP=11.6962;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=1042;RO=26;RPL=0;RPP=11.6962;RPPR=59.4686;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:326:0:0:0,-2.40824,-29.7099 0/0:11:11,0:11:443:0:0:0,-3.31133,-40.2259 0/1:11:7,4:7:273:4:160:-11.4721,0,-21.6224 dDocent_Contig_5832 35 . C T 85.3554 . AB=0.235294;ABP=13.3567;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=51;DPB=51;DPRA=1;EPP=11.6962;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=1874;RO=47;RPL=0;RPP=11.6962;RPPR=105.07;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:815:0:0:0,-6.0206,-73.664 0/1:17:13,4:13:520:4:161:-9.75739,0,-42.0291 0/0:14:14,0:14:539:0:0:0,-4.21442,-48.8329 dDocent_Contig_5833 9 . C T 292.219 . AB=0.44;ABP=3.79203;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=69;DPB=69;DPRA=1.13636;EPP=26.8965;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=418;QR=2216;RO=58;RPL=0;RPP=26.8965;RPPR=128.956;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1174:0:0:0,-9.33193,-105.959 0/1:25:14,11:14:540:11:418:-30.4438,0,-41.4198 0/0:13:13,0:13:502:0:0:0,-3.91339,-45.5285 dDocent_Contig_5834 30 . A G 82.009 . AB=0.15;ABP=45.5712;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1M1I3M1X;DP=48;DPB=49.2;DPRA=2.5;EPP=16.0391;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=1667;RO=42;RPL=0;RPP=16.0391;RPPR=94.2121;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:14:11,3:11:437:3:120:-6.97289,0,-35.471 0|0:8:8,0:8:319:0:0:0,-2.40824,-29.0778 0|1:26:23,3:23:911:3:122:-3.54571,0,-74.4708 dDocent_Contig_5837 174 . A G 1397.82 . AB=0.510417;ABP=3.10078;AC=3;AF=0.5;AN=6;AO=49;CIGAR=1X;DP=96;DPB=96;DPRA=0;EPP=109.412;EPPR=102.898;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1903;QR=1765;RO=46;RPL=49;RPP=109.412;RPPR=102.898;RPR=0;RUN=1;SAF=0;SAP=109.412;SAR=49;SRF=0;SRP=102.898;SRR=46;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:28,9:28:1058:9:339:-19.5668,0,-84.223 0/1:20:14,6:14:547:6:239:-15.8633,0,-43.5448 0/1:38:4,34:4:160:34:1325:-108.067,0,-3.34378 dDocent_Contig_5838 1 . N G 49.4466 . AB=0;ABP=0;AC=2;AF=0.5;AN=4;AO=2;CIGAR=1X;DP=3;DPB=3;DPRA=2;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=24;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=66;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:0,0:0:0:0:0:0,0,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:66:-4.46035,-0.60206,0 dDocent_Contig_5839 55 . T C 294.098 . AB=0.205882;ABP=54.1038;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=174;DPB=174;DPRA=1.28302;EPP=33.4109;EPPR=350.446;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=564;QR=6400;RO=160;RPL=14;RPP=33.4109;RPPR=350.446;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=160;SRP=350.446;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:45:45,0:45:1794:0:0:0,-13.5463,-161.67 0/0:61:61,0:61:2422:0:0:0,-18.3628,-218.127 0/1:68:54,14:54:2184:14:564:-30.6317,0,-176.255 dDocent_Contig_5840 9 . C T 67.6836 . AB=0.151515;ABP=37.8197;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=109;DPB=109;DPRA=0.868421;EPP=13.8677;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=56.5673;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.826923;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=3969;RO=104;RPL=0;RPP=13.8677;RPPR=228.843;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:41,0:41:1551:0:0:0,-12.3422,-125.147 0/1:33:28,5:28:1066:5:195:-7.99021,0,-85.1966 0/0:35:35,0:35:1352:0:0:0,-10.536,-121.964 dDocent_Contig_5841 64 . A G 243.258 . AB=0.307692;ABP=15.538;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=54;DPB=54;DPRA=1.3;EPP=29.068;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=419;QR=1506;RO=42;RPL=12;RPP=29.068;RPPR=94.2121;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:521:0:0:0,-4.51545,-47.2143 0/1:30:22,8:22:807:8:285:-16.9634,0,-63.925 0/1:9:5,4:5:178:4:134:-9.68119,0,-13.6586 dDocent_Contig_5842 10 . A G 399.498 . AB=0.136364;ABP=154.619;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=4M1X3M;DP=132;DPB=129;DPRA=0;EPP=42.0968;EPPR=211.472;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=699;QR=3692;RO=96;RPL=0;RPP=42.0968;RPPR=211.472;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:38:14,12,7,4:14:541:12,7,4:452,274,159:-32.8229,0,-40.8258,-14.5032,-21.9065,-56.8368,-23.9433,-31.3454,-45.851,-67.1787 0|1:63:57,0,6,0:57:2181:0,6,0:0,227,0:-1.82726,-18.986,-197.959,0,-179.352,-177.546,-18.986,-197.959,-179.352,-197.959 0|1:31:25,0,5,0:25:970:0,5,0:0,198,0:-8.96561,-16.4914,-96.2136,0,-79.9159,-78.4107,-16.4914,-96.2136,-79.9159,-96.2136 dDocent_Contig_5843 10 . A T 502.11 . AB=0.221154;ABP=73.2491;AC=1;AF=0.166667;AN=6;AO=32;CIGAR=1X;DP=262;DPB=262;DPRA=0;EPP=72.4974;EPPR=502.449;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8609;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.991304;PAO=0;PQA=0;PQR=0;PRO=0;QA=1268;QR=9097;RO=230;RPL=0;RPP=72.4974;RPPR=502.449;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=230;SRP=502.449;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:90:84,6:84:3330:6:233:0,-5.75438,-278.123 0/0:68:65,3:65:2559:3:119:0,-9.37502,-219.36 0/1:104:81,23:81:3208:23:916:-51.4328,0,-257.49 dDocent_Contig_5844 7 . C A 194.613 . AB=0.227273;ABP=31.4368;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=59;DPB=59;DPRA=1.46667;EPP=24.725;EPPR=92.7497;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.7347;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.632653;PAO=0;PQA=0;PQR=0;PRO=0;QA=381;QR=1842;RO=49;RPL=0;RPP=24.725;RPPR=109.412;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=47;SRP=92.7497;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:15,6:15:546:6:229:-14.6541,0,-43.0372 0/1:23:19,4:19:722:4:152:-7.12594,0,-57.892 0/0:15:15,0:15:574:0:0:0,-4.51545,-51.9977 dDocent_Contig_5845 21 . A T 252.658 . AB=0.288889;ABP=20.4303;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=45;DPB=45;DPRA=0;EPP=31.2394;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=461;QR=1237;RO=32;RPL=0;RPP=31.2394;RPPR=72.4974;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:5,4:5:196:4:147:-10.88,0,-15.3053 0/1:12:7,5:7:265:5:180:-12.9389,0,-20.5983 0/1:24:20,4:20:776:4:134:-5.16358,0,-62.9374 dDocent_Contig_5846 18 . C A 1659.97 . AB=0.467742;ABP=3.57068;AC=4;AF=0.666667;AN=6;AO=53;CIGAR=1X;DP=87;DPB=87;DPRA=0;EPP=118.098;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.939394;PAO=0;PQA=0;PQR=0;PRO=0;QA=2110;QR=1321;RO=33;RPL=0;RPP=118.098;RPPR=74.6689;RPR=53;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:15,22:15:604:22:873:-67.631,0,-43.4421 0/1:24:17,7:17:676:7:280:-18.3468,0,-53.9401 1/1:25:1,24:1:41:24:957:-82.3381,-3.43118,0 dDocent_Contig_5847 25 . C A 4342.55 . AB=0.154412;ABP=285.174;AC=1;AF=0.166667;AN=6;AO=42;CIGAR=1M1I1X3M;DP=272;DPB=315.2;DPRA=0;EPP=94.2121;EPPR=68.1545;GTI=0;LEN=1;MEANALT=6.33333;MQM=25.3333;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1043;QR=1182;RO=30;RPL=0;RPP=94.2121;RPPR=68.1545;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:127:10,29,0,74,5:10:386:29,0,74,5:740,0,2524,200:-209.298,-161.625,-184.6,-212.309,-193.33,-244.014,-18.9277,0,-50.652,-28.3758,-195.829,-176.851,-227.535,-34.1642,-226.03 0|0:49:0,6,4,35,0:0:0:6,4,35,0:135,158,1183,0:-102.95,-94.2393,-92.4332,-91.5308,-82.8208,-90.3267,-11.4462,-2.77909,0,-0.910143,-102.95,-94.2393,-91.5308,-11.4462,-102.95 0|0:96:20,7,1,55,6:20:796:7,1,55,6:168,39,1747,244:-125.19,-120.097,-183.551,-128.373,-182.82,-193.633,0,-54.4865,-62.7421,-49.023,-111.076,-165.526,-173.802,-45.4449,-174.834 dDocent_Contig_5849 13 . A C 809.103 . AB=0.309859;ABP=47.6019;AC=4;AF=0.666667;AN=6;AO=44;CIGAR=1X9M;DP=142;DPB=140.6;DPRA=0;EPP=98.5551;EPPR=63.8115;GTI=0;LEN=1;MEANALT=5.33333;MQM=22.1818;MQMR=59.6786;NS=3;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=0.857143;PAO=0;PQA=0;PQR=0;PRO=0;QA=976;QR=1104;RO=28;RPL=0;RPP=98.5551;RPPR=63.8115;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:56:15,0,3,19,2,12:15:586:0,3,19,2,12:0,51,417,52,260:-22.4784,-26.9939,-75.2114,-24.1083,-72.3279,-71.4249,0,-48.2485,-45.3704,-42.529,-23.4544,-71.6746,-68.7914,-44.7134,-71.0726,-10.4276,-58.6606,-55.7799,-31.7204,-55.1247,-55.0483 0|1:54:12,0,3,14,3,22:12:478:0,3,14,3,22:0,57,294,77,453:-24.6139,-28.2263,-67.6371,-24.8063,-64.2196,-63.3165,-9.72148,-49.1492,-45.7346,-44.9348,-22.7351,-62.1498,-58.7325,-43.663,-61.2467,0,-39.4421,-36.0315,-21.0033,-33.9582,-32.8195 1|1:32:1,2,0,12,7,10:1:40:2,0,12,7,10:82,0,233,281,263:-37.5347,-37.1893,-39.8875,-37.8357,-40.4895,-41.136,-23.7108,-26.378,-27.0119,-23.3996,-14.6864,-17.3432,-17.9901,-3.84842,-15.8829,-19.8721,-22.5342,-23.1747,-9.0985,0,-20.1644 dDocent_Contig_5850 87 . T A 39.6401 . AB=0.142857;ABP=34.0313;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=74;DPB=74;DPRA=1.21739;EPP=11.6962;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=144;QR=2411;RO=70;RPL=4;RPP=11.6962;RPPR=155.013;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:24,4:24:818:4:144:-4.88478,0,-65.5055 0/0:11:11,0:11:381:0:0:0,-3.31133,-34.6237 0/0:35:35,0:35:1212:0:0:0,-10.536,-109.386 dDocent_Contig_5851 95 . C T 275.643 . AB=0.55;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=46;DPB=46;DPRA=1.26923;EPP=29.068;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=417;QR=1118;RO=34;RPL=12;RPP=29.068;RPPR=76.8404;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:12,1:12:385:1:34:0,-0.514479,-31.5616 0/0:13:13,0:13:448:0:0:0,-3.91339,-40.65 0/1:20:9,11:9:285:11:383:-28.7844,0,-19.9395 dDocent_Contig_5852 21 . G T 63.0486 . AB=0.3;ABP=6.48466;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=40;DPB=40;DPRA=0.666667;EPP=9.52472;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.891892;PAO=0;PQA=0;PQR=0;PRO=0;QA=113;QR=1483;RO=37;RPL=0;RPP=9.52472;RPPR=83.3548;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:239:0:0:0,-1.80618,-21.8848 0/0:24:24,0:24:959:0:0:0,-7.22472,-86.6149 0/1:10:7,3:7:285:3:113:-7.52662,0,-23.0141 dDocent_Contig_5853 8 . A G 276.959 . AB=0.0909091;ABP=34.9902;AC=0;AF=0;AN=6;AO=2;CIGAR=3M1X2M1X2M1X;DP=52;DPB=51.6;DPRA=1.69231;EPP=7.35324;EPPR=83.3548;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=72;QR=1432;RO=37;RPL=0;RPP=7.35324;RPPR=83.3548;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:17:14,3,0,0:14:540:3,0,0:111,0,0:-5.2003,0,-43.8266,-9.41472,-44.7296,-53.7729,-9.41472,-44.7296,-53.7729,-53.7729 0|0:22:11,0,2,9:11:426:0,2,9:0,72,355:-24.8108,-28.1221,-63.1235,-22.2514,-57.2512,-56.6492,0,-35.0192,-29.1489,-32.31 0|0:13:12,1,0,0:12:466:1,0,0:37,0,0:0,-0.215561,-38.5928,-3.61236,-38.8938,-41.9194,-3.61236,-38.8938,-41.9194,-41.9194 dDocent_Contig_5854 7 . C T 890.664 . AB=0.411765;ABP=8.75832;AC=3;AF=0.5;AN=6;AO=35;CIGAR=1X4M;DP=85;DPB=85;DPRA=0;EPP=79.0118;EPPR=102.898;GTI=0;LEN=1;MEANALT=2;MQM=59.8;MQMR=59.3043;NS=3;NUMALT=2;ODDS=0;PAIRED=0.457143;PAIREDR=0.956522;PAO=0;PQA=0;PQR=0;PRO=0;QA=1298;QR=1752;RO=46;RPL=0;RPP=79.0118;RPPR=102.898;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:26:15,2,8:15:572:2,8:75,303:-20.3254,-18.6983,-64.8723,0,-40.6333,-44.3679 0|1:19:2,0,17:2:76:0,17:0,633:-51.5815,-52.1835,-58.4172,0,-6.61261,-1.4951 0|1:40:29,0,10:29:1104:0,10:0,362:-20.7735,-29.5034,-120.066,0,-90.5239,-87.5136 dDocent_Contig_5855 114 . G A 308.634 . 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C T 167.148 . AB=0.5;ABP=3.0103;AC=3;AF=0.5;AN=6;AO=6;CIGAR=1X2I2M2I3M1X;DP=10;DPB=15.7143;DPRA=4.5;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1.5;MQM=13.5;MQMR=0;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=206;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:6:0,3,3:0:0:3,3:103,100:-10.84,-7.79694,-6.89385,-3.27295,0,-2.36986 1|1:3:0,3,0:0:0:3,0:103,0:-3.35223,-0.90309,0,-3.35223,-0.90309,-3.35223 0|0:1:0,0,1:0:0:0,1:0,35:-3.42101,-3.42101,-3.42101,-0.30103,-0.30103,0 dDocent_Contig_5857 10 . T C 77.8893 . AB=0.12;ABP=97.0785;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=241;DPB=241;DPRA=0;EPP=29.068;EPPR=500.277;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.833333;PAIREDR=0.995633;PAO=0;PQA=0;PQR=0;PRO=0;QA=466;QR=9063;RO=229;RPL=0;RPP=29.068;RPPR=500.277;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=229;SRP=500.277;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:87:85,2:85:3341:2:78:0,-18.7863,-293.354 0/1:75:66,9:66:2598:9:347:-9.01078,0,-211.391 0/0:79:78,1:78:3124:1:41:0,-19.6868,-277.137 dDocent_Contig_5858 32 . T A 2377.03 . AB=0.6;ABP=8.65613;AC=4;AF=0.666667;AN=6;AO=77;CIGAR=1X1M;DP=105;DPB=105;DPRA=0;EPP=145.171;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.987;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.623377;PAIREDR=0.884615;PAO=0;PQA=0;PQR=0;PRO=0;QA=2949;QR=1019;RO=26;RPL=0;RPP=170.214;RPPR=59.4686;RPR=77;RUN=1;SAF=74;SAP=145.171;SAR=3;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:31:11,2,18:11:429:2,18:77,693:-53.584,-50.573,-85.235,0,-28.9447,-29.8478 0|1:34:13,0,21:13:517:0,21:0,834:-65.1379,-69.0513,-111.618,0,-42.9641,-36.6424 1|1:40:2,0,38:2:73:0,38:0,1422:-121.3,-121.902,-127.866,-5.1101,-11.4391,0 dDocent_Contig_5859 17 . C T 73.7814 . AB=0.147059;ABP=39.7976;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=66;DPB=66;DPRA=2.125;EPP=13.8677;EPPR=103.005;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=47.2459;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.540984;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=2344;RO=61;RPL=0;RPP=13.8677;RPPR=135.47;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=57;SRP=103.005;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:533:0:0:0,-4.21442,-43.3085 0/0:18:18,0:18:682:0:0:0,-5.41854,-55.4458 0/1:34:29,5:29:1129:5:205:-8.59999,0,-81.8193 dDocent_Contig_5860 20 . A G 249.161 . 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AB=0.333333;ABP=5.9056;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=35;DPB=35;DPRA=1.04348;EPP=11.6962;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=1196;RO=31;RPL=4;RPP=11.6962;RPPR=70.3259;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3,0:3:89:0:0:0,-0.90309,-8.29756 0/0:20:20,0:20:784:0:0:0,-6.0206,-70.8831 0/1:12:8,4:8:323:4:163:-11.4461,0,-25.8268 dDocent_Contig_5862 9 . A G 13235.5 . 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C T 281.122 . AB=0.265306;ABP=26.4533;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=70;DPB=70;DPRA=0;EPP=33.4109;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.928571;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=533;QR=2136;RO=56;RPL=0;RPP=33.4109;RPPR=124.613;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:14,5:14:538:5:184:-11.1982,0,-43.0454 0/1:30:22,8:22:835:8:310:-19.2327,0,-66.4424 0/0:21:20,1:20:763:1:39:0,-2.42507,-65.1011 dDocent_Contig_5865 27 . T C 1201.82 . 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A G 932.011 . AB=0.097561;ABP=60.6867;AC=5;AF=0.833333;AN=6;AO=4;CIGAR=1M1X14M;DP=149;DPB=149;DPRA=0;EPP=11.6962;EPPR=39.9253;GTI=0;LEN=1;MEANALT=9;MQM=57;MQMR=60;NS=3;NUMALT=9;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=667;RO=17;RPL=0;RPP=11.6962;RPPR=39.9253;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:41:3,0,3,10,6,7,0,1,0,4:3:119:0,3,10,6,7,0,1,0,4:0,66,224,167,205,0,39,0,156:-18.4621,-19.3652,-29.1707,-15.1438,-24.9496,-24.0466,-4.92273,-14.7289,-10.513,-11.7186,-7.76775,-17.5747,-13.3553,-3.14101,-15.7685,-4.62592,-14.4335,-10.2141,0,-2.83896,-12.3263,-19.3652,-29.1707,-24.9496,-14.7289,-17.5747,-14.4335,-29.1707,-16.1681,-25.9742,-21.7531,-11.5323,-14.3778,-11.2364,-25.9742,-25.6732,-19.3652,-29.1707,-24.9496,-14.7289,-17.5747,-14.4335,-29.1707,-25.9742,-29.1707,-6.53935,-16.3471,-12.1258,-1.90463,-4.7493,-1.60724,-16.3471,-13.1499,-16.3471,-15.143 1|1:76:7,4,5,1,0,14,3,17,4,0:7:275:4,5,1,0,14,3,17,4,0:116,117,25,0,412,102,644,156,0:-56.1768,-50.1338,-71.5569,-50.6167,-65.0941,-71.7384,-56.6067,-71.0838,-71.5664,-78.9327,-58.2841,-72.7611,-73.2436,-79.2338,-80.9112,-29.2142,-43.6933,-44.1772,-50.165,-51.8419,-47.6275,-50.636,-65.1135,-65.5962,-71.5861,-73.2634,-44.1947,-72.3604,-6.43822,-20.9198,-21.4035,-27.3928,-29.0701,0,-21.4215,-23.9526,-45.9889,-60.4667,-60.9495,-66.9395,-68.6169,-39.5476,-60.969,-16.7736,-67.4127,-58.2841,-72.7611,-73.2436,-79.2338,-80.9112,-51.8419,-73.2634,-29.0701,-68.6169,-80.9112 0|1:32:7,0,1,1,1,5,2,8,0,0:7:273:0,1,1,1,5,2,8,0,0:0,36,38,29,160,74,302,0,0:-22.2733,-24.3805,-46.83,-21.7129,-44.1626,-43.8616,-21.5321,-43.982,-41.3147,-43.681,-22.3456,-44.7947,-42.1275,-41.9468,-44.4937,-12.8529,-35.3008,-32.6341,-32.4533,-33.2666,-33.7957,-18.4746,-40.9252,-38.2579,-38.0772,-38.8901,-29.3969,-40.3231,0,-22.4569,-19.7896,-19.6087,-20.4224,-10.9311,-16.5514,-20.0487,-24.3805,-46.83,-44.1626,-43.982,-44.7947,-35.3008,-40.9252,-22.4569,-46.83,-24.3805,-46.83,-44.1626,-43.982,-44.7947,-35.3008,-40.9252,-22.4569,-46.83,-46.83 dDocent_Contig_5869 20 . C T 167.359 . AB=0.3125;ABP=7.89611;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X1M1X2M1I1M2X;DP=37;DPB=39;DPRA=1.77778;EPP=13.8677;EPPR=48.6112;GTI=0;LEN=1;MEANALT=3;MQM=55;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=816;RO=21;RPL=0;RPP=13.8677;RPPR=48.6112;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:12:7,0,0,2,2:7:268:0,0,2,2:0,0,78,74:-4.33115,-6.43836,-28.4488,-6.43836,-28.4488,-28.4488,0,-22.0329,-22.0329,-21.4308,-0.371406,-22.395,-22.395,-15.978,-21.793 0|0:9:9,0,0,0,0:9:351:0,0,0,0:0,0,0,0:0,-2.70927,-31.951,-2.70927,-31.951,-31.951,-2.70927,-31.951,-31.951,-31.951,-2.70927,-31.951,-31.951,-31.951,-31.951 0|1:16:5,5,2,4,0:5:197:5,2,4,0:197,79,156,0:-14.6657,0,-14.7038,-9.66925,-9.70748,-25.2759,-3.36384,-3.4022,-13.0706,-18.3677,-16.1708,-16.209,-25.8779,-19.5718,-32.3792 dDocent_Contig_5870 70 . C T 38.7632 . AB=0.2;ABP=14.7363;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=41;DPB=41;DPRA=0.866667;EPP=11.6962;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.6757;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.972973;PAO=0;PQA=0;PQR=0;PRO=0;QA=134;QR=1361;RO=37;RPL=4;RPP=11.6962;RPPR=83.3548;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:10,1:10:371:1:31:0,-0.211876,-30.6255 0/0:15:15,0:15:564:0:0:0,-4.51545,-51.0995 0/1:15:12,3:12:426:3:103:-5.09457,0,-34.1602 dDocent_Contig_5872 9 . A G 248.544 . AB=0.255319;ABP=27.4509;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=47;DPB=47;DPRA=0;EPP=29.068;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.5143;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.971429;PAO=0;PQA=0;PQR=0;PRO=0;QA=452;QR=1323;RO=35;RPL=0;RPP=29.068;RPPR=79.0118;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:5,4:5:195:4:147:-10.8783,0,-15.2149 0/1:15:9,6:9:320:6:227:-16.2777,0,-24.5333 0/1:23:21,2:21:808:2:78:-0.479783,0,-66.1207 dDocent_Contig_5873 54 . G C 50.8222 . AB=0.230769;ABP=11.1951;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=22;DPB=22;DPRA=0.722222;EPP=9.52472;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=723;RO=19;RPL=3;RPP=9.52472;RPPR=44.2683;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:6,2:6:231:2:78:-4.99506,0,-18.7467 0/0:9:9,0:9:348:0:0:0,-2.70927,-31.6783 0/1:5:4,1:4:144:1:39:-2.39141,0,-11.8065 dDocent_Contig_5874 16 . C A 3595.33 . AB=0.0571429;ABP=122.255;AC=0;AF=0;AN=6;AO=4;CIGAR=1X1M1X;DP=235;DPB=235;DPRA=0;EPP=3.0103;EPPR=69.7724;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=59.1765;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.490196;PAO=0;PQA=0;PQR=0;PRO=0;QA=149;QR=3870;RO=102;RPL=0;RPP=11.6962;RPPR=191.119;RPR=4;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=79;SRP=69.7724;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:92:48,0,43:48:1789:0,43:0,1627:-118.941,-133.39,-279.821,0,-146.465,-133.521 0|0:70:25,4,41:25:953:4,41:149,1495:-114.485,-109.815,-185.468,0,-64.6606,-64.5131 0|0:73:29,0,43:29:1128:0,43:0,1685:-129.824,-138.554,-231.246,0,-92.702,-79.7577 dDocent_Contig_5876 48 . A T 389.354 . AB=0.375;ABP=8.43898;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=58;DPB=58;DPRA=1.11111;EPP=35.5824;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=584;QR=1599;RO=43;RPL=0;RPP=35.5824;RPPR=96.3836;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:673:0:0:0,-5.41854,-60.8835 0/1:32:21,11:21:783:11:424:-28.8784,0,-61.1483 0/1:8:4,4:4:143:4:160:-12.3758,0,-10.808 dDocent_Contig_5877 107 . N C 174.124 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=20.1;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=312;QR=0;RO=0;RPL=0;RPP=24.725;RPPR=0;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:8:0,8:0:0:8:244:-14.7388,-2.40824,0 1/1:2:0,2:0:0:2:68:-2.36947,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_5878 16 . G A 1470.48 . AB=0.704918;ABP=25.259;AC=4;AF=0.666667;AN=6;AO=43;CIGAR=1X1M;DP=61;DPB=61;DPRA=0;EPP=96.3836;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1716;QR=533;RO=14;RPL=0;RPP=96.3836;RPPR=33.4109;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:9,0,14:9:346:0,14:0,554:-43.2788,-45.9881,-74.3834,0,-28.7838,-24.5693 0|1:20:5,0,15:5:187:0,15:0,600:-48.3189,-49.8241,-65.1285,0,-15.6846,-11.1692 1|1:18:0,4,14:0:0:4,14:152,562:-59.1667,-46.7066,-45.5025,-12.8445,0,-8.63011 dDocent_Contig_5879 18 . A G 2863.12 . AB=0.489899;ABP=3.18577;AC=3;AF=0.5;AN=6;AO=97;CIGAR=1X;DP=198;DPB=198;DPRA=0;EPP=213.643;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3876;QR=3987;RO=101;RPL=0;RPP=213.643;RPPR=222.329;RPR=97;RUN=1;SAF=97;SAP=213.643;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:73:52,21:52:2068:21:824:-52.5017,0,-164.337 0/1:67:36,31:36:1418:31:1244:-92.0584,0,-107.71 0/1:58:13,45:13:501:45:1808:-145.469,0,-27.9732 dDocent_Contig_5880 35 . C A 52.1118 . AB=0.1875;ABP=16.582;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=27;DPB=27;DPRA=2.90909;EPP=9.52472;EPPR=52.9542;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.869565;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=906;RO=23;RPL=0;RPP=9.52472;RPPR=52.9542;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:359:0:0:0,-2.70927,-32.6737 0/1:16:12,3:12:465:3:121:-6.43157,0,-37.364 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 dDocent_Contig_5881 98 . N G 125.771 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=136;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:136:-12.576,-1.20412,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_5882 18 . A C 270.56 . AB=0.314286;ABP=13.4954;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=35;DPB=35;DPRA=0;EPP=26.8965;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=446;QR=942;RO=24;RPL=0;RPP=26.8965;RPPR=55.1256;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:10,2:10:376:2:81:-4.07337,0,-30.568 0/1:9:7,2:7:279:2:82:-5.07041,0,-22.771 0/1:14:7,7:7:287:7:283:-21.6286,0,-21.9908 dDocent_Contig_5883 15 . A C 1962.89 . AB=0.137255;ABP=119.589;AC=0;AF=0;AN=6;AO=14;CIGAR=1X3M1X2M2X1M1X2M1D3M1X;DP=261;DPB=248.667;DPRA=0;EPP=33.4109;EPPR=94.2121;GTI=0;LEN=1;MEANALT=14;MQM=30;MQMR=60;NS=3;NUMALT=9;ODDS=0;PAIRED=0;PAIREDR=0.809524;PAO=0;PQA=0;PQR=0;PRO=0;QA=551;QR=1634;RO=42;RPL=0;RPP=33.4109;RPPR=94.2121;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:87:21,8,0,0,2,8,21,0,10,6:21:819:8,0,0,2,8,21,0,10,6:215,0,0,79,304,717,0,350,240:-51.6544,-41.8612,-106.78,-57.9761,-109.188,-125.305,-57.9761,-109.188,-125.305,-125.305,-51.4805,-102.693,-118.81,-118.81,-118.208,-33.1054,-84.3204,-100.437,-100.437,-93.9415,-98.0283,0,-51.2188,-67.3315,-67.3315,-60.8364,-42.463,-61.0099,-57.9761,-109.188,-125.305,-125.305,-118.81,-100.437,-67.3315,-125.305,-29.503,-80.718,-96.8335,-96.8335,-90.3384,-71.9648,-38.8612,-96.8335,-93.8232,-38.2006,-89.4151,-105.532,-105.532,-99.0366,-80.6628,-47.5576,-105.532,-77.0598,-103.726 0|0:102:18,0,14,12,11,5,20,4,3,1:18:695:0,14,12,11,5,20,4,3,1:0,551,417,424,193,681,153,82,40:-49.8177,-55.2362,-112.321,-22.6015,-79.6853,-75.4709,-21.3365,-78.4223,-45.7882,-74.81,-20.6454,-77.7322,-45.0971,-43.833,-74.4209,-39.4016,-96.4873,-63.8518,-62.5883,-61.8979,-94.9821,0,-57.0862,-24.4539,-23.1882,-22.4968,-41.2521,-51.0656,-42.6798,-99.7653,-67.1297,-65.8663,-65.1761,-83.9313,-44.5302,-98.5611,-48.7638,-105.848,-73.2133,-71.95,-71.2597,-90.0146,-50.6142,-93.2926,-104.945,-51.9405,-109.026,-76.3898,-75.1267,-74.4366,-93.1917,-53.7906,-96.4697,-102.553,-108.725 0|0:72:3,6,0,0,2,15,22,6,13,0:3:120:6,0,0,2,15,22,6,13,0:223,0,0,78,562,783,228,460,0:-98.5334,-81.187,-89.2677,-99.4365,-91.0739,-109.323,-99.4365,-91.0739,-109.323,-109.323,-93.0301,-84.6675,-102.917,-102.917,-102.315,-53.744,-45.3815,-63.6312,-63.6312,-57.2246,-59.1157,-35.8038,-27.4419,-45.6908,-45.6908,-39.2844,0,-39.0682,-80.7417,-72.3791,-90.6286,-90.6286,-84.2222,-44.936,-26.9963,-88.8224,-61.9737,-53.6114,-71.8606,-71.8606,-65.4542,-26.169,-8.23159,-53.166,-67.9472,-99.4365,-91.0739,-109.323,-109.323,-102.917,-63.6312,-45.6908,-90.6286,-71.8606,-109.323 dDocent_Contig_5884 11 . A G 87.7003 . AB=0.162791;ABP=45.4803;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X2M1X;DP=65;DPB=65;DPRA=0.977273;EPP=18.2106;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.1552;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.775862;PAO=0;PQA=0;PQR=0;PRO=0;QA=259;QR=2287;RO=58;RPL=0;RPP=18.2106;RPPR=128.956;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:24:20,4:20:798:4:149:-6.54744,0,-64.8185 0|0:22:22,0:22:868:0:0:0,-6.62266,-77.5796 0|1:19:16,3:16:621:3:110:-4.54124,0,-50.4046 dDocent_Contig_5885 9 . A G 238.504 . AB=0.30303;ABP=14.1309;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=126;DPB=126;DPRA=0.709677;EPP=24.725;EPPR=254.901;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.9138;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.948276;PAO=0;PQA=0;PQR=0;PRO=0;QA=385;QR=4364;RO=116;RPL=0;RPP=24.725;RPPR=254.901;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:50:50,0:50:1883:0:0:0,-15.0515,-169.556 0/1:33:23,10:23:863:10:385:-25.0723,0,-56.22 0/0:43:43,0:43:1618:0:0:0,-12.9443,-145.882 dDocent_Contig_5886 17 . T A 184.521 . AB=0.25;ABP=22.5536;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=36;DPB=36;DPRA=0;EPP=22.5536;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.888889;PAIREDR=0.777778;PAO=0;PQA=0;PQR=0;PRO=0;QA=354;QR=1062;RO=27;RPL=0;RPP=22.5536;RPPR=61.6401;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:8,4:8:318:4:159:-11.0798,0,-25.3748 0/1:13:10,3:10:397:3:117:-6.99682,0,-32.1751 0/1:11:9,2:9:347:2:78:-4.09197,0,-28.2768 dDocent_Contig_5887 107 . N C 139.814 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=152;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:5:0,5:0:0:5:152:-13.9808,-1.50515,0 ./.:.:.:.:.:.:.:. dDocent_Contig_5888 25 . C A 512.284 . AB=0.30303;ABP=25.2514;AC=1;AF=0.166667;AN=6;AO=20;CIGAR=1X;DP=100;DPB=100;DPRA=3.88235;EPP=46.4397;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=800;QR=3136;RO=80;RPL=0;RPP=46.4397;RPPR=176.728;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:942:0:0:0,-7.22472,-85.0848 0/0:10:10,0:10:395:0:0:0,-3.0103,-35.9064 0/1:66:46,20:46:1799:20:800:-52.4502,0,-142.256 dDocent_Contig_5889 129 . C A 139.704 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=33;DPB=33;DPRA=1.47368;EPP=18.2106;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=56.3846;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.923077;PAO=0;PQA=0;PQR=0;PRO=0;QA=209;QR=858;RO=26;RPL=0;RPP=18.2106;RPPR=59.4686;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:7,7:7:206:7:209:-14.8908,0,-11.8727 0/0:4:4,0:4:129:0:0:0,-1.20412,-11.929 0/0:15:15,0:15:523:0:0:0,-4.51545,-46.2894 dDocent_Contig_5890 9 . A T 264.767 . AB=0.179775;ABP=82.2812;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X4M;DP=89;DPB=89;DPRA=0;EPP=22.5536;EPPR=141.985;GTI=0;LEN=1;MEANALT=2.66667;MQM=49.375;MQMR=60;NS=3;NUMALT=3;ODDS=6.93889e-18;PAIRED=0;PAIREDR=0.984375;PAO=0;PQA=0;PQR=0;PRO=0;QA=576;QR=2501;RO=64;RPL=0;RPP=37.7539;RPPR=141.985;RPR=16;RUN=1;SAF=14;SAP=22.5536;SAR=2;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:40:22,4,1,11:22:855:4,1,11:155,21,384:-23.3591,-20.7038,-89.793,-28.6703,-89.6828,-98.6595,0,-61.0554,-69.0164,-67.0181 0|1:18:15,0,2,1:15:583:0,2,1:0,79,39:-1.98881,-6.50426,-54.4086,0,-47.907,-47.3049,-3.30004,-51.2027,-44.701,-50.9017 0|1:31:27,0,0,4:27:1063:0,0,4:0,0,153:-4.80968,-12.9375,-100.393,-12.9375,-100.393,-100.393,0,-87.8395,-87.8395,-86.6354 dDocent_Contig_5893 22 . C A 66.2108 . AB=0.2;ABP=18.6449;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=34;DPB=34;DPRA=2.85714;EPP=11.6962;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.966667;PAO=0;PQA=0;PQR=0;PRO=0;QA=150;QR=1199;RO=30;RPL=0;RPP=11.6962;RPPR=68.1545;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:364:0:0:0,-2.70927,-33.1248 0/0:5:5,0:5:199:0:0:0,-1.50515,-18.2881 0/1:20:16,4:16:636:4:150:-7.84273,0,-51.5525 dDocent_Contig_5894 22 . T C 1797.64 . AB=0.196281;ABP=390.807;AC=3;AF=0.5;AN=6;AO=95;CIGAR=1X;DP=484;DPB=484;DPRA=0;EPP=209.3;EPPR=843.37;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.992248;PAO=0;PQA=0;PQR=0;PRO=0;QA=3646;QR=14743;RO=387;RPL=0;RPP=209.3;RPPR=843.37;RPR=95;RUN=1;SAF=95;SAP=209.3;SAR=0;SRF=387;SRP=843.37;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:162:131,31:131:4948:31:1130:-53.2105,0,-396.56 0/1:105:90,15:90:3415:15:580:-20.9316,0,-275.866 0/1:217:166,49:166:6380:49:1936:-109.339,0,-508.935 dDocent_Contig_5895 7 . C T 33.7859 . AB=0.222222;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=21;DPB=21;DPRA=1.5;EPP=7.35324;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.947368;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=714;RO=19;RPL=0;RPP=7.35324;RPPR=44.2683;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:296:0:0:0,-2.40824,-26.9908 0/0:4:4,0:4:154:0:0:0,-1.20412,-14.2336 0/1:9:7,2:7:264:2:77:-4.59987,0,-21.41 dDocent_Contig_5897 21 . C T 32.3433 . AB=0.125;ABP=42.0968;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=47;DPB=47;DPRA=1.06667;EPP=11.6962;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.976744;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=1708;RO=43;RPL=0;RPP=11.6962;RPPR=96.3836;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:8,1:8:306:1:40:-1.28641,0,-25.1879 0/0:15:15,0:15:604:0:0:0,-4.51545,-54.6991 0/1:23:20,3:20:798:3:121:-4.3563,0,-65.2155 dDocent_Contig_5899 97 . C T 179.909 . AB=0.277778;ABP=18.4519;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=128;DPB=128;DPRA=0.782609;EPP=24.725;EPPR=259.244;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=327;QR=3904;RO=118;RPL=10;RPP=24.725;RPPR=259.244;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=118;SRP=259.244;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:26,10:26:865:10:327:-18.9117,0,-67.3219 0/0:42:42,0:42:1331:0:0:0,-12.6433,-120.07 0/0:50:50,0:50:1708:0:0:0,-15.0515,-154.007 dDocent_Contig_5900 24 . A G 292.759 . AB=0.245283;ABP=32.8783;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=104;DPB=104;DPRA=0;EPP=39.9253;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.3103;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.931034;PAO=0;PQA=0;PQR=0;PRO=0;QA=683;QR=3425;RO=87;RPL=0;RPP=39.9253;RPPR=191.928;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:25,5:25:960:5:200:-9.34813,0,-69.634 0/1:23:15,8:15:597:8:320:-22.2436,0,-47.1448 0/0:51:47,4:47:1868:4:163:0,-0.294102,-153.268 dDocent_Contig_5901 24 . C T 270.176 . AB=0.294118;ABP=9.26925;AC=3;AF=0.5;AN=6;AO=5;CIGAR=1X3M;DP=33;DPB=33;DPRA=0;EPP=13.8677;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=863;RO=22;RPL=0;RPP=13.8677;RPPR=50.7827;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:16:10,6,0:10:392:6,0:239,0:-17.0687,0,-30.8223,-20.079,-32.6285,-52.3119 0|1:14:11,0,3:11:430:0,3:0,119:-6.88059,-10.1919,-45.5399,0,-35.743,-34.8399 0|1:3:1,0,2:1:41:0,2:0,81:-6.78264,-7.08367,-10.4694,0,-3.79354,-3.19148 dDocent_Contig_5902 169 . A G 1426.41 . AB=0.71875;ABP=29.6108;AC=3;AF=0.5;AN=6;AO=46;CIGAR=1X;DP=64;DPB=64;DPRA=0;EPP=102.898;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1829;QR=712;RO=18;RPL=46;RPP=102.898;RPPR=42.0968;RPR=0;RUN=1;SAF=0;SAP=102.898;SAR=46;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:5,4:5:195:4:161:-12.1662,0,-15.2118 0/1:28:9,19:9:353:19:765:-60.742,0,-23.6986 0/1:27:4,23:4:164:23:903:-73.4496,0,-7.02209 dDocent_Contig_5903 130 . T A 324.548 . AB=0.322581;ABP=11.486;AC=4;AF=0.666667;AN=6;AO=14;CIGAR=1X;DP=35;DPB=35;DPRA=0;EPP=33.4109;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=479;QR=713;RO=21;RPL=0;RPP=33.4109;RPPR=48.6112;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:10,6:10:312:6:216:-14.9738,0,-23.5609 0/1:15:11,4:11:401:4:119:-6.48602,0,-31.9197 1/1:4:0,4:0:0:4:144:-13.3134,-1.20412,0 dDocent_Contig_5904 46 . A G 162.723 . AB=0.4;ABP=4.31318;AC=1;AF=0.25;AN=4;AO=6;CIGAR=1X;DP=23;DPB=23;DPRA=1.875;EPP=16.0391;EPPR=18.4661;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.2941;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=667;RO=17;RPL=0;RPP=16.0391;RPPR=18.4661;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:9,6:9:349:6:239:-17.3691,0,-27.2248 0/0:8:8,0:8:318:0:0:0,-2.40824,-28.9869 ./.:.:.:.:.:.:.:. dDocent_Contig_5906 45 . C G 160.23 . AB=0.132075;ABP=127.645;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=221;DPB=221;DPRA=1.84348;EPP=33.4109;EPPR=450.334;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=540;QR=8068;RO=206;RPL=0;RPP=33.4109;RPPR=450.334;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=206;SRP=450.334;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:106:91,14:91:3516:14:540:-16.9438,0,-284.526 0/0:51:51,0:51:2015:0:0:0,-15.3525,-181.552 0/0:64:64,0:64:2537:0:0:0,-19.2659,-228.47 dDocent_Contig_5907 26 . A C 66.5614 . AB=0.2;ABP=18.6449;AC=1;AF=0.25;AN=4;AO=4;CIGAR=1X;DP=41;DPB=41;DPRA=0.952381;EPP=11.6962;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=149;QR=1405;RO=37;RPL=0;RPP=11.6962;RPPR=83.3548;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:16,4:16:610:4:149:-7.75305,0,-49.2162 0/0:21:21,0:21:795:0:0:0,-6.32163,-71.8749 ./.:.:.:.:.:.:.:. dDocent_Contig_5908 32 . C T 175.126 . AB=0.275862;ABP=15.6647;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X2M1X;DP=38;DPB=38;DPRA=1.61111;EPP=20.3821;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=309;QR=1170;RO=30;RPL=0;RPP=20.3821;RPPR=68.1545;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:13,6:13:506:6:231:-15.4382,0,-40.167 0|0:9:9,0:9:355:0:0:0,-2.70927,-32.312 0|1:10:8,2:8:309:2:78:-4.393,0,-25.1603 dDocent_Contig_5909 7 . C T 199.084 . AB=0.227273;ABP=17.2236;AC=2;AF=0.333334;AN=6;AO=5;CIGAR=2X1M1X3M;DP=55;DPB=55;DPRA=0;EPP=13.8677;EPPR=60.4905;GTI=0;LEN=1;MEANALT=6;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=0.882353;PAO=0;PQA=0;PQR=0;PRO=0;QA=191;QR=1306;RO=34;RPL=0;RPP=13.8677;RPPR=76.8404;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=32;SRP=60.4905;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:20:16,4,0,0,0,0:16:616:4,0,0,0,0:140,0,0,0,0:-6.65769,0,-49.7574,-11.4742,-50.9615,-62.0846,-11.4742,-50.9615,-62.0846,-62.0846,-11.4742,-50.9615,-62.0846,-62.0846,-62.0846,-11.4742,-50.9615,-62.0846,-62.0846,-62.0846,-62.0846 0|1:13:11,0,0,0,2,0:11:413:0,0,0,2,0:0,0,0,77,0:-3.39575,-6.70708,-40.5299,-6.70708,-40.5299,-40.5299,-6.70708,-40.5299,-40.5299,-40.5299,0,-34.206,-34.206,-34.206,-33.604,-6.70708,-40.5299,-40.5299,-40.5299,-34.206,-40.5299 0|1:22:7,1,3,2,3,5:7:277:1,3,2,3,5:39,107,65,115,191:-13.5702,-12.4702,-34.9759,-6.95912,-26.5587,-28.8619,-10.4381,-30.0362,-24.5253,-32.6403,-6.23552,-25.8373,-20.326,-23.8037,-28.1407,0,-19.6039,-14.0932,-17.5712,-13.3705,-21.3054 dDocent_Contig_5910 11 . T C 271.425 . AB=0.125;ABP=22.5536;AC=3;AF=0.5;AN=6;AO=2;CIGAR=1X2M;DP=57;DPB=57;DPRA=0;EPP=7.35324;EPPR=65.983;GTI=0;LEN=1;MEANALT=2;MQM=18;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=36;QR=1132;RO=29;RPL=0;RPP=7.35324;RPPR=65.983;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:12,7,4,0:12:468:7,4,0:279,162,0:-9.80964,-1.22425,-37.5753,0,-26.3207,-37.3669,-13.422,-39.6825,-38.571,-51.942 0|1:16:5,9,0,2:5:190:9,0,2:363,0,36:-14.2183,0,-13.0367,-15.7234,-15.7459,-31.3576,-13.6351,-13.7092,-29.2717,-28.6696 0|1:18:12,6,0,0:12:474:6,0,0:243,0,0:-6.82272,0,-37.5939,-10.4351,-39.4,-49.5552,-10.4351,-39.4,-49.5552,-49.5552 dDocent_Contig_5911 21 . C A 575.128 . AB=0.168317;ABP=196.035;AC=3;AF=0.5;AN=6;AO=34;CIGAR=1X;DP=202;DPB=202;DPRA=0;EPP=68.4099;EPPR=5.9714;GTI=0;LEN=1;MEANALT=1.66667;MQM=59.3235;MQMR=59.6545;NS=3;NUMALT=1;ODDS=0;PAIRED=0.970588;PAIREDR=0.266667;PAO=0;PQA=0;PQR=0;PRO=0;QA=1347;QR=6312;RO=165;RPL=0;RPP=76.8404;RPPR=361.303;RPR=34;RUN=1;SAF=33;SAP=68.4099;SAR=1;SRF=75;SRP=5.9714;SRR=90;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:45,9:45:1680:9:359:-16.0261,0,-134.78 0/1:55:47,8:47:1813:8:307:-11.4314,0,-146.846 0/1:92:73,17:73:2819:17:681:-33.772,0,-226.051 dDocent_Contig_5912 23 . T C 42.2309 . AB=0.15;ABP=24.2907;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=37;DPB=37;DPRA=2.35294;EPP=9.52472;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.764706;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=1365;RO=34;RPL=0;RPP=9.52472;RPPR=76.8404;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:559:0:0:0,-4.21442,-50.6531 0/0:3:3,0:3:118:0:0:0,-0.90309,-11.0027 0/1:20:17,3:17:688:3:123:-5.44419,0,-56.2291 dDocent_Contig_5914 193 . G A 61.7409 . AB=0.181818;ABP=22.3561;AC=3;AF=0.5;AN=6;AO=4;CIGAR=1X3M1X;DP=41;DPB=41;DPRA=2.31579;EPP=11.6962;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=147;QR=1351;RO=36;RPL=4;RPP=11.6962;RPPR=81.1833;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=81.1833;SRR=36;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:22:18,4:18:670:4:147:-6.96565,0,-54.0045 1|1:1:0,0:0:0:0:0:0,0,0 0|0:18:18,0:18:681:0:0:0,-5.41854,-61.6143 dDocent_Contig_5915 71 . G T 313.747 . AB=0.368421;ABP=8.7247;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=63;DPB=63;DPRA=0.76;EPP=33.4109;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=494;QR=1813;RO=49;RPL=14;RPP=33.4109;RPPR=109.412;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:920:0:0:0,-7.52575,-83.1115 0/1:17:13,4:13:489:4:135:-7.36303,0,-39.2358 0/1:21:11,10:11:404:10:359:-26.3304,0,-30.3849 dDocent_Contig_5916 9 . A C 117.367 . AB=0.307692;ABP=11.3621;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=2X1M1X;DP=57;DPB=57;DPRA=0;EPP=24.725;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=30.5;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=332;QR=1803;RO=47;RPL=0;RPP=24.725;RPPR=105.07;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:13:12,1:12:460:1:34:0,-0.989709,-38.8263 0|0:18:17,1:17:649:1:33:0,-2.53085,-55.8581 0|1:26:18,8:18:694:8:265:-12.958,0,-54.967 dDocent_Contig_5917 80 . A G 120.913 . AB=0.285714;ABP=11.386;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=48;DPB=48;DPRA=1.55556;EPP=16.0391;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=211;QR=1447;RO=42;RPL=6;RPP=16.0391;RPPR=94.2121;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:15,6:15:521:6:211:-13.012,0,-40.8977 0/0:21:21,0:21:718:0:0:0,-6.32163,-64.9359 0/0:6:6,0:6:208:0:0:0,-1.80618,-19.0596 dDocent_Contig_5918 7 . C A 2728.49 . 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AB=0.166667;ABP=14.5915;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=31;DPB=31;DPRA=1.26316;EPP=7.35324;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=1164;RO=29;RPL=2;RPP=7.35324;RPPR=65.983;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:10,2:10:402:2:82:-4.16732,0,-32.9277 0/0:5:5,0:5:199:0:0:0,-1.50515,-18.2878 0/0:14:14,0:14:563:0:0:0,-4.21442,-51.0136 dDocent_Contig_5920 191 . C A 382.651 . AB=0.208333;ABP=20.744;AC=4;AF=0.666667;AN=6;AO=13;CIGAR=1X;DP=32;DPB=32;DPRA=0;EPP=31.2394;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=504;QR=727;RO=19;RPL=13;RPP=31.2394;RPPR=44.2683;RPR=0;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:7,4:7:283:4:161:-11.5639,0,-22.5323 0/1:13:12,1:12:444:1:40:-0.0822893,0,-36.3822 1/1:8:0,8:0:0:8:303:-27.615,-2.40824,0 dDocent_Contig_5921 60 . G A 38.789 . AB=0.666667;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=25;DPB=25;DPRA=0.272727;EPP=7.35324;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.956522;PAO=0;PQA=0;PQR=0;PRO=0;QA=60;QR=827;RO=23;RPL=2;RPP=7.35324;RPPR=52.9542;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:3:1,2:1:39:2:60:-4.796,0,-2.99347 0/0:12:12,0:12:426:0:0:0,-3.61236,-38.6712 0/0:10:10,0:10:362:0:0:0,-3.0103,-32.9246 dDocent_Contig_5922 12 . A T 672.489 . AB=0.415385;ABP=7.05258;AC=2;AF=0.333333;AN=6;AO=27;CIGAR=1X;DP=78;DPB=78;DPRA=2.5;EPP=61.6401;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=983;QR=2035;RO=51;RPL=0;RPP=61.6401;RPPR=113.755;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:521:0:0:0,-3.91339,-47.2374 0/1:25:10,15:10:393:15:545:-41.8548,0,-28.1989 0/1:40:28,12:28:1121:12:438:-27.7129,0,-89.1356 dDocent_Contig_5923 7 . C T 818.109 . AB=0.0967742;ABP=90.5697;AC=0;AF=0;AN=6;AO=6;CIGAR=1X2M1X5M1X2M3X3M1X;DP=151;DPB=156.263;DPRA=0;EPP=16.0391;EPPR=126.784;GTI=0;LEN=1;MEANALT=9;MQM=28.3333;MQMR=60;NS=3;NUMALT=8;ODDS=5.55112e-17;PAIRED=0.333333;PAIREDR=1;PAO=11.6;PQA=452.6;PQR=266;PRO=7;QA=138;QR=2205;RO=57;RPL=0;RPP=16.0391;RPPR=126.784;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:52:21,0,0,0,7,8,0,0,13:21:805:0,0,0,7,8,0,0,13:0,0,0,267,267,0,0,511:-35.7034,-42.0251,-108.084,-42.0251,-108.084,-108.084,-42.0251,-108.084,-108.084,-108.084,-20.2085,-86.2636,-86.2636,-86.2636,-84.1564,-21.0619,-87.1071,-87.1071,-87.1071,-65.2894,-84.6988,-42.0251,-108.084,-108.084,-108.084,-86.2636,-87.1071,-108.084,-42.0251,-108.084,-108.084,-108.084,-86.2636,-87.1071,-108.084,-108.084,0,-66.0536,-66.0536,-66.0536,-44.2341,-45.0819,-66.0536,-66.0536,-62.1403 0|0:62:24,0,6,0,6,5,7,0,6:24:929:0,6,0,6,5,7,0,6:0,138,0,214,148,277,0,239:-15.419,-22.6437,-98.9588,-13.1441,-89.4468,-87.6406,-22.6437,-98.9588,-89.4468,-98.9588,-5.55615,-81.8696,-72.3601,-81.8696,-80.0634,-11.432,-87.7417,-78.2324,-87.7417,-70.6538,-86.2366,0,-76.3171,-66.8074,-76.3171,-59.2281,-65.101,-74.2099,-22.6437,-98.9588,-89.4468,-98.9588,-81.8696,-87.7417,-76.3171,-98.9588,-2.96007,-79.2772,-69.7671,-79.2772,-62.1881,-68.0609,-56.635,-79.2772,-77.471 0|0:37:12,2,0,4,1,2,0,3,12:12:471:2,0,4,1,2,0,3,12:72,0,160,39,51,0,105,463:-34.405,-32.1453,-70.2815,-38.0173,-70.8835,-76.7561,-25.0507,-57.9174,-63.7898,-62.5857,-34.8236,-67.6899,-73.5624,-60.5961,-73.2614,-34.3139,-67.1775,-73.0497,-60.0842,-69.8562,-72.4476,-38.0173,-70.8835,-76.7561,-63.7898,-73.5624,-73.0497,-76.7561,-29.4803,-62.3456,-68.218,-55.252,-65.0244,-64.5123,-68.218,-67.3149,0,-32.8665,-38.7384,-25.7722,-35.5448,-35.0351,-38.7384,-30.2017,-35.1261 dDocent_Contig_5924 33 . T C 282.155 . AB=0.209302;ABP=34.5724;AC=2;AF=0.333334;AN=6;AO=9;CIGAR=1X2M;DP=53;DPB=53;DPRA=2.15;EPP=22.5536;EPPR=74.6689;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.888889;PAIREDR=0.848485;PAO=0;PQA=0;PQR=0;PRO=0;QA=358;QR=1278;RO=33;RPL=0;RPP=22.5536;RPPR=74.6689;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:10:10,0,0,0:10:387:0,0,0:0,0,0:0,-3.0103,-35.1851,-3.0103,-35.1851,-35.1851,-3.0103,-35.1851,-35.1851,-35.1851 0|1:32:17,4,8,2:17:652:4,8,2:162,317,67:-20.9991,-12.7473,-65.0649,0,-40.1688,-51.1251,-20.6968,-60.8462,-48.111,-73.606 0|1:11:6,4,1,0:6:239:4,1,0:140,41,0:-9.53517,0,-18.4667,-7.94534,-16.2851,-27.3539,-11.3414,-19.6708,-27.6549,-31.0418 dDocent_Contig_5925 98 . N T 228.467 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=8.07091;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=250;QR=0;RO=0;RPL=7;RPP=18.2106;RPPR=0;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:7:0,7:0:0:7:250:-22.8466,-2.10721,0 dDocent_Contig_5927 14 . C G 303.879 . AB=0.478261;ABP=3.10471;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=29;DPB=29;DPRA=1.91667;EPP=26.8965;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=432;QR=723;RO=18;RPL=0;RPP=26.8965;RPPR=42.0968;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:232:0:0:0,-1.80618,-21.2463 0/1:11:7,4:7:287:4:162:-11.6556,0,-22.8939 0/1:12:5,7:5:204:7:270:-21.0509,0,-15.1317 dDocent_Contig_5928 70 . T A 338.358 . AB=0.283019;ABP=24.6841;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=53;DPB=53;DPRA=0;EPP=35.5824;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=569;QR=1504;RO=38;RPL=15;RPP=35.5824;RPPR=85.5263;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:11,1:11:432:1:38:-0.184909,0,-35.6226 0/1:22:13,9:13:517:9:355:-25.6889,0,-40.2523 0/1:19:14,5:14:555:5:176:-10.4568,0,-44.5727 dDocent_Contig_5930 1 . N G 76.9006 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_5931 46 . A G 242.416 . AB=0.277778;ABP=18.4519;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=40;DPB=40;DPRA=4.5;EPP=24.725;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.9;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=407;QR=1186;RO=30;RPL=0;RPP=24.725;RPPR=68.1545;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:14,5:14:552:5:202:-12.8425,0,-44.3019 0/0:4:4,0:4:160:0:0:0,-1.20412,-14.7834 0/1:17:12,5:12:474:5:205:-13.7175,0,-37.8906 dDocent_Contig_5932 190 . A G 107.206 . AB=0.259259;ABP=16.6021;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=37;DPB=37;DPRA=1.35;EPP=18.2106;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=228;QR=1200;RO=30;RPL=7;RPP=18.2106;RPPR=68.1545;RPR=0;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:399:0:0:0,-3.0103,-36.2679 0/1:20:16,4:16:637:4:129:-5.90908,0,-51.6417 0/1:7:4,3:4:164:3:99:-7.13025,0,-13.0427 dDocent_Contig_5933 82 . C G 91.1401 . AB=0.4;ABP=3.87889;AC=1;AF=0.25;AN=4;AO=4;CIGAR=1X;DP=16;DPB=16;DPRA=1.66667;EPP=11.6962;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=143;QR=436;RO=12;RPL=4;RPP=11.6962;RPPR=29.068;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:10:6,4:6:216:4:143:-10.2108,0,-16.78 0/0:6:6,0:6:220:0:0:0,-1.80618,-20.1555 dDocent_Contig_5934 16 . G A 140.888 . AB=0.0833333;ABP=39.2015;AC=2;AF=0.333334;AN=6;AO=2;CIGAR=2X3M;DP=43;DPB=43;DPRA=0;EPP=7.35324;EPPR=74.6689;GTI=0;LEN=1;MEANALT=2;MQM=48;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1288;RO=33;RPL=0;RPP=7.35324;RPPR=74.6689;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:11:7,3,0,1:7:278:3,0,1:118,0,41:-7.52588,0,-21.9711,-9.63309,-22.8742,-32.5192,-6.24433,-19.4885,-29.1338,-28.8328 0|0:8:5,0,0,3:5:195:0,0,3:0,0,121:-8.87196,-10.3771,-26.3978,-10.3771,-26.3978,-26.3978,0,-16.4186,-16.4186,-15.5155 0|1:24:21,0,2,1:21:815:0,2,1:0,81,41:-0.229975,-6.5516,-73.4992,0,-66.9391,-66.337,-3.16366,-70.1142,-63.554,-69.8132 dDocent_Contig_5935 107 . N A 103.589 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_5936 15 . G T 252.308 . AB=0.216216;ABP=28.8919;AC=4;AF=0.666667;AN=6;AO=8;CIGAR=8M1X6M;DP=37;DPB=37.3333;DPRA=0;EPP=20.3821;EPPR=50.7827;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=317;QR=851;RO=22;RPL=0;RPP=20.3821;RPPR=50.7827;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:11:1,4,5:1:39:4,5:152,196:-25.0688,-12.9093,-14.9106,-9.24899,0,-10.9507 0|1:19:16,0,2:16:619:0,2:0,81:-1.88583,-6.70231,-57.543,0,-50.8619,-50.2598 0|1:7:5,0,1:5:193:0,1:0,40:-1.90972,-3.41487,-19.3405,0,-16.038,-15.737 dDocent_Contig_5937 88 . T A 97.0805 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=32;DPB=32;DPRA=0.666667;EPP=11.6962;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=141;QR=974;RO=28;RPL=4;RPP=11.6962;RPPR=63.8115;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:4,4:4:136:4:141:-10.6289,0,-10.1675 0/0:11:11,0:11:388:0:0:0,-3.31133,-35.2576 0/0:13:13,0:13:450:0:0:0,-3.91339,-40.8291 dDocent_Contig_5938 30 . A G 1217.94 . AB=0.114286;ABP=1586.01;AC=3;AF=0.5;AN=6;AO=140;CIGAR=1X;DP=1225;DPB=1225;DPRA=0;EPP=307.016;EPPR=2348.2;GTI=0;LEN=1;MEANALT=1.66667;MQM=59.5429;MQMR=59.9704;NS=3;NUMALT=1;ODDS=0;PAIRED=0.764286;PAIREDR=0.767593;PAO=0;PQA=0;PQR=0;PRO=0;QA=5487;QR=42785;RO=1080;RPL=0;RPP=307.016;RPPR=2348.2;RPR=140;RUN=1;SAF=140;SAP=307.016;SAR=0;SRF=1080;SRP=2348.2;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:358:314,42:314:12488:42:1664:-41.5423,0,-1015.5 0/1:447:399,48:399:15828:48:1852:-32.3346,0,-1288.75 0/1:420:367,50:367:14469:50:1971:-51.6342,0,-1174.38 dDocent_Contig_5939 43 . G A 528.676 . AB=0.607143;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=17;CIGAR=1X;DP=58;DPB=58;DPRA=1.86667;EPP=39.9253;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=691;QR=1629;RO=41;RPL=0;RPP=39.9253;RPPR=92.0407;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:733:0:0:0,-5.71957,-66.2909 0/0:11:11,0:11:446:0:0:0,-3.31133,-40.496 0/1:28:11,17:11:450:17:691:-54.0894,0,-32.4269 dDocent_Contig_5940 14 . A C 120.906 . AB=0.147541;ABP=68.8308;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=176;DPB=176;DPRA=1.33333;EPP=29.068;EPPR=359.132;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=467;QR=6502;RO=164;RPL=0;RPP=29.068;RPPR=359.132;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=164;SRP=359.132;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:48:48,0:48:1922:0:0:0,-14.4494,-173.181 0/0:67:64,3:64:2495:3:119:0,-9.07399,-213.604 0/1:61:52,9:52:2085:9:348:-13.3124,0,-169.469 dDocent_Contig_5941 10 . T C 12076.5 . 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AB=0.106061;ABP=91.9749;AC=0;AF=0;AN=6;AO=7;CIGAR=1X1M1X7M1X1M;DP=170;DPB=169;DPRA=0;EPP=18.2106;EPPR=39.9253;GTI=0;LEN=1;MEANALT=10;MQM=60;MQMR=60;NS=3;NUMALT=9;ODDS=5.55112e-17;PAIRED=0.571429;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=265;QR=663;RO=17;RPL=0;RPP=18.2106;RPPR=39.9253;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:56:8,0,2,5,5,7,7,9,12,0:8:312:0,2,5,5,7,7,9,12,0:0,79,201,199,276,234,349,481,0:-40.2499,-42.6582,-68.3055,-36.1566,-61.8041,-61.2021,-26.0914,-51.7393,-45.2377,-50.2341,-26.2704,-51.9182,-45.4167,-35.3516,-50.4131,-19.9474,-45.5953,-39.0938,-29.0286,-29.2076,-43.4881,-25.3466,-50.9921,-44.491,-34.4267,-34.6057,-28.2833,-48.8849,-13.9862,-39.6341,-33.1325,-23.0673,-23.2463,-16.9233,-22.3228,-36.9248,-3.02419,-28.673,-22.1713,-12.1056,-12.2846,-5.96136,-11.3621,0,-25.0607,-42.6582,-68.3055,-61.8041,-51.7393,-51.9182,-45.5953,-50.9921,-39.6341,-28.673,-68.3055 0|0:48:8,0,10,0,0,5,4,6,9,6:8:311:0,10,0,0,5,4,6,9,6:0,379,0,0,199,154,232,357,235:-32.492,-34.9002,-60.4562,-3.83349,-29.3889,-26.3786,-34.9002,-60.4562,-29.3889,-60.4562,-34.9002,-60.4562,-29.3889,-60.4562,-60.4562,-18.5126,-44.0689,-13.0016,-44.0689,-44.0689,-42.5638,-22.4843,-48.0402,-16.9733,-48.0402,-48.0402,-31.6528,-46.836,-15.8453,-41.4013,-10.3344,-41.4013,-41.4013,-25.0138,-28.9854,-39.5951,-5.51073,-31.0672,0,-31.0672,-31.0672,-14.6794,-18.6512,-12.012,-28.358,-15.5771,-41.1332,-10.0662,-41.1332,-41.1332,-24.7456,-28.7172,-22.0782,-11.7437,-39.327 0|0:66:1,7,0,5,0,14,10,10,15,1:1:40:7,0,5,0,14,10,10,15,1:265,0,194,0,550,331,382,593,33:-90.4546,-69.0324,-70.2207,-90.7557,-72.3279,-94.0511,-74.8158,-56.3879,-78.1113,-76.6061,-90.7557,-72.3279,-94.0511,-78.1113,-94.0511,-45.5137,-27.0853,-48.8093,-32.8687,-48.8093,-44.5949,-66.4301,-48.0039,-69.7254,-53.7866,-69.7254,-24.4867,-66.7151,-59.4163,-40.9884,-62.7119,-46.7717,-62.7119,-17.4686,-38.3887,-59.7016,-41.9502,-23.5216,-45.2458,-29.305,-45.2458,0,-20.9234,-13.9048,-40.7304,-88.0882,-69.6605,-91.3836,-75.4438,-91.3836,-46.1419,-67.0583,-60.0445,-42.5785,-91.0826 dDocent_Contig_5948 6 . C T 33.8527 . AB=0.4;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=4I2M1X;DP=49;DPB=51.6667;DPRA=0.227273;EPP=7.35324;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=36;MQMR=57.5745;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.446809;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=1774;RO=47;RPL=0;RPP=7.35324;RPPR=105.07;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:16:16,0:16:604:0:0:0,-4.81648,-54.6564 0|1:5:3,2:3:112:2:69:-4.60694,0,-8.88368 0|0:28:28,0:28:1058:0:0:0,-8.42884,-95.3273 dDocent_Contig_5949 137 . T A 142.754 . AB=0.352941;ABP=6.20364;AC=1;AF=0.25;AN=4;AO=6;CIGAR=1X;DP=27;DPB=27;DPRA=1.7;EPP=16.0391;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=227;QR=755;RO=21;RPL=0;RPP=16.0391;RPPR=48.6112;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:344:0:0:0,-3.0103,-31.2774 0/1:17:11,6:11:411:6:227:-15.6733,0,-32.2111 ./.:.:.:.:.:.:.:. dDocent_Contig_5950 12 . G A 226.149 . AB=0.234043;ABP=31.8863;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=63;DPB=63;DPRA=1.46875;EPP=26.8965;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=55.8462;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.980769;PAO=0;PQA=0;PQR=0;PRO=0;QA=426;QR=2012;RO=52;RPL=0;RPP=26.8965;RPPR=115.927;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:23,4:23:890:4:163:-6.93062,0,-67.0898 0/0:16:16,0:16:617:0:0:0,-4.81648,-55.8607 0/1:20:13,7:13:505:7:263:-18.003,0,-39.7744 dDocent_Contig_5951 18 . G A 45.0466 . AB=0.129032;ABP=40.0654;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=70;DPB=70;DPRA=1.58974;EPP=11.6962;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=2596;RO=66;RPL=0;RPP=11.6962;RPPR=146.327;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:633:0:0:0,-4.81648,-57.3034 0/1:31:27,4:27:1045:4:163:-5.7265,0,-85.0067 0/0:23:23,0:23:918:0:0:0,-6.92369,-82.9284 dDocent_Contig_5952 16 . G T 604.362 . AB=0.558824;ABP=4.03217;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X2M;DP=50;DPB=50;DPRA=0;EPP=44.2683;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.777778;PAO=0;PQA=0;PQR=0;PRO=0;QA=750;QR=1023;RO=27;RPL=0;RPP=44.2683;RPPR=61.6401;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:5,0,14:5:195:0,14:0,559:-44.9349,-46.44,-62.4667,0,-16.4187,-12.2043 0|1:15:9,1,5:9:338:1,5:41,191:-12.9392,-12.2597,-39.6426,0,-24.2697,-26.1521 0|1:16:13,3,0:13:490:3,0:119,0:-6.27891,0,-39.6257,-10.1923,-40.5288,-50.3285 dDocent_Contig_5953 24 . A T 109.909 . AB=0.217391;ABP=18.9659;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=70;DPB=70;DPRA=1.55882;EPP=18.2106;EPPR=137.642;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=287;QR=2462;RO=62;RPL=0;RPP=18.2106;RPPR=137.642;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:18,5:18:715:5:205:-11.9113,0,-57.7538 0/0:30:27,2:27:1078:2:82:0,-1.16001,-89.6197 0/0:17:17,0:17:669:0:0:0,-5.11751,-60.5382 dDocent_Contig_5956 14 . C G 48.8068 . AB=0.112903;ABP=83.705;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=74;DPB=74;DPRA=2.58333;EPP=10.7656;EPPR=123.608;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.714286;PAIREDR=0.910448;PAO=0;PQA=0;PQR=0;PRO=0;QA=270;QR=2615;RO=67;RPL=0;RPP=18.2106;RPPR=148.499;RPR=7;RUN=1;SAF=6;SAP=10.7656;SAR=1;SRF=64;SRP=123.608;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:25,4:25:966:4:157:-5.77893,0,-78.4989 0/0:12:12,0:12:473:0:0:0,-3.61236,-42.9185 0/1:33:30,3:30:1176:3:113:-0.602026,0,-96.1734 dDocent_Contig_5957 18 . A T 62.5164 . AB=0.128205;ABP=49.8362;AC=2;AF=0.333334;AN=6;AO=7;CIGAR=1X3M;DP=91;DPB=91;DPRA=0;EPP=18.2106;EPPR=174.557;GTI=0;LEN=1;MEANALT=1.5;MQM=53.7143;MQMR=37.7468;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.848101;PAO=0;PQA=0;PQR=0;PRO=0;QA=221;QR=3089;RO=79;RPL=0;RPP=18.2106;RPPR=174.557;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:39:34,0,5:34:1309:0,5:0,163:-2.97148,-13.2065,-95.2961,0,-82.4071,-80.9019 0|0:23:20,1,2:20:792:1,2:40,58:0,-2.68898,-50.413,-1.47686,-46.0982,-48.7959 0|1:29:25,4,0:25:988:4,0:155,0:-5.59486,0,-43.5332,-13.1206,-44.7373,-57.4923 dDocent_Contig_5958 112 . T G 1473.22 . AB=0.459854;ABP=4.92817;AC=3;AF=0.5;AN=6;AO=63;CIGAR=1X;DP=137;DPB=137;DPRA=0;EPP=139.813;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2126;QR=2503;RO=74;RPL=0;RPP=139.813;RPPR=163.699;RPR=63;RUN=1;SAF=0;SAP=139.813;SAR=63;SRF=0;SRP=163.699;SRR=74;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:6,16:6:199:16:512:-39.7635,0,-11.6133 0/1:52:38,14:38:1268:14:479:-27.7831,0,-98.759 0/1:63:30,33:30:1036:33:1135:-83.4918,0,-74.5818 dDocent_Contig_5959 7 . A C 93.7587 . AB=0.155556;ABP=49.3833;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=65;DPB=65;DPRA=1.125;EPP=18.2106;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=272;QR=2189;RO=58;RPL=0;RPP=18.2106;RPPR=128.956;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:767:0:0:0,-6.0206,-69.359 0/1:30:25,5:25:943:5:194:-8.80194,0,-76.154 0/1:15:13,2:13:479:2:78:-2.88802,0,-38.9322 dDocent_Contig_5961 10 . T A 1667.11 . AB=0.56;ABP=6.13722;AC=3;AF=0.5;AN=6;AO=56;CIGAR=3X;DP=100;DPB=100;DPRA=0;EPP=124.613;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2217;QR=1689;RO=43;RPL=0;RPP=124.613;RPPR=96.3836;RPR=56;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:17:4,13:4:160:13:520:-42.0305,0,-9.66608 0|1:41:23,18:23:894:18:714:-52.2454,0,-68.426 0|1:42:16,25:16:635:25:983:-76.152,0,-44.8666 dDocent_Contig_5962 36 . G T 129.674 . AB=0.304348;ABP=10.6577;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=61;DPB=61;DPRA=1.21053;EPP=18.2106;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9444;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.981481;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=2079;RO=54;RPL=0;RPP=18.2106;RPPR=120.27;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:478:0:0:0,-3.91339,-43.3575 0/1:23:16,7:16:621:7:231:-14.1893,0,-49.302 0/0:25:25,0:25:980:0:0:0,-7.52575,-88.5064 dDocent_Contig_5963 31 . C T 106.266 . AB=0.217391;ABP=18.9659;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=53;DPB=53;DPRA=1.53333;EPP=13.8677;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.957447;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=1869;RO=47;RPL=0;RPP=13.8677;RPPR=105.07;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:18,5:18:709:5:201:-11.5474,0,-57.2139 0/0:12:11,0:11:438:0:0:0,-3.31133,-39.3669 0/0:18:18,0:18:722:0:0:0,-5.41854,-65.306 dDocent_Contig_5964 30 . C T 171.885 . AB=0.304348;ABP=10.6577;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=32;DPB=32;DPRA=1.27778;EPP=18.2106;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=285;QR=1008;RO=25;RPL=0;RPP=18.2106;RPPR=57.2971;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:363:0:0:0,-2.70927,-33.0347 0/1:14:11,3:11:441:3:122:-7.15807,0,-35.8311 0/1:9:5,4:5:204:4:163:-12.3492,0,-16.0348 dDocent_Contig_5965 76 . A C 1352.33 . AB=0.494845;ABP=3.03269;AC=3;AF=0.5;AN=6;AO=48;CIGAR=1X;DP=97;DPB=97;DPRA=0;EPP=107.241;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1857;QR=1923;RO=49;RPL=48;RPP=107.241;RPPR=109.412;RPR=0;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:7,20:7:279:20:777:-62.1232,0,-17.3535 0/1:26:21,5:21:839:5:201:-10.6437,0,-67.9984 0/1:44:21,23:21:805:23:879:-66.1831,0,-59.5283 dDocent_Contig_5966 88 . A C 264.013 . AB=0.714286;ABP=8.59409;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=44;DPB=44;DPRA=0.933333;EPP=24.725;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.970588;PAO=0;PQA=0;PQR=0;PRO=0;QA=350;QR=1179;RO=34;RPL=10;RPP=24.725;RPPR=76.8404;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:695:0:0:0,-6.0206,-62.874 0/1:14:4,10:4:139:10:350:-27.6231,0,-8.63827 0/0:10:10,0:10:345:0:0:0,-3.0103,-31.3837 dDocent_Contig_5967 9 . T C 100.014 . AB=0.4;ABP=3.87889;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=56;DPB=56;DPRA=1.05556;EPP=13.8677;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=1967;RO=51;RPL=0;RPP=13.8677;RPPR=113.755;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:697:0:0:0,-5.41854,-63.0643 0/1:10:6,4:6:233:4:154:-11.2233,0,-18.3298 0/0:28:27,1:27:1037:1:39:0,-4.53228,-89.7414 dDocent_Contig_5968 12 . T A 232.038 . AB=0.310345;ABP=12.0706;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=49;DPB=49;DPRA=0.725;EPP=22.5536;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=364;QR=1561;RO=39;RPL=0;RPP=22.5536;RPPR=87.6977;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:11,1:11:437:1:40:-0.383319,0,-36.0723 0/1:17:9,8:9:363:8:324:-24.4119,0,-27.9168 0/0:20:19,0:19:761:0:0:0,-5.71957,-68.4579 dDocent_Contig_5969 7 . A C 663.739 . AB=0.402985;ABP=8.4876;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1X2M2X3M1X;DP=67;DPB=67;DPRA=0;EPP=61.6401;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1.33333;MQM=54.9259;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=0.851852;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1042;QR=1481;RO=38;RPL=0;RPP=61.6401;RPPR=85.5263;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:26:8,18,0:8:314:18,0:695,0:-55.0536,0,-20.7987,-57.4618,-26.2172,-83.2889 0|1:14:8,4,2:8:315:4,2:151,79:-8.21241,0,-24.7095,-4.09805,-19.4124,-29.4531 0|1:27:22,5,0:22:852:5,0:196,0:-6.82457,0,-68.8715,-13.4472,-70.3766,-83.4873 dDocent_Contig_5970 64 . A G 221.701 . AB=0.375;ABP=6.26751;AC=2;AF=0.5;AN=4;AO=9;CIGAR=1X;DP=24;DPB=24;DPRA=0;EPP=22.5536;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=346;QR=573;RO=15;RPL=9;RPP=22.5536;RPPR=35.5824;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:9,2:9:343:2:79:-4.18591,0,-27.9159 0/1:13:6,7:6:230:7:267:-20.4787,0,-17.1529 ./.:.:.:.:.:.:.:. dDocent_Contig_5971 10 . T C 4890.09 . AB=0.133731;ABP=1371;AC=3;AF=0.5;AN=6;AO=157;CIGAR=1X8M;DP=1174;DPB=1174.67;DPRA=0;EPP=293.808;EPPR=288.994;GTI=0;LEN=1;MEANALT=32;MQM=59.0892;MQMR=48.231;NS=3;NUMALT=5;ODDS=0;PAIRED=0.0764331;PAIREDR=0.274368;PAO=0;PQA=0;PQR=0;PRO=0;QA=6161;QR=10591;RO=277;RPL=0;RPP=343.931;RPPR=604.508;RPR=157;RUN=1;SAF=151;SAP=293.808;SAR=6;SRF=234;SRP=288.994;SRR=43;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:411:88,30,22,65,64,42:88:3393:30,22,65,64,42:587,862,2409,2510,888:-179.571,-169.541,-418.671,-157.935,-379.577,-409.476,-14.033,-235.681,-224.077,-252.636,0,-221.65,-210.045,-66.1443,-238.906,-149.978,-371.618,-360.014,-216.118,-202.086,-395.495 0|1:472:114,26,33,65,48,52:114:4341:26,33,65,48,52:519,1251,2427,1847,949:-159.971,-160.944,-443.721,-120.343,-377.604,-401.015,0,-257.267,-216.666,-271.045,-42.7429,-300.008,-259.408,-139.068,-318.904,-137.599,-394.856,-354.257,-233.92,-276.66,-412.546 0|1:291:75,4,16,62,45,26:75:2857:4,16,62,45,26:56,639,2256,1804,709:-153.184,-172.943,-374.634,-138.5,-338.577,-336.579,0,-200.083,-165.64,-184.237,-27.1889,-227.273,-192.83,-54.3299,-216.546,-125.442,-325.517,-291.075,-152.581,-179.771,-320.509 dDocent_Contig_5973 14 . T A 2343.56 . AB=0.361702;ABP=42.0506;AC=3;AF=0.5;AN=6;AO=85;CIGAR=1X7M;DP=235;DPB=235;DPRA=0;EPP=187.585;EPPR=293.988;GTI=0;LEN=1;MEANALT=4;MQM=59.4588;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.952941;PAIREDR=0.992537;PAO=0;PQA=0;PQR=0;PRO=0;QA=3387;QR=5311;RO=134;RPL=0;RPP=187.585;RPPR=293.988;RPR=85;RUN=1;SAF=85;SAP=187.585;SAR=0;SRF=134;SRP=293.988;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:83:43,0,36:43:1700:0,36:0,1452:-106.744,-119.688,-259.582,0,-139.896,-129.059 0|1:72:50,4,15:50:1994:4,15:160,600:-34.3751,-36.2462,-199.259,0,-151.041,-159.705 0|1:80:41,0,34:41:1617:0,34:0,1335:-96.9542,-109.296,-242.341,0,-133.088,-122.853 dDocent_Contig_5974 198 . C T 106.034 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=29;DPB=29;DPRA=0.761905;EPP=11.6962;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=945;RO=25;RPL=4;RPP=11.6962;RPPR=57.2971;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:479:0:0:0,-3.91339,-43.4492 0/0:8:8,0:8:310:0:0:0,-2.40824,-28.2636 0/1:8:4,4:4:156:4:154:-11.8252,0,-12.009 dDocent_Contig_5975 12 . G A 65.723 . AB=0.104839;ABP=171.194;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=151;DPB=151;DPRA=2.2963;EPP=31.2394;EPPR=302.673;GTI=0;LEN=1;MEANALT=1;MQM=59.3846;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.923077;PAIREDR=0.956522;PAO=0;PQA=0;PQR=0;PRO=0;QA=500;QR=5344;RO=138;RPL=0;RPP=31.2394;RPPR=302.673;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=138;SRP=302.673;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:43,4:43:1662:4:160:-0.614813,0,-135.678 0/1:77:68,9:68:2645:9:340:-7.77092,0,-215.036 0/0:27:27,0:27:1037:0:0:0,-8.12781,-93.622 dDocent_Contig_5976 13 . G A 87.4583 . AB=0.235294;ABP=13.3567;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=29;DPB=29;DPRA=2.83333;EPP=11.6962;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=987;RO=25;RPL=0;RPP=11.6962;RPPR=57.2971;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:13,4:13:518:4:160:-9.66592,0,-41.8501 0/0:9:9,0:9:360:0:0:0,-2.70927,-32.7629 0/0:3:3,0:3:109:0:0:0,-0.90309,-10.1662 dDocent_Contig_5977 9 . T C 1784.08 . AB=0.086758;ABP=327.849;AC=6;AF=1;AN=6;AO=19;CIGAR=1X9M;DP=219;DPB=221.7;DPRA=0;EPP=44.2683;EPPR=59.4686;GTI=0;LEN=1;MEANALT=14.3333;MQM=58.1053;MQMR=60;NS=3;NUMALT=9;ODDS=5.55112e-17;PAIRED=0.789474;PAIREDR=0.807692;PAO=0;PQA=0;PQR=0;PRO=0;QA=708;QR=1029;RO=26;RPL=0;RPP=44.2683;RPPR=59.4686;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:78:9,0,5,5,4,17,10,8,8,0:9:353:0,5,5,4,17,10,8,8,0:0,193,60,144,627,380,292,310,0:-50.7012,-53.4105,-82.4472,-37.5572,-66.5947,-65.0895,-50.8273,-79.8619,-64.0105,-78.3568,-41.6603,-70.6974,-54.8447,-68.1131,-69.4933,-2.13131,-31.1708,-15.317,-28.5904,-19.4205,-26.0533,-22.2407,-51.279,-35.4257,-48.6962,-39.5289,0,-48.2687,-29.8262,-58.8638,-43.0109,-56.2806,-47.1139,-7.58612,-27.6948,-56.4556,-28.0664,-57.1044,-41.2512,-54.521,-45.3543,-5.82581,-25.9349,-33.5203,-54.6962,-53.4105,-82.4472,-66.5947,-79.8619,-70.6974,-31.1708,-51.279,-58.8638,-57.1044,-82.4472 1|1:68:12,4,2,1,0,16,17,4,1,2:12:477:4,2,1,0,16,17,4,1,2:159,69,12,0,601,638,156,39,48:-58.594,-49.1167,-87.1921,-56.6016,-82.7914,-95.2782,-61.6908,-87.8801,-95.364,-100.668,-62.2064,-88.3962,-95.8803,-100.969,-101.485,-12.9802,-39.1718,-46.6568,-51.7462,-52.2613,-47.4448,-9.94334,-36.1351,-43.6201,-48.7097,-49.2246,0,-44.1071,-49.3816,-75.5719,-83.0562,-88.1448,-88.6609,-39.4367,-36.4,-87.4568,-59.0001,-85.19,-92.6741,-97.7626,-98.2789,-49.0551,-46.0184,-85.4547,-97.9779,-59.0345,-85.2237,-92.7077,-97.7962,-98.3123,-49.0901,-46.0536,-85.4885,-95.1063,-97.7103 1|1:73:5,4,3,3,1,20,3,0,10,11:5:199:4,3,3,1,20,3,0,10,11:155,118,93,40,750,115,0,359,278:-72.828,-61.5963,-76.7833,-64.6235,-68.2779,-80.1114,-66.8716,-70.526,-73.5531,-82.3593,-71.037,-74.6914,-77.7185,-79.9664,-87.1267,-12.8914,-16.5466,-19.5742,-21.8235,-25.9887,-23.2646,-64.8924,-68.5468,-71.574,-73.822,-77.9874,-19.8433,-80.3803,-74.3331,-77.9874,-81.0145,-83.2623,-87.4278,-29.2852,-81.2834,-90.7237,-45.0516,-48.7062,-51.7335,-53.9819,-58.1471,0,-52.0024,-61.4432,-58.4329,-55.1574,-58.8117,-61.8385,-64.087,-68.2514,-10.1144,-62.1075,-71.5472,-42.2698,-68.2358 dDocent_Contig_5978 41 . T A 39.9266 . AB=0.25;ABP=7.35324;AC=1;AF=0.25;AN=4;AO=2;CIGAR=1X1M1X;DP=14;DPB=14;DPRA=1.33333;EPP=7.35324;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=431;RO=12;RPL=0;RPP=7.35324;RPPR=29.068;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:8:6,2:6:217:2:79:-5.08939,0,-17.4698 .:.:.:.:.:.:.:. 0|0:6:6,0:6:214:0:0:0,-1.80618,-19.6051 dDocent_Contig_5979 79 . G A 1273.08 . AB=0.1875;ABP=30.1537;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X3M2X;DP=87;DPB=87.3333;DPRA=0;EPP=16.0391;EPPR=48.6112;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0.666667;QA=216;QR=706;RO=21;RPL=6;RPP=16.0391;RPPR=48.6112;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:39:4,16,0,2,16:4:134:16,0,2,16:585,0,74,557:-81.0507,-34.4432,-40.4758,-82.2548,-45.2923,-93.1043,-76.2,-39.2362,-87.0495,-86.4474,-36.971,0,-47.8175,-41.7625,-43.001 0|0:32:11,3,6,0,12:11:364:3,6,0,12:111,216,0,429:-31.6652,-25.8939,-54.4187,-17.3521,-37.6942,-44.9719,-34.9766,-55.3218,-46.7781,-64.4049,0,-20.3352,-11.7898,-29.4205,-25.8082 0|1:16:6,7,0,0,3:6:208:7,0,0,3:247,0,0,105:-18.3091,0,-14.7974,-20.1153,-16.9046,-37.0202,-20.1153,-16.9046,-37.0202,-37.0202,-11.573,-8.36039,-28.477,-28.477,-27.5739 dDocent_Contig_5980 23 . T C 57.5728 . AB=0.25;ABP=9.52472;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=21;DPB=21;DPRA=0.666667;EPP=9.52472;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=661;RO=18;RPL=0;RPP=9.52472;RPPR=42.0968;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:321:0:0:0,-2.70927,-29.2311 0/1:3:1,2:1:39:2:82:-6.87659,0,-2.99347 0/1:9:8,1:8:301:1:40:-1.28641,0,-24.7374 dDocent_Contig_5981 19 . A G 703.242 . AB=0.472727;ABP=3.36563;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X;DP=55;DPB=55;DPRA=0;EPP=36.4176;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.884615;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=995;QR=1129;RO=29;RPL=0;RPP=59.4686;RPPR=65.983;RPR=26;RUN=1;SAF=23;SAP=36.4176;SAR=3;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:11,4:11:434:4:148:-9.16498,0,-34.8985 0/1:20:12,8:12:451:8:297:-21.058,0,-34.8989 0/1:20:6,14:6:244:14:550:-43.8179,0,-16.3182 dDocent_Contig_5982 16 . T C 1074.01 . AB=0.454545;ABP=3.60252;AC=4;AF=0.666667;AN=6;AO=34;CIGAR=1X;DP=53;DPB=53;DPRA=0;EPP=76.8404;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1361;QR=758;RO=19;RPL=0;RPP=76.8404;RPPR=44.2683;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:6,9:6:237:9:359:-28.1571,0,-17.1866 0/1:18:12,6:12:482:6:242:-16.739,0,-38.3121 1/1:20:1,19:1:39:19:760:-64.8239,-2.12404,0 dDocent_Contig_5983 7 . A G 117.364 . AB=0.205128;ABP=32.4644;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=65;DPB=65;DPRA=0;EPP=3.25157;EPPR=47.8357;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.589286;PAO=0;PQA=0;PQR=0;PRO=0;QA=314;QR=2084;RO=56;RPL=0;RPP=22.5536;RPPR=124.613;RPR=9;RUN=1;SAF=4;SAP=3.25157;SAR=5;SRF=45;SRP=47.8357;SRR=11;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:10,4:10:369:4:147:-9.37445,0,-29.3437 0/1:25:21,4:21:766:4:132:-4.68068,0,-61.7371 0/0:26:25,1:25:949:1:35:0,-4.32815,-82.2265 dDocent_Contig_5984 26 . A C 68.8906 . AB=0.12069;ABP=75.4926;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=172;DPB=172;DPRA=1.41111;EPP=24.725;EPPR=354.789;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.95679;PAO=0;PQA=0;PQR=0;PRO=0;QA=401;QR=6491;RO=162;RPL=0;RPP=24.725;RPPR=354.789;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=162;SRP=354.789;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:69:66,3:66:2634:3:121:0,-9.49087,-225.915 0/0:45:45,0:45:1809:0:0:0,-13.5463,-163.018 0/1:58:51,7:51:2048:7:280:-8.11091,0,-167.046 dDocent_Contig_5985 11 . G C 5563.29 . AB=0.766871;ABP=103.844;AC=4;AF=0.666667;AN=6;AO=179;CIGAR=1X;DP=220;DPB=220;DPRA=0;EPP=302.031;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1.33333;MQM=58.4581;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.553073;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6971;QR=1479;RO=37;RPL=0;RPP=391.704;RPPR=83.3548;RPR=179;RUN=1;SAF=168;SAP=302.031;SAR=11;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:57:3,54:3:114:54:2087:-174.13,-6.52862,0 0/1:110:22,84:22:882:84:3294:-262.941,0,-47.3757 0/1:53:12,41:12:483:41:1590:-121.576,0,-27.8654 dDocent_Contig_5986 141 . A G 41.498 . AB=0.222222;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=26;DPB=26;DPRA=1.05882;EPP=7.35324;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=959;RO=24;RPL=0;RPP=7.35324;RPPR=55.1256;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:282:2:82:-5.07041,0,-23.0428 0/0:12:12,0:12:473:0:0:0,-3.61236,-42.9145 0/0:5:5,0:5:204:0:0:0,-1.50515,-18.744 dDocent_Contig_5988 10 . G A 471.04 . AB=0.1;ABP=72.4974;AC=3;AF=0.5;AN=6;AO=5;CIGAR=1X4M;DP=99;DPB=99;DPRA=0;EPP=13.8677;EPPR=148.499;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.985075;PAO=0;PQA=0;PQR=0;PRO=0;QA=194;QR=2636;RO=67;RPL=0;RPP=13.8677;RPPR=148.499;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:13,0,8,2:13:515:0,8,2:0,321,72:-22.5691,-26.4825,-68.8726,0,-42.4195,-40.0113,-20.6182,-63.0034,-36.5518,-62.4013 0|1:49:34,5,10,0:34:1323:5,10,0:194,387,0:-21.55,-15.8455,-123.069,0,-92.7886,-105.717,-31.785,-124.574,-108.728,-140.513 0|1:27:20,0,4,3:20:798:0,4,3:0,155,122:-6.7013,-12.7219,-78.445,0,-65.7141,-64.5099,-2.65051,-68.3807,-55.6498,-67.4776 dDocent_Contig_5989 27 . C T 118.936 . AB=0.263158;ABP=12.2676;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=138;DPB=138;DPRA=0.319328;EPP=13.8677;EPPR=291.816;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=55.6316;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.864662;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=5240;RO=133;RPL=0;RPP=13.8677;RPPR=291.816;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=133;SRP=291.816;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:62:62,0:62:2445:0:0:0,-18.6639,-206.476 0/0:57:57,0:57:2234:0:0:0,-17.1587,-191.281 0/1:19:14,5:14:561:5:205:-13.1154,0,-45.1124 dDocent_Contig_5990 37 . A T 114.097 . AB=0.212121;ABP=26.7649;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X;DP=33;DPB=33;DPRA=0;EPP=18.2106;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=265;QR=984;RO=26;RPL=0;RPP=18.2106;RPPR=59.4686;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:5:4,1:4:132:1:40:-2.49053,0,-10.6957 0/1:12:8,4:8:313:4:158:-10.9881,0,-24.9219 0/1:16:14,2:14:539:2:67:-1.54605,0,-44.0321 dDocent_Contig_5991 10 . G A 811.844 . AB=0.373494;ABP=14.5479;AC=3;AF=0.5;AN=6;AO=31;CIGAR=1X;DP=83;DPB=83;DPRA=0;EPP=70.3259;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1209;QR=2048;RO=52;RPL=0;RPP=70.3259;RPPR=115.927;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:29,19:29:1137:19:722:-50.8497,0,-88.1625 0/1:15:8,7:8:312:7:283:-21.3279,0,-23.9252 0/1:20:15,5:15:599:5:204:-12.7234,0,-48.2265 dDocent_Contig_5992 175 . C T 447.549 . AB=0.386364;ABP=7.94546;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=44;DPB=44;DPRA=0;EPP=39.9253;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=673;QR=1040;RO=27;RPL=17;RPP=39.9253;RPPR=61.6401;RPR=0;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:15,4:15:573:4:157:-8.78886,0,-46.1899 0/1:19:11,8:11:427:8:314:-22.9046,0,-33.0594 0/1:6:1,5:1:40:5:202:-16.7553,0,-2.1895 dDocent_Contig_5995 17 . A G 41.2835 . AB=0.111111;ABP=26.6552;AC=2;AF=0.333334;AN=6;AO=2;CIGAR=1X1M2X;DP=30;DPB=30;DPRA=9;EPP=7.35324;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=981;RO=25;RPL=0;RPP=7.35324;RPPR=57.2971;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:18:16,0,2:16:627:0,2:0,78:-1.98476,-6.80124,-58.3636,0,-51.9522,-51.3502 0|0:2:2,0,0:2:80:0,0:0,0:0,-0.60206,-7.59179,-0.60206,-7.59179,-7.59179 0|1:10:7,2,0:7:274:2,0:79,0:-4.42358,0,-21.9639,-6.53079,-22.5659,-29.0686 dDocent_Contig_5996 10 . G A 4537.57 . AB=0.696262;ABP=74.608;AC=3;AF=0.5;AN=6;AO=149;CIGAR=1X;DP=214;DPB=214;DPRA=0;EPP=118.448;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=59.4027;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.395973;PAIREDR=0.630769;PAO=0;PQA=0;PQR=0;PRO=0;QA=5794;QR=2588;RO=65;RPL=0;RPP=326.56;RPPR=144.156;RPR=149;RUN=1;SAF=119;SAP=118.448;SAR=30;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:107:38,69:38:1506:69:2710:-211.813,0,-103.576 0/1:64:9,55:9:358:55:2107:-170.383,0,-13.3171 0/1:43:18,25:18:724:25:977:-75.2788,0,-52.5413 dDocent_Contig_5998 17 . G T 188.724 . AB=0.35;ABP=6.91895;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=38;DPB=38;DPRA=2.22222;EPP=18.2106;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=286;QR=1223;RO=31;RPL=0;RPP=18.2106;RPPR=70.3259;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:398:0:0:0,-3.0103,-36.179 0/0:8:8,0:8:316:0:0:0,-2.40824,-28.8047 0/1:20:13,7:13:509:7:286:-20.0942,0,-40.1359 dDocent_Contig_5999 86 . A T 44.1088 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=19;DPB=19;DPRA=0.533333;EPP=7.35324;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=72;QR=574;RO=17;RPL=2;RPP=7.35324;RPPR=39.9253;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:299:0:0:0,-2.70927,-27.2326 0/1:4:2,2:2:73:2:72:-5.6326,0,-5.72718 0/0:6:6,0:6:202:0:0:0,-1.80618,-18.5102 dDocent_Contig_6000 36 . T C 177.376 . AB=0.12;ABP=191.147;AC=1;AF=0.166667;AN=6;AO=35;CIGAR=1X;DP=452;DPB=452;DPRA=0;EPP=79.0118;EPPR=880.473;GTI=0;LEN=1;MEANALT=1.33333;MQM=57.2;MQMR=55.5673;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.371429;PAIREDR=0.365385;PAO=0;PQA=0;PQR=0;PRO=0;QA=1367;QR=16227;RO=416;RPL=0;RPP=79.0118;RPPR=889.055;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=413;SRP=880.473;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:150:142,7:142:5485:7:270:0,-20.3329,-457.611 0/0:152:142,10:142:5534:10:385:0,-10.9846,-450.873 0/1:150:132,18:132:5208:18:712:-18.9594,0,-416.423 dDocent_Contig_6001 200 . C T 211.264 . AB=0.777778;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=31;DPB=31;DPRA=0.818182;EPP=18.2106;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=271;QR=915;RO=24;RPL=7;RPP=18.2106;RPPR=55.1256;RPR=0;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:2,7:2:78:7:271:-22.0472,0,-4.6942 0/0:10:10,0:10:380:0:0:0,-3.0103,-34.5532 0/0:12:12,0:12:457:0:0:0,-3.61236,-41.4768 dDocent_Contig_6002 28 . A G 90.9549 . AB=0.171429;ABP=35.8306;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=55;DPB=55;DPRA=0.875;EPP=16.0391;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=235;QR=1950;RO=49;RPL=0;RPP=16.0391;RPPR=109.412;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:808:0:0:0,-6.0206,-73.0359 0/1:16:12,4:12:470:4:153:-9.32372,0,-37.8311 0/1:19:17,2:17:672:2:82:-2.06011,0,-55.0873 dDocent_Contig_6003 23 . C A 2067.44 . AB=0.776471;ABP=59.443;AC=3;AF=0.5;AN=6;AO=66;CIGAR=1X;DP=85;DPB=85;DPRA=0;EPP=146.327;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.894737;PAO=0;PQA=0;PQR=0;PRO=0;QA=2605;QR=754;RO=19;RPL=0;RPP=146.327;RPPR=44.2683;RPR=66;RUN=1;SAF=66;SAP=146.327;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:8,20:8:321:20:786:-62.6324,0,-20.8296 0/1:34:3,31:3:118:31:1215:-99.3901,0,-0.767184 0/1:23:8,15:8:315:15:604:-47.7748,0,-21.7909 dDocent_Contig_6004 110 . T C 205.934 . AB=0;ABP=0;AC=2;AF=0.5;AN=4;AO=3;CIGAR=2X5I3M1X1M1X;DP=8;DPB=13;DPRA=0.6;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=27;MQMR=0;NS=2;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=110;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:3:0,3,0:0:0:3,0:110,0:-7.41365,-0.90309,0,-7.41365,-0.90309,-7.41365 0|0:5:0,0,5:0:0:0,5:0,155:-12.8761,-12.8761,-12.8761,-1.50515,-1.50515,0 dDocent_Contig_6005 8 . T G 43.4458 . AB=0.1;ABP=141.985;AC=1;AF=0.166667;AN=6;AO=22;CIGAR=1X;DP=291;DPB=291;DPRA=0;EPP=50.7827;EPPR=436.988;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=57.1348;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.146067;PAO=0;PQA=0;PQR=0;PRO=0;QA=851;QR=10143;RO=267;RPL=0;RPP=50.7827;RPPR=582.793;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=249;SRP=436.988;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:100:90,10:90:3370:10:389:-5.26538,0,-272.044 0/0:75:70,5:70:2669:5:193:0,-4.83589,-217.955 0/0:116:107,7:107:4104:7:269:0,-10.1393,-342.774 dDocent_Contig_6006 48 . G A 107.997 . AB=0.222222;ABP=9.04217;AC=0;AF=0;AN=6;AO=2;CIGAR=1X3M3X;DP=22;DPB=22;DPRA=1.38462;EPP=7.35324;EPPR=37.7539;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=632;RO=16;RPL=2;RPP=7.35324;RPPR=37.7539;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:8:8,0,0:8:317:0,0:0,0:0,-2.40824,-28.8971,-2.40824,-28.8971,-28.8971 0|0:9:3,2,4:3:117:2,4:75,157:-12.0211,-6.78715,-15.8015,0,-3.48959,-8.42231 0|0:5:5,0,0:5:198:0,0:0,0:0,-1.50515,-18.1978,-1.50515,-18.1978,-18.1978 dDocent_Contig_6007 10 . C A 66.7136 . AB=0.173913;ABP=24.253;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=53;DPB=53;DPRA=0.383333;EPP=11.6962;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=1951;RO=49;RPL=0;RPP=11.6962;RPPR=109.412;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:30,0:30:1183:0:0:0,-9.0309,-106.748 0/1:12:11,1:11:444:1:41:-0.482207,0,-36.7029 0/1:11:8,3:8:324:3:120:-7.87598,0,-26.2175 dDocent_Contig_6009 60 . C T 495.274 . AB=0.486486;ABP=3.06899;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=41;DPB=41;DPRA=4.625;EPP=42.0968;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=684;QR=923;RO=23;RPL=18;RPP=42.0968;RPPR=52.9542;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:10,1:10:402:1:37:-0.386499,0,-33.2282 0/1:26:9,17:9:358:17:647:-50.7351,0,-24.7559 0/0:4:4,0:4:163:0:0:0,-1.20412,-15.0584 dDocent_Contig_6010 146 . G C 35.09 . AB=0.133333;ABP=38.0434;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=66;DPB=66;DPRA=0;EPP=13.8677;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=2266;RO=61;RPL=0;RPP=13.8677;RPPR=135.47;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=135.47;SRR=61;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:9,1:9:343:1:37:-0.687529,0,-28.2138 0/1:20:17,3:17:628:3:115:-4.70339,0,-50.8279 0/0:36:35,1:35:1295:1:41:0,-6.74251,-112.727 dDocent_Contig_6011 8 . T G 98.2542 . AB=0.4;ABP=3.87889;AC=1;AF=0.25;AN=4;AO=4;CIGAR=1X;DP=17;DPB=17;DPRA=1.42857;EPP=11.6962;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=501;RO=13;RPL=0;RPP=11.6962;RPPR=31.2394;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:269:0:0:0,-2.10721,-24.5747 ./.:.:.:.:.:.:.:. 0/1:10:6,4:6:232:4:154:-11.2233,0,-18.2386 dDocent_Contig_6014 11 . C T 4578.45 . AB=0.263393;ABP=111.933;AC=3;AF=0.5;AN=6;AO=59;CIGAR=2X1M1X;DP=224;DPB=224;DPRA=0;EPP=131.127;EPPR=72.4974;GTI=0;LEN=1;MEANALT=3;MQM=44.9322;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2293;QR=1277;RO=32;RPL=0;RPP=131.127;RPPR=72.4974;RPR=59;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:51:0,11,40:0:0:11,40:428,1479:-152.251,-118.156,-114.845,-34.4694,0,-22.4282 1|0:63:14,18,29:14:557:18,29:701,1156:-97.7475,-46.3203,-86.7669,-9.76658,0,-46.9078 1|0:110:18,30,60:18:720:30,60:1164,2312:-211.563,-124.616,-174.901,-33.0432,0,-74.3042 dDocent_Contig_6016 11 . C T 207.79 . AB=0.347826;ABP=7.63648;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=71;DPB=71;DPRA=0.958333;EPP=20.3821;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=314;QR=2533;RO=63;RPL=0;RPP=20.3821;RPPR=139.813;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:15,8:15:606:8:314:-21.6998,0,-47.9543 0/0:28:28,0:28:1115:0:0:0,-8.42884,-100.636 0/0:20:20,0:20:812:0:0:0,-6.0206,-73.3944 dDocent_Contig_6017 96 . C T 156.767 . AB=0.666667;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=32;DPB=32;DPRA=0.782609;EPP=16.0391;EPPR=43.4331;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=0.923077;PAO=0;PQA=0;PQR=0;PRO=0;QA=214;QR=905;RO=26;RPL=6;RPP=16.0391;RPPR=59.4686;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=24;SRP=43.4331;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:420:0:0:0,-3.61236,-38.1351 0/0:11:11,0:11:381:0:0:0,-3.31133,-32.1187 0/1:9:3,6:3:104:6:214:-16.8986,0,-6.99382 dDocent_Contig_6018 8 . T A 2429.95 . AB=0.0526316;ABP=69.0688;AC=0;AF=0;AN=6;AO=2;CIGAR=2X;DP=126;DPB=126;DPRA=0;EPP=7.35324;EPPR=92.0407;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=1553;RO=41;RPL=0;RPP=7.35324;RPPR=92.0407;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:63:21,0,42:21:793:0,42:0,1605:-125.754,-132.075,-197.071,0,-65.3751,-52.7318 0|0:25:5,0,20:5:188:0,20:0,750:-60.3008,-61.8059,-77.2093,0,-15.7789,-9.75829 0|0:38:15,2,21:15:572:2,21:76,795:-60.657,-58.9393,-105.264,0,-40.6934,-40.6046 dDocent_Contig_6019 107 . N A 57.0289 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=60;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:60:-5.69857,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_6020 109 . G T 194.772 . AB=0.142857;ABP=41.7866;AC=4;AF=0.666667;AN=6;AO=10;CIGAR=1X;DP=40;DPB=40;DPRA=0;EPP=24.725;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.4;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=346;QR=1030;RO=30;RPL=0;RPP=24.725;RPPR=68.1545;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:15,3:15:515:3:104:-4.28455,0,-41.2578 0/1:17:15,2:15:515:2:68:-1.34042,0,-41.5593 1/1:5:0,5:0:0:5:174:-16.002,-1.50515,0 dDocent_Contig_6021 7 . A T 725.888 . AB=0.170886;ABP=300.31;AC=3;AF=0.5;AN=6;AO=54;CIGAR=1X;DP=316;DPB=316;DPRA=0;EPP=120.27;EPPR=571.936;GTI=0;LEN=1;MEANALT=1;MQM=39.9815;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.0555556;PAIREDR=0.977099;PAO=0;PQA=0;PQR=0;PRO=0;QA=2049;QR=9910;RO=262;RPL=0;RPP=120.27;RPPR=571.936;RPR=54;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=262;SRP=571.936;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:88:71,17:71:2666:17:654:-27.4958,0,-213.653 0/1:111:89,22:89:3359:22:821:-36.3398,0,-269.049 0/1:117:102,15:102:3885:15:574:-12.47,0,-314.534 dDocent_Contig_6022 8 . T A 81.9073 . AB=0.122449;ABP=63.6786;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X3M1X2M1X2M1D2M1X3M1I2M;DP=177;DPB=177.053;DPRA=0;EPP=16.0391;EPPR=169.864;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=59.4228;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.624161;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=5826;RO=149;RPL=0;RPP=16.0391;RPPR=326.56;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=128;SRP=169.864;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:49:37,6,5,0:37:1446:6,5,0:239,199,0:-8.54566,0,-117.033,-3.29603,-102.452,-120.629,-19.6838,-118.839,-122.135,-138.521 0|0:97:85,0,8,0:85:3312:0,8,0:0,319,0:-0.693332,-26.2809,-298.333,0,-272.061,-269.653,-26.2809,-298.333,-272.061,-298.333 0|0:31:27,0,1,3:27:1068:0,1,3:0,34,121:-1.89485,-10.0227,-97.926,-7.29508,-95.1841,-94.8831,0,-87.9508,-85.2091,-87.0477 dDocent_Contig_6023 29 . C A 39.7527 . AB=0.173913;ABP=24.253;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=26;DPB=26;DPRA=3.83333;EPP=5.18177;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=48.75;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=880;RO=22;RPL=0;RPP=11.6962;RPPR=50.7827;RPR=4;RUN=1;SAF=3;SAP=5.18177;SAR=1;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3,0:3:120:0:0:0,-0.90309,-11.1873 0/1:13:11,2:11:435:2:79:-1.39945,0,-35.5883 0/1:10:8,2:8:325:2:82:-4.76938,0,-26.6091 dDocent_Contig_6024 12 . A T 493.292 . AB=0.59375;ABP=5.45321;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=32;DPB=32;DPRA=0;EPP=44.2683;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=51.8947;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.947368;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=752;QR=511;RO=13;RPL=0;RPP=44.2683;RPPR=31.2394;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:5,3:5:196:3:122:-6.63474,0,-15.6057 0/1:12:1,11:1:40:11:433:-30.8911,0,-0.383319 0/1:12:7,5:7:275:5:197:-14.4917,0,-21.5034 dDocent_Contig_6025 23 . C T 1577.28 . AB=0.189189;ABP=34.0565;AC=0;AF=0;AN=6;AO=7;CIGAR=10M1X1M1X7M1X;DP=123;DPB=122.762;DPRA=0;EPP=18.2106;EPPR=37.7539;GTI=0;LEN=1;MEANALT=7;MQM=60;MQMR=60;NS=3;NUMALT=9;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=274;QR=604;RO=16;RPL=0;RPP=18.2106;RPPR=37.7539;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:37:3,7,3,0,0,8,1,10,0,4:3:102:7,3,0,0,8,1,10,0,4:274,118,0,0,300,40,371,0,163:-45.7447,-24.1152,-30.2746,-36.9405,-22.6736,-44.3043,-46.6478,-32.3818,-45.2074,-54.9149,-46.6478,-32.3818,-45.2074,-54.9149,-54.9149,-22.083,-7.81511,-20.6412,-30.349,-30.349,-27.9407,-43.3521,-29.0859,-41.9116,-51.6192,-51.6192,-27.0532,-51.3181,-16.2989,-2.0306,-14.8565,-24.5642,-24.5642,0,-21.2684,-21.5539,-46.6478,-32.3818,-45.2074,-54.9149,-54.9149,-30.349,-51.6192,-24.5642,-54.9149,-33.197,-18.9295,-31.756,-41.464,-41.464,-16.8972,-38.1682,-11.1124,-41.464,-40.2599 0|0:74:7,0,0,0,5,20,6,0,5,20:7:269:0,0,0,5,20,6,0,5,20:0,0,0,175,778,209,0,192,781:-103.948,-106.055,-128.137,-106.055,-128.137,-128.137,-106.055,-128.137,-128.137,-128.137,-91.8223,-113.903,-113.903,-113.903,-112.398,-42.1183,-64.2004,-64.2004,-64.2004,-49.9675,-58.1798,-89.0655,-111.147,-111.147,-111.147,-96.9136,-47.2108,-109.34,-106.055,-128.137,-128.137,-128.137,-113.903,-64.2004,-111.147,-128.137,-90.295,-112.376,-112.376,-112.376,-98.1432,-48.4395,-95.3863,-112.376,-110.871,-41.8588,-63.9409,-63.9409,-63.9409,-49.708,0,-46.9513,-63.9409,-48.1799,-57.9203 0|0:12:6,0,0,2,0,0,0,0,0,4:6:233:0,0,2,0,0,0,0,0,4:0,0,76,0,0,0,0,0,164:-11.75,-13.5562,-32.6958,-13.5562,-32.6958,-32.6958,-7.33358,-26.4662,-26.4662,-25.8641,-13.5562,-32.6958,-32.6958,-26.4662,-32.6958,-13.5562,-32.6958,-32.6958,-26.4662,-32.6958,-32.6958,-13.5562,-32.6958,-32.6958,-26.4662,-32.6958,-32.6958,-32.6958,-13.5562,-32.6958,-32.6958,-26.4662,-32.6958,-32.6958,-32.6958,-32.6958,-13.5562,-32.6958,-32.6958,-26.4662,-32.6958,-32.6958,-32.6958,-32.6958,-32.6958,0,-19.1517,-19.1517,-12.9212,-19.1517,-19.1517,-19.1517,-19.1517,-19.1517,-17.9475 dDocent_Contig_6027 37 . C T 49.5874 . AB=0.333333;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=115;DPB=115;DPRA=2.11364;EPP=11.6962;EPPR=244.044;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=4418;RO=111;RPL=0;RPP=11.6962;RPPR=244.044;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=111;SRP=244.044;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:4,2:4:163:2:81:-5.87955,0,-13.2522 0/0:87:85,2:85:3387:2:81:0,-18.5039,-297.204 0/0:22:22,0:22:868:0:0:0,-6.62266,-78.4262 dDocent_Contig_6029 10 . C G 398.204 . AB=0.394737;ABP=6.66752;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=52;DPB=52;DPRA=0;EPP=37.7539;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1.33333;MQM=50.625;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=633;QR=1376;RO=35;RPL=0;RPP=37.7539;RPPR=79.0118;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:13,1:13:509:1:37:0,-0.527938,-42.4662 0/1:20:14,5:14:563:5:199:-11.6757,0,-45.1613 0/1:18:8,10:8:304:10:397:-30.4618,0,-22.295 dDocent_Contig_6031 93 . C T 184.207 . AB=0.346154;ABP=8.35546;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=29;DPB=29;DPRA=4.33333;EPP=14.8328;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=57;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.888889;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=313;QR=679;RO=20;RPL=9;RPP=22.5536;RPPR=46.4397;RPR=0;RUN=1;SAF=8;SAP=14.8328;SAR=1;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:11,8:11:370:8:274:-19.2741,0,-27.9053 0/1:7:6,1:6:205:1:39:-1.09551,0,-16.6778 0/0:3:3,0:3:104:0:0:0,-0.90309,-9.70309 dDocent_Contig_6032 46 . A C 141.496 . AB=0.333333;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=47;DPB=47;DPRA=1.24138;EPP=3.0103;EPPR=3.06326;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=0.97561;PAO=0;PQA=0;PQR=0;PRO=0;QA=227;QR=1494;RO=41;RPL=0;RPP=16.0391;RPPR=92.0407;RPR=6;RUN=1;SAF=3;SAP=3.0103;SAR=3;SRF=21;SRP=3.06326;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:203:0:0:0,-1.80618,-18.5994 0/0:23:23,0:23:848:0:0:0,-6.92369,-76.6319 0/1:18:12,6:12:443:6:227:-15.3713,0,-34.7902 dDocent_Contig_6033 98 . N A 92.6648 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=2X;DP=3;DPB=5.5;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.29832;PAIRED=1;PAIREDR=0;PAO=5;PQA=175;PQR=0;PRO=0;QA=103;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:3:0,3:0:0:3:103:-9.26431,-0.90309,0 .:.:.:.:.:.:.:. dDocent_Contig_6034 25 . A G 138.014 . AB=0.25;ABP=16.0391;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=62;DPB=62;DPRA=1.22222;EPP=18.2106;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=251;QR=2219;RO=55;RPL=0;RPP=18.2106;RPPR=122.441;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:19,1:19:775:1:8:0,-5.2206,-69.2685 0/0:18:18,0:18:729:0:0:0,-5.41854,-65.9338 0/1:24:18,6:18:715:6:243:-15.0232,0,-57.4474 dDocent_Contig_6035 88 . T C 56.5713 . AB=0.3;ABP=6.48466;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=55;DPB=55;DPRA=0.444444;EPP=9.52472;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=106;QR=1751;RO=52;RPL=3;RPP=9.52472;RPPR=115.927;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:40,0:40:1348:0:0:0,-12.0412,-121.609 0/1:10:7,3:7:229:3:106:-6.8788,0,-17.9194 0/0:5:5,0:5:174:0:0:0,-1.50515,-16.0015 dDocent_Contig_6036 17 . G A 2871.76 . AB=0.515957;ABP=3.42611;AC=3;AF=0.5;AN=6;AO=97;CIGAR=1X;DP=188;DPB=188;DPRA=0;EPP=213.643;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.391753;PAIREDR=0.681319;PAO=0;PQA=0;PQR=0;PRO=0;QA=3852;QR=3616;RO=91;RPL=0;RPP=213.643;RPPR=200.614;RPR=97;RUN=1;SAF=97;SAP=213.643;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:94:42,52:42:1680:52:2052:-156.58,0,-123.129 0/1:33:11,22:11:425:22:880:-69.5751,0,-28.6652 0/1:61:38,23:38:1511:23:920:-64.737,0,-117.866 dDocent_Contig_6037 176 . G A 111.722 . AB=0.333333;ABP=6.62942;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=23;DPB=23;DPRA=0.9375;EPP=13.8677;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=191;QR=716;RO=18;RPL=5;RPP=13.8677;RPPR=42.0968;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:323:0:0:0,-2.40824,-29.439 0/1:8:4,4:4:161:4:153:-11.7326,0,-12.4672 0/1:7:6,1:6:232:1:38:-1.69006,0,-19.1405 dDocent_Contig_6038 128 . C T 59.4568 . AB=0.3;ABP=6.48466;AC=1;AF=0.25;AN=4;AO=3;CIGAR=1X;DP=24;DPB=24;DPRA=0.714286;EPP=9.52472;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=111;QR=786;RO=21;RPL=0;RPP=9.52472;RPPR=48.6112;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:517:0:0:0,-4.21442,-46.8673 0/1:10:7,3:7:269:3:111:-7.34362,0,-21.5639 ./.:.:.:.:.:.:.:. dDocent_Contig_6039 45 . C T 665.317 . AB=0.520833;ABP=3.19126;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=48;DPB=48;DPRA=0;EPP=57.2971;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=929;QR=910;RO=23;RPL=0;RPP=57.2971;RPPR=52.9542;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:9,15:9:364:15:537:-41.4184,0,-25.9002 0/1:6:5,1:5:184:1:39:-2.09038,0,-15.1084 0/1:18:9,9:9:362:9:353:-26.7112,0,-27.5251 dDocent_Contig_6040 107 . N G 43.581 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X3M1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=24;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=61;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:61:-4.35376,-0.60206,0 .:.:.:.:.:.:.:. dDocent_Contig_6041 14 . T C 1125.56 . AB=0.449275;ABP=4.55236;AC=3;AF=0.5;AN=6;AO=31;CIGAR=1X1M1X2M;DP=69;DPB=69;DPRA=0;EPP=70.3259;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1199;QR=866;RO=23;RPL=0;RPP=70.3259;RPPR=52.9542;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:26:9,0,17:9:341:0,17:0,660:-51.9033,-54.6125,-82.5681,0,-28.3373,-23.2198 0|1:10:2,1,7:2:77:1,7:39,273:-21.8376,-19.2337,-25.254,0,-3.11155,-4.21187 0|1:33:12,14,7:12:448:14,7:560,266:-42.5311,0,-32.46,-24.3378,-14.8598,-58.897 dDocent_Contig_6042 83 . A G 134.982 . AB=0.35;ABP=6.91895;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=26;DPB=26;DPRA=1.66667;EPP=18.2106;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=235;QR=657;RO=19;RPL=7;RPP=18.2106;RPPR=44.2683;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:4:3,1:3:101:1:33:-2.09501,0,-8.21948 0/0:6:6,0:6:210:0:0:0,-1.80618,-19.2425 0/1:16:10,6:10:346:6:202:-13.6937,0,-26.658 dDocent_Contig_6043 13 . C T 103.161 . AB=0.333333;ABP=5.9056;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=32;DPB=32;DPRA=1.2;EPP=3.0103;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=1082;RO=27;RPL=0;RPP=11.6962;RPPR=61.6401;RPR=4;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4,0:4:154:0:0:0,-1.20412,-14.2314 0/1:12:8,4:8:318:4:164:-11.5375,0,-25.3734 0/0:16:15,0:15:610:0:0:0,-4.51545,-55.1087 dDocent_Contig_6044 28 . A G 39.7355 . AB=0.25;ABP=7.35324;AC=1;AF=0.25;AN=4;AO=2;CIGAR=1X;DP=19;DPB=19;DPRA=0.727273;EPP=7.35324;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=680;RO=17;RPL=0;RPP=7.35324;RPPR=39.9253;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:446:0:0:0,-3.31133,-40.4956 ./.:.:.:.:.:.:.:. 0/1:8:6,2:6:234:2:82:-5.37144,0,-19.0184 dDocent_Contig_6045 10 . A T 299.816 . AB=0.237288;ABP=38.3795;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=59;DPB=59;DPRA=0;EPP=33.4109;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=559;QR=1800;RO=45;RPL=0;RPP=33.4109;RPPR=100.727;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:17,3:17:675:3:120:-5.1673,0,-55.0593 0/1:24:15,9:15:600:9:358:-25.3583,0,-47.1141 0/1:15:13,2:13:525:2:81:-3.17028,0,-43.0818 dDocent_Contig_6046 61 . G A 55.8751 . AB=0.230769;ABP=11.1951;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=32;DPB=32;DPRA=3.5;EPP=11.6962;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=1100;RO=28;RPL=4;RPP=11.6962;RPPR=63.8115;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4,0:4:150:0:0:0,-1.20412,-13.8617 0/0:15:14,1:14:556:1:8:0,-3.71545,-49.5829 0/1:13:10,3:10:394:3:115:-6.80899,0,-31.8989 dDocent_Contig_6047 9 . T A 207.732 . AB=0.222222;ABP=9.04217;AC=2;AF=0.333334;AN=6;AO=2;CIGAR=1X1M;DP=21;DPB=21;DPRA=9;EPP=7.35324;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=505;RO=13;RPL=0;RPP=7.35324;RPPR=31.2394;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:1:1,0,0:1:40:0,0:0,0:0,-0.30103,-3.99568,-0.30103,-3.99568,-3.99568 0|1:9:7,0,2:7:271:0,2:0,78:-4.6942,-6.80141,-29.0613,0,-22.6489,-22.0469 0|1:11:5,6,0:5:194:6,0:237,0:-18.3919,0,-14.521,-19.897,-16.3272,-35.8334 dDocent_Contig_6048 76 . C T 461.706 . AB=0.409091;ABP=6.16881;AC=4;AF=0.666667;AN=6;AO=18;CIGAR=4M1X;DP=44;DPB=51;DPRA=0;EPP=42.0968;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=638;QR=647;RO=19;RPL=18;RPP=42.0968;RPPR=44.2683;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:6:0,1,5:0:0:1,5:35,178:-17.71,-14.8633,-14.5623,-3.1976,0,-1.69245 0|1:28:11,6,11:11:369:6,11:211,388:-28.2824,-14.418,-42.4907,0,-12.6952,-26.5656 0|1:10:8,0,2:8:278:0,2:0,72:-3.82642,-6.23466,-28.8271,0,-22.9498,-22.3477 dDocent_Contig_6049 73 . C A 94.9754 . AB=0.3125;ABP=7.89611;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=52;DPB=52;DPRA=0.888889;EPP=13.8677;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=169;QR=1811;RO=47;RPL=5;RPP=13.8677;RPPR=105.07;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:621:0:0:0,-4.81648,-56.2297 0/1:16:11,5:11:421:5:169:-10.7194,0,-33.4246 0/0:20:20,0:20:769:0:0:0,-6.0206,-69.5381 dDocent_Contig_6051 14 . T C 76.7315 . AB=0.375;ABP=4.09604;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=36;DPB=36;DPRA=0.571429;EPP=9.52472;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=1287;RO=33;RPL=0;RPP=9.52472;RPPR=74.6689;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:5,3:5:202:3:118:-8.59396,0,-16.1538 0/0:12:12,0:12:474:0:0:0,-3.61236,-43.0087 0/0:16:16,0:16:611:0:0:0,-4.81648,-55.3102 dDocent_Contig_6052 27 . G C 33.7793 . AB=0.121212;ABP=44.1367;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=80;DPB=80;DPRA=1.40426;EPP=11.6962;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=3015;RO=76;RPL=0;RPP=11.6962;RPPR=168.042;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:29,4:29:1152:4:154:-4.29857,0,-94.0244 0/0:18:18,0:18:715:0:0:0,-5.41854,-64.6763 0/0:29:29,0:29:1148:0:0:0,-8.72987,-103.602 dDocent_Contig_6053 8 . T C 437.045 . AB=0.103448;ABP=42.621;AC=0;AF=0;AN=6;AO=3;CIGAR=1X1M1X2M1X2M;DP=63;DPB=63;DPRA=0;EPP=3.73412;EPPR=68.1545;GTI=0;LEN=1;MEANALT=6;MQM=12;MQMR=48.4333;NS=3;NUMALT=6;ODDS=1.38778e-17;PAIRED=0;PAIREDR=0.766667;PAO=0;PQA=0;PQR=0;PRO=0;QA=36;QR=1173;RO=30;RPL=0;RPP=9.52472;RPPR=68.1545;RPR=3;RUN=1;SAF=2;SAP=3.73412;SAR=1;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:14:8,0,0,0,6,0,0:8:311:0,0,0,6,0,0:0,0,0,239,0,0:-17.6706,-20.0788,-43.0018,-20.0788,-43.0018,-43.0018,-20.0788,-43.0018,-43.0018,-43.0018,0,-23.3013,-23.3013,-23.3013,-21.4951,-20.0788,-43.0018,-43.0018,-43.0018,-23.3013,-43.0018,-20.0788,-43.0018,-43.0018,-43.0018,-23.3013,-43.0018,-43.0018 0|0:29:11,2,3,2,4,5,2:11:433:2,3,2,4,5,2:18,36,79,162,202,80:-13.3765,-16.1922,-35.8841,-15.1637,-34.944,-34.5475,-10.1766,-29.9777,-28.9423,-29.8854,-3.30323,-23.1098,-22.0745,-17.1069,-22.415,0,-19.81,-18.7747,-13.8058,-6.93171,-18.8138,-10.0868,-29.8881,-28.8527,-23.8875,-17.0173,-13.7161,-29.7959 0|0:20:11,0,0,1,2,0,6:11:429:0,0,1,2,0,6:0,0,38,79,0,239:-16.374,-19.6853,-54.9445,-19.6853,-54.9445,-54.9445,-16.5708,-51.8286,-51.8286,-51.5276,-13.1845,-48.4433,-48.4433,-45.3275,-47.8412,-19.6853,-54.9445,-54.9445,-51.8286,-48.4433,-54.9445,0,-35.2622,-35.2622,-32.1464,-28.7604,-35.2622,-33.456 dDocent_Contig_6054 19 . T G 276.932 . AB=0.173913;ABP=87.981;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=92;DPB=92;DPRA=0;EPP=37.7539;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.986842;PAO=0;PQA=0;PQR=0;PRO=0;QA=644;QR=3023;RO=76;RPL=0;RPP=37.7539;RPPR=168.042;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:54,10:54:2160:10:401:-17.1825,0,-175.311 0/1:12:8,4:8:322:4:163:-11.4461,0,-25.7358 0/1:16:14,2:14:541:2:80:-2.77531,0,-44.2035 dDocent_Contig_6055 156 . T A 65.6515 . AB=0.272727;ABP=7.94546;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=44;DPB=44;DPRA=0.666667;EPP=9.52472;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=1623;RO=41;RPL=0;RPP=9.52472;RPPR=92.0407;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=92.0407;SRR=41;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1,0:1:35:0:0:0,-0.30103,-3.49863 0/1:11:8,3:8:308:3:119:-7.78406,0,-24.7694 0/0:32:32,0:32:1280:0:0:0,-9.63296,-115.469 dDocent_Contig_6056 180 . N G 77.84 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_6058 15 . A C 834.662 . AB=0.227273;ABP=130.93;AC=2;AF=0.333333;AN=6;AO=45;CIGAR=6M1X2M;DP=198;DPB=201.444;DPRA=0;EPP=43.5927;EPPR=110.945;GTI=0;LEN=1;MEANALT=7.66667;MQM=23.8222;MQMR=49.9765;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0.6;PAO=0;PQA=0;PQR=0;PRO=0;QA=899;QR=3295;RO=85;RPL=0;RPP=100.727;RPPR=187.585;RPR=45;RUN=1;SAF=37;SAP=43.5927;SAR=8;SRF=75;SRP=110.945;SRR=10;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:60:20,0,21,10,3:20:772:0,21,10,3:0,791,166,119:-58.2202,-64.2408,-119.196,0,-55.0007,-48.6791,-54.6844,-109.62,-45.4395,-106.61,-54.4381,-109.396,-45.1962,-99.8218,-108.493 0|1:64:33,0,2,13,6:33:1288:0,2,13,6:0,78,266,228:-7.39367,-17.3277,-116.049,-10.9199,-109.648,-109.046,0,-98.7018,-92.3015,-94.7884,-4.95851,-103.687,-97.286,-86.3454,-101.881 0|1:74:32,4,7,22,0:32:1235:4,7,22,0:161,270,467,0:-21.569,-27.3763,-109.914,-9.03458,-88.9738,-90.6924,0,-79.9366,-61.6102,-77.1344,-31.202,-111.118,-92.7996,-83.7571,-114.944 dDocent_Contig_6059 11 . T C 232.431 . AB=0.277778;ABP=18.4519;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=56;DPB=56;DPRA=0;EPP=26.8965;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=436;QR=1742;RO=45;RPL=0;RPP=26.8965;RPPR=100.727;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:19,7:19:736:7:275:-17.2919,0,-58.7408 0/1:10:7,3:7:253:3:121:-8.2699,0,-20.1055 0/0:20:19,1:19:753:1:40:0,-2.02492,-64.0988 dDocent_Contig_6060 98 . N A 111.916 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:121:-11.1905,-1.20412,0 ./.:.:.:.:.:.:.:. dDocent_Contig_6061 11 . T A 179.759 . AB=0.0881834;ABP=838.238;AC=2;AF=0.333333;AN=6;AO=69;CIGAR=1X2M;DP=817;DPB=817;DPRA=0;EPP=152.842;EPPR=1496.98;GTI=0;LEN=1;MEANALT=3.66667;MQM=59.7826;MQMR=59.9898;NS=3;NUMALT=2;ODDS=5.55112e-17;PAIRED=0.0724638;PAIREDR=0.0479651;PAO=0;PQA=0;PQR=0;PRO=0;QA=2692;QR=26900;RO=688;RPL=0;RPP=152.842;RPPR=1496.98;RPR=69;RUN=1;SAF=69;SAP=152.842;SAR=0;SRF=688;SRP=1496.98;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:310:260,23,27:260:10174:23,27:894,1060:-8.9142,-13.7221,-843.3,0,-763.044,-828.378 0|0:250:218,11,19:218:8465:11,19:429,725:0,-30.3598,-722.552,-6.15688,-666.391,-695.934 0|1:257:210,15,23:210:8261:15,23:577,907:-11.3805,-27.2347,-702.215,0,-632.136,-672.577 dDocent_Contig_6062 40 . A G 973.196 . AB=0.3125;ABP=37.211;AC=2;AF=0.333333;AN=6;AO=35;CIGAR=2M1X2M;DP=112;DPB=146.2;DPRA=0;EPP=79.0118;EPPR=128.956;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1372;QR=2262;RO=58;RPL=0;RPP=79.0118;RPPR=128.956;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:30:8,6,16:8:320:6,16:215,639:-50.2477,-35.1338,-59.6883,0,-8.8686,-21.5676 0|1:44:35,0,9:35:1355:0,9:0,331:-16.8772,-27.4133,-138.728,0,-111.686,-108.977 0|0:38:15,13,10:15:587:13,10:471,402:-33.9113,0,-44.3423,-5.2819,-15.1238,-50.5492 dDocent_Contig_6063 33 . C T 133.913 . AB=0;ABP=0;AC=0;AF=0;AN=6;AO=2;CIGAR=1X1M1X1M1X;DP=45;DPB=45;DPRA=0;EPP=7.35324;EPPR=74.6689;GTI=0;LEN=1;MEANALT=2;MQM=17;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.939394;PAO=0;PQA=0;PQR=0;PRO=0;QA=57;QR=1301;RO=33;RPL=0;RPP=7.35324;RPPR=74.6689;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:10:5,0,5:5:196:0,5:0,182:-13.1283,-14.6334,-30.7723,0,-16.5101,-15.0049 0|0:17:14,2,1:14:554:2,1:57,35:0,-1.9553,-46.9959,-1.35203,-44.7987,-46.8476 0|0:18:14,0,3:14:551:0,3:0,88:-2.5719,-6.78632,-52.1782,0,-45.3401,-44.437 dDocent_Contig_6064 102 . N C 93.3282 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=6X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.29832;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=100;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,3:0:0:3:100:-9.33066,-0.90309,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_6065 10 . T G 669.76 . AB=0.444444;ABP=4.45795;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=54;DPB=54;DPRA=0;EPP=55.1256;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=954;QR=1151;RO=30;RPL=0;RPP=55.1256;RPPR=68.1545;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:16,6:16:616:6:239:-15.2616,0,-49.1484 0/1:22:7,15:7:270:15:599:-47.6259,0,-18.0416 0/1:10:7,3:7:265:3:116:-7.80521,0,-21.1939 dDocent_Contig_6066 53 . G A 811.066 . AB=0.534483;ABP=3.60933;AC=3;AF=0.5;AN=6;AO=31;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=70.3259;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1125;QR=959;RO=27;RPL=31;RPP=70.3259;RPPR=61.6401;RPR=0;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:15,6:15:521:6:220:-13.8339,0,-40.8946 0/1:28:10,18:10:368:18:657:-51.0338,0,-25.0401 0/1:9:2,7:2:70:7:248:-19.9551,0,-3.93806 dDocent_Contig_6067 55 . C T 51.8762 . AB=0.666667;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=45;DPB=45;DPRA=1.10714;EPP=11.6962;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=145;QR=1517;RO=41;RPL=4;RPP=11.6962;RPPR=92.0407;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:525:0:0:0,-4.21442,-47.5885 0/0:28:26,2:26:953:2:68:0,-1.97091,-79.6209 0/1:3:1,2:1:39:2:77:-6.40574,0,-2.99347 dDocent_Contig_6068 17 . C A 97.9066 . AB=0.363636;ABP=4.78696;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=28;DPB=28;DPRA=1.29412;EPP=11.6962;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.25;PAIREDR=0.916667;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=966;RO=24;RPL=0;RPP=11.6962;RPPR=55.1256;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:520:0:0:0,-3.91339,-47.1474 0/1:11:7,4:7:285:4:155:-11.0121,0,-22.7131 0/0:4:4,0:4:161:0:0:0,-1.20412,-14.8749 dDocent_Contig_6069 42 . G C 398.427 . AB=0.565217;ABP=3.86001;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=35.5824;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.981132;PAO=0;PQA=0;PQR=0;PRO=0;QA=608;QR=2093;RO=53;RPL=0;RPP=35.5824;RPPR=118.098;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:10,13:10:377:13:526:-40.7635,0,-27.3494 0/0:20:19,1:19:754:1:41:0,-1.92603,-64.0882 0/0:25:24,1:24:962:1:41:0,-3.43118,-82.7855 dDocent_Contig_6070 42 . G A 63.1083 . AB=0.16;ABP=28.1125;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=111;DPB=111;DPRA=0.581395;EPP=11.6962;EPPR=163.76;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.785047;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=4198;RO=107;RPL=0;RPP=11.6962;RPPR=235.358;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=98;SRP=163.76;SRR=9;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:34,0:34:1315:0:0:0,-10.235,-118.614 0/1:25:21,4:21:804:4:163:-7.53268,0,-65.1487 0/0:52:52,0:52:2079:0:0:0,-15.6536,-187.295 dDocent_Contig_6071 11 . G A 377.891 . AB=0.466667;ABP=3.15506;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=29;DPB=29;DPRA=1.11111;EPP=29.068;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=472;QR=668;RO=17;RPL=0;RPP=29.068;RPPR=39.9253;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:200:-18.3795,-1.50515,0 0/0:9:9,0:9:352:0:0:0,-2.70927,-32.0402 0/1:15:8,7:8:316:7:272:-20.3302,0,-24.29 dDocent_Contig_6072 9 . G A 4679.58 . AB=0.400531;ABP=35.4096;AC=4;AF=0.666667;AN=6;AO=151;CIGAR=1X20M;DP=377;DPB=378.095;DPRA=0;EPP=330.903;EPPR=172.385;GTI=0;LEN=1;MEANALT=9.66667;MQM=60;MQMR=60;NS=3;NUMALT=6;ODDS=0;PAIRED=1;PAIREDR=0.987179;PAO=0;PQA=0;PQR=0;PRO=0;QA=5738;QR=3005;RO=78;RPL=0;RPP=330.903;RPPR=172.385;RPR=151;RUN=1;SAF=151;SAP=330.903;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:96:36,0,5,17,7,3,22:36:1384:0,5,17,7,3,22:0,198,657,215,120,846:-58.6273,-69.4644,-183.089,-53.165,-166.791,-165.286,-15.4956,-129.125,-112.826,-124.007,-52.2382,-165.86,-149.562,-111.897,-163.753,-59.5777,-173.203,-156.905,-119.239,-155.974,-172.3,0,-113.631,-97.3321,-59.6645,-96.4033,-103.745,-107.008 1|1:130:9,7,0,13,0,0,89:9:348:7,0,13,0,0,89:264,0,486,0,0,3377:-285.411,-266.486,-292.964,-288.121,-295.071,-316.706,-248.325,-255.276,-276.91,-272.997,-288.121,-295.071,-316.706,-276.91,-316.706,-288.121,-295.071,-316.706,-276.91,-316.706,-316.706,-11.2079,-18.1612,-39.7964,0,-39.7964,-39.7964,-13.0047 0|1:151:33,0,3,29,0,36,40:33:1273:0,3,29,0,36,40:0,118,1127,0,1432,1515:-127.636,-137.57,-242.107,-127.863,-232.4,-231.497,-44.9607,-149.498,-139.791,-140.768,-137.57,-242.107,-232.4,-149.498,-242.107,-19.6636,-124.202,-114.495,-31.5915,-124.202,-113.365,-13.3698,-117.906,-108.199,-25.2972,-117.906,0,-105.864 dDocent_Contig_6073 9 . G T 87.0008 . AB=0.217391;ABP=18.9659;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=32;DPB=32;DPRA=1.27778;EPP=13.8677;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.1111;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.6;PAIREDR=0.962963;PAO=0;PQA=0;PQR=0;PRO=0;QA=191;QR=1003;RO=27;RPL=0;RPP=13.8677;RPPR=61.6401;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:339:0:0:0,-2.70927,-30.8646 0/1:9:7,2:7:264:2:78:-4.6942,0,-21.4103 0/1:14:11,3:11:400:3:113:-6.32455,0,-31.8037 dDocent_Contig_6074 12 . T C 107.338 . AB=0.136364;ABP=28.2783;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X4M2X2M1X1M;DP=44;DPB=44;DPRA=2.44444;EPP=9.52472;EPPR=65.983;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=110;QR=1115;RO=29;RPL=0;RPP=9.52472;RPPR=65.983;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:9:7,0,0,0:7:268:0,0,0:0,0,0:0,-2.10721,-24.1072,-2.10721,-24.1072,-24.1072,-2.10721,-24.1072,-24.1072,-24.1072 0|0:13:6,3,4,0:6:234:3,4,0:116,135,0:-8.82386,-1.07776,-19.4458,0,-9.71045,-18.0332,-10.63,-20.3489,-19.2373,-29.8816 0|1:22:16,0,0,3:16:613:0,0,3:0,0,110:-4.21642,-9.0329,-59.3814,-9.0329,-59.3814,-59.3814,0,-50.3908,-50.3908,-49.4877 dDocent_Contig_6075 167 . A C 260.142 . AB=0.333333;ABP=6.62942;AC=4;AF=0.666667;AN=6;AO=9;CIGAR=1X;DP=19;DPB=19;DPRA=0;EPP=22.5536;EPPR=24.725;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=352;QR=396;RO=10;RPL=9;RPP=22.5536;RPPR=24.725;RPR=0;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=24.725;SRR=10;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:5,1:5:194:1:41:-2.28839,0,-16.0253 1/1:4:0,4:0:0:4:149:-13.7683,-1.20412,0 0/1:9:5,4:5:202:4:162:-12.2577,0,-15.8528 dDocent_Contig_6076 8 . T A 125.151 . AB=0.384615;ABP=4.51363;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=30;DPB=30;DPRA=1.52941;EPP=13.8677;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=192;QR=965;RO=25;RPL=0;RPP=13.8677;RPPR=57.2971;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:193:0:0:0,-1.50515,-17.7414 0/0:12:12,0:12:464:0:0:0,-3.61236,-42.1116 0/1:13:8,5:8:308:5:192:-13.7368,0,-24.1684 dDocent_Contig_6077 28 . G T 112.454 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=58;DPB=58;DPRA=0.32;EPP=11.6962;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=2115;RO=54;RPL=0;RPP=11.6962;RPPR=120.27;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:746:0:0:0,-5.71957,-67.4639 0/1:8:4,4:4:162:4:161:-12.4672,0,-12.5587 0/0:31:31,0:31:1207:0:0:0,-9.33193,-108.901 dDocent_Contig_6078 12 . A C 1915.25 . AB=0.0778443;ABP=520.029;AC=0;AF=0;AN=6;AO=26;CIGAR=1X1M1X3M1X6M1X9M;DP=334;DPB=334;DPRA=0;EPP=59.4686;EPPR=105.07;GTI=0;LEN=1;MEANALT=20.6667;MQM=24.1923;MQMR=60;NS=3;NUMALT=9;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=629;QR=1833;RO=47;RPL=0;RPP=59.4686;RPPR=105.07;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:123:16,3,9,3,18,0,7,20,3,3:16:624:3,9,3,18,0,7,20,3,3:110,362,83,685,0,262,761,118,93:-61.9591,-57.9198,-108.314,-36.938,-79.3802,-85.5267,-61.0227,-103.464,-82.4829,-111.416,-10.5923,-53.0351,-32.0532,-56.138,-56.4723,-66.7756,-109.217,-88.2359,-112.319,-61.8909,-118.073,-45.3395,-87.7812,-66.8,-90.8838,-40.4548,-96.6369,-94.5297,-4.88463,-47.3276,-26.3457,-50.4306,0,-56.1834,-34.7473,-50.1628,-57.0896,-99.5312,-78.5501,-102.634,-52.2049,-108.387,-86.9511,-46.4974,-107.484,-60.1231,-102.564,-81.5834,-105.667,-55.2385,-111.42,-89.9844,-49.531,-101.734,-110.517 0|0:92:15,1,4,7,15,0,0,18,2,7:15:591:1,4,7,15,0,0,18,2,7:37,160,148,594,0,0,623,80,226:-44.3878,-45.8769,-94.2086,-35.7201,-81.3274,-83.1495,-39.592,-85.1965,-75.0408,-86.1153,0,-45.6107,-35.4539,-39.3257,-44.1216,-48.9032,-94.5096,-84.3536,-88.2225,-48.637,-97.5357,-48.9032,-94.5096,-84.3536,-88.2225,-48.637,-97.5357,-97.5357,-0.667064,-46.2753,-36.1188,-39.9922,-0.400742,-49.3014,-49.3014,-43.8829,-42.328,-87.9348,-77.7787,-81.648,-42.0618,-90.961,-90.961,-42.7265,-90.3589,-32.303,-77.9095,-67.7534,-71.6239,-32.0368,-80.9356,-80.9356,-32.7027,-74.3608,-78.8284 0|0:119:16,6,2,16,4,7,2,29,18,1:16:618:6,2,16,4,7,2,29,18,1:236,82,398,153,262,75,1108,679,24:-88.8145,-74.3304,-123.288,-86.8613,-118.325,-137.022,-66.9635,-98.4251,-110.955,-112.908,-81.0764,-112.54,-125.07,-105.171,-130.636,-73.899,-105.362,-117.893,-97.994,-112.108,-122.555,-87.4869,-118.95,-131.481,-111.58,-125.696,-118.518,-137.648,-4.75052,-36.2169,-48.7483,-28.8538,-42.9633,-35.7859,-49.374,-46.7884,-38.1152,-69.58,-82.1109,-62.2137,-76.326,-69.1486,-82.7365,0,-83.462,-92.0433,-123.506,-136.037,-116.137,-130.252,-123.075,-136.662,-53.9308,-87.293,-142.505 dDocent_Contig_6079 14 . G A 481.688 . AB=0.150754;ABP=213.84;AC=2;AF=0.333333;AN=6;AO=35;CIGAR=1X;DP=264;DPB=264;DPRA=0;EPP=79.0118;EPPR=410.073;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=51.009;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.166667;PAO=0;PQA=0;PQR=0;PRO=0;QA=1403;QR=8823;RO=222;RPL=0;RPP=79.0118;RPPR=485.077;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=213;SRP=410.073;SRR=9;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:126:106,16:106:4179:16:644:-21.1797,0,-308.438 0/0:65:57,5:57:2285:5:193:0,-1.32034,-173.35 0/1:73:59,14:59:2359:14:566:-29.3076,0,-176.935 dDocent_Contig_6081 12 . A G 357.448 . AB=0.0652174;ABP=78.5398;AC=0;AF=0;AN=6;AO=3;CIGAR=2X2M1X3M1X;DP=57;DPB=57;DPRA=0;EPP=9.52472;EPPR=68.1545;GTI=0;LEN=1;MEANALT=3.5;MQM=46;MQMR=60;NS=3;NUMALT=4;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=1163;RO=30;RPL=0;RPP=9.52472;RPPR=68.1545;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:30:15,3,3,2,7:15:582:3,3,2,7:25,118,79,278:-18.4322,-22.3911,-69.3003,-13.2242,-60.4963,-60.1802,-16.5892,-63.8545,-54.7314,-63.8407,0,-47.315,-38.1818,-41.5426,-45.7886 0|0:11:6,1,3,0,1:6:237:1,3,0,1:39,116,0,40:-7.44192,-6.04072,-25.2499,0,-16.2975,-18.5996,-9.2481,-25.5509,-19.5027,-28.7568,-5.94904,-22.2547,-16.2069,-25.4607,-25.1597 0|0:16:9,0,5,1,0:9:344:0,5,1,0:0,198,39,0:-13.5874,-16.2967,-44.5116,0,-28.2113,-26.7062,-13.1611,-41.3742,-25.0737,-41.0731,-16.2967,-44.5116,-28.2113,-41.3742,-44.5116 dDocent_Contig_6083 58 . C T 157.315 . AB=0.347826;ABP=7.63648;AC=2;AF=0.5;AN=4;AO=8;CIGAR=1X;DP=23;DPB=23;DPRA=0;EPP=20.3821;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=272;QR=501;RO=15;RPL=0;RPP=20.3821;RPPR=35.5824;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=35.5824;SRR=15;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:8,4:8:271:4:143:-9.60909,0,-21.1083 0/1:11:7,4:7:230:4:129:-8.61731,0,-17.7107 ./.:.:.:.:.:.:.:. dDocent_Contig_6084 133 . G T 40.2243 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1M3D3M1X;DP=30;DPB=28.875;DPRA=0.5;EPP=9.52472;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=25.6667;MQMR=55.2593;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.851852;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=963;RO=27;RPL=0;RPP=9.52472;RPPR=61.6401;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:6:6,0:6:211:0:0:0,-1.80618,-19.3332 0|1:6:3,3:3:104:3:105:-5.24415,0,-7.89691 0|0:18:18,0:18:648:0:0:0,-5.41854,-55.5278 dDocent_Contig_6085 10 . G A 2221.53 . AB=0.0714286;ABP=70.0157;AC=0;AF=0;AN=6;AO=3;CIGAR=1X1M1X2M;DP=119;DPB=119;DPRA=0;EPP=9.52472;EPPR=44.2683;GTI=0;LEN=1;MEANALT=5;MQM=33;MQMR=60;NS=3;NUMALT=4;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=99;QR=715;RO=19;RPL=0;RPP=9.52472;RPPR=44.2683;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:42:9,3,8,3,18:9:342:3,8,3,18:99,313,115,684:-52.0072,-47.5281,-74.6759,-28.9709,-49.8376,-54.6181,-45.9,-66.7632,-48.2097,-73.0492,0,-20.8739,-2.30833,-19.2432,-22.6413 0|0:26:7,0,5,0,14:7:260:0,5,0,14:0,193,0,527:-40.6499,-42.7571,-64.0317,-26.9036,-48.179,-46.6739,-42.7571,-64.0317,-48.179,-64.0317,0,-21.2675,-5.41132,-21.2675,-17.0531 0|0:51:3,0,0,5,43:3:113:0,0,5,43:0,0,199,1605:-133.186,-134.089,-143.349,-134.089,-143.349,-143.349,-118.996,-128.256,-128.256,-126.751,-5.82569,-15.088,-15.088,0,-2.14372 dDocent_Contig_6086 87 . G C 1496.64 . AB=0.340659;ABP=43.1467;AC=3;AF=0.5;AN=6;AO=62;CIGAR=1X;DP=182;DPB=182;DPRA=0;EPP=137.642;EPPR=263.587;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2302;QR=4403;RO=120;RPL=62;RPP=137.642;RPPR=263.587;RPR=0;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:44,21:44:1666:21:794:-52.2194,0,-130.641 0/1:37:28,9:28:997:9:343:-20.0888,0,-78.8959 0/1:80:48,32:48:1740:32:1165:-81.0724,0,-132.795 dDocent_Contig_6087 71 . A G 31.7162 . AB=0.2;ABP=10.8276;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=71;DPB=71;DPRA=0.327869;EPP=7.35324;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=2668;RO=69;RPL=2;RPP=7.35324;RPPR=152.842;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:1002:0:0:0,-7.82678,-90.4787 0/0:35:35,0:35:1377:0:0:0,-10.536,-124.187 0/1:10:8,2:8:289:2:78:-4.39317,0,-23.3437 dDocent_Contig_6088 91 . T G 61.6726 . AB=0.375;ABP=4.09604;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=19;DPB=19;DPRA=1.45455;EPP=9.52472;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=558;RO=16;RPL=3;RPP=9.52472;RPPR=37.7539;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2,0:2:67:0:0:0,-0.60206,-6.36284 0/1:8:5,3:5:180:3:105:-7.38765,0,-14.1435 0/0:9:9,0:9:311:0:0:0,-2.70927,-28.3245 dDocent_Contig_6089 8 . T C 44.0261 . AB=0.108108;ABP=101.724;AC=1;AF=0.166667;AN=6;AO=24;CIGAR=1X;DP=285;DPB=285;DPRA=0;EPP=55.1256;EPPR=561.112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.7088;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.992337;PAO=0;PQA=0;PQR=0;PRO=0;QA=924;QR=9971;RO=261;RPL=0;RPP=55.1256;RPPR=569.765;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=260;SRP=561.112;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:100:93,7:93:3537:7:267:0,-5.71009,-294.073 0/1:74:66,8:66:2508:8:306:-5.62424,0,-200.749 0/0:111:102,9:102:3926:9:351:0,-1.4625,-321.481 dDocent_Contig_6091 13 . A C 281.588 . AB=0.163793;ABP=116.9;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=116;DPB=116;DPRA=0;EPP=44.2683;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=730;QR=3740;RO=97;RPL=0;RPP=44.2683;RPPR=213.643;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:39,6:39:1490:6:223:-6.8812,0,-120.823 0/1:24:21,3:21:813:3:116:-3.59298,0,-66.2642 0/1:47:37,10:37:1437:10:391:-21.4004,0,-115.454 dDocent_Contig_6092 7 . A G 4501.52 . AB=0.311453;ABP=224.1;AC=3;AF=0.5;AN=6;AO=223;CIGAR=1X;DP=716;DPB=716;DPRA=0;EPP=487.249;EPPR=1060.54;GTI=0;LEN=1;MEANALT=1.66667;MQM=57.1614;MQMR=57.6782;NS=3;NUMALT=1;ODDS=0;PAIRED=0.946188;PAIREDR=0.910387;PAO=0;PQA=0;PQR=0;PRO=0;QA=7529;QR=18629;RO=491;RPL=0;RPP=487.249;RPPR=1069.2;RPR=223;RUN=1;SAF=223;SAP=487.249;SAR=0;SRF=490;SRP=1060.54;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:316:214,102:214:8098:102:3652:-228.514,0,-627.93 0/1:206:142,63:142:5363:63:2150:-129.609,0,-418.489 0/1:194:135,58:135:5168:58:1727:-95.7456,0,-402.012 dDocent_Contig_6093 33 . T A 143.022 . AB=0.416667;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=24;DPB=24;DPRA=2;EPP=13.8677;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=752;RO=19;RPL=0;RPP=13.8677;RPPR=44.2683;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:7,5:7:286:5:205:-15.2226,0,-22.5025 0/0:4:4,0:4:163:0:0:0,-1.20412,-15.0584 0/0:8:8,0:8:303:0:0:0,-2.40824,-27.6193 dDocent_Contig_6094 7 . A G 109.954 . AB=0.2;ABP=14.7363;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X2M3X;DP=21;DPB=21;DPRA=1.25;EPP=9.52472;EPPR=29.068;GTI=0;LEN=1;MEANALT=3;MQM=11;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=102;QR=456;RO=12;RPL=0;RPP=9.52472;RPPR=29.068;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:9:6,0,1,1:6:226:0,1,1:0,37,40:-1.59211,-3.39829,-22.0393,-2.75185,-21.3769,-21.0759,0,-18.7337,-18.0735,-18.4327 0|0:6:6,0,0,0:6:230:0,0,0:0,0,0:0,-1.80618,-21.0667,-1.80618,-21.0667,-21.0667,-1.80618,-21.0667,-21.0667,-21.0667 1|0:6:0,2,2,2:0:0:2,2,2:68,65,76:-11.6376,-6.36767,-5.76561,-10.3524,-5.1367,-9.75031,-5.35085,0,-4.09239,-4.74879 dDocent_Contig_6095 1 . N T 71.3832 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=26;MQMR=0;NS=1;NUMALT=1;ODDS=5.29832;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:105:-7.13615,-0.90309,0 dDocent_Contig_6096 53 . A G 993.135 . AB=0.4;ABP=10.8276;AC=2;AF=0.333333;AN=6;AO=36;CIGAR=1X;DP=135;DPB=135;DPRA=1;EPP=81.1833;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1423;QR=3914;RO=99;RPL=36;RPP=81.1833;RPPR=217.986;RPR=0;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:45:45,0:45:1782:0:0:0,-13.5463,-160.604 0/1:27:24,3:24:947:3:121:-3.15239,0,-77.405 0/1:63:30,33:30:1185:33:1302:-98.4774,0,-87.9586 dDocent_Contig_6097 43 . A G 1090.26 . AB=0.470588;ABP=3.64897;AC=3;AF=0.5;AN=6;AO=40;CIGAR=1X;DP=85;DPB=85;DPRA=0;EPP=89.8692;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.9;PAIREDR=0.911111;PAO=0;PQA=0;PQR=0;PRO=0;QA=1526;QR=1763;RO=45;RPL=0;RPP=89.8692;RPPR=100.727;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:18,16:18:720:16:628:-46.6191,0,-54.8926 0/1:21:11,10:11:414:10:350:-25.5005,0,-31.2834 0/1:30:16,14:16:629:14:548:-40.6229,0,-47.9127 dDocent_Contig_6098 22 . T C 447.018 . AB=0.272727;ABP=17.8158;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1M1D5M1X1M;DP=45;DPB=42.2222;DPRA=0;EPP=24.725;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=385;QR=768;RO=20;RPL=0;RPP=24.725;RPPR=46.4397;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:27:8,7,12:8:305:7,12:274,463:-35.606,-15.4845,-38.3925,0,-2.47922,-21.3993 1|0:6:1,2,3:1:40:2,3:80,104:-11.4122,-5.10204,-7.80835,-3.29487,0,-5.68686 0|0:12:11,1,0:11:423:1,0:31,0:0,-0.512906,-35.318,-3.31133,-35.6191,-38.1014 dDocent_Contig_6099 44 . A G 83.2715 . AB=0.217391;ABP=18.9659;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=45;DPB=45;DPRA=0.522727;EPP=13.8677;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=187;QR=1531;RO=40;RPL=0;RPP=13.8677;RPPR=89.8692;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:826:0:0:0,-6.62266,-74.6546 0/1:14:12,2:12:466:2:76:-2.99984,0,-38.0734 0/1:9:6,3:6:239:3:111:-7.64247,0,-19.1757 dDocent_Contig_6101 15 . G C 102.249 . AB=0.333333;ABP=5.9056;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=25;DPB=25;DPRA=1.84615;EPP=11.6962;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=809;RO=21;RPL=0;RPP=11.6962;RPPR=48.6112;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3,0:3:122:0:0:0,-0.90309,-11.3725 0/0:10:10,0:10:398:0:0:0,-3.0103,-36.1766 0/1:12:8,4:8:289:4:163:-11.4461,0,-22.733 dDocent_Contig_6102 127 . G A 86.0438 . AB=0.363636;ABP=4.78696;AC=1;AF=0.25;AN=4;AO=4;CIGAR=1X;DP=19;DPB=19;DPRA=1.375;EPP=11.6962;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=144;QR=530;RO=15;RPL=0;RPP=11.6962;RPPR=35.5824;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=35.5824;SRR=15;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9026 0/1:11:7,4:7:246:4:144:-10.0023,0,-19.1699 ./.:.:.:.:.:.:.:. dDocent_Contig_6103 50 . A C 49.0379 . AB=0.666667;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=17;DPB=17;DPRA=0.428571;EPP=7.35324;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=74;QR=577;RO=15;RPL=2;RPP=7.35324;RPPR=35.5824;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:316:0:0:0,-2.40824,-28.8056 0/1:3:1,2:1:38:2:74:-6.12093,0,-2.89418 0/0:6:6,0:6:223:0:0:0,-1.80618,-20.4212 dDocent_Contig_6104 12 . A T 433.855 . AB=0.516129;ABP=3.08035;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=31;DPB=31;DPRA=0;EPP=37.7539;EPPR=27.4756;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.6;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.933333;PAO=0;PQA=0;PQR=0;PRO=0;QA=614;QR=601;RO=15;RPL=0;RPP=37.7539;RPPR=35.5824;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=14;SRP=27.4756;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:2:1,1:1:35:1:40:-3.39362,0,-1.76487 0/1:11:6,5:6:242:5:188:-13.9724,0,-18.8456 0/1:18:8,10:8:324:10:386:-29.6769,0,-24.1109 dDocent_Contig_6105 7 . A G 821.174 . AB=0.154762;ABP=89.9726;AC=0;AF=0;AN=6;AO=13;CIGAR=1X3M1X6M1X7M;DP=84;DPB=84;DPRA=0;EPP=31.2394;EPPR=52.9542;GTI=0;LEN=1;MEANALT=4;MQM=54.4615;MQMR=60;NS=3;NUMALT=4;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=425;QR=886;RO=23;RPL=0;RPP=31.2394;RPPR=52.9542;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:39:12,6,5,16,0:12:456:6,5,16,0:187,186,625,0:-47.0022,-35.9657,-71.5567,-35.3919,-58.1435,-71.2905,0,-22.774,-22.1964,-32.6046,-50.6145,-73.3628,-72.7957,-37.421,-88.0171 0|0:18:4,1,3,7,2:4:157:1,3,7,2:38,115,271,57:-20.3778,-18.4639,-31.0833,-12.1378,-21.9429,-24.1574,0,-9.81149,-3.484,-10.8226,-17.1137,-26.9143,-20.5919,-8.46624,-29.4289 0|0:27:7,6,7,0,6:7:273:6,7,0,6:200,252,0,236:-18.4485,-4.38319,-25.0221,0,-6.28122,-20.342,-20.5557,-26.8283,-22.4493,-43.0028,-1.41694,-7.69723,-3.31497,-23.8698,-22.0636 dDocent_Contig_6106 42 . T A 447.06 . AB=0.322034;ABP=19.2411;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=1X;DP=79;DPB=79;DPRA=0;EPP=46.4397;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=742;QR=2226;RO=59;RPL=0;RPP=46.4397;RPPR=131.127;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:31,3:31:1141:3:115:-0.489706,0,-92.7452 0/0:20:19,1:19:731:1:37:0,-2.32277,-62.4233 0/1:25:9,16:9:354:16:590:-45.9103,0,-24.6967 dDocent_Contig_6107 88 . G T 81.1953 . AB=0.263158;ABP=12.2676;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=29;DPB=29;DPRA=0.95;EPP=13.8677;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.916667;PAO=0;PQA=0;PQR=0;PRO=0;QA=170;QR=833;RO=24;RPL=5;RPP=13.8677;RPPR=55.1256;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:9,4:9:314:4:139:-8.9393,0,-24.6845 0/0:10:10,0:10:345:0:0:0,-3.0103,-31.3838 0/1:6:5,1:5:174:1:31:-1.29327,0,-14.1958 dDocent_Contig_6108 11 . T G 108.973 . AB=0.571429;ABP=3.32051;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=2X;DP=22;DPB=22;DPRA=0.933333;EPP=11.6962;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=51.75;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=724;RO=18;RPL=0;RPP=11.6962;RPPR=42.0968;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:8:8,0:8:320:0:0:0,-2.40824,-29.1683 0|1:7:3,4:3:121:4:155:-12.1191,0,-9.17299 0|0:7:7,0:7:283:0:0:0,-2.10721,-25.843 dDocent_Contig_6109 14 . C A 216.804 . AB=0.272727;ABP=12.8806;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X1M;DP=57;DPB=57;DPRA=1.15789;EPP=16.0391;EPPR=98.5551;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.954545;PAO=0;PQA=0;PQR=0;PRO=0;QA=221;QR=1752;RO=44;RPL=0;RPP=16.0391;RPPR=98.5551;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:16:10,2,4,0:10:398:2,4,0:76,162,0:-10.3645,-7.15008,-39.3147,0,-26.5565,-31.5824,-13.3748,-39.9168,-32.7865,-46.1473 0|1:22:15,0,1,6:15:594:0,1,6:0,27,221:-13.6347,-18.1501,-67.0665,-16.0353,-64.9431,-64.642,0,-49.0058,-46.8849,-47.1996 0|0:19:19,0,0,0:19:760:0,0,0:0,0,0:0,-5.71957,-68.7217,-5.71957,-68.7217,-68.7217,-5.71957,-68.7217,-68.7217,-68.7217 dDocent_Contig_6110 29 . A T 759.875 . AB=0.105263;ABP=28.7251;AC=0;AF=0;AN=6;AO=2;CIGAR=12M2X;DP=71;DPB=82.5714;DPRA=0;EPP=7.35324;EPPR=74.6689;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1281;RO=33;RPL=0;RPP=7.35324;RPPR=74.6689;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:37:11,20,5,0,0:11:423:20,5,0,0:771,191,0,0:-59.9972,0,-28.7055,-47.6405,-19.0584,-80.8612,-63.3086,-34.7261,-82.3663,-98.0347,-63.3086,-34.7261,-82.3663,-98.0347,-98.0347 0|0:15:9,1,0,0,5:9:351:1,0,0,5:39,0,0,194:-12.3644,-11.8643,-40.4283,-15.0737,-40.7293,-43.9357,-15.0737,-40.7293,-43.9357,-43.9357,0,-25.6457,-28.8516,-28.8516,-27.3465 0|0:19:13,0,4,2,0:13:507:0,4,2,0:0,139,81,0:-7.34257,-11.256,-52.9444,0,-41.6596,-40.4555,-4.55768,-46.2627,-34.9785,-45.6606,-11.256,-52.9444,-41.6596,-46.2627,-52.9444 dDocent_Contig_6111 7 . A T 860.152 . AB=0.463768;ABP=3.79707;AC=3;AF=0.5;AN=6;AO=32;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=72.4974;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.875;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1216;QR=1389;RO=37;RPL=0;RPP=72.4974;RPPR=83.3548;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:15,17:15:559:17:644:-48.6611,0,-41.0143 0/1:26:14,12:14:523:12:455:-33.4718,0,-39.5837 0/1:11:8,3:8:307:3:117:-7.59905,0,-24.6803 dDocent_Contig_6113 9 . G C 115.214 . AB=0.179487;ABP=37.8095;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=81;DPB=81;DPRA=1.85714;EPP=18.2106;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=268;QR=2803;RO=74;RPL=0;RPP=18.2106;RPPR=163.699;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:30,0:30:1146:0:0:0,-9.0309,-103.441 0/0:12:12,0:12:449:0:0:0,-3.61236,-40.7569 0/1:39:32,7:32:1208:7:268:-12.7432,0,-97.2733 dDocent_Contig_6114 44 . T C 1609.52 . AB=0.168421;ABP=93.7321;AC=0;AF=0;AN=6;AO=16;CIGAR=1X1M4I7M;DP=137;DPB=175.222;DPRA=0;EPP=37.7539;EPPR=113.755;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=2.77556e-17;PAIRED=1;PAIREDR=0.980392;PAO=0;PQA=0;PQR=0;PRO=0;QA=613;QR=1983;RO=51;RPL=0;RPP=37.7539;RPPR=113.755;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:65:20,15,19,11:20:768:15,19,11:576,708,418:-51.9203,-10.6646,-69.1917,0,-15.7659,-57.3202,-23.6657,-39.4322,-28.7661,-83.3958 0|0:30:17,1,12,0:17:662:1,12,0:37,450,0:-31.7406,-33.8315,-87.9472,0,-51.4006,-50.8142,-36.8581,-88.2482,-54.4265,-91.2748 0|0:42:14,0,27,0:14:553:0,27,0:0,1037,0:-81.008,-85.2224,-130.732,0,-45.6212,-37.4933,-85.2224,-130.732,-45.6212,-130.732 dDocent_Contig_6115 27 . A G 152.922 . AB=0.275862;ABP=15.6647;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X1M1X;DP=43;DPB=43;DPRA=1.03571;EPP=20.3821;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=285;QR=1324;RO=34;RPL=0;RPP=20.3821;RPPR=76.8404;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:14:11,3:11:434:3:106:-5.67147,0,-35.2009 0|1:15:10,5:10:393:5:179:-11.9395,0,-31.2124 0|0:14:13,0:13:497:0:0:0,-3.91339,-44.6578 dDocent_Contig_6116 11 . A G 567.037 . 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C A 152.359 . AB=0.4;ABP=4.31318;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=43;DPB=43;DPRA=1.07143;EPP=16.0391;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=229;QR=1465;RO=37;RPL=0;RPP=16.0391;RPPR=83.3548;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:402:0:0:0,-3.0103,-36.5401 0/1:15:9,6:9:363:6:229:-16.4578,0,-28.5188 0/0:18:18,0:18:700:0:0:0,-5.41854,-63.3219 dDocent_Contig_6118 12 . G A 49.1413 . AB=0.142857;ABP=34.0313;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=63;DPB=63;DPRA=1.6;EPP=11.6962;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=54.75;MQMR=44.8644;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.983051;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=2301;RO=59;RPL=0;RPP=11.6962;RPPR=131.127;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:706:0:0:0,-5.41854,-53.4656 0/1:28:24,4:24:920:4:158:-6.13598,0,-68.5112 0/0:17:17,0:17:675:0:0:0,-5.11751,-55.137 dDocent_Contig_6119 15 . T C 129.892 . AB=0.222222;ABP=21.1059;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=73;DPB=73;DPRA=1.17391;EPP=16.0391;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=2678;RO=67;RPL=0;RPP=16.0391;RPPR=148.499;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:483:0:0:0,-3.61236,-43.82 0/0:34:34,0:34:1344:0:0:0,-10.235,-121.218 0/1:27:21,6:21:851:6:244:-14.211,0,-68.7712 dDocent_Contig_6121 91 . C T 680.413 . AB=0.079646;ABP=176.44;AC=0;AF=0;AN=6;AO=9;CIGAR=1X3M1X;DP=113;DPB=113;DPRA=0;EPP=22.5536;EPPR=155.013;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.985714;PAO=0;PQA=0;PQR=0;PRO=0;QA=303;QR=2412;RO=70;RPL=9;RPP=22.5536;RPPR=155.013;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:66:50,4,11:50:1721:4,11:133,376:-15.4776,-19.768,-158.351,0,-129.039,-136.489 0|0:29:15,2,12:15:518:2,12:70,416:-29.2954,-28.1149,-69.5996,0,-36.3874,-38.471 0|0:18:5,3,10:5:173:3,10:100,350:-26.985,-20.3998,-33.5546,0,-5.97762,-11.0568 dDocent_Contig_6122 64 . G A 388.437 . AB=0.355556;ABP=11.1654;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X;DP=76;DPB=76;DPRA=2.90323;EPP=37.7539;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.833333;PAO=0;PQA=0;PQR=0;PRO=0;QA=592;QR=2171;RO=60;RPL=8;RPP=3.0103;RPPR=5.32654;RPR=8;RUN=1;SAF=8;SAP=3.0103;SAR=8;SRF=34;SRP=5.32654;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:698:0:0:0,-6.0206,-63.1305 0/1:45:29,16:29:1075:16:592:-40.0655,0,-83.5021 0/0:11:11,0:11:398:0:0:0,-3.31133,-36.1608 dDocent_Contig_6123 33 . G A 3516.02 . AB=0.0909091;ABP=34.9902;AC=0;AF=0;AN=6;AO=2;CIGAR=2X1M;DP=162;DPB=162;DPRA=0;EPP=7.35324;EPPR=48.6112;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=811;RO=21;RPL=0;RPP=7.35324;RPPR=48.6112;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:72:0,14,0,41,17:0:0:14,0,41,17:556,0,1605,662:-186.355,-140.583,-136.368,-186.355,-140.583,-186.355,-54.3955,-8.62109,-54.3955,-42.0533,-131.956,-86.1835,-131.956,0,-126.838 0|0:22:7,0,2,13,0:7:272:0,2,13,0:0,77,522,0:-40.9199,-43.0271,-65.3751,-36.7072,-59.054,-58.452,0,-22.3541,-16.0328,-18.4407,-43.0271,-65.3751,-59.054,-22.3541,-65.3751 0|0:68:14,15,0,39,0:14:539:15,0,39,0:581,0,1563,0:-128.043,-84.5348,-124.266,-132.258,-128.782,-176.506,-3.47803,0,-47.7279,-35.9877,-132.258,-128.782,-176.506,-47.7279,-176.506 dDocent_Contig_6124 22 . C G 416.294 . AB=0.347826;ABP=12.2627;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=47;DPB=47;DPRA=23;EPP=37.7539;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.0625;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=634;QR=1253;RO=31;RPL=0;RPP=37.7539;RPPR=70.3259;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/1:26:16,10:16:645:10:390:-27.6271,0,-50.5572 0/1:20:14,6:14:567:6:244:-16.3182,0,-45.3493 dDocent_Contig_6125 16 . G T 228.789 . AB=0.277778;ABP=18.4519;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1M1I1X;DP=55;DPB=60;DPRA=0.947368;EPP=24.725;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=392;QR=1771;RO=45;RPL=0;RPP=24.725;RPPR=100.727;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:21:14,7:14:560:7:271:-18.4329,0,-44.4218 0|0:19:19,0:19:742:0:0:0,-5.71957,-67.1054 0|1:15:12,3:12:469:3:121:-6.76475,0,-38.0426 dDocent_Contig_6126 21 . C T 35.8639 . AB=0.103448;ABP=42.621;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X3M1X;DP=62;DPB=62;DPRA=4.83333;EPP=9.52472;EPPR=87.6977;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=113;QR=1509;RO=39;RPL=0;RPP=9.52472;RPPR=87.6977;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:27:19,2,2,0,3:19:739:2,2,0,3:74,79,0,113:-0.378081,0,-60.2872,-3.43074,-58.2213,-63.6705,-6.09765,-60.8892,-64.2726,-66.9414,-3.82818,-58.5858,-61.9711,-64.6358,-63.7327 0|1:29:15,6,0,3,3:15:584:6,0,3,3:225,0,113,104:-4.7938,-4.70006,-50.9813,-9.30925,-52.7875,-57.4063,0,-43.5228,-48.1375,-47.2344,-5.63476,-49.1322,-53.7398,-44.4716,-52.8367 0|0:6:5,0,0,0,0:5:186:0,0,0,0:0,0,0,0:0,-1.50515,-16.7207,-1.50515,-16.7207,-16.7207,-1.50515,-16.7207,-16.7207,-16.7207,-1.50515,-16.7207,-16.7207,-16.7207,-16.7207 dDocent_Contig_6127 13 . A G 158.465 . AB=0.375;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=65;DPB=65;DPRA=0.653061;EPP=16.0391;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.1186;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.305085;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=2383;RO=59;RPL=0;RPP=16.0391;RPPR=131.127;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:34,0:34:1369:0:0:0,-10.235,-122.245 0/1:16:10,6:10:402:6:239:-17.0683,0,-31.7007 0/0:15:15,0:15:612:0:0:0,-4.51545,-55.4171 dDocent_Contig_6128 11 . T G 154.025 . AB=0.210526;ABP=30.668;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=39;DPB=39;DPRA=19;EPP=20.3821;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=315;QR=1237;RO=31;RPL=0;RPP=20.3821;RPPR=70.3259;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 0/1:7:6,1:6:237:1:39:-1.78935,0,-19.5952 0/1:31:24,7:24:961:7:276:-15.8742,0,-77.4507 dDocent_Contig_6129 9 . G A 70.2486 . AB=0.428571;ABP=3.32051;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X2M1X;DP=57;DPB=57;DPRA=0.28;EPP=9.52472;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=111;QR=2057;RO=53;RPL=0;RPP=9.52472;RPPR=118.098;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:20:20,0:20:774:0:0:0,-6.0206,-69.9836 0|0:30:29,0:29:1126:0:0:0,-8.72987,-101.266 0|1:7:4,3:4:157:3:111:-8.24671,0,-12.4018 dDocent_Contig_6130 63 . G C 89.5437 . AB=0.25;ABP=11.6962;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=28;DPB=28;DPRA=2.66667;EPP=11.6962;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=917;RO=24;RPL=4;RPP=11.6962;RPPR=55.1256;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:12,4:12:458:4:159:-9.87496,0,-36.7405 0/0:7:7,0:7:266:0:0:0,-2.10721,-24.3017 0/0:5:5,0:5:193:0:0:0,-1.50515,-17.7415 dDocent_Contig_6132 24 . G T 35.9861 . AB=0.3125;ABP=7.89611;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X2M2X;DP=40;DPB=40;DPRA=1.33333;EPP=13.8677;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=21;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=1271;RO=33;RPL=0;RPP=13.8677;RPPR=74.6689;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:23:21,0:21:803:0:0:0,-6.32163,-72.4571 0|0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 0|1:16:11,5:11:428:5:199:-4.81745,0,-34.0576 dDocent_Contig_6134 14 . A C 111.638 . AB=0.166667;ABP=14.5915;AC=2;AF=0.333334;AN=6;AO=3;CIGAR=1X4M;DP=30;DPB=30;DPRA=0;EPP=9.52472;EPPR=50.7827;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.954545;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=876;RO=22;RPL=0;RPP=9.52472;RPPR=50.7827;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:12:9,1,2:9:360:1,2:40,78:-3.69571,-3.10659,-32.469,0,-26.3602,-29.0533 0|0:13:11,1,1:11:437:1,1:40,40:0,-0.0162487,-35.6889,-0.0162487,-32.6946,-35.6889 0|1:5:2,3,0:2:79:3,0:121,0:-9.77505,0,-5.99209,-10.3771,-6.89518,-16.8744 dDocent_Contig_6135 108 . T A 105.961 . AB=0.173913;ABP=66.7383;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X2M1X;DP=69;DPB=69;DPRA=0;EPP=29.068;EPPR=109.412;GTI=0;LEN=1;MEANALT=3;MQM=27.8333;MQMR=50.3469;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.816327;PAO=0;PQA=0;PQR=0;PRO=0;QA=386;QR=1602;RO=49;RPL=0;RPP=29.068;RPPR=109.412;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=109.412;SRR=49;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:33:25,7,0:25:794:7,0:232,0:-7.33795,0,-55.675,-14.8637,-57.7822,-72.5727 0|1:11:6,3,0:6:195:3,0:96,0:-4.26274,0,-12.8575,-6.06892,-13.7606,-19.8369 0|0:25:18,2,3:18:613:2,3:58,100:-2.70479,-4.20384,-41.1467,0,-33.6461,-36.678 dDocent_Contig_6136 19 . C T 135.922 . AB=0.315789;ABP=8.61041;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X2M1X;DP=32;DPB=32;DPRA=0.730769;EPP=16.0391;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=59.1667;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=1007;RO=26;RPL=0;RPP=16.0391;RPPR=59.4686;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:11:8,3:8:302:3:122:-8.06116,0,-24.224 0|1:8:5,3:5:195:3:110:-7.84982,0,-15.5153 0|0:13:13,0:13:510:0:0:0,-3.91339,-46.2466 dDocent_Contig_6137 7 . A T 438.199 . AB=0.241379;ABP=53.5532;AC=2;AF=0.333333;AN=6;AO=26;CIGAR=1X3M1X;DP=148;DPB=148;DPRA=0;EPP=59.4686;EPPR=265.758;GTI=0;LEN=1;MEANALT=1.33333;MQM=54.5;MQMR=49.281;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.991736;PAO=0;PQA=0;PQR=0;PRO=0;QA=988;QR=4581;RO=121;RPL=0;RPP=59.4686;RPPR=265.758;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=121;SRP=265.758;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:61:55,5:55:2081:5:190:0,-1.01006,-150.628 0|1:26:21,5:21:794:5:193:-9.867,0,-60.7684 0|1:61:45,16:45:1706:16:605:-36.2711,0,-113.704 dDocent_Contig_6140 13 . A T 80.5901 . AB=0.210526;ABP=16.8392;AC=1;AF=0.25;AN=4;AO=4;CIGAR=1X;DP=31;DPB=31;DPRA=1.58333;EPP=11.6962;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=1052;RO=27;RPL=0;RPP=11.6962;RPPR=61.6401;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:15,4:15:595:4:161:-9.15591,0,-48.1693 0/0:12:12,0:12:457:0:0:0,-3.61236,-41.4722 ./.:.:.:.:.:.:.:. dDocent_Contig_6141 98 . N G 226.842 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=0;RO=0;RPL=8;RPP=20.3821;RPPR=0;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:7:0,7:0:0:7:212:-19.379,-2.10721,0 1/1:1:0,1:0:0:1:30:-2.99957,-0.30103,0 dDocent_Contig_6142 24 . G A 684.136 . AB=0.22963;ABP=88.7272;AC=3;AF=0.5;AN=6;AO=31;CIGAR=1X;DP=135;DPB=135;DPRA=0;EPP=70.3259;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1241;QR=4146;RO=104;RPL=0;RPP=70.3259;RPPR=228.843;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:23,12:23:913:12:475:-32.5647,0,-71.9417 0/1:51:46,5:46:1840:5:205:-3.48248,0,-150.458 0/1:49:35,14:35:1393:14:561:-36.0819,0,-110.867 dDocent_Contig_6143 21 . A G 31.7453 . AB=0.2;ABP=10.8276;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=19;DPB=19;DPRA=2.22222;EPP=7.35324;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=673;RO=17;RPL=0;RPP=7.35324;RPPR=39.9253;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/0:8:8,0:8:314:0:0:0,-2.40824,-28.6253 0/1:10:8,2:8:318:2:78:-4.39317,0,-25.976 dDocent_Contig_6144 39 . G C 327.631 . AB=0.333333;ABP=12.42;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=73;DPB=73;DPRA=0;EPP=35.5824;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=587;QR=2241;RO=58;RPL=0;RPP=35.5824;RPPR=128.956;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:20,6:20:757:6:241:-14.2397,0,-60.6102 0/1:13:6,7:6:229:7:271:-20.8422,0,-17.0616 0/0:34:32,2:32:1255:2:75:0,-3.11543,-106.099 dDocent_Contig_6145 43 . A G 534.812 . AB=0.225806;ABP=23.254;AC=0;AF=0;AN=6;AO=7;CIGAR=1X2M9I2M;DP=49;DPB=99.4;DPRA=0;EPP=18.2106;EPPR=48.6112;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.857143;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=827;RO=21;RPL=0;RPP=18.2106;RPPR=48.6112;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:25:7,6,12:7:270:6,12:234,462:-35.823,-18.6936,-39.0579,0,-2.93101,-18.5556 0|0:6:3,1,2:3:118:1,2:39,78:-5.5085,-3.20571,-12.6135,0,-6.50426,-9.10725 0|0:18:11,0,7:11:439:0,7:0,233:-15.8662,-19.1775,-55.3735,0,-36.5543,-34.4471 dDocent_Contig_6146 12 . T C 123.279 . AB=0.189189;ABP=34.0565;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=42;DPB=42;DPRA=3.7;EPP=18.2106;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=1364;RO=35;RPL=0;RPP=18.2106;RPPR=79.0118;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:20,3:20:770:3:117:-3.9856,0,-62.687 0/0:5:5,0:5:196:0:0:0,-1.50515,-18.0143 0/1:14:10,4:10:398:4:161:-10.6605,0,-31.9615 dDocent_Contig_6147 19 . G T 39.4491 . AB=0.142857;ABP=26.2761;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=52;DPB=52;DPRA=1.35484;EPP=9.52472;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=1894;RO=49;RPL=0;RPP=9.52472;RPPR=109.412;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:18,3:18:686:3:120:-4.86568,0,-55.7463 0/0:16:16,0:16:622:0:0:0,-4.81648,-56.3163 0/0:15:15,0:15:586:0:0:0,-4.51545,-53.0788 dDocent_Contig_6148 16 . C T 148.599 . AB=0.0625;ABP=189.214;AC=0;AF=0;AN=6;AO=7;CIGAR=2X;DP=227;DPB=227;DPRA=2.07407;EPP=18.2106;EPPR=424.276;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.989691;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=7692;RO=194;RPL=0;RPP=18.2106;RPPR=424.276;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=194;SRP=424.276;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:112:94,7,10:94:3717:7,10:278,390:-3.75702,-9.16093,-312.947,0,-283.003,-302.88 0|0:54:50,0,4:50:1964:0,4:0,153:0,-15.0515,-176.591,-2.11533,-164.038,-162.833 0|0:61:50,0,9:50:2011:0,9:0,347:-13.4209,-28.4724,-194.21,0,-165.724,-163.015 dDocent_Contig_6149 52 . G A 234.935 . AB=0.294118;ABP=15.5282;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=34;DPB=34;DPRA=0;EPP=24.725;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.958333;PAO=0;PQA=0;PQR=0;PRO=0;QA=403;QR=938;RO=24;RPL=10;RPP=24.725;RPPR=55.1256;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:7,5:7:283:5:200:-14.7672,0,-22.231 0/1:5:4,1:4:155:1:40:-2.49053,0,-12.8192 0/1:17:13,4:13:500:4:163:-9.94092,0,-40.222 dDocent_Contig_6151 60 . G T 272.968 . AB=0.5625;ABP=3.55317;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=45;DPB=45;DPRA=1.10345;EPP=22.5536;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=363;QR=1398;RO=36;RPL=9;RPP=22.5536;RPPR=81.1833;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:7,9:7:276:9:363:-28.2176,0,-20.3929 0/0:22:22,0:22:839:0:0:0,-6.62266,-75.8125 0/0:7:7,0:7:283:0:0:0,-2.10721,-25.843 dDocent_Contig_6152 9 . G C 42.985 . AB=0.4;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=29;DPB=29;DPRA=0.416667;EPP=7.35324;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.962963;PAO=0;PQA=0;PQR=0;PRO=0;QA=74;QR=1025;RO=27;RPL=0;RPP=7.35324;RPPR=61.6401;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:264:0:0:0,-2.10721,-24.1188 0/0:17:17,0:17:646:0:0:0,-5.11751,-58.4755 0/1:5:3,2:3:115:2:74:-5.52028,0,-9.21974 dDocent_Contig_6153 12 . T C 282.03 . AB=0.122549;ABP=255.455;AC=2;AF=0.333333;AN=6;AO=29;CIGAR=1X1M;DP=258;DPB=258;DPRA=0;EPP=49.8093;EPPR=435.78;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.724138;PAIREDR=0.906977;PAO=0;PQA=0;PQR=0;PRO=0;QA=1146;QR=8485;RO=215;RPL=0;RPP=65.983;RPPR=469.877;RPR=29;RUN=1;SAF=27;SAP=49.8093;SAR=2;SRF=211;SRP=435.78;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:121:102,0,15:102:4030:0,15:0,594:-18.1856,-48.8907,-380.498,0,-331.61,-327.094 0|1:83:67,4,10:67:2617:4,10:160,395:-12.3354,-19.3222,-233.248,0,-201.952,-212.122 0|0:54:46,3,4:46:1838:3,4:116,157:0,-4.3225,-154.812,-0.934454,-142.804,-151.127 dDocent_Contig_6154 162 . C T 103.251 . AB=0.444444;ABP=3.25157;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=27;DPB=27;DPRA=1;EPP=11.6962;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=151;QR=882;RO=23;RPL=4;RPP=11.6962;RPPR=52.9542;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:5,4:5:181:4:151:-11.2459,0,-13.9326 0/0:10:10,0:10:388:0:0:0,-3.0103,-35.2731 0/0:8:8,0:8:313:0:0:0,-2.40824,-28.5338 dDocent_Contig_6155 54 . C T 86.1054 . AB=0.172414;ABP=30.0414;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=41;DPB=41;DPRA=4.83333;EPP=13.8677;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=1446;RO=36;RPL=5;RPP=13.8677;RPPR=81.1833;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:238:0:0:0,-1.80618,-21.7942 0/0:6:6,0:6:239:0:0:0,-1.80618,-21.8844 0/1:29:24,5:24:969:5:202:-9.83221,0,-78.779 dDocent_Contig_6156 11 . T C 895.315 . 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T G 289.053 . AB=0.282609;ABP=21.8927;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=31.2394;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=504;QR=1328;RO=33;RPL=0;RPP=31.2394;RPPR=74.6689;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:14,2:14:567:2:78:-2.58682,0,-46.5564 0/1:14:6,8:6:242:8:317:-24.6794,0,-17.9425 0/1:16:13,3:13:519:3:109:-5.34651,0,-42.2403 dDocent_Contig_6158 21 . C T 134.725 . AB=0.233333;ABP=21.5402;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X2M3X;DP=30;DPB=30;DPRA=0;EPP=18.2106;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=57.4286;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=917;RO=23;RPL=0;RPP=18.2106;RPPR=52.9542;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:9:7,2:7:278:2:80:-4.82766,0,-22.6818 0|1:10:8,2:8:320:2:78:-4.39248,0,-26.158 0|1:11:8,3:8:319:3:121:-7.96887,0,-25.7656 dDocent_Contig_6159 8 . T C 1290.86 . AB=0.440476;ABP=5.59539;AC=4;AF=0.666667;AN=6;AO=37;CIGAR=1M1X;DP=84;DPB=84;DPRA=0;EPP=83.3548;EPPR=44.2683;GTI=0;LEN=1;MEANALT=2.66667;MQM=56.9189;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.837838;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1410;QR=719;RO=19;RPL=0;RPP=83.3548;RPPR=44.2683;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:42:12,0,9,19:12:454:0,9,19:0,340,717:-54.154,-57.7663,-94.9893,-33.3916,-70.612,-67.9027,0,-37.2372,-12.8681,-31.5177 1|1:13:0,0,8,5:0:0:0,8,5:0,300,195:-40.0408,-40.0408,-40.0408,-15.4642,-15.4642,-13.0559,-24.9478,-24.9478,0,-23.4426 0|1:29:7,4,5,13:7:265:4,5,13:156,192,498:-38.6083,-28.0773,-48.6011,-27.056,-36.1441,-47.2751,0,-9.09292,-8.078,-17.8208 dDocent_Contig_6160 29 . C T 75.3367 . 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AB=0.521277;ABP=3.37991;AC=3;AF=0.5;AN=6;AO=49;CIGAR=1X;DP=94;DPB=94;DPRA=0;EPP=109.412;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=14.449;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1869;QR=1729;RO=45;RPL=0;RPP=109.412;RPPR=100.727;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:7,15:7:271:15:557:-11.0249,0,-18.1337 0/1:31:11,20:11:427:20:771:-16.7769,0,-29.4532 0/1:41:27,14:27:1031:14:541:-7.94751,0,-80.7548 dDocent_Contig_6164 8 . T G 1063.56 . AB=0.142857;ABP=57.2971;AC=0;AF=0;AN=6;AO=7;CIGAR=2M2X1M1X4M1X1M1X1M1X2M;DP=113;DPB=112.294;DPRA=0;EPP=18.2106;EPPR=48.6112;GTI=0;LEN=1;MEANALT=10;MQM=53;MQMR=60;NS=3;NUMALT=8;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=827;RO=21;RPL=0;RPP=18.2106;RPPR=48.6112;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:33:12,5,0,0,0,4,0,0,7:12:472:5,0,0,0,4,0,0,7:189,0,0,0,108,0,0,268:-18.266,-6.39456,-43.739,-21.8784,-45.2442,-60.7213,-21.8784,-45.2442,-60.7213,-60.7213,-21.8784,-45.2442,-60.7213,-60.7213,-60.7213,-14.2437,-37.6047,-53.0788,-53.0788,-53.0788,-51.8747,-21.8784,-45.2442,-60.7213,-60.7213,-60.7213,-53.0788,-60.7213,-21.8784,-45.2442,-60.7213,-60.7213,-60.7213,-53.0788,-60.7213,-60.7213,0,-23.3757,-38.8546,-38.8546,-38.8546,-31.2165,-38.8546,-38.8546,-36.7474 0|0:49:0,10,0,7,3,4,4,7,11:0:0:10,0,7,3,4,4,7,11:384,0,241,101,150,151,274,444:-68.0426,-36.5468,-33.5365,-68.0426,-36.5468,-68.0426,-48.5092,-17.0142,-48.5092,-46.4019,-60.1822,-28.687,-60.1822,-40.6497,-59.2792,-56.6076,-25.112,-56.6076,-37.075,-48.7476,-55.4034,-56.0096,-24.5135,-56.0096,-36.4767,-48.1495,-44.5747,-54.8054,-45.668,-14.1706,-45.668,-26.1349,-37.8079,-34.233,-33.6347,-43.5607,-31.5001,0,-31.5001,-11.9664,-23.64,-20.0646,-19.4662,-9.12249,-28.1888 0|0:31:9,8,2,0,0,5,0,0,4:9:355:8,2,0,0,5,0,0,4:321,40,0,0,168,0,0,164:-23.7638,0,-26.8337,-24.0304,-26.7984,-52.648,-26.4731,-29.2419,-53.25,-55.6971,-26.4731,-29.2419,-53.25,-55.6971,-55.6971,-14.2234,-16.9915,-41.0028,-43.4463,-43.4463,-41.9412,-26.4731,-29.2419,-53.25,-55.6971,-55.6971,-43.4463,-55.6971,-26.4731,-29.2419,-53.25,-55.6971,-55.6971,-43.4463,-55.6971,-55.6971,-13.028,-15.7975,-39.8133,-42.2588,-42.2588,-30.0083,-42.2588,-42.2588,-41.0547 dDocent_Contig_6165 1 . N A 57.0606 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=35;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=64;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:64:-5.70173,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_6166 16 . G C 3125.38 . AB=0.405904;ABP=23.8516;AC=3;AF=0.5;AN=6;AO=110;CIGAR=1X;DP=271;DPB=271;DPRA=0;EPP=241.872;EPPR=343.931;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.854545;PAIREDR=0.987261;PAO=0;PQA=0;PQR=0;PRO=0;QA=4412;QR=6268;RO=157;RPL=0;RPP=241.872;RPPR=343.931;RPR=110;RUN=1;SAF=110;SAP=241.872;SAR=0;SRF=157;SRP=343.931;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:120:74,44:74:2959:44:1738:-120.732,0,-230.494 0/1:95:62,32:62:2463:32:1292:-87.8492,0,-193.122 0/1:56:21,34:21:846:34:1382:-107.674,0,-59.4936 dDocent_Contig_6167 171 . A G 281.782 . AB=0.409091;ABP=4.58955;AC=4;AF=0.666667;AN=6;AO=11;CIGAR=1X;DP=24;DPB=24;DPRA=0;EPP=26.8965;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=401;QR=408;RO=13;RPL=11;RPP=26.8965;RPPR=31.2394;RPR=0;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=31.2394;SRR=13;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:6,6:6:175:6:242:-18.5452,0,-12.4233 0/1:10:7,3:7:233:3:80:-4.45254,0,-18.2826 1/1:2:0,2:0:0:2:79:-7.49763,-0.60206,0 dDocent_Contig_6168 11 . C A 953.326 . AB=0.571429;ABP=5.49198;AC=3;AF=0.5;AN=6;AO=32;CIGAR=1X;DP=56;DPB=56;DPRA=0;EPP=72.4974;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1276;QR=956;RO=24;RPL=0;RPP=72.4974;RPPR=55.1256;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:11,9:11:446:9:361:-26.833,0,-34.4756 0/1:13:2,11:2:82:11:431:-35.2292,0,-3.86629 0/1:23:11,12:11:428:12:484:-36.9866,0,-31.9418 dDocent_Contig_6169 25 . G A 283.608 . AB=0.272727;ABP=22.751;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=69;DPB=69;DPRA=0.88;EPP=29.068;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=478;QR=2232;RO=57;RPL=0;RPP=29.068;RPPR=126.784;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:13,10:13:503:10:397:-29.1649,0,-38.6898 0/1:21:19,2:19:725:2:81:-1.3641,0,-59.245 0/0:25:25,0:25:1004:0:0:0,-7.52575,-90.657 dDocent_Contig_6170 129 . C T 489.227 . AB=0.68;ABP=10.0459;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=38;DPB=38;DPRA=0.961538;EPP=39.9253;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=645;QR=795;RO=21;RPL=0;RPP=39.9253;RPPR=48.6112;RPR=17;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:3,5:3:115:5:193:-15.3331,0,-8.31665 0/1:17:5,12:5:181:12:452:-35.9084,0,-11.5223 0/0:13:13,0:13:499:0:0:0,-3.91339,-45.2578 dDocent_Contig_6171 8 . T C 161.558 . AB=0.117647;ABP=24.5973;AC=0;AF=0;AN=6;AO=3;CIGAR=1X2M1X3M2X2M;DP=68;DPB=68;DPRA=0.807692;EPP=9.52472;EPPR=126.784;GTI=0;LEN=1;MEANALT=1.5;MQM=17;MQMR=59.7895;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.982456;PAO=0;PQA=0;PQR=0;PRO=0;QA=51;QR=2209;RO=57;RPL=0;RPP=9.52472;RPPR=126.784;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:25:24,1,0:24:928:1,0:15,0:0,-6.31986,-82.5937,-7.22472,-82.8948,-83.6684 0|0:26:24,0,0:24:942:0,0:0,0:0,-7.22472,-84.7068,-7.22472,-84.7068,-84.7068 0|0:17:9,2,6:9:339:2,6:36,242:-17.3776,-18.0459,-45.2033,0,-25.8969,-26.1535 dDocent_Contig_6173 1 . N G 582.851 . AB=0.222222;ABP=9.04217;AC=6;AF=1;AN=6;AO=2;CIGAR=1X3M1X4M;DP=21;DPB=22.8889;DPRA=1.5;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=0;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0;PAO=1.5;PQA=54.5;PQR=54.5;PRO=1.5;QA=67;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:8:0,8,0:0:0:8,0:260,0:-23.2979,-2.40824,0,-23.2979,-2.40824,-23.2979 1|1:9:0,7,2:0:0:7,2:226,67:-23.5917,-5.44883,-3.34162,-18.1611,0,-17.559 1|1:4:0,4,0:0:0:4,0:137,0:-12.3123,-1.20412,0,-12.3123,-1.20412,-12.3123 dDocent_Contig_6174 24 . C A 41.4967 . AB=0.222222;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=27;DPB=27;DPRA=1;EPP=7.35324;EPPR=48.9587;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.96;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=991;RO=25;RPL=0;RPP=7.35324;RPPR=57.2971;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=24;SRP=48.9587;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:266:2:82:-5.07041,0,-21.589 0/0:7:7,0:7:281:0:0:0,-2.10721,-25.6623 0/0:11:11,0:11:444:0:0:0,-3.31133,-40.3153 dDocent_Contig_6175 39 . C G 548.063 . AB=0.555556;ABP=3.9754;AC=1;AF=0.166667;AN=6;AO=20;CIGAR=1X;DP=82;DPB=82;DPRA=1.56522;EPP=46.4397;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=736;QR=2312;RO=62;RPL=0;RPP=46.4397;RPPR=137.642;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:16,20:16:603:20:736:-55.7271,0,-43.7687 0/0:18:18,0:18:666:0:0:0,-5.41854,-60.2673 0/0:28:28,0:28:1043:0:0:0,-8.42884,-94.1706 dDocent_Contig_6176 8 . T C 284.961 . AB=0.426829;ABP=10.6369;AC=2;AF=0.333333;AN=6;AO=73;CIGAR=1X;DP=193;DPB=193;DPRA=0;EPP=161.528;EPPR=263.587;GTI=0;LEN=1;MEANALT=1;MQM=12.8356;MQMR=49.5417;NS=3;NUMALT=1;ODDS=0;PAIRED=0.876712;PAIREDR=0.583333;PAO=0;PQA=0;PQR=0;PRO=0;QA=2817;QR=4600;RO=120;RPL=0;RPP=161.528;RPPR=263.587;RPR=73;RUN=1;SAF=73;SAP=161.528;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:22,17:22:844:17:636:-10.9435,0,-59.4964 0/0:29:26,3:26:982:3:117:0,-5.37214,-64.4753 0/1:125:72,53:72:2774:53:2064:-19.8713,0,-198.756 dDocent_Contig_6178 1 . N C 2143.68 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=114;CIGAR=1X;DP=114;DPB=114;DPRA=0;EPP=250.558;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=21.8246;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=3902;QR=0;RO=0;RPL=0;RPP=250.558;RPPR=0;RPR=114;RUN=1;SAF=0;SAP=250.558;SAR=114;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:28:0,28:0:0:28:961:-56.7415,-8.42884,0 1/1:12:0,12:0:0:12:409:-19.8736,-3.61236,0 1/1:74:0,74:0:0:74:2532:-137.276,-22.2762,0 dDocent_Contig_6182 10 . G T 160.303 . AB=0.176471;ABP=33.9218;AC=4;AF=0.666667;AN=6;AO=8;CIGAR=1M4I3M2X2M2I3M1I1M1X4M1I2M;DP=42;DPB=45.3158;DPRA=0;EPP=20.3821;EPPR=48.6112;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=809;RO=21;RPL=0;RPP=20.3821;RPPR=48.6112;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:21:11,5:11:423:5:176:-11.0127,0,-33.2405 1|1:8:0,2:0:0:2:66:-5.92595,-0.60206,0 0|1:13:10,1:10:386:1:40:-0.286433,0,-31.3924 dDocent_Contig_6183 24 . A G 71.5105 . AB=0.2;ABP=26.4622;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X3M1I1M2X2M1X3M1X;DP=34;DPB=34.4286;DPRA=3.75;EPP=16.0391;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=34;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=235;QR=1091;RO=28;RPL=0;RPP=16.0391;RPPR=63.8115;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:14:10,4:10:389:4:156:-7.91644,0,-31.1522 0|0:4:4,0:4:159:0:0:0,-1.20412,-14.6923 0|1:16:14,2:14:543:2:79:-1.43777,0,-44.3958 dDocent_Contig_6184 118 . A C 123.74 . AB=0.285714;ABP=5.80219;AC=2;AF=0.333334;AN=6;AO=2;CIGAR=1X2M;DP=39;DPB=42.3333;DPRA=0.538462;EPP=7.35324;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=1.73472e-18;PAIRED=0;PAIREDR=1;PAO=2.5;PQA=80.5;PQR=80.5;PRO=2.5;QA=82;QR=1029;RO=32;RPL=0;RPP=7.35324;RPPR=72.4974;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=72.4974;SRR=32;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:13:12,0,0:12:388:0,0:0,0:0,-3.61236,-35.1539,-3.61236,-35.1539,-35.1539 0|1:19:15,4,0:15:480:4,0:161,0:-9.13875,0,-37.7894,-13.6542,-38.9935,-52.2633 0|1:7:5,0,2:5:161:0,2:0,82:-5.55396,-7.05911,-19.8928,0,-13.1131,-12.5111 dDocent_Contig_6185 98 . N T 4867.91 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=157;CIGAR=1X;DP=157;DPB=157;DPRA=0;EPP=343.931;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=59.9427;MQMR=0;NS=1;NUMALT=1;ODDS=112.043;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=5407;QR=0;RO=0;RPL=157;RPP=343.931;RPPR=0;RPR=0;RUN=1;SAF=157;SAP=343.931;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:157:0,157:0:0:157:5407:-486.791,-47.2617,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_6186 8 . T A 4780.55 . AB=0.525547;ABP=4.56362;AC=4;AF=0.666667;AN=6;AO=144;CIGAR=1X3M;DP=274;DPB=298;DPRA=0;EPP=315.702;EPPR=74.6689;GTI=0;LEN=1;MEANALT=5.33333;MQM=59.0625;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0.875;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5491;QR=1284;RO=33;RPL=0;RPP=315.702;RPPR=74.6689;RPR=144;RUN=1;SAF=144;SAP=315.702;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:85:9,2,10,10,52:9:350:2,10,10,52:75,397,387,1978:-163.438,-160.004,-188.166,-133.464,-156.085,-159.218,-134.598,-157.22,-130.68,-160.352,-3.92063,-26.5418,0,-1.13785,-17.0307 0|1:67:8,4,11,7,37:8:309:4,11,7,37:154,439,259,1403:-123.226,-112.989,-137.164,-89.4748,-102.209,-111.543,-105.037,-117.77,-94.2564,-128.308,-10.7855,-23.5189,0,-15.5711,-25.0256 1|1:122:16,8,9,25,55:16:625:8,9,25,55:305,361,959,2110:-195.097,-174.893,-223.867,-170.167,-196.529,-218.841,-121.744,-148.106,-143.381,-165.601,-26.7845,-53.1474,-48.4211,0,-61.6114 dDocent_Contig_6188 107 . N T 99.7467 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=100;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 1/1:2:0,2:0:0:2:66:-6.26818,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_6189 74 . C T 724.528 . AB=0.276786;ABP=51.4807;AC=3;AF=0.5;AN=6;AO=31;CIGAR=1X;DP=112;DPB=112;DPRA=0;EPP=70.3259;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1209;QR=3072;RO=81;RPL=31;RPP=70.3259;RPPR=178.9;RPR=0;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:14,20:14:546:20:779:-60.1993,0,-39.2435 0/1:25:21,4:21:797:4:162:-7.44121,0,-64.5184 0/1:53:46,7:46:1729:7:268:-8.529,0,-139.915 dDocent_Contig_6190 37 . C A 1558.61 . AB=0.518519;ABP=3.17115;AC=4;AF=0.666667;AN=6;AO=49;CIGAR=1M1X;DP=75;DPB=75;DPRA=0;EPP=109.412;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1.66667;MQM=59.3265;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.918367;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1932;QR=854;RO=22;RPL=0;RPP=109.412;RPPR=50.7827;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:21:0,0,0,21:0:0:0,0,21:0,0,823:-74.3874,-74.3874,-74.3874,-74.3874,-74.3874,-74.3874,-6.32163,-6.32163,-6.32163,0 0|1:27:10,0,2,15:10:376:0,2,15:0,62,589:-44.5612,-47.5715,-78.3723,-42.6045,-73.4017,-72.7997,0,-30.8559,-25.891,-26.3405 0|1:27:12,2,0,13:12:478:2,0,13:78,0,520:-39.2307,-36.4326,-75.1891,-42.8431,-75.7911,-82.2022,0,-32.9557,-39.3663,-35.4529 dDocent_Contig_6191 41 . G C 32.6576 . AB=0.2;ABP=10.8276;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=31;DPB=31;DPRA=0.952381;EPP=7.35324;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=1155;RO=29;RPL=0;RPP=7.35324;RPPR=65.983;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:548:0:0:0,-4.21442,-49.6605 0/1:10:8,2:8:324:2:79:-4.48733,0,-26.5185 0/0:7:7,0:7:283:0:0:0,-2.10721,-25.8434 dDocent_Contig_6192 8 . T C 4149.94 . AB=0.54717;ABP=9.15598;AC=4;AF=0.666667;AN=6;AO=174;CIGAR=1X2M;DP=318;DPB=318;DPRA=0;EPP=380.846;EPPR=207.129;GTI=0;LEN=1;MEANALT=5.66667;MQM=42.9138;MQMR=53.7872;NS=3;NUMALT=2;ODDS=5.55112e-17;PAIRED=0.511494;PAIREDR=0.648936;PAO=0;PQA=0;PQR=0;PRO=0;QA=5792;QR=3559;RO=94;RPL=0;RPP=380.846;RPPR=207.129;RPR=174;RUN=1;SAF=174;SAP=380.846;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:121:40,14,60:40:1492:14,60:527,2051:-148.579,-119.583,-235.647,0,-79.2385,-102.208 0|1:82:46,2,30:46:1757:2,30:72,1100:-70.3664,-78.5296,-220.227,0,-136.602,-133.254 1|1:115:8,9,84:8:310:9,84:335,2641:-199.456,-175.399,-197.746,-1.40132,0,-1.16882 dDocent_Contig_6193 19 . C T 966.677 . AB=0.0999432;ABP=2451.04;AC=3;AF=0.5;AN=6;AO=176;CIGAR=1X;DP=1761;DPB=1761;DPRA=0;EPP=385.189;EPPR=3440.45;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.11022e-16;PAIRED=0.835227;PAIREDR=0.74163;PAO=0;PQA=0;PQR=0;PRO=0;QA=6999;QR=63132;RO=1583;RPL=0;RPP=385.189;RPPR=3440.45;RPR=176;RUN=1;SAF=176;SAP=385.189;SAR=0;SRF=1583;SRP=3440.45;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:613:547,65:547:21746:65:2569:-47.0116,0,-1771 0/1:574:518,56:518:20619:56:2255:-30.326,0,-1681.21 0/1:574:518,55:518:20767:55:2175:-23.0468,0,-1694.35 dDocent_Contig_6194 9 . C T 595.111 . AB=0.100543;ABP=2043.16;AC=3;AF=0.5;AN=6;AO=148;CIGAR=1X;DP=1472;DPB=1472;DPRA=0;EPP=324.388;EPPR=2867.19;GTI=0;LEN=1;MEANALT=1.33333;MQM=58.4662;MQMR=59.5578;NS=3;NUMALT=1;ODDS=0;PAIRED=0.918919;PAIREDR=0.921391;PAO=0;PQA=0;PQR=0;PRO=0;QA=5663;QR=49994;RO=1323;RPL=0;RPP=324.388;RPPR=2875.87;RPR=148;RUN=1;SAF=148;SAP=324.388;SAR=0;SRF=1322;SRP=2867.19;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:358:320,38:320:11953:38:1444:-19.7965,0,-955.966 0/1:624:557,66:557:21078:66:2509:-36.8484,0,-1707.26 0/1:490:446,44:446:16963:44:1710:-6.58287,0,-1375.44 dDocent_Contig_6196 14 . C T 56.1785 . AB=0.148148;ABP=32.0437;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=54;DPB=54;DPRA=2.2;EPP=13.8677;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=0.755102;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=1967;RO=49;RPL=0;RPP=13.8677;RPPR=109.412;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:16,1:16:631:1:41:0,-1.02294,-53.0299 0/1:27:23,4:23:928:4:162:-6.83915,0,-75.6921 0/0:10:10,0:10:408:0:0:0,-3.0103,-37.0806 dDocent_Contig_6197 17 . C T 580.438 . AB=0.201439;ABP=110.631;AC=2;AF=0.333333;AN=6;AO=28;CIGAR=1X;DP=219;DPB=219;DPRA=0.86875;EPP=63.8115;EPPR=417.762;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1128;QR=7588;RO=191;RPL=0;RPP=63.8115;RPPR=417.762;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=191;SRP=417.762;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:47,7:47:1853:7:282:-9.49676,0,-150.729 0/1:85:64,21:64:2528:21:846:-50.8658,0,-202.086 0/0:80:80,0:80:3207:0:0:0,-24.0824,-288.695 dDocent_Contig_6198 10 . G C 322.747 . AB=0.285714;ABP=5.80219;AC=2;AF=0.333334;AN=6;AO=2;CIGAR=1X5M1X1M1X;DP=38;DPB=38;DPRA=0;EPP=7.35324;EPPR=48.6112;GTI=0;LEN=1;MEANALT=3;MQM=44;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=802;RO=21;RPL=0;RPP=7.35324;RPPR=48.6112;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:19:12,0,0,6:12:461:0,0,6:0,0,241:-16.2475,-19.8598,-57.6901,-19.8598,-57.6901,-57.6901,0,-37.8266,-37.8266,-36.0204 0|0:12:9,0,0,3:9:341:0,0,3:0,0,120:-7.57495,-10.2842,-38.2247,-10.2842,-38.2247,-38.2247,0,-28.3348,-28.3348,-27.4317 1|1:7:0,4,2,0:0:0:4,2,0:152,79,0:-12.1689,-6.29585,-5.09173,-5.86276,0,-5.2607,-12.1689,-6.29585,-5.86276,-12.1689 dDocent_Contig_6199 7 . A T 1705.74 . AB=0.0406091;ABP=364.125;AC=0;AF=0;AN=6;AO=8;CIGAR=1X2M1X1M1X1M;DP=197;DPB=196.571;DPRA=0;EPP=20.3821;EPPR=68.1545;GTI=0;LEN=1;MEANALT=6.33333;MQM=20.75;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=1;PAO=1.35;PQA=18.25;PQR=0;PRO=0.6;QA=166;QR=1180;RO=30;RPL=0;RPP=20.3821;RPPR=68.1545;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:67:9,5,1,14,16,20:9:351:5,1,14,16,20:108,37,223,622,674:-56.6412,-52.4817,-79.8471,-56.3215,-78.3238,-84.891,-47.0298,-69.0355,-72.8696,-71.6833,-21.7754,-43.7871,-47.6245,-38.3449,-45.837,-8.69615,-30.7126,-34.5501,-25.2726,0,-31.5589 0|0:65:6,2,4,25,9,14:6:238:2,4,25,9,14:44,155,565,354,512:-53.0662,-52.0539,-71.0556,-42.1299,-58.9167,-60.5311,-20.0953,-36.8837,-26.958,-32.1713,-32.2574,-49.0456,-39.1213,-17.0979,-49.1545,-15.155,-31.9464,-22.0203,0,-12.1469,-30.5503 0|0:65:15,1,1,20,1,24:15:591:1,1,20,1,24:14,40,443,40,884:-64.5835,-68.4065,-116.754,-65.8014,-113.759,-114.15,-38.5073,-86.4604,-83.8547,-81.1302,-65.8014,-113.759,-111.155,-83.8547,-114.15,0,-47.997,-45.3906,-18.1182,-45.3906,-41.464 dDocent_Contig_6200 84 . A G 53.6597 . AB=0.272727;ABP=7.94546;AC=1;AF=0.25;AN=4;AO=3;CIGAR=1X;DP=18;DPB=18;DPRA=1.57143;EPP=9.52472;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=108;QR=520;RO=15;RPL=3;RPP=9.52472;RPPR=35.5824;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:247:0:0:0,-2.10721,-22.5731 0/1:11:8,3:8:273:3:108:-6.76384,0,-21.5898 ./.:.:.:.:.:.:.:. dDocent_Contig_6201 36 . A G 77.0946 . AB=0.235294;ABP=13.3567;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=70;DPB=70;DPRA=0.641509;EPP=11.6962;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.984848;PAO=0;PQA=0;PQR=0;PRO=0;QA=152;QR=2597;RO=66;RPL=0;RPP=11.6962;RPPR=146.327;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:47:47,0:47:1842:0:0:0,-14.1484,-165.999 0/1:17:13,4:13:522:4:152:-8.93122,0,-42.2084 0/0:6:6,0:6:233:0:0:0,-1.80618,-21.3387 dDocent_Contig_6202 116 . G T 70.3127 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=1X;DP=27;DPB=27;DPRA=0.16;EPP=7.35324;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.77626e-21;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=840;RO=25;RPL=0;RPP=7.35324;RPPR=57.2971;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 0/0:7:7,0:7:217:0:0:0,-2.10721,-19.8325 0/0:18:18,0:18:623:0:0:0,-5.41854,-56.3953 dDocent_Contig_6203 37 . T A 50.5671 . AB=0.1875;ABP=16.582;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=2X;DP=35;DPB=35;DPRA=1.68421;EPP=9.52472;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=1259;RO=32;RPL=0;RPP=9.52472;RPPR=72.4974;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:8:8,0:8:313:0:0:0,-2.40824,-28.5338 0|0:11:11,0:11:437:0:0:0,-3.31133,-39.6849 0|1:16:13,3:13:509:3:119:-6.27853,0,-41.3361 dDocent_Contig_6204 79 . G C 58.5946 . AB=0.132075;ABP=65.3275;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X;DP=53;DPB=53;DPRA=0;EPP=18.2106;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=271;QR=1729;RO=46;RPL=7;RPP=18.2106;RPPR=102.898;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:26,3:26:968:3:122:-2.64262,0,-78.6967 0/1:13:11,2:11:422:2:71:-2.82769,0,-34.4184 0/1:11:9,2:9:339:2:78:-4.09214,0,-27.5525 dDocent_Contig_6205 9 . C T 126.319 . AB=0.194444;ABP=32.2045;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=2X;DP=57;DPB=57;DPRA=0.857143;EPP=18.2106;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=1927;RO=50;RPL=0;RPP=18.2106;RPPR=111.584;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:21:21,0:21:815:0:0:0,-6.32163,-73.6736 0|1:16:12,4:12:448:4:159:-9.87585,0,-35.8441 0|1:20:17,3:17:664:3:119:-5.07479,0,-54.0746 dDocent_Contig_6207 42 . A T 290.186 . AB=0.315789;ABP=14.2105;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=38;DPB=38;DPRA=0;EPP=29.068;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=478;QR=1041;RO=26;RPL=0;RPP=29.068;RPPR=59.4686;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:5,3:5:204:3:121:-8.87196,0,-16.3358 0/1:9:7,2:7:276:2:81:-4.97646,0,-22.4986 0/1:21:14,7:14:561:7:276:-18.8868,0,-44.5101 dDocent_Contig_6208 14 . C T 37.9111 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=30;DPB=30;DPRA=0.608696;EPP=7.35324;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=0.857143;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=1121;RO=28;RPL=0;RPP=7.35324;RPPR=63.8115;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:474:0:0:0,-3.61236,-43.0104 0/1:7:5,2:5:199:2:75:-5.01289,0,-16.1811 0/0:11:11,0:11:448:0:0:0,-3.31133,-40.676 dDocent_Contig_6209 49 . A G 74.0645 . AB=0.2;ABP=18.6449;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=28;DPB=28;DPRA=1.25;EPP=11.6962;EPPR=32.3252;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=932;RO=24;RPL=0;RPP=11.6962;RPPR=32.3252;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:6,3:6:240:3:118:-8.29345,0,-19.2653 0/0:8:8,0:8:293:0:0:0,-2.40824,-26.7086 0/1:11:10,1:10:399:1:41:-0.783237,0,-32.9575 dDocent_Contig_6210 73 . G T 255.077 . AB=0.444444;ABP=3.73412;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=27;DPB=27;DPRA=0;EPP=29.068;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=397;QR=498;RO=15;RPL=12;RPP=29.068;RPPR=35.5824;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:1,8:1:35:8:266:-21.5563,0,-0.789359 0/1:9:7,2:7:231:2:64:-3.36928,0,-18.4046 0/1:9:7,2:7:232:2:67:-3.65377,0,-18.4954 dDocent_Contig_6212 22 . G A 284.746 . AB=0.324324;ABP=12.9286;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=37;DPB=37;DPRA=0;EPP=29.068;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.916667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=469;QR=995;RO=25;RPL=0;RPP=29.068;RPPR=57.2971;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:12,4:12:475:4:153:-9.32264,0,-38.2796 0/1:12:10,2:10:401:2:76:-3.6019,0,-32.8368 0/1:9:3,6:3:119:6:240:-19.2659,0,-8.38574 dDocent_Contig_6213 9 . C T 4421.63 . AB=0.300493;ABP=213.558;AC=3;AF=0.5;AN=6;AO=183;CIGAR=1X;DP=609;DPB=609;DPRA=0;EPP=400.39;EPPR=928.058;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.846995;PAIREDR=0.826291;PAO=0;PQA=0;PQR=0;PRO=0;QA=6984;QR=16349;RO=426;RPL=0;RPP=400.39;RPPR=928.058;RPR=183;RUN=1;SAF=183;SAP=400.39;SAR=0;SRF=426;SRP=928.058;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:319:231,88:231:8851:88:3348:-205.436,0,-700.304 0/1:189:131,58:131:5012:58:2232:-144.206,0,-394.208 0/1:101:64,37:64:2486:37:1404:-96.2371,0,-193.532 dDocent_Contig_6214 26 . G A 164.899 . AB=0.291667;ABP=12.0581;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=51;DPB=51;DPRA=1.77778;EPP=18.2106;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=1708;RO=44;RPL=0;RPP=18.2106;RPPR=98.5551;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:886:0:0:0,-6.92369,-80.0457 0/0:4:4,0:4:162:0:0:0,-1.20412,-14.967 0/1:24:17,7:17:660:7:273:-17.7114,0,-52.4987 dDocent_Contig_6215 107 . N A 345.866 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=26.8965;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=6.77626e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=368;QR=0;RO=0;RPL=0;RPP=26.8965;RPPR=0;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0 1/1:7:0,7:0:0:7:233:-21.2965,-2.10721,0 1/1:3:0,3:0:0:3:103:-9.60997,-0.90309,0 dDocent_Contig_6216 17 . T A 563.323 . AB=0.0833333;ABP=75.3927;AC=2;AF=0.333334;AN=6;AO=4;CIGAR=5X1M1X2M1X4M;DP=67;DPB=67.4286;DPRA=0;EPP=11.6962;EPPR=63.8115;GTI=0;LEN=1;MEANALT=4.5;MQM=54.5;MQMR=60;NS=3;NUMALT=6;ODDS=0;PAIRED=0.75;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=143;QR=1087;RO=28;RPL=0;RPP=11.6962;RPPR=63.8115;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:11,3,0,0,2,0,0:11:423:3,0,0,2,0,0:117,0,0,80,0,0:-6.30556,0,-33.8198,-9.61689,-34.7229,-44.341,-9.61689,-34.7229,-44.341,-44.341,-3.02384,-28.1309,-37.7494,-37.7494,-37.1473,-9.61689,-34.7229,-44.341,-44.341,-37.7494,-44.341,-9.61689,-34.7229,-44.341,-44.341,-37.7494,-44.341,-44.341 0|0:27:11,0,0,3,3,6,2:11:431:0,0,3,3,6,2:0,0,116,114,239,62:-16.0118,-19.3231,-54.771,-19.3231,-54.771,-54.771,-9.79271,-45.2425,-45.2425,-44.3394,-9.97903,-45.4281,-45.4281,-35.8996,-44.525,0,-35.4544,-35.4544,-25.9254,-26.1112,-33.6483,-14.4267,-49.8707,-49.8707,-40.343,-40.5286,-30.5558,-49.2686 0|1:21:6,0,12,0,0,0,2:6:233:0,12,0,0,0,2:0,480,0,0,0,81:-37.7315,-39.5377,-58.679,0,-19.1348,-15.5225,-39.5377,-58.679,-19.1348,-58.679,-39.5377,-58.679,-19.1348,-58.679,-58.679,-39.5377,-58.679,-19.1348,-58.679,-58.679,-58.679,-32.8579,-51.999,-12.4523,-51.999,-51.999,-51.999,-51.3969 dDocent_Contig_6217 114 . G T 114.539 . AB=0.625;ABP=4.09604;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=45;DPB=45;DPRA=2.3125;EPP=18.2106;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=230;QR=1247;RO=38;RPL=0;RPP=18.2106;RPPR=85.5263;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=85.5263;SRR=38;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:27,2:27:888:2:66:0,-2.46169,-73.9563 0/1:8:3,5:3:99:5:164:-12.6757,0,-6.82916 0/0:8:8,0:8:260:0:0:0,-2.40824,-23.7178 dDocent_Contig_6218 178 . T C 75.9002 . AB=0.222222;ABP=15.074;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=45;DPB=45;DPRA=1.33333;EPP=11.6962;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=1635;RO=41;RPL=4;RPP=11.6962;RPPR=92.0407;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=92.0407;SRR=41;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:832:0:0:0,-6.32163,-75.1925 0/0:6:6,0:6:238:0:0:0,-1.80618,-21.7923 0/1:18:14,4:14:565:4:154:-8.81178,0,-45.7736 dDocent_Contig_6219 131 . G A 45.3679 . AB=0.666667;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=29;DPB=29;DPRA=0.230769;EPP=7.35324;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=812;RO=27;RPL=0;RPP=7.35324;RPPR=61.6401;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:553:0:0:0,-5.41854,-50.0652 0/0:8:8,0:8:226:0:0:0,-2.40824,-20.6173 0/1:3:1,2:1:33:2:70:-5.74431,0,-2.39604 dDocent_Contig_6220 67 . T A 318.929 . AB=0.419355;ABP=4.76149;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=31;DPB=31;DPRA=0;EPP=31.2394;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.882353;PAO=0;PQA=0;PQR=0;PRO=0;QA=486;QR=657;RO=17;RPL=13;RPP=31.2394;RPPR=39.9253;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:5,1:5:194:1:38:-1.99109,0,-16.0252 0/1:15:5,9:5:192:9:334:-25.9614,0,-13.1883 0/1:10:7,3:7:271:3:114:-7.62168,0,-21.746 dDocent_Contig_6221 40 . T G 131.335 . 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AB=0.2;ABP=22.5536;AC=3;AF=0.5;AN=6;AO=5;CIGAR=1X;DP=25;DPB=25;DPRA=0;EPP=13.8677;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.95;PAO=0;PQA=0;PQR=0;PRO=0;QA=187;QR=802;RO=20;RPL=0;RPP=13.8677;RPPR=46.4397;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:8,2:8:317:2:76:-4.20396,0,-25.885 0/1:11:10,1:10:403:1:41:-0.783237,0,-33.3185 0/1:4:2,2:2:82:2:70:-5.44039,0,-6.57556 dDocent_Contig_6223 13 . G C 148.955 . 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AB=0.171053;ABP=74.4403;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=76;DPB=76;DPRA=0;EPP=31.2394;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.923077;PAIREDR=0.634921;PAO=0;PQA=0;PQR=0;PRO=0;QA=521;QR=2496;RO=63;RPL=0;RPP=31.2394;RPPR=139.813;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:21,4:21:823:4:158:-7.07473,0,-66.8605 0/1:28:23,5:23:904:5:199:-9.8586,0,-73.2326 0/1:23:19,4:19:769:4:164:-8.22621,0,-62.6065 dDocent_Contig_6227 24 . A T 1909.75 . AB=0.0461538;ABP=119.301;AC=0;AF=0;AN=6;AO=3;CIGAR=5M8I5M1X2M1X3M1X3M;DP=185;DPB=250.952;DPRA=0;EPP=9.52472;EPPR=42.0968;GTI=0;LEN=1;MEANALT=15;MQM=51;MQMR=60;NS=3;NUMALT=10;ODDS=0;PAIRED=0;PAIREDR=0.944444;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=709;RO=18;RPL=0;RPP=9.52472;RPPR=42.0968;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:65:8,4,0,0,0,0,9,12,3,0,2:8:311:4,0,0,0,0,9,12,3,0,2:150,0,0,0,0,350,467,114,0,67:-39.0998,-29.6102,-53.9673,-41.5081,-55.1715,-67.069,-41.5081,-55.1715,-67.069,-67.069,-41.5081,-55.1715,-67.069,-67.069,-67.069,-41.5081,-55.1715,-67.069,-67.069,-67.069,-67.069,-12.7393,-26.4039,-38.3019,-38.3019,-38.3019,-38.3019,-35.5926,-3.20659,-16.8717,-28.7698,-28.7698,-28.7698,-28.7698,0,-25.1575,-32.2173,-45.881,-57.7786,-57.7786,-57.7786,-57.7786,-29.011,-19.4788,-56.8755,-41.5081,-55.1715,-67.069,-67.069,-67.069,-67.069,-38.3019,-28.7698,-57.7786,-67.069,-36.0827,-49.7461,-61.6436,-61.6436,-61.6436,-61.6436,-32.8764,-23.3444,-52.3532,-61.6436,-61.0416 0|0:34:0,1,10,3,0,3,0,1,0,4,2:0:0:1,10,3,0,3,0,1,0,4,2:39,398,112,0,107,0,40,0,146,70:-44.7126,-41.6623,-41.3613,-11.9288,-8.87807,-8.91854,-35.6605,-32.6102,-2.87524,-34.7574,-44.7126,-41.6623,-11.9288,-35.6605,-44.7126,-36.0057,-32.9554,-3.22098,-26.9538,-36.0057,-35.1026,-44.7126,-41.6623,-11.9288,-35.6605,-44.7126,-36.0057,-44.7126,-41.4166,-38.3663,-8.632,-32.3645,-41.4166,-32.7096,-41.4166,-41.1156,-44.7126,-41.6623,-11.9288,-35.6605,-44.7126,-36.0057,-44.7126,-41.4166,-44.7126,-32.7856,-29.7354,0,-23.7337,-32.7856,-24.079,-32.7856,-29.4895,-32.7856,-31.5815,-39.111,-36.0607,-6.32693,-30.0591,-39.111,-30.4043,-39.111,-35.815,-39.111,-27.1843,-38.5089 0|0:86:10,26,0,0,8,2,4,21,0,2,0:10:398:26,0,0,8,2,4,21,0,2,0:1025,0,0,253,71,152,818,0,78,0:-110.879,-34.2701,-59.22,-113.889,-67.0468,-146.664,-113.889,-67.0468,-146.664,-146.664,-93.5536,-46.714,-126.328,-126.328,-123.92,-108.115,-61.2733,-140.89,-140.89,-120.555,-140.288,-101.424,-54.5823,-134.2,-134.2,-113.864,-128.426,-132.996,-46.8428,0,-79.6199,-79.6199,-59.2856,-73.8462,-67.1551,-73.2983,-113.889,-67.0468,-146.664,-146.664,-126.328,-140.89,-134.2,-79.6199,-146.664,-107.477,-60.6345,-140.252,-140.252,-119.916,-134.478,-127.788,-73.2075,-140.252,-139.65,-113.889,-67.0468,-146.664,-146.664,-126.328,-140.89,-134.2,-79.6199,-146.664,-140.252,-146.664 dDocent_Contig_6228 200 . A G 413.645 . AB=0.269231;ABP=15.0369;AC=4;AF=0.666667;AN=6;AO=15;CIGAR=1X;DP=34;DPB=34;DPRA=0;EPP=35.5824;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=558;QR=726;RO=19;RPL=15;RPP=35.5824;RPPR=44.2683;RPR=0;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:8:0,8:0:0:8:287:-26.1725,-2.40824,0 0/1:8:7,1:7:264:1:37:-1.28959,0,-21.7118 0/1:18:12,6:12:462:6:234:-16.0126,0,-36.5113 dDocent_Contig_6229 11 . G T 71.0995 . AB=0.178571;ABP=28.1373;AC=2;AF=0.5;AN=4;AO=5;CIGAR=1X;DP=28;DPB=28;DPRA=0;EPP=13.8677;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=192;QR=919;RO=23;RPL=0;RPP=13.8677;RPPR=52.9542;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:15,3:15:597:3:114:-5.21155,0,-48.6511 0/1:10:8,2:8:322:2:78:-4.393,0,-26.3386 ./.:.:.:.:.:.:.:. dDocent_Contig_6230 35 . C T 1456.86 . AB=0.727273;ABP=32.6213;AC=3;AF=0.5;AN=6;AO=48;CIGAR=1X;DP=66;DPB=66;DPRA=0;EPP=107.241;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=59.75;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.9375;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1870;QR=715;RO=18;RPL=0;RPP=107.241;RPPR=42.0968;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:4,24:4:159:24:927:-75.2977,0,-6.26311 0/1:9:6,3:6:238:3:111:-7.64122,0,-19.0847 0/1:29:8,21:8:318:21:832:-66.4636,0,-20.255 dDocent_Contig_6231 37 . T C 162.271 . AB=0.28;ABP=13.5202;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=33;DPB=33;DPRA=1.5625;EPP=18.2106;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=281;QR=1032;RO=26;RPL=0;RPP=18.2106;RPPR=59.4686;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:4,5:4:159:5:199:-15.5787,0,-11.9822 0/1:16:14,2:14:550:2:82:-2.9632,0,-45.0191 0/0:8:8,0:8:323:0:0:0,-2.40824,-29.4392 dDocent_Contig_6232 12 . C T 41.7627 . AB=0.214286;ABP=12.937;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=26;DPB=26;DPRA=2.33333;EPP=9.52472;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=103;QR=890;RO=23;RPL=0;RPP=9.52472;RPPR=52.9542;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 0/1:14:11,3:11:419:3:103:-5.39518,0,-33.8452 0/0:11:11,0:11:431:0:0:0,-3.31133,-39.1399 dDocent_Contig_6234 16 . G T 1759.68 . AB=0.191898;ABP=389.713;AC=3;AF=0.5;AN=6;AO=90;CIGAR=1X;DP=469;DPB=469;DPRA=0;EPP=198.443;EPPR=825.998;GTI=0;LEN=1;MEANALT=1;MQM=59.9111;MQMR=59.9604;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3556;QR=14882;RO=379;RPL=0;RPP=198.443;RPPR=825.998;RPR=90;RUN=1;SAF=90;SAP=198.443;SAR=0;SRF=379;SRP=825.998;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:194:162,32:162:6353:32:1249:-54.2884,0,-513.174 0/1:137:94,43:94:3699:43:1702:-112.165,0,-291.704 0/1:138:123,15:123:4830:15:605:-13.2306,0,-393.057 dDocent_Contig_6235 14 . T A 146.8 . AB=0.166667;ABP=55.1256;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=149;DPB=149;DPRA=0;EPP=33.4109;EPPR=296.159;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=55.2;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.651852;PAO=0;PQA=0;PQR=0;PRO=0;QA=553;QR=5393;RO=135;RPL=0;RPP=33.4109;RPPR=296.159;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=135;SRP=296.159;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:45,9:45:1812:9:350:-15.6008,0,-142.441 0/0:59:55,4:55:2182:4:162:0,-2.79381,-177.482 0/0:36:35,1:35:1399:1:41:0,-6.74251,-114.94 dDocent_Contig_6236 209 . N G 230.533 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=0;RO=0;RPL=6;RPP=16.0391;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:203:-18.6531,-1.50515,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 dDocent_Contig_6238 54 . C T 75.981 . AB=0.118421;ABP=99.1265;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=98;DPB=98;DPRA=1.72727;EPP=22.5536;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=356;QR=3534;RO=89;RPL=9;RPP=22.5536;RPPR=196.271;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:32,4:32:1280:4:153:-3.30321,0,-104.626 0/1:40:35,5:35:1370:5:203:-6.61186,0,-111.513 0/0:22:22,0:22:884:0:0:0,-6.62266,-79.8668 dDocent_Contig_6239 11 . C A 62.5434 . AB=0.138889;ABP=43.7857;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=106;DPB=106;DPRA=1.02857;EPP=13.8677;EPPR=205.301;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.950495;PAO=0;PQA=0;PQR=0;PRO=0;QA=196;QR=4005;RO=101;RPL=0;RPP=13.8677;RPPR=222.329;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=99;SRP=205.301;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:31,5:31:1234:5:196:-7.17515,0,-100.494 0/0:52:52,0:52:2057:0:0:0,-15.6536,-185.324 0/0:18:18,0:18:714:0:0:0,-5.41854,-64.5859 dDocent_Contig_6241 19 . C T 39.2136 . AB=0.142857;ABP=26.2761;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=126;DPB=126;DPRA=0.440299;EPP=11.6962;EPPR=267.93;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.762295;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=4826;RO=122;RPL=0;RPP=11.6962;RPPR=267.93;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=122;SRP=267.93;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:67:67,0:67:2625:0:0:0,-20.169,-236.393 0/0:38:37,1:37:1471:1:37:0,-7.74131,-128.948 0/1:21:18,3:18:730:3:123:-5.14316,0,-59.7032 dDocent_Contig_6242 58 . G A 81.6923 . AB=0.235294;ABP=13.3567;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X1M1X;DP=84;DPB=84;DPRA=0.507463;EPP=11.6962;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.833333;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=3042;RO=78;RPL=4;RPP=11.6962;RPPR=172.385;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:37:35,0,2:35:1360:0,2:0,71:0,-10.536,-122.314,-4.39773,-116.532,-115.93 0|0:30:30,0,0:30:1167:0,0:0,0:0,-9.0309,-105.321,-9.0309,-105.321,-105.321 0|1:17:13,4,0:13:515:4,0:157,0:-9.39108,0,-41.5811,-13.3045,-42.7853,-55.6968 dDocent_Contig_6243 17 . G T 606.546 . AB=0.446809;ABP=4.16534;AC=2;AF=0.333333;AN=6;AO=21;CIGAR=1X;DP=64;DPB=64;DPRA=1.38235;EPP=48.6112;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.906977;PAO=0;PQA=0;PQR=0;PRO=0;QA=849;QR=1707;RO=43;RPL=0;RPP=48.6112;RPPR=96.3836;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:21,4:21:846:4:160:-7.25805,0,-68.9251 0/0:17:17,0:17:680:0:0:0,-5.11751,-61.5306 0/1:22:5,17:5:181:17:689:-55.7153,0,-10.0103 dDocent_Contig_6244 14 . G T 459.798 . AB=0.435897;ABP=4.40227;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=78;DPB=78;DPRA=0;EPP=42.0968;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=698;QR=2341;RO=60;RPL=0;RPP=42.0968;RPPR=133.299;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:38,1:38:1476:1:39:0,-7.84361,-129.197 0/1:24:11,13:11:427:13:499:-38.0302,0,-31.5555 0/1:15:11,4:11:438:4:160:-10.2684,0,-35.257 dDocent_Contig_6245 13 . C A 1064.58 . AB=0.0816327;ABP=77.5051;AC=0;AF=0;AN=6;AO=4;CIGAR=4M1X;DP=94;DPB=94;DPRA=0;EPP=11.6962;EPPR=58.0041;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=58.7209;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.883721;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=1665;RO=43;RPL=0;RPP=11.6962;RPPR=96.3836;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=38;SRP=58.0041;SRR=5;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:45:17,3,25,0:17:648:3,25,0:116,879,0:-63.7363,-59.3207,-111.584,0,-43.6157,-45.6188,-68.8538,-112.487,-53.1446,-122.017 0|0:10:4,0,5,1:4:153:0,5,1:0,151,41:-10.7149,-11.9191,-23.7135,0,-11.7386,-10.2334,-8.5168,-20.3212,-8.34471,-20.0202 0|0:39:22,0,14,3:22:864:0,14,3:0,530,121:-35.7235,-42.3461,-113.4,0,-71.035,-66.8206,-32.3661,-103.424,-61.0595,-102.521 dDocent_Contig_6247 60 . A T 36.5378 . AB=0;ABP=0;AC=2;AF=0.5;AN=4;AO=3;CIGAR=2X;DP=4;DPB=4;DPRA=3;EPP=3.73412;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=11.3333;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=1;SAP=3.73412;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:1:0,0:0:0:0:0:0,0,0 1|1:3:0,3:0:0:3:115:-3.17,-0.90309,0 .:.:.:.:.:.:.:. dDocent_Contig_6249 12 . G A 405.033 . AB=0.365854;ABP=9.41879;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X2M1X;DP=55;DPB=55;DPRA=0;EPP=37.7539;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.939394;PAO=0;PQA=0;PQR=0;PRO=0;QA=626;QR=1283;RO=33;RPL=0;RPP=37.7539;RPPR=74.6689;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:14:13,1,0:13:505:1,0:37,0:0,-0.516591,-42.0977,-3.91339,-42.3987,-45.4244 0|1:23:9,8,5:9:349:8,5:312,193:-22.9383,0,-26.2643,-9.79846,-12.8226,-36.9641 0|1:18:11,7,0:11:429:7,0:277,0:-19.8819,0,-33.5444,-23.1933,-35.6516,-58.4518 dDocent_Contig_6251 127 . T A 124.579 . AB=0.28;ABP=13.5202;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=2X;DP=60;DPB=60;DPRA=1.42857;EPP=18.2106;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=1752;RO=53;RPL=0;RPP=18.2106;RPPR=118.098;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=118.098;SRR=53;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:33:33,0:33:1087:0:0:0,-9.93399,-98.1268 0|1:25:18,7:18:595:7:232:-13.6783,0,-46.3387 0|0:2:2,0:2:70:0:0:0,-0.60206,-6.6474 dDocent_Contig_6252 8 . T C 777.966 . AB=0.491228;ABP=3.0484;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X1M1X;DP=57;DPB=57;DPRA=0;EPP=63.8115;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1082;QR=1031;RO=27;RPL=0;RPP=63.8115;RPPR=61.6401;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:18:10,8:10:378:8:305:-22.3916,0,-28.9546 0|1:12:5,7:5:194:7:270:-21.0533,0,-14.2205 0|1:27:12,13:12:459:13:507:-38.0684,0,-33.7493 dDocent_Contig_6253 22 . C T 33.602 . AB=0.181818;ABP=12.6832;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=24;DPB=24;DPRA=1.69231;EPP=7.35324;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=890;RO=22;RPL=0;RPP=7.35324;RPPR=50.7827;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:9,2:9:366:2:80:-4.28046,0,-29.9938 0/0:4:4,0:4:162:0:0:0,-1.20412,-14.967 0/0:9:9,0:9:362:0:0:0,-2.70927,-32.9424 dDocent_Contig_6254 33 . T A 776.771 . AB=0.388889;ABP=10.7311;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X1M;DP=72;DPB=72;DPRA=0;EPP=63.8115;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1097;QR=1191;RO=31;RPL=0;RPP=63.8115;RPPR=70.3259;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:30:6,6,18:6:238:6,18:235,705:-56.1616,-38.6438,-56.4305,0,-0.272656,-14.1757 0|1:35:19,7,9:19:713:7,9:259,351:-23.1432,-7.68642,-63.9607,0,-37.2116,-55.686 0|1:7:6,0,1:6:240:0,1:0,41:-1.98736,-3.79354,-23.555,0,-20.1695,-19.8684 dDocent_Contig_6255 11 . A G 143.719 . AB=0.241379;ABP=19.8579;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=31;DPB=31;DPRA=7.25;EPP=18.2106;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.571429;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=274;QR=952;RO=24;RPL=0;RPP=18.2106;RPPR=55.1256;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:11,3:11:436:3:121:-7.06578,0,-35.3799 0/1:15:11,4:11:435:4:153:-9.6234,0,-34.9897 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 dDocent_Contig_6256 31 . A C 108.34 . AB=0.571429;ABP=3.32051;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=27;DPB=27;DPRA=0.7;EPP=11.6962;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=0.913043;PAO=0;PQA=0;PQR=0;PRO=0;QA=150;QR=893;RO=23;RPL=0;RPP=11.6962;RPPR=52.9542;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:3,4:3:120:4:150:-11.7548,0,-9.08048 0/0:12:12,0:12:472:0:0:0,-3.61236,-42.8284 0/0:8:8,0:8:301:0:0:0,-2.40824,-27.4397 dDocent_Contig_6257 7 . A G 2610.71 . AB=0.122066;ABP=267.267;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X4M;DP=213;DPB=213;DPRA=0;EPP=59.4686;EPPR=79.0118;GTI=0;LEN=1;MEANALT=7.66667;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=738;QR=1337;RO=35;RPL=0;RPP=59.4686;RPPR=79.0118;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:68:18,26,2,5,11:18:693:26,2,5,11:934,76,118,444:-70.5935,0,-49.0854,-69.7783,-50.6787,-126.084,-66.9131,-47.8176,-117.584,-122.312,-39.3983,-20.2991,-90.0777,-87.2105,-93 1|0:88:7,34,5,14,16:7:269:34,5,14,16:1235,184,395,633:-128.768,-30.0226,-41.8754,-115.831,-37.0658,-136.412,-99.5648,-20.8103,-106.606,-117.435,-78.7718,0,-85.8143,-69.5496,-96.0425 1|0:57:10,24,2,7,10:10:375:24,2,7,10:836,64,225,381:-65.3861,-0.53187,-24.0325,-63.2408,-26.1024,-93.3586,-50.2676,-13.1321,-75.8322,-78.8803,-37.1426,0,-62.7101,-49.7368,-64.8555 dDocent_Contig_6258 120 . T A 1244.35 . AB=0.408163;ABP=10.1895;AC=2;AF=0.333333;AN=6;AO=40;CIGAR=1M1X1M1X;DP=98;DPB=91.5;DPRA=0;EPP=89.8692;EPPR=59.4686;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1387;QR=878;RO=26;RPL=0;RPP=89.8692;RPPR=59.4686;RPR=40;RUN=1;SAF=0;SAP=89.8692;SAR=40;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:27:5,11,0,11:5:170:11,0,11:381,0,383:-46.824,-17.364,-27.8399,-48.3291,-31.1512,-62.1176,-17.1826,0,-30.9704,-27.6591 0|0:39:14,8,10,7:14:467:8,10,7:277,349,244:-24.1739,-5.87645,-41.2635,0,-15.2808,-34.7853,-8.54365,-23.8254,-17.9487,-44.2324 0|1:32:7,21,3,1:7:241:21,3,1:729,105,35:-57.1543,0,-13.2499,-50.718,-11.027,-69.3894,-56.4137,-16.7234,-67.4446,-75.6871 dDocent_Contig_6259 17 . C T 165.843 . AB=0.25;ABP=18.2106;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=76;DPB=76;DPRA=1.16667;EPP=18.2106;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.884058;PAO=0;PQA=0;PQR=0;PRO=0;QA=284;QR=2743;RO=69;RPL=0;RPP=18.2106;RPPR=152.842;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:21,7:21:826:7:284:-17.5052,0,-66.2235 0/0:26:26,0:26:1041:0:0:0,-7.82678,-93.9832 0/0:22:22,0:22:876:0:0:0,-6.62266,-79.1479 dDocent_Contig_6260 13 . G C 412.797 . AB=0.188034;ABP=101.914;AC=2;AF=0.333333;AN=6;AO=22;CIGAR=1X;DP=141;DPB=141;DPRA=2.4375;EPP=50.7827;EPPR=261.416;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=868;QR=4767;RO=119;RPL=0;RPP=50.7827;RPPR=261.416;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=119;SRP=261.416;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:24,12:24:940:12:460:-30.9013,0,-74.061 0/0:24:24,0:24:956:0:0:0,-7.22472,-86.3411 0/1:81:71,10:71:2871:10:408:-12.6972,0,-234.097 dDocent_Contig_6261 16 . C G 544.566 . AB=0.408163;ABP=6.59988;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X;DP=49;DPB=49;DPRA=0;EPP=46.4397;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=797;QR=1162;RO=29;RPL=0;RPP=46.4397;RPPR=65.983;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:18,17:18:717:17:676:-50.6325,0,-54.3193 0/1:6:4,2:4:160:2:80:-5.78561,0,-12.9776 0/1:8:7,1:7:285:1:41:-1.68633,0,-23.6162 dDocent_Contig_6262 22 . G A 97.8531 . 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AB=0.521739;ABP=3.29354;AC=3;AF=0.5;AN=6;AO=36;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=81.1833;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1432;QR=1259;RO=32;RPL=0;RPP=81.1833;RPPR=72.4974;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:14,13:14:554:13:510:-38.1121,0,-42.0752 0/1:22:15,6:15:589:6:238:-15.0813,0,-46.6367 0/1:20:3,17:3:116:17:684:-55.8696,0,-4.79618 dDocent_Contig_6264 35 . G A 6530.81 . AB=0.702128;ABP=69.7253;AC=4;AF=0.666667;AN=6;AO=201;CIGAR=1X1M;DP=260;DPB=260;DPRA=0;EPP=439.476;EPPR=107.241;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.995025;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8001;QR=1894;RO=48;RPL=0;RPP=439.476;RPPR=107.241;RPR=201;RUN=1;SAF=201;SAP=439.476;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:95:26,1,68:26:1030:1,68:39,2712:-215.515,-220.136,-304.609,0,-81.5743,-64.3099 0|1:93:19,7,64:19:746:7,64:271,2563:-205.426,-188.887,-248.128,0,-39.0913,-42.0839 1|1:72:3,0,69:3:118:0,69:0,2726:-234.459,-235.362,-245.068,-10.672,-20.7711,0 dDocent_Contig_6265 16 . T C 993.113 . AB=0.542373;ABP=3.93042;AC=2;AF=0.333333;AN=6;AO=32;CIGAR=1X2M2X;DP=59;DPB=59;DPRA=0;EPP=72.4974;EPPR=44.2683;GTI=0;LEN=1;MEANALT=2;MQM=47.0625;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1262;QR=729;RO=19;RPL=0;RPP=72.4974;RPPR=44.2683;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:22:7,15,0,0:7:276:15,0,0:598,0,0:-46.3544,0,-18.587,-48.4616,-23.1025,-71.1716,-48.4616,-23.1025,-71.1716,-71.1716 0|0:10:6,1,0,3:6:219:1,0,3:40,0,122:-8.26479,-6.81182,-24.3741,-10.071,-24.6752,-27.9386,0,-14.5981,-17.8643,-16.9612 0|1:27:6,16,4,0:6:234:16,4,0:624,48,0:-48.4088,0,-14.5498,-48.1877,-17.3914,-66.22,-50.215,-19.3663,-67.4241,-69.4632 dDocent_Contig_6266 23 . C A 223.446 . AB=0.875;ABP=12.7819;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=39;DPB=39;DPRA=0.516129;EPP=18.2106;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=283;QR=1279;RO=32;RPL=0;RPP=18.2106;RPPR=72.4974;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:400:0:0:0,-3.0103,-36.3559 0/1:8:1,7:1:38:7:283:-23.4348,0,-1.38903 0/0:21:21,0:21:841:0:0:0,-6.32163,-76.0018 dDocent_Contig_6267 13 . T C 3348.59 . 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AB=0.175676;ABP=70.6194;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=139;DPB=139;DPRA=0;EPP=33.4109;EPPR=274.444;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=566;QR=4821;RO=125;RPL=0;RPP=33.4109;RPPR=274.444;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=125;SRP=274.444;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:65:64,1:64:2482:1:40:0,-15.5713,-219.548 0/1:25:20,5:20:778:5:202:-11.0361,0,-62.8134 0/1:49:41,8:41:1561:8:324:-14.7784,0,-125.98 dDocent_Contig_6270 4 . T C 267.499 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=8;CIGAR=1X9I2M1X;DP=12;DPB=33.75;DPRA=4;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=288;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:1:0,0:0:0:0:0:0,0,0 1|1:3:0,0:0:0:0:0:0,0,0 1|1:8:0,8:0:0:8:288:-26.267,-2.40824,0 dDocent_Contig_6271 143 . A G 185.843 . AB=0.321429;ABP=10.7656;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=54;DPB=54;DPRA=8.5;EPP=24.725;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.977273;PAO=0;PQA=0;PQR=0;PRO=0;QA=343;QR=1224;RO=44;RPL=0;RPP=24.725;RPPR=98.5551;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=98.5551;SRR=44;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:22,1:22:587:1:33:0,-3.62455,-49.79 0/0:3:3,0:3:71:0:0:0,-0.90309,-6.62617 0/1:28:19,9:19:566:9:310:-19.8054,0,-42.8003 dDocent_Contig_6272 14 . C T 769.665 . AB=0.0877193;ABP=87.1644;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=2X1M;DP=85;DPB=85;DPRA=0;EPP=13.8677;EPPR=72.4974;GTI=0;LEN=1;MEANALT=4.5;MQM=21.2;MQMR=60;NS=3;NUMALT=7;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=106;QR=1254;RO=32;RPL=0;RPP=13.8677;RPPR=72.4974;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:27:13,0,0,10,1,0,2,1:13:508:0,0,10,1,0,2,1:0,0,395,18,0,79,41:-26.8217,-30.7351,-72.5079,-30.7351,-72.5079,-72.5079,0,-41.8168,-41.8168,-38.8065,-29.6998,-71.4653,-71.4653,-40.7795,-71.1642,-30.7351,-72.5079,-72.5079,-41.8168,-71.4653,-72.5079,-24.2281,-66.0055,-66.0055,-35.3132,-64.9636,-66.0055,-65.4035,-28.2872,-70.0587,-70.0587,-39.3692,-69.0165,-70.0587,-63.5565,-69.7576 1|0:30:2,0,8,8,4,3,0,5:2:69:0,8,8,4,3,0,5:0,318,305,88,123,0,194:-42.1372,-42.7393,-48.343,-16.5371,-22.1428,-19.7346,-20.6067,-26.2104,0,-23.8021,-37.128,-42.7297,-16.5358,-20.6079,-41.5256,-32.5793,-38.1836,-11.9773,-16.0481,-32.5721,-37.2805,-42.7393,-48.343,-22.1428,-26.2104,-42.7297,-38.1836,-48.343,-28.4251,-34.0289,-7.82245,-11.896,-28.421,-23.8677,-34.0289,-32.5238 0|1:28:17,2,5,4,0,0,0,0:17:677:2,5,4,0,0,0,0:80,204,152,0,0,0,0:-11.7242,-10.3071,-65.4532,0,-49.2213,-54.2506,-4.41095,-53.6185,-43.319,-58.9484,-16.8417,-66.0552,-55.7558,-60.1525,-72.5895,-16.8417,-66.0552,-55.7558,-60.1525,-72.5895,-72.5895,-16.8417,-66.0552,-55.7558,-60.1525,-72.5895,-72.5895,-72.5895,-16.8417,-66.0552,-55.7558,-60.1525,-72.5895,-72.5895,-72.5895,-72.5895 dDocent_Contig_6273 4 . T A 121.081 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=5I1X2M2X;DP=4;DPB=8;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=57;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=131;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:4:0,4:0:0:4:131:-12.107,-1.20412,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_6274 24 . C T 152.5 . AB=0.228571;ABP=25.4075;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X;DP=35;DPB=35;DPRA=0;EPP=20.3821;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=50.625;MQMR=55.037;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.888889;PAO=0;PQA=0;PQR=0;PRO=0;QA=316;QR=1060;RO=27;RPL=0;RPP=20.3821;RPPR=61.6401;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:9,1:9:355:1:36:-0.586265,0,-29.3017 0/1:15:12,3:12:460:3:121:-5.88035,0,-35.1405 0/1:10:6,4:6:245:4:159:-11.6667,0,-14.7506 dDocent_Contig_6276 7 . A C 163.346 . AB=0.195122;ABP=36.112;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X3M;DP=69;DPB=69;DPRA=0;EPP=20.3821;EPPR=115.927;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=310;QR=1975;RO=52;RPL=0;RPP=20.3821;RPPR=115.927;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:24:12,6,6:12:440:6,6:232,234:-15.6246,-0.182174,-34.3221,0,-16.8853,-34.1422 0|1:17:15,0,2:15:572:0,2:0,76:-2.09716,-6.61261,-53.5394,0,-47.3067,-46.7046 0|1:28:25,3,0:25:963:3,0:114,0:-2.20314,0,-78.5557,-9.72889,-79.4588,-88.8074 dDocent_Contig_6277 138 . C A 73.855 . AB=0.185185;ABP=26.2531;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=65;DPB=65;DPRA=1.42105;EPP=13.8677;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=182;QR=2179;RO=60;RPL=0;RPP=13.8677;RPPR=133.299;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=133.299;SRR=60;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:830:0:0:0,-6.92369,-75.0218 0/0:15:15,0:15:531:0:0:0,-4.51545,-48.12 0/1:27:22,5:22:818:5:182:-8.60735,0,-65.8185 dDocent_Contig_6278 19 . T G 164.769 . AB=0.2;ABP=34.2795;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=109;DPB=109;DPRA=1.15942;EPP=20.3821;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=323;QR=3989;RO=101;RPL=0;RPP=20.3821;RPPR=222.329;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:32,8:32:1235:8:323:-17.3978,0,-99.3702 0/0:32:32,0:32:1266:0:0:0,-9.63296,-114.209 0/0:37:37,0:37:1488:0:0:0,-11.1381,-134.164 dDocent_Contig_6280 19 . A G 679.466 . AB=0.489796;ABP=3.05462;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=49;DPB=49;DPRA=0;EPP=55.1256;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=948;QR=991;RO=25;RPL=0;RPP=55.1256;RPPR=57.2971;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:5,14:5:203:14:559:-44.9331,0,-12.9333 0/1:21:14,7:14:558:7:268:-18.1593,0,-44.24 0/1:9:6,3:6:230:3:121:-8.57093,0,-18.357 dDocent_Contig_6281 13 . A G 305.943 . AB=0.625;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=46;DPB=46;DPRA=7.16667;EPP=29.068;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=484;QR=1361;RO=34;RPL=0;RPP=29.068;RPPR=76.8404;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:25,2:25:995:2:81:0,-0.442076,-82.1612 0/1:16:6,10:6:243:10:403:-31.8134,0,-17.4317 0/0:3:3,0:3:123:0:0:0,-0.90309,-11.4648 dDocent_Contig_6282 10 . T C 876.096 . AB=0.356322;ABP=18.61;AC=3;AF=0.5;AN=6;AO=31;CIGAR=1X2M1X4M;DP=87;DPB=87;DPRA=0;EPP=70.3259;EPPR=79.0118;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1235;QR=1394;RO=35;RPL=0;RPP=70.3259;RPPR=79.0118;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:45:18,16,4,5:18:720:16,4,5:640,159,205:-47.3167,0,-54.5135,-39.6423,-46.2373,-97.755,-35.8096,-42.405,-82.0362,-93.623 0|1:18:5,7,0,5:5:197:7,0,5:276,0,197:-21.2339,0,-14.1262,-22.7391,-16.2334,-38.9539,-6.51629,-0.00111641,-22.7402,-21.235 0|1:24:12,8,0,4:12:477:8,0,4:319,0,164:-22.6511,0,-36.8544,-26.2635,-39.2626,-65.5329,-12.7234,-25.7232,-51.9946,-50.7905 dDocent_Contig_6283 110 . C A 153.989 . AB=0.32;ABP=10.0459;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=36;DPB=36;DPRA=1.13636;EPP=20.3821;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.125;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=962;RO=28;RPL=0;RPP=20.3821;RPPR=63.8115;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:377:0:0:0,-3.31133,-34.2609 0/1:7:3,4:3:105:4:140:-10.8377,0,-7.68895 0/1:18:14,4:14:480:4:133:-6.8799,0,-38.1088 dDocent_Contig_6284 14 . G A 141.679 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=146;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:72:-6.83664,-0.60206,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:74:-7.02588,-0.60206,0 dDocent_Contig_6287 35 . G A 305.371 . AB=0.324324;ABP=12.9286;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=8M1X6M;DP=142;DPB=137.667;DPRA=0.839623;EPP=37.7539;EPPR=263.587;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=632;QR=4696;RO=120;RPL=0;RPP=37.7539;RPPR=263.587;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:52:48,0,4:48:1871:0,4:0,162:0,-14.4494,-168.222,-0.686813,-154.862,-153.658 0|1:37:23,2,12:23:898:2,12:70,470:-31.7578,-32.992,-106.211,0,-68.1669,-70.2468 0|0:53:49,3,0:49:1927:3,0:121,0:0,-4.78117,-162.371,-14.7505,-163.274,-173.249 dDocent_Contig_6288 15 . A T 77.1349 . AB=0.134615;ABP=63.3104;AC=3;AF=0.5;AN=6;AO=7;CIGAR=2X;DP=52;DPB=52;DPRA=0;EPP=18.2106;EPPR=84.1269;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.777778;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=1770;RO=45;RPL=0;RPP=18.2106;RPPR=100.727;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=43;SRP=84.1269;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:24:22,2:22:866:2:77:-0.0834803,0,-71.0298 0|1:21:17,4:17:663:4:155:-8.00273,0,-53.6755 0|1:7:6,1:6:241:1:41:-1.98736,0,-19.9595 dDocent_Contig_6289 31 . A G 52.6305 . AB=0.153846;ABP=30.0702;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X1M1X;DP=50;DPB=50;DPRA=0.541667;EPP=11.6962;EPPR=98.5551;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=1758;RO=44;RPL=0;RPP=11.6962;RPPR=98.5551;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:20:16,3:16:633:3:120:-5.2785,0,-51.4525 0|1:6:4,1:4:164:1:41:-2.2849,0,-13.4032 0|0:24:24,0:24:961:0:0:0,-7.22472,-86.7932 dDocent_Contig_6290 14 . A G 725.413 . AB=0.480769;ABP=3.17734;AC=2;AF=0.333333;AN=6;AO=26;CIGAR=1X;DP=84;DPB=84;DPRA=0;EPP=59.4686;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1039;QR=2312;RO=58;RPL=0;RPP=59.4686;RPPR=128.956;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:31,1:31:1233:1:41:0,-5.53839,-107.152 0/1:18:12,6:12:482:6:239:-16.4654,0,-38.3134 0/1:34:15,19:15:597:19:759:-58.3947,0,-43.8344 dDocent_Contig_6291 13 . G T 171.007 . AB=0.466667;ABP=3.15506;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=48;DPB=48;DPRA=0.909091;EPP=18.2106;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=250;QR=1608;RO=41;RPL=0;RPP=18.2106;RPPR=92.0407;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:29,0:29:1129:0:0:0,-8.72987,-101.899 0/1:15:8,7:8:319:7:250:-18.3222,0,-24.562 0/0:4:4,0:4:160:0:0:0,-1.20412,-14.7838 dDocent_Contig_6292 9 . A C 47.4775 . AB=0.333333;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=4X;DP=44;DPB=44;DPRA=0.514286;EPP=9.52472;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=38;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.333333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=113;QR=1575;RO=41;RPL=0;RPP=9.52472;RPPR=92.0407;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:13:13,0:13:498:0:0:0,-3.91339,-45.1676 0|1:9:6,3:6:231:3:113:-5.96959,0,-18.4488 0|0:22:22,0:22:846:0:0:0,-6.62266,-76.456 dDocent_Contig_6294 7 . A C 358.415 . AB=0.19802;ABP=83.0108;AC=2;AF=0.333333;AN=6;AO=25;CIGAR=1X;DP=181;DPB=181;DPRA=0;EPP=57.2971;EPPR=341.76;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.24;PAIREDR=0.820513;PAO=0;PQA=0;PQR=0;PRO=0;QA=947;QR=5928;RO=156;RPL=0;RPP=57.2971;RPPR=341.76;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=156;SRP=341.76;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:56,11:56:2099:11:417:-17.7122,0,-168.98 0/1:34:25,9:25:961:9:337:-20.448,0,-76.5693 0/0:80:75,5:75:2868:5:193:0,-6.34104,-240.558 dDocent_Contig_6296 11 . T C 654.17 . AB=0.162162;ABP=39.6906;AC=4;AF=0.666667;AN=6;AO=6;CIGAR=2X8M;DP=44;DPB=44;DPRA=0;EPP=16.0391;EPPR=33.4109;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=537;RO=14;RPL=0;RPP=16.0391;RPPR=33.4109;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:13:1,9,0,3:1:40:9,0,3:341,0,122:-34.4089,-6.77475,-7.35892,-34.71,-10.0682,-38.0061,-24.6398,0,-27.937,-27.0339 0|1:24:7,11,2,3:7:265:11,2,3:427,80,120:-32.9664,0,-18.4009,-28.4825,-15.1201,-49.6008,-25.1868,-11.8238,-40.3156,-46.0041 0|1:7:6,1,0,0:6:232:1,0,0:38,0,0:-1.69006,0,-19.1397,-3.49624,-19.4407,-22.5563,-3.49624,-19.4407,-22.5563,-22.5563 dDocent_Contig_6297 30 . C T 49.7286 . AB=0.117647;ABP=67.7713;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=110;DPB=110;DPRA=1.72881;EPP=16.0391;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.6538;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.942308;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=4080;RO=104;RPL=0;RPP=16.0391;RPPR=228.843;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:45,6:45:1757:6:232:-5.89368,0,-142.897 0/0:30:30,0:30:1176:0:0:0,-9.0309,-106.122 0/0:29:29,0:29:1147:0:0:0,-8.72987,-103.512 dDocent_Contig_6298 50 . C G 77.6933 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=1X;DP=31;DPB=31;DPRA=0.137931;EPP=7.35324;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=1142;RO=29;RPL=2;RPP=7.35324;RPPR=65.983;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:566:0:0:0,-4.21442,-51.2828 1/1:2:0,2:0:0:2:80:-7.59179,-0.60206,0 0/0:15:15,0:15:576:0:0:0,-4.51545,-52.1722 dDocent_Contig_6299 12 . T C 398.367 . AB=0.293103;ABP=24.5753;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=39.9253;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=56.3529;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.529412;PAIREDR=0.878049;PAO=0;PQA=0;PQR=0;PRO=0;QA=670;QR=1515;RO=41;RPL=0;RPP=39.9253;RPPR=92.0407;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:19,7:19:699:7:279:-17.2529,0,-55.4105 0/1:16:11,5:11:399:5:191:-12.7373,0,-31.4339 0/1:16:11,5:11:417:5:200:-13.5632,0,-33.0649 dDocent_Contig_6300 8 . T A 82.7696 . AB=0.4;ABP=3.87889;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X2M1X;DP=28;DPB=28;DPRA=1.11111;EPP=11.6962;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=37;MQMR=59.9167;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=0;PAIREDR=0.958333;PAO=0;PQA=0;PQR=0;PRO=0;QA=148;QR=908;RO=24;RPL=0;RPP=11.6962;RPPR=55.1256;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:12:12,0:12:449:0:0:0,-3.61236,-40.7527 0|0:6:6,0:6:233:0:0:0,-1.80618,-21.3399 0|1:10:6,4:6:226:4:148:-9.49872,0,-17.6899 dDocent_Contig_6301 8 . T A 413.795 . AB=0.227273;ABP=59.8634;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=1X;DP=127;DPB=127;DPRA=1.12821;EPP=46.4397;EPPR=233.186;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=58.6415;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.669811;PAO=0;PQA=0;PQR=0;PRO=0;QA=772;QR=4017;RO=106;RPL=0;RPP=46.4397;RPPR=233.186;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:39,0:39:1476:0:0:0,-11.7402,-133.117 0/1:42:38,4:38:1424:4:154:-1.5902,0,-108.849 0/1:46:29,16:29:1117:16:618:-42.0238,0,-86.8965 dDocent_Contig_6302 132 . A T 50.3885 . AB=0.166667;ABP=14.5915;AC=3;AF=0.5;AN=6;AO=3;CIGAR=1X;DP=20;DPB=20;DPRA=0.928571;EPP=9.52472;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=39;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=561;RO=17;RPL=0;RPP=9.52472;RPPR=39.9253;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=39.9253;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:36:-3.4236,-0.30103,0 0/0:7:7,0:7:232:0:0:0,-2.10721,-21.2043 0/1:12:10,2:10:329:2:68:-2.52241,0,-26.3168 dDocent_Contig_6303 137 . C A 30.7858 . AB=0.2;ABP=10.8276;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X2M1X;DP=19;DPB=19;DPRA=2.22222;EPP=7.35324;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=633;RO=16;RPL=0;RPP=7.35324;RPPR=37.7539;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:6:6,0:6:238:0:0:0,-1.80618,-21.7945 0|0:3:2,0:2:75:0:0:0,-0.60206,-6.76194 0|1:10:8,2:8:320:2:77:-4.29853,0,-26.1577 dDocent_Contig_6304 21 . G A 221.756 . AB=0.727273;ABP=7.94546;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=2X;DP=25;DPB=25;DPRA=1.57143;EPP=20.3821;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=293;QR=633;RO=16;RPL=0;RPP=20.3821;RPPR=37.7539;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:7:6,0:6:233:0:0:0,-1.80618,-20.9725 0|1:11:3,8:3:117:8:293:-23.3973,0,-7.59837 0|0:7:7,0:7:283:0:0:0,-2.10721,-25.8436 dDocent_Contig_6305 15 . C T 93.1847 . AB=0.122222;ABP=114.576;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=154;DPB=154;DPRA=0;EPP=35.5824;EPPR=304.845;GTI=0;LEN=1;MEANALT=1;MQM=56.2667;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=612;QR=5622;RO=139;RPL=0;RPP=35.5824;RPPR=304.845;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=139;SRP=304.845;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:64:60,4:60:2429:4:161:0,-4.39044,-203.873 0/1:42:36,6:36:1448:6:246:-9.85141,0,-117.925 0/1:48:43,5:43:1745:5:205:-1.7221,0,-142.811 dDocent_Contig_6306 42 . C A 2800.15 . AB=0.743802;ABP=65.4805;AC=3;AF=0.5;AN=6;AO=90;CIGAR=1X;DP=121;DPB=121;DPRA=0;EPP=198.443;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3548;QR=1226;RO=31;RPL=0;RPP=198.443;RPPR=70.3259;RPR=90;RUN=1;SAF=90;SAP=198.443;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:6,27:6:233:27:1069:-86.5676,0,-11.403 0/1:41:12,29:12:471:29:1162:-92.518,0,-30.3965 0/1:47:13,34:13:522:34:1317:-104.646,0,-33.1791 dDocent_Contig_6309 8 . T C 2505.96 . AB=0.0945946;ABP=108.649;AC=3;AF=0.5;AN=6;AO=7;CIGAR=2X2M;DP=166;DPB=166;DPRA=0;EPP=18.2106;EPPR=83.3548;GTI=0;LEN=1;MEANALT=6;MQM=58;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=263;QR=1400;RO=37;RPL=0;RPP=18.2106;RPPR=83.3548;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:46:13,0,26,0,5:13:492:0,26,0,5:0,1004,0,182:-78.2807,-82.1941,-122.528,0,-40.3417,-32.515,-82.1941,-122.528,-40.3417,-122.528,-67.6032,-107.935,-25.7523,-107.935,-106.43 0|1:46:7,0,31,0,5:7:261:0,31,0,5:0,1134,0,195:-89.8642,-91.9714,-113.339,0,-21.3592,-12.0273,-91.9714,-113.339,-21.3592,-113.339,-75.9389,-97.3074,-5.32588,-97.3074,-95.8022 0|1:74:17,4,29,7,14:17:647:4,29,7,14:155,1114,263,523:-86.1674,-78.5499,-130.415,0,-40.3363,-44.3419,-69.7575,-110.091,-31.5439,-120.719,-48.4734,-88.8071,-10.2594,-80.0147,-97.3274 dDocent_Contig_6311 113 . A G 116.578 . AB=0.210526;ABP=30.668;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=52;DPB=52;DPRA=1.35714;EPP=20.3821;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=272;QR=1314;RO=44;RPL=0;RPP=20.3821;RPPR=98.5551;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=98.5551;SRR=44;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:14,6:14:436:6:202:-12.4902,0,-33.5212 0/1:18:16,2:16:470:2:70:-1.22886,0,-37.1662 0/0:14:14,0:14:408:0:0:0,-4.21442,-37.0022 dDocent_Contig_6313 166 . C T 55.1131 . AB=0.166667;ABP=26.1727;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=37;DPB=37;DPRA=3.69231;EPP=11.6962;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=151;QR=1304;RO=33;RPL=4;RPP=11.6962;RPPR=74.6689;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=74.6689;SRR=33;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:201:0:0:0,-1.50515,-18.4709 0/1:24:20,4:20:786:4:151:-6.73295,0,-63.8361 0/0:8:8,0:8:317:0:0:0,-2.40824,-28.8955 dDocent_Contig_6315 8 . T C 64.2237 . AB=0.333333;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=42;DPB=42;DPRA=0.545455;EPP=9.52472;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.923077;PAO=0;PQA=0;PQR=0;PRO=0;QA=111;QR=1500;RO=39;RPL=0;RPP=9.52472;RPPR=87.6977;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:578:0:0:0,-4.51545,-52.3625 0/1:9:6,3:6:232:3:111:-7.64422,0,-18.5397 0/0:18:18,0:18:690:0:0:0,-5.41854,-62.4302 dDocent_Contig_6317 26 . A G 219.5 . AB=0.470588;ABP=3.13803;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=41;DPB=41;DPRA=0.354167;EPP=20.3821;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=318;QR=1278;RO=33;RPL=0;RPP=20.3821;RPPR=74.6689;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:914:0:0:0,-7.22472,-82.5723 0/1:9:6,3:6:242:3:121:-8.57093,0,-19.4481 0/1:8:3,5:3:122:5:197:-15.6978,0,-8.96425 dDocent_Contig_6318 19 . T A 89.133 . AB=0.192308;ABP=24.391;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=36;DPB=36;DPRA=1.3;EPP=13.8677;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=1213;RO=31;RPL=0;RPP=13.8677;RPPR=70.3259;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:11,2:11:422:2:81:-3.77234,0,-34.4097 0/1:13:10,3:10:388:3:122:-7.4591,0,-31.3573 0/0:10:10,0:10:403:0:0:0,-3.0103,-36.6283 dDocent_Contig_6319 8 . T C 176.534 . AB=0.285714;ABP=11.386;AC=2;AF=0.333334;AN=6;AO=6;CIGAR=1X1M1X3M;DP=29;DPB=29;DPRA=0;EPP=16.0391;EPPR=39.9253;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=671;RO=17;RPL=0;RPP=16.0391;RPPR=39.9253;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:14:9,2,2,1:9:355:2,2,1:79,76,38:-3.79765,0,-28.6181,-0.277993,-22.9894,-28.8886,-3.39189,-26.1046,-26.3754,-32.305 0|1:7:2,1,4,0:2:80:1,4,0:39,155,0:-12.1301,-9.52579,-15.819,0,-3.3942,-5.39265,-12.7322,-16.1201,-6.59677,-19.3257 0|0:8:6,0,0,2:6:236:0,0,2:0,0,82:-5.37144,-7.17762,-26.5786,-7.17762,-26.5786,-26.5786,0,-19.8063,-19.8063,-19.2042 dDocent_Contig_6320 20 . C G 114.662 . AB=0.155556;ABP=49.3833;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=150;DPB=150;DPRA=0.857143;EPP=18.2106;EPPR=313.531;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=284;QR=5642;RO=143;RPL=0;RPP=18.2106;RPPR=313.531;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=143;SRP=313.531;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:38,7:38:1485:7:284:-12.3871,0,-120.351 0/0:59:59,0:59:2363:0:0:0,-17.7608,-212.824 0/0:46:46,0:46:1794:0:0:0,-13.8474,-161.664 dDocent_Contig_6321 12 . T C 567.504 . AB=0.166667;ABP=14.5915;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X2M1X2M1X2M1X;DP=46;DPB=46;DPRA=0;EPP=7.35324;EPPR=55.1256;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=937;RO=24;RPL=0;RPP=7.35324;RPPR=55.1256;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:10:7,0,3:7:268:0,3:0,119:-8.08471,-10.1919,-32.1758,0,-22.376,-21.473 1|0:12:2,2,8:2:78:2,8:80,322:-26.1267,-20.1391,-25.9463,-0.188318,0,-4.18688 0|0:24:15,0,9:15:591:0,9:0,367:-26.1705,-30.686,-79.2952,0,-49.0114,-46.3021 dDocent_Contig_6322 140 . G C 263.989 . AB=0.37037;ABP=6.95112;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=47;DPB=47;DPRA=0.675;EPP=24.725;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=401;QR=1486;RO=37;RPL=0;RPP=24.725;RPPR=83.3548;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=83.3548;SRR=37;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:800:0:0:0,-6.0206,-72.3191 0/1:12:5,7:5:199:7:283:-22.2306,0,-14.6762 0/1:15:12,3:12:487:3:118:-6.48706,0,-39.6656 dDocent_Contig_6327 73 . T G 326.125 . AB=0.571429;ABP=3.94093;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=38;DPB=38;DPRA=2.47059;EPP=29.068;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=439;QR=952;RO=26;RPL=12;RPP=29.068;RPPR=59.4686;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:9,12:9:320:12:439:-33.5319,0,-22.8178 0/0:15:15,0:15:558:0:0:0,-4.51545,-50.5586 0/0:2:2,0:2:74:0:0:0,-0.60206,-7.02588 dDocent_Contig_6328 32 . A G 1162.85 . AB=0.255102;ABP=105.114;AC=3;AF=0.5;AN=6;AO=50;CIGAR=1X;DP=196;DPB=196;DPRA=0;EPP=111.584;EPPR=320.045;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1978;QR=5689;RO=146;RPL=0;RPP=111.584;RPPR=320.045;RPR=50;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=146;SRP=320.045;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:33,19:33:1282:19:761:-53.1591,0,-100.001 0/1:75:57,18:57:2233:18:718:-42.3709,0,-178.588 0/1:69:56,13:56:2174:13:499:-24.4715,0,-175.076 dDocent_Contig_6329 13 . T A 860.255 . AB=0.034749;ABP=489.965;AC=0;AF=0;AN=6;AO=9;CIGAR=2X;DP=277;DPB=277;DPRA=0;EPP=3.25157;EPPR=14.3727;GTI=0;LEN=1;MEANALT=5;MQM=28;MQMR=37.7267;NS=3;NUMALT=3;ODDS=2.77556e-17;PAIRED=0;PAIREDR=0.168605;PAO=0;PQA=0;PQR=0;PRO=0;QA=346;QR=6599;RO=172;RPL=0;RPP=22.5536;RPPR=376.504;RPR=9;RUN=1;SAF=5;SAP=3.25157;SAR=4;SRF=101;SRP=14.3727;SRR=71;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:112:68,7,24,6:68:2598:7,24,6:267,791,235:-30.7897,-36.0407,-217.411,0,-168.236,-176.23,-32.0123,-200.281,-164.217,-213.696 0|0:147:95,2,34,12:95:3650:2,34,12:79,1156,376:-45.3155,-69.5292,-301.234,0,-227.919,-222.068,-44.861,-272.79,-203.257,-273.562 0|0:18:9,0,7,2:9:351:0,7,2:0,216,77:-13.637,-16.3463,-45.2358,0,-28.8568,-26.7496,-10.0302,-38.9355,-22.5617,-38.3335 dDocent_Contig_6330 7 . A G 241.916 . AB=0.416667;ABP=4.45795;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=29;DPB=29;DPRA=2.4;EPP=24.725;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=367;QR=733;RO=19;RPL=0;RPP=24.725;RPPR=44.2683;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:6,4:6:234:4:139:-9.84046,0,-18.4208 0/1:14:8,6:8:305:6:228:-16.6697,0,-23.5959 0/0:5:5,0:5:194:0:0:0,-1.50515,-17.8328 dDocent_Contig_6331 82 . C T 64.4561 . AB=0.178571;ABP=28.1373;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=37;DPB=37;DPRA=6.22222;EPP=13.8677;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=175;QR=1134;RO=32;RPL=5;RPP=13.8677;RPPR=72.4974;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:281:0:0:0,-2.40824,-25.6309 0/1:28:23,5:23:818:5:175:-7.66451,0,-65.5138 0/0:1:1,0:1:35:0:0:0,-0.30103,-3.49863 dDocent_Contig_6332 15 . A G 106.37 . AB=0.193548;ABP=28.2974;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=38;DPB=38;DPRA=2.21429;EPP=16.0391;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=1289;RO=32;RPL=0;RPP=16.0391;RPPR=72.4974;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:285:2:82:-5.07041,0,-23.3151 0/1:22:18,4:18:730:4:157:-7.88523,0,-59.4022 0/0:7:7,0:7:274:0:0:0,-2.10721,-25.025 dDocent_Contig_6333 98 . N C 49.8212 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=4X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=10;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=151;QR=0;RO=0;RPL=5;RPP=13.8677;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:3:0,3:0:0:3:98:-2.79384,-0.90309,0 1|1:2:0,2:0:0:2:53:-1.88083,-0.60206,0 dDocent_Contig_6334 12 . G A 178.464 . AB=0.181818;ABP=12.6832;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1M1X5M1X;DP=29;DPB=28.5;DPRA=0;EPP=3.0103;EPPR=24.5973;GTI=0;LEN=1;MEANALT=3;MQM=48;MQMR=56.7059;NS=3;NUMALT=3;ODDS=3.46945e-18;PAIRED=0;PAIREDR=0.764706;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=669;RO=17;RPL=0;RPP=7.35324;RPPR=39.9253;RPR=2;RUN=1;SAF=1;SAP=3.0103;SAR=1;SRF=15;SRP=24.5973;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:11:7,1,2,0:7:271:1,2,0:39,79,0:-4.30165,-3.20125,-25.1643,0,-19.0603,-21.6647,-6.40886,-25.4654,-22.2668,-28.6716 0|0:14:10,2,0,0:10:398:2,0,0:80,0,0:-3.58482,0,-30.613,-6.59512,-31.2151,-37.8077,-6.59512,-31.2151,-37.8077,-37.8077 0|0:4:0,1,0,3:0:0:1,0,3:41,0,120:-13.6708,-10.2842,-9.98319,-13.6708,-10.2842,-13.6708,-3.79354,0,-3.79354,-2.89045 dDocent_Contig_6335 22 . A C 140.104 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1M1D1M1X1M1X3M2X2M1X1M1I1X2M1X3M;DP=33;DPB=32.5909;DPRA=0;EPP=7.35324;EPPR=42.0968;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=695;RO=18;RPL=0;RPP=7.35324;RPPR=42.0968;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:15:10,0,2,0,2:10:387:0,2,0,2:0,77,0,79:-3.49447,-6.50477,-38.2927,-0.312785,-32.0948,-31.4927,-6.50477,-38.2927,-32.0948,-38.2927,0,-31.7906,-25.5928,-31.7906,-31.1886 0|0:11:7,0,0,2,0:7:268:0,0,2,0:0,0,80,0:-4.49289,-6.6001,-28.5855,-6.6001,-28.5855,-28.5855,0,-21.9921,-21.9921,-21.3901,-6.6001,-28.5855,-28.5855,-21.9921,-28.5855 1|0:7:1,2,0,0,2:1:40:2,0,0,2:80,0,0,81:-9.67321,-3.38573,-6.07776,-9.97424,-6.67982,-13.2689,-9.97424,-6.67982,-13.2689,-13.2689,-3.29426,0,-6.58884,-6.58884,-5.98678 dDocent_Contig_6336 12 . G A 145.061 . AB=0.114754;ABP=81.6461;AC=0;AF=0;AN=6;AO=7;CIGAR=1M2X5M;DP=63;DPB=61.75;DPRA=15.25;EPP=18.2106;EPPR=74.6689;GTI=0;LEN=1;MEANALT=5;MQM=21;MQMR=55.1818;NS=3;NUMALT=6;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=147;QR=1272;RO=33;RPL=0;RPP=18.2106;RPPR=74.6689;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:27:12,2,4,5,2,0,2:12:451:2,4,5,2,0,2:79,161,105,42,0,80:-3.00767,-1.4227,-37.5541,-4.6267,-36.1567,-40.1328,-0.0340596,-31.5821,-34.7756,-35.2582,-3.98453,-35.5253,-38.7103,-34.1363,-40.1055,-6.62002,-38.1562,-41.3369,-36.7634,-40.7076,-43.3389,0,-31.5555,-34.7386,-30.1636,-34.1079,-36.7393,-36.1372 0|0:34:21,0,4,2,0,4,2:21:821:0,4,2,0,4,2:0,159,42,0,154,75:-6.37838,-12.7,-78.227,-10.7369,-76.2244,-75.0203,-10.0737,-75.5972,-73.5982,-74.9952,-12.7,-78.227,-76.2244,-75.5972,-78.227,0,-65.5791,-63.5803,-62.9502,-65.5791,-64.375,-7.73547,-73.2743,-71.2742,-70.6452,-73.2743,-60.6261,-72.6723 0|0:2:0,0,0,0,0,2,0:0:0:0,0,0,0,2,0:0,0,0,0,77,0:-7.30883,-7.30883,-7.30883,-7.30883,-7.30883,-7.30883,-7.30883,-7.30883,-7.30883,-7.30883,-7.30883,-7.30883,-7.30883,-7.30883,-7.30883,-0.60206,-0.60206,-0.60206,-0.60206,-0.60206,0,-7.30883,-7.30883,-7.30883,-7.30883,-7.30883,-0.60206,-7.30883 dDocent_Contig_6338 86 . C T 108.027 . AB=0.304348;ABP=10.6577;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=41;DPB=41;DPRA=2.55556;EPP=18.2106;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.857143;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=1168;RO=34;RPL=4;RPP=3.32051;RPPR=3.0103;RPR=3;RUN=1;SAF=4;SAP=3.32051;SAR=3;SRF=17;SRP=3.0103;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:16,7:16:552:7:204:-11.7221,0,-43.0829 0/0:16:16,0:16:547:0:0:0,-4.81648,-49.5546 0/0:2:2,0:2:69:0:0:0,-0.60206,-6.55266 dDocent_Contig_6339 137 . A T 291.913 . AB=0.545455;ABP=3.40511;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=61;DPB=61;DPRA=0;EPP=31.2394;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=450;QR=1632;RO=48;RPL=0;RPP=31.2394;RPPR=107.241;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=107.241;SRR=48;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:38,1:38:1281:1:34:0,-8.34126,-112.17 0/1:10:7,3:7:245:3:114:-7.62168,0,-19.3804 0/1:12:3,9:3:106:9:302:-23.8884,0,-6.27594 dDocent_Contig_6340 43 . A T 31.5286 . AB=0.166667;ABP=14.5915;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X3M1X;DP=39;DPB=39;DPRA=0.888889;EPP=7.35324;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1453;RO=37;RPL=0;RPP=7.35324;RPPR=83.3548;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:12:10,2:10:395:2:81:-4.07337,0,-32.295 0|0:13:13,0:13:509:0:0:0,-3.91339,-46.1569 0|0:14:14,0:14:549:0:0:0,-4.21442,-49.7496 dDocent_Contig_6341 39 . C T 78.633 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=1X;DP=19;DPB=19;DPRA=0.235294;EPP=7.35324;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=670;RO=17;RPL=0;RPP=7.35324;RPPR=39.9253;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:310:0:0:0,-2.40824,-28.259 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 0/0:9:9,0:9:360:0:0:0,-2.70927,-32.762 dDocent_Contig_6342 36 . G A 308.878 . AB=0.263158;ABP=30.7823;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=72;DPB=72;DPRA=0;EPP=37.7539;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=593;QR=2217;RO=56;RPL=0;RPP=37.7539;RPPR=124.613;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:14,1:14:548:1:41:0,-0.420883,-45.5584 0/1:26:20,6:20:803:6:203:-10.7701,0,-64.7621 0/1:31:22,9:22:866:9:349:-22.4342,0,-68.9195 dDocent_Contig_6343 23 . T A 87.4355 . AB=0.315789;ABP=8.61041;AC=1;AF=0.166667;AN=6;AO=45;CIGAR=1X;DP=406;DPB=406;DPRA=0;EPP=3.05855;EPPR=4.75837;GTI=0;LEN=1;MEANALT=1.33333;MQM=27.3333;MQMR=30.8552;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.0445682;PAO=0;PQA=0;PQR=0;PRO=0;QA=1713;QR=13782;RO=359;RPL=45;RPP=100.727;RPPR=649.788;RPR=0;RUN=1;SAF=23;SAP=3.05855;SAR=22;SRF=187;SRP=4.37125;SRR=172;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:128:115,13:115:4408:13:510:0,-8.76635,-257.681 0/0:259:231,26:231:8873:26:971:0,-13.937,-519.177 0/1:19:13,6:13:501:6:232:-9.9654,0,-33.8209 dDocent_Contig_6344 106 . N G 51.8678 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=2X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=43;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=55;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:55:-5.18245,-0.60206,0 dDocent_Contig_6345 57 . C T 399.025 . AB=0.405405;ABP=5.88603;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=40;DPB=40;DPRA=6.16667;EPP=35.5824;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=585;QR=988;RO=25;RPL=15;RPP=35.5824;RPPR=57.2971;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3,0:3:107:0:0:0,-0.90309,-9.97976 0/1:18:14,4:14:558:4:147:-8.16791,0,-45.1458 0/1:19:8,11:8:323:11:438:-34.0526,0,-23.719 dDocent_Contig_6347 13 . A T 1273.82 . AB=0.608696;ABP=10.0912;AC=3;AF=0.5;AN=6;AO=42;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=94.2121;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1676;QR=1080;RO=27;RPL=0;RPP=94.2121;RPPR=61.6401;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:18,10:18:724:10:397:-27.6597,0,-57.0566 0/1:28:6,22:6:233:22:876:-70.7217,0,-12.9083 0/1:13:3,10:3:123:10:403:-32.7168,0,-7.5514 dDocent_Contig_6349 168 . C T 157.66 . AB=0.242424;ABP=22.0271;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X;DP=33;DPB=33;DPRA=0;EPP=20.3821;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=314;QR=946;RO=25;RPL=8;RPP=20.3821;RPPR=57.2971;RPR=0;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:9,3:9:345:3:109:-6.55063,0,-27.7896 0/1:5:4,1:4:159:1:41:-2.58942,0,-13.1868 0/1:16:12,4:12:442:4:164:-10.3334,0,-35.2887 dDocent_Contig_6350 178 . G T 47.3691 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=17;DPB=17;DPRA=0.615385;EPP=7.35324;EPPR=33.4109;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=554;RO=14;RPL=2;RPP=7.35324;RPPR=33.4109;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=33.4109;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:279:0:0:0,-2.10721,-25.4815 0/0:6:6,0:6:240:0:0:0,-1.80618,-21.976 0/1:4:1,2:1:35:2:76:-5.93808,0,-2.23572 dDocent_Contig_6351 13 . T C 86.5134 . AB=0.0434783;ABP=169.553;AC=0;AF=0;AN=6;AO=4;CIGAR=1X2M1X2M2X1M1X2M1X;DP=153;DPB=153;DPRA=0.754098;EPP=11.6962;EPPR=289.645;GTI=0;LEN=1;MEANALT=3;MQM=44;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=5141;RO=132;RPL=0;RPP=11.6962;RPPR=289.645;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=132;SRP=289.645;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:57:47,1,7,0:47:1818:1,7,0:40,283,0:-9.19022,-20.1724,-169.185,0,-146.151,-147.212,-23.3386,-169.486,-149.319,-172.654 0|0:35:27,3,2,3:27:1050:3,2,3:117,80,119:-1.67183,-0.502206,-85.8784,-3.20638,-80.1907,-88.8923,0,-76.9848,-79.6976,-85.3854 0|0:61:58,0,1,0:58:2273:0,1,0:0,37,0:0,-17.4597,-204.435,-14.411,-201.409,-201.108,-17.4597,-204.435,-201.409,-204.435 dDocent_Contig_6352 107 . N A 78.6776 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=5.29832;PAIRED=0.333333;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=90;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:90:-7.8656,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_6353 13 . C T 149.911 . AB=0.166667;ABP=37.7539;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=2X6M2X2M1X;DP=45;DPB=45.0769;DPRA=0;EPP=16.0391;EPPR=57.2971;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=977;RO=25;RPL=0;RPP=16.0391;RPPR=57.2971;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:20:11,1,3,3,2:11:437:1,3,3,2:6,117,115,78:-6.32662,-9.65649,-45.3392,0,-36.0236,-35.12,-0.1826,-36.2042,-26.5829,-35.3005,-3.21499,-39.2295,-29.6097,-29.7903,-38.6281 0|1:16:8,4,0,3,0:8:303:4,0,3,0:24,0,117,0:-7.31914,-9.81612,-33.4502,-9.72738,-34.6543,-34.6508,0,-25.033,-25.0109,-24.1078,-9.72738,-34.6543,-34.6508,-25.0109,-34.6508 0|0:9:6,0,0,0,2:6:237:0,0,0,2:0,0,0,81:-4.976,-6.78218,-26.3126,-6.78218,-26.3126,-26.3126,-6.78218,-26.3126,-26.3126,-26.3126,0,-19.6267,-19.6267,-19.6267,-19.0246 dDocent_Contig_6354 15 . T C 379.61 . AB=0.52;ABP=3.09716;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=41;DPB=41;DPRA=0.78125;EPP=31.2394;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=523;QR=1095;RO=28;RPL=0;RPP=31.2394;RPPR=63.8115;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:615:0:0:0,-4.81648,-55.6728 0/1:10:8,2:8:320:2:77:-4.29884,0,-26.1577 0/1:15:4,11:4:160:11:446:-35.9807,0,-10.268 dDocent_Contig_6355 11 . G C 86.7069 . AB=0.266667;ABP=10.1038;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=39;DPB=39;DPRA=0.3125;EPP=11.6962;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=1380;RO=35;RPL=0;RPP=11.6962;RPPR=79.0118;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:954:0:0:0,-7.22472,-86.1652 0/1:7:6,1:6:241:1:40:-1.88847,0,-19.9591 0/1:8:5,3:5:185:3:123:-9.05655,0,-14.5987 dDocent_Contig_6356 22 . A G 303.203 . AB=0.4;ABP=5.61607;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=2X;DP=98;DPB=98;DPRA=0.882353;EPP=29.068;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=447;QR=3412;RO=86;RPL=0;RPP=29.068;RPPR=189.757;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:40:40,0:40:1583:0:0:0,-12.0412,-142.709 0|0:28:28,0:28:1112:0:0:0,-8.42884,-100.368 0|1:30:18,12:18:717:12:447:-31.5421,0,-55.8265 dDocent_Contig_6357 72 . A T 81.3607 . AB=0.25;ABP=11.6962;AC=1;AF=0.25;AN=4;AO=4;CIGAR=1X;DP=32;DPB=32;DPRA=1;EPP=11.6962;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=152;QR=1023;RO=28;RPL=2;RPP=3.0103;RPPR=3.0103;RPR=2;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=14;SRP=3.0103;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:12,4:12:439:4:152:-9.23298,0,-35.0305 0/0:16:16,0:16:584:0:0:0,-4.81648,-52.8798 ./.:.:.:.:.:.:.:. dDocent_Contig_6358 13 . G A 43.044 . AB=0.116279;ABP=58.0041;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=120;DPB=120;DPRA=2.22727;EPP=16.0391;EPPR=250.558;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.333333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=4465;RO=114;RPL=0;RPP=16.0391;RPPR=250.558;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:891:0:0:0,-6.62266,-80.4968 0/0:55:54,1:54:2097:1:38:0,-12.7594,-185.124 0/1:43:38,5:38:1477:5:201:-5.52623,0,-120.227 dDocent_Contig_6359 26 . G A 75.1495 . AB=0.190476;ABP=20.4855;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=91;DPB=91;DPRA=0.6;EPP=11.6962;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.25;PAIREDR=0.954023;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=3425;RO=87;RPL=0;RPP=11.6962;RPPR=191.928;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:35:35,0:35:1380:0:0:0,-10.536,-124.452 0/0:35:35,0:35:1366:0:0:0,-10.536,-123.2 0/1:21:17,4:17:679:4:163:-8.7368,0,-55.1125 dDocent_Contig_6360 22 . A G 65.1151 . AB=0.181818;ABP=22.3561;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=30;DPB=30;DPRA=1.375;EPP=11.6962;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.846154;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=1026;RO=26;RPL=0;RPP=11.6962;RPPR=59.4686;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:11,3:11:438:3:122:-7.15807,0,-35.5606 0/1:8:7,1:7:270:1:40:-1.58744,0,-22.2547 0/0:8:8,0:8:318:0:0:0,-2.40824,-28.9868 dDocent_Contig_6361 27 . T C 629.587 . AB=0.173913;ABP=24.253;AC=3;AF=0.5;AN=6;AO=4;CIGAR=2X1M1X;DP=54;DPB=54;DPRA=0;EPP=11.6962;EPPR=52.9542;GTI=0;LEN=1;MEANALT=2.5;MQM=24;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=900;RO=23;RPL=0;RPP=11.6962;RPPR=52.9542;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:31:10,17,0,4:10:387:17,0,4:674,0,164:-51.3697,0,-26.6495,-54.38,-31.767,-86.1614,-40.8398,-18.2242,-72.6223,-71.4182 0|1:19:13,4,2,0:13:513:4,2,0:158,79,0:-8.18414,0,-41.1399,-8.44415,-38.6686,-50.0722,-12.0975,-42.3441,-50.6742,-54.3547 1|0:4:0,1,2,1:0:0:1,2,1:40,79,41:-7.02458,-3.97796,-3.67693,-3.40386,-0.395575,-2.8018,-3.60875,-0.536988,0,-3.30772 dDocent_Contig_6362 16 . T G 3219.37 . AB=0.0560748;ABP=186.165;AC=4;AF=0.666666;AN=6;AO=6;CIGAR=1X5M;DP=185;DPB=185;DPRA=0;EPP=16.0391;EPPR=76.8404;GTI=0;LEN=1;MEANALT=6.5;MQM=60;MQMR=60;NS=3;NUMALT=6;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=1351;RO=34;RPL=0;RPP=16.0391;RPPR=76.8404;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:54:24,0,11,5,4,4,4:24:954:0,11,5,4,4,4:0,436,197,162,156,153:-28.6647,-35.8894,-114.437,0,-78.548,-75.2367,-19.6823,-98.2296,-62.341,-96.7244,-22.5296,-101.078,-65.1888,-84.8705,-99.8736,-23.067,-101.614,-65.7255,-85.407,-88.255,-100.41,-23.3387,-101.885,-65.9968,-85.6782,-88.5262,-89.0626,-100.681 1|1:78:3,0,21,45,3,0,6:3:119:0,21,45,3,0,6:0,817,1798,118,0,243:-204.53,-205.433,-215.229,-138.298,-148.094,-141.772,-57.3354,-67.1316,0,-53.5853,-195.727,-205.523,-138.387,-57.4247,-204.619,-205.433,-215.229,-148.094,-67.1316,-205.523,-215.229,-185.395,-195.191,-128.056,-47.0917,-185.485,-195.191,-193.385 0|1:53:7,3,4,29,5,2,2:7:278:3,4,29,5,2,2:115,162,1149,201,82,82:-92.4585,-85.1283,-107.112,-81.2067,-94.6563,-102.89,0,-13.4504,-9.52696,-14.1568,-78.0013,-91.4509,-87.5293,-6.32179,-99.3833,-87.797,-101.247,-97.3251,-16.1174,-94.1197,-110.082,-87.797,-101.247,-97.3251,-16.1174,-94.1197,-103.915,-110.082 dDocent_Contig_6365 23 . T A 58.4483 . AB=0.112903;ABP=83.705;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=76;DPB=76;DPRA=2.21429;EPP=18.2106;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=2774;RO=69;RPL=0;RPP=18.2106;RPPR=152.842;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:554:0:0:0,-4.21442,-50.2035 0/1:25:23,2:23:931:2:81:-0.159984,0,-76.5668 0/1:37:32,5:32:1289:5:198:-7.05839,0,-105.137 dDocent_Contig_6366 84 . C A 870.756 . AB=0.537313;ABP=3.82055;AC=3;AF=0.5;AN=6;AO=36;CIGAR=1X1M1X;DP=67;DPB=67;DPRA=0;EPP=81.1833;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1216;QR=1057;RO=31;RPL=36;RPP=81.1833;RPPR=70.3259;RPR=0;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:28:3,25:3:100:25:841:-67.5703,0,-0.90153 0|1:21:17,4:17:579:4:138:-6.43882,0,-46.1112 0|1:18:11,7:11:378:7:237:-16.2428,0,-28.933 dDocent_Contig_6367 30 . C T 174.475 . AB=0.174419;ABP=82.1933;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=133;DPB=133;DPRA=0;EPP=42.0968;EPPR=252.73;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.991304;PAO=0;PQA=0;PQR=0;PRO=0;QA=600;QR=4498;RO=115;RPL=0;RPP=42.0968;RPPR=252.73;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=115;SRP=252.73;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:34,9:34:1308:9:288:-13.286,0,-105.046 0/1:43:37,6:37:1454:6:212:-6.48025,0,-118.176 0/0:47:44,3:44:1736:3:100:0,-4.82041,-147.144 dDocent_Contig_6368 8 . T C 248.617 . AB=0.473684;ABP=3.12459;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=39;DPB=39;DPRA=1.9;EPP=22.5536;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=346;QR=1144;RO=30;RPL=0;RPP=22.5536;RPPR=68.1545;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:10,9:10:378:9:346:-25.7796,0,-28.6531 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 0/0:19:19,0:19:727:0:0:0,-5.71957,-65.7608 dDocent_Contig_6369 15 . T A 152.575 . AB=0.210526;ABP=30.668;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X1M1X;DP=55;DPB=55;DPRA=0;EPP=22.5536;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=355;QR=1824;RO=46;RPL=0;RPP=22.5536;RPPR=102.898;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:17:16,1:16:644:1:41:0,-1.02294,-54.2005 0|1:18:15,3:15:589:3:117:-5.49137,0,-47.9311 0|1:20:15,5:15:591:5:197:-12.0843,0,-47.5084 dDocent_Contig_6370 10 . A G 63.4792 . AB=0.16;ABP=28.1125;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=2X;DP=34;DPB=34;DPRA=1.38889;EPP=11.6962;EPPR=65.983;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=57.5172;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.862069;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=1160;RO=29;RPL=0;RPP=11.6962;RPPR=65.983;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:13:12,1:12:477:1:41:-0.181177,0,-39.3665 0|0:9:9,0:9:362:0:0:0,-2.70927,-32.9442 0|1:12:8,3:8:321:3:121:-7.56106,0,-24.844 dDocent_Contig_6371 45 . C A 43.567 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=34;DPB=34;DPRA=0.518519;EPP=7.35324;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1217;RO=32;RPL=0;RPP=7.35324;RPPR=72.4974;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:501:0:0:0,-3.91339,-45.4298 0/0:14:14,0:14:518:0:0:0,-4.21442,-46.9459 0/1:7:5,2:5:198:2:81:-5.57852,0,-16.0898 dDocent_Contig_6372 8 . G A 205.013 . AB=0.277778;ABP=18.4519;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=66;DPB=66;DPRA=0;EPP=29.068;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=424;QR=2080;RO=54;RPL=0;RPP=29.068;RPPR=120.27;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:11,6:11:421:6:211:-14.2142,0,-33.1255 0/1:19:15,4:15:581:4:155:-8.60587,0,-46.9133 0/0:30:28,2:28:1078:2:58:0,-3.5242,-91.8195 dDocent_Contig_6373 98 . N C 105.425 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:114:-10.5415,-1.20412,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_6374 109 . G A 235.478 . AB=0.423077;ABP=4.34659;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=38;DPB=38;DPRA=1.08333;EPP=26.8965;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=367;QR=912;RO=27;RPL=0;RPP=26.8965;RPPR=61.6401;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:411:0:0:0,-3.61236,-37.3193 0/1:11:8,3:8:266:3:104:-6.39176,0,-20.954 0/1:15:7,8:7:235:8:263:-19.4748,0,-16.9632 dDocent_Contig_6375 8 . G T 132.856 . AB=0.26087;ABP=14.4341;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=92;DPB=92;DPRA=0.666667;EPP=16.0391;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=3211;RO=86;RPL=0;RPP=16.0391;RPPR=189.757;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:38,0:38:1403:0:0:0,-11.4391,-126.554 0/0:31:31,0:31:1156:0:0:0,-9.33193,-104.34 0/1:23:17,6:17:652:6:234:-14.5074,0,-52.0929 dDocent_Contig_6376 16 . T C 148.15 . AB=0.210526;ABP=30.668;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X;DP=38;DPB=38;DPRA=0;EPP=20.3821;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=320;QR=1205;RO=30;RPL=0;RPP=20.3821;RPPR=68.1545;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:13,2:13:517:2:81:-3.17028,0,-42.3599 0/1:9:6,3:6:242:3:120:-8.47842,0,-19.4483 0/1:14:11,3:11:446:3:119:-6.88059,0,-36.2816 dDocent_Contig_6377 15 . G A 421.683 . AB=0.224719;ABP=61.5913;AC=2;AF=0.333333;AN=6;AO=21;CIGAR=1X2M1X;DP=121;DPB=121;DPRA=0;EPP=48.6112;EPPR=217.986;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=822;QR=3893;RO=99;RPL=0;RPP=48.6112;RPPR=217.986;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:32:30,1:30:1168:1:38:0,-5.77452,-101.741 0|1:51:46,5:46:1815:5:196:-2.66239,0,-148.225 0|1:38:23,15:23:910:15:588:-41.8168,0,-70.7704 dDocent_Contig_6378 39 . T C 310.719 . AB=0.363636;ABP=8.34028;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=33;DPB=33;DPRA=0;EPP=29.068;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.916667;PAIREDR=0.809524;PAO=0;PQA=0;PQR=0;PRO=0;QA=484;QR=837;RO=21;RPL=0;RPP=29.068;RPPR=48.6112;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:9,3:9:355:3:119:-7.48265,0,-28.6951 0/1:17:11,6:11:442:6:242:-17.0394,0,-35.0179 0/1:4:1,3:1:40:3:123:-10.2607,0,-2.79156 dDocent_Contig_6379 19 . G C 835.973 . AB=0.608696;ABP=7.73089;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=63.8115;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1112;QR=731;RO=18;RPL=0;RPP=63.8115;RPPR=42.0968;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:5,5:5:202:5:198:-15.1875,0,-15.5518 0/1:17:7,10:7:283:10:398:-31.0622,0,-20.7261 0/1:19:6,13:6:246:13:516:-41.0643,0,-16.8005 dDocent_Contig_6380 58 . T A 55.5165 . AB=0.153846;ABP=30.0702;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=90;DPB=90;DPRA=0.8125;EPP=11.6962;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=3335;RO=86;RPL=4;RPP=11.6962;RPPR=189.757;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1214:0:0:0,-9.33193,-109.543 0/1:26:22,4:22:843:4:158:-6.77349,0,-68.3531 0/0:33:33,0:33:1278:0:0:0,-9.93399,-115.281 dDocent_Contig_6381 151 . G A 205.046 . AB=0.375;ABP=6.26751;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=43;DPB=43;DPRA=0;EPP=24.725;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=363;QR=1125;RO=33;RPL=0;RPP=24.725;RPPR=74.6689;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=74.6689;SRR=33;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:4,5:4:138:5:183:-14.1175,0,-10.0506 0/1:15:11,4:11:377:4:143:-8.70584,0,-29.7425 0/0:19:18,1:18:610:1:37:0,-2.02174,-51.519 dDocent_Contig_6382 26 . A G 856.875 . AB=0.484848;ABP=3.0761;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1X;DP=57;DPB=57;DPRA=1.69231;EPP=61.6401;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1065;QR=1185;RO=30;RPL=0;RPP=61.6401;RPPR=68.1545;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:11:0,11:0:0:11:436:-39.5954,-3.31133,0 0/1:33:17,16:17:662:16:629:-47.0129,0,-49.9775 0/0:13:13,0:13:523:0:0:0,-3.91339,-47.4166 dDocent_Contig_6383 98 . N A 66.5172 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_6384 12 . T C 100.991 . AB=0.176471;ABP=33.9218;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=39;DPB=39;DPRA=3.4;EPP=16.0391;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=1309;RO=33;RPL=0;RPP=16.0391;RPPR=74.6689;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:16,3:16:625:3:120:-5.46833,0,-50.8644 0/0:5:5,0:5:199:0:0:0,-1.50515,-18.2881 0/1:15:12,3:12:485:3:123:-6.94934,0,-39.486 dDocent_Contig_6385 8 . G A 417.107 . AB=0.346154;ABP=13.7006;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X;DP=52;DPB=52;DPRA=0;EPP=42.0968;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.833333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=667;QR=1285;RO=34;RPL=0;RPP=42.0968;RPPR=76.8404;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:8,4:8:309:4:143:-9.60712,0,-24.5606 0/1:27:17,10:17:642:10:382:-26.6072,0,-49.9875 0/1:13:9,4:9:334:4:142:-9.21305,0,-26.4972 dDocent_Contig_6386 11 . C T 169.772 . AB=0.3;ABP=13.4334;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X3M2X;DP=34;DPB=34;DPRA=0;EPP=22.5536;EPPR=42.0968;GTI=0;LEN=1;MEANALT=2;MQM=28.6667;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=354;QR=717;RO=18;RPL=0;RPP=22.5536;RPPR=42.0968;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:12:6,5,1:6:243:5,1:193,40:-4.22404,0,-18.5366,-2.69716,-16.7473,-22.5606 0|0:4:3,0,1:3:120:0,1:0,38:-2.59315,-3.49624,-13.3964,0,-10.2848,-9.98378 0|0:18:9,4,5:9:354:4,5:161,201:-13.867,-4.1019,-32.0124,0,-16.6491,-27.6239 dDocent_Contig_6387 69 . G T 39.2242 . AB=0.176471;ABP=18.4661;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=2X;DP=34;DPB=34;DPRA=2;EPP=9.52472;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=110;QR=1155;RO=31;RPL=3;RPP=9.52472;RPPR=70.3259;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:14:14,0:14:531:0:0:0,-4.21442,-48.1342 0|0:3:3,0:3:115:0:0:0,-0.90309,-10.725 0|1:17:14,3:14:509:3:110:-5.14349,0,-41.0316 dDocent_Contig_6390 43 . G A 133.897 . AB=0.461538;ABP=3.17734;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=35;DPB=35;DPRA=1.18182;EPP=16.0391;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=1170;RO=29;RPL=0;RPP=16.0391;RPPR=65.983;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:7,6:7:277:6:199:-14.3105,0,-21.3867 0/0:9:9,0:9:366:0:0:0,-2.70927,-33.3052 0/0:13:13,0:13:527:0:0:0,-3.91339,-47.7773 dDocent_Contig_6391 77 . A T 96.9303 . AB=0.294118;ABP=9.26925;AC=1;AF=0.25;AN=4;AO=5;CIGAR=1X;DP=37;DPB=37;DPRA=0.85;EPP=13.8677;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=173;QR=1151;RO=32;RPL=2;RPP=3.44459;RPPR=3.0103;RPR=3;RUN=1;SAF=2;SAP=3.44459;SAR=3;SRF=16;SRP=3.0103;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:12,5:12:433:5:173:-10.7899,0,-34.1916 0/0:20:20,0:20:718:0:0:0,-6.0206,-64.9443 ./.:.:.:.:.:.:.:. dDocent_Contig_6392 8 . G T 60.4413 . AB=0.275862;ABP=15.6647;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=63;DPB=63;DPRA=1.75;EPP=24.725;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=22;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=387;QR=1988;RO=53;RPL=0;RPP=24.725;RPPR=118.098;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:18,2:18:680:2:76:0,-1.86146,-57.3706 0/0:14:14,0:14:512:0:0:0,-4.21442,-46.4168 0/1:29:21,8:21:796:8:311:-7.2659,0,-63.2348 dDocent_Contig_6393 108 . C T 65.4058 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=1X;DP=29;DPB=29;DPRA=0.148148;EPP=7.35324;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=67;QR=832;RO=27;RPL=0;RPP=7.35324;RPPR=61.6401;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:471:0:0:0,-4.81648,-42.674 1/1:2:0,2:0:0:2:67:-6.36304,-0.60206,0 0/0:11:11,0:11:361:0:0:0,-3.31133,-32.8097 dDocent_Contig_6394 11 . C T 370.196 . AB=0.375;ABP=8.43898;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=37.7539;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.903846;PAO=0;PQA=0;PQR=0;PRO=0;QA=602;QR=2048;RO=52;RPL=0;RPP=37.7539;RPPR=115.927;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:19,8:19:756:8:302:-19.4081,0,-60.2365 0/0:28:27,1:27:1051:1:39:0,-4.53228,-90.9904 0/1:13:6,7:6:241:7:261:-19.9303,0,-18.1533 dDocent_Contig_6395 35 . G A 120.463 . AB=0.166667;ABP=49.335;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=144;DPB=144;DPRA=1;EPP=20.3821;EPPR=270.68;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.955556;PAO=0;PQA=0;PQR=0;PRO=0;QA=304;QR=5210;RO=135;RPL=0;RPP=20.3821;RPPR=296.159;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=132;SRP=270.68;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:44:44,0:44:1720:0:0:0,-13.2453,-155.037 0/0:52:51,0:51:1961:0:0:0,-15.3525,-176.616 0/1:48:40,8:40:1529:8:304:-13.2681,0,-123.391 dDocent_Contig_6396 63 . A T 232.497 . AB=0.533333;ABP=3.15506;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=60;DPB=60;DPRA=0.666667;EPP=20.3821;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.903846;PAO=0;PQA=0;PQR=0;PRO=0;QA=318;QR=1998;RO=52;RPL=8;RPP=20.3821;RPPR=115.927;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:1004:0:0:0,-7.82678,-90.6594 0/0:19:19,0:19:719:0:0:0,-5.71957,-65.0298 0/1:15:7,8:7:275:8:318:-24.4715,0,-20.5991 dDocent_Contig_6397 87 . C T 248.061 . AB=0.285714;ABP=11.386;AC=3;AF=0.5;AN=6;AO=6;CIGAR=1X2M;DP=49;DPB=49;DPRA=0;EPP=16.0391;EPPR=76.8404;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=215;QR=1147;RO=34;RPL=6;RPP=16.0391;RPPR=76.8404;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:20:14,6,0:14:463:6,0:212,0:-13.4045,0,-35.9652,-17.6189,-37.7714,-55.0439 0|1:21:13,2,6:13:445:2,6:67,215:-13.6388,-12.1321,-47.6419,0,-30.7042,-34.3229 0|1:8:7,1,0:7:239:1,0:36,0:-1.19004,0,-19.4357,-3.29724,-19.7367,-22.6764 dDocent_Contig_6399 96 . C T 83.0506 . AB=0.28;ABP=13.5202;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X;DP=25;DPB=25;DPRA=0;EPP=18.2106;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=611;RO=18;RPL=7;RPP=18.2106;RPPR=42.0968;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:5,3:5:164:3:65:-3.65678,0,-12.6754 0/1:8:7,1:7:242:1:35:-1.09039,0,-19.7095 0/1:9:6,3:6:205:3:103:-6.90033,0,-16.076 dDocent_Contig_6400 7 . A G 226.656 . AB=0.184211;ABP=68.8402;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=126;DPB=126;DPRA=0;EPP=39.9253;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=59;MQMR=59.8716;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.376147;PAO=0;PQA=0;PQR=0;PRO=0;QA=635;QR=4094;RO=109;RPL=0;RPP=39.9253;RPPR=239.701;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:42,8:42:1561:8:303:-12.5704,0,-125.708 0/0:50:47,3:47:1768:3:111:0,-4.69801,-149.023 0/1:26:20,6:20:765:6:221:-12.4139,0,-61.3066 dDocent_Contig_6402 92 . C T 72.3442 . AB=0.227273;ABP=17.2236;AC=2;AF=0.5;AN=4;AO=5;CIGAR=1X;DP=22;DPB=22;DPRA=0;EPP=13.8677;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=174;QR=579;RO=17;RPL=5;RPP=13.8677;RPPR=39.9253;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:9,2:9:307:2:69:-3.24133,0,-24.65 ./.:.:.:.:.:.:.:. 0/1:11:8,3:8:272:3:105:-6.48483,0,-21.4997 dDocent_Contig_6403 15 . C T 322.595 . AB=0.222222;ABP=51.2652;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=90;DPB=90;DPRA=2;EPP=37.7539;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=617;QR=2888;RO=74;RPL=0;RPP=37.7539;RPPR=163.699;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:28,12:28:1109:12:458:-29.5198,0,-88.0582 0/0:18:18,0:18:689:0:0:0,-5.41854,-62.3303 0/1:32:28,4:28:1090:4:159:-5.05848,0,-88.7565 dDocent_Contig_6405 39 . C T 240.508 . AB=0.130435;ABP=30.2953;AC=0;AF=0;AN=6;AO=3;CIGAR=1X1M1X1M14I1X;DP=31;DPB=67.4;DPRA=0;EPP=9.52472;EPPR=42.0968;GTI=0;LEN=1;MEANALT=2;MQM=35.3333;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=707;RO=18;RPL=0;RPP=9.52472;RPPR=42.0968;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:13:8,2,3:8:318:2,3:77,120:-7.57947,-6.53984,-32.1173,0,-22.8335,-25.4129 0|0:10:7,1,2:7:277:1,2:39,80:-4.48956,-3.3942,-25.8865,0,-19.5965,-22.1996 0|0:8:3,0,5:3:112:0,5:0,197:-15.6983,-16.6014,-25.7613,0,-9.54063,-8.03548 dDocent_Contig_6406 46 . C T 84.4407 . AB=0.235294;ABP=13.3567;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=88;DPB=88;DPRA=0.478873;EPP=11.6962;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=3359;RO=84;RPL=0;RPP=11.6962;RPPR=185.414;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:35:35,0:35:1397:0:0:0,-10.536,-125.989 0/1:17:13,4:13:525:4:160:-9.66592,0,-42.4792 0/0:36:36,0:36:1437:0:0:0,-10.8371,-129.581 dDocent_Contig_6407 37 . G A 1814.7 . AB=0.590361;ABP=8.89682;AC=4;AF=0.666667;AN=6;AO=59;CIGAR=1X;DP=93;DPB=93;DPRA=0;EPP=131.127;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2309;QR=1377;RO=34;RPL=0;RPP=131.127;RPPR=76.8404;RPR=59;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:15,28:15:601:28:1067:-83.3825,0,-41.4841 1/1:10:0,10:0:0:10:395:-35.9042,-3.0103,0 0/1:40:19,21:19:776:21:847:-64.5018,0,-58.1168 dDocent_Contig_6408 25 . C G 40.8674 . AB=0.285714;ABP=5.80219;AC=1;AF=0.25;AN=4;AO=2;CIGAR=1X;DP=14;DPB=14;DPRA=1;EPP=7.35324;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=488;RO=12;RPL=0;RPP=7.35324;RPPR=29.068;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:283:0:0:0,-2.10721,-25.843 ./.:.:.:.:.:.:.:. 0/1:7:5,2:5:205:2:80:-5.48458,0,-16.7278 dDocent_Contig_6409 43 . A G 409.437 . AB=0.288136;ABP=26.0132;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=87;DPB=87;DPRA=0;EPP=42.0968;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=710;QR=2681;RO=69;RPL=0;RPP=42.0968;RPPR=152.842;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:2,4:2:79:4:163:-13.2522,0,-5.69145 0/0:28:27,1:27:1047:1:40:0,-4.43316,-90.5244 0/1:53:40,13:40:1555:13:507:-30.0102,0,-124.249 dDocent_Contig_6411 81 . G A 46.765 . AB=0.4;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=26;DPB=26;DPRA=0.47619;EPP=7.35324;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=847;RO=24;RPL=2;RPP=7.35324;RPPR=55.1256;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:439:0:0:0,-3.61236,-39.8467 0/1:5:3,2:3:79:2:78:-5.89832,0,-5.86455 0/0:9:9,0:9:329:0:0:0,-2.70927,-29.9592 dDocent_Contig_6412 8 . G T 153.922 . AB=0.15873;ABP=66.7413;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=124;DPB=124;DPRA=2.06557;EPP=24.725;EPPR=250.558;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.991228;PAO=0;PQA=0;PQR=0;PRO=0;QA=388;QR=4315;RO=114;RPL=0;RPP=24.725;RPPR=250.558;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:63:53,10:53:1993:10:388:-16.313,0,-160.653 0/0:24:24,0:24:908:0:0:0,-7.22472,-82.0376 0/0:37:37,0:37:1414:0:0:0,-11.1381,-127.539 dDocent_Contig_6415 20 . T C 92.5569 . AB=0.285714;ABP=8.59409;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=61;DPB=61;DPRA=0.595745;EPP=11.6962;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.964912;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=2224;RO=57;RPL=0;RPP=11.6962;RPPR=126.784;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:887:0:0:0,-6.92369,-80.144 0/1:14:10,4:10:391:4:159:-10.4775,0,-31.3326 0/0:24:24,0:24:946:0:0:0,-7.22472,-85.445 dDocent_Contig_6416 114 . A T 30.1772 . AB=0.25;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=36;DPB=36;DPRA=0.571429;EPP=7.35324;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=1151;RO=34;RPL=0;RPP=7.35324;RPPR=76.8404;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=76.8404;SRR=34;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:506:0:0:0,-4.51545,-45.8621 0/0:13:13,0:13:443:0:0:0,-3.91339,-40.1972 0/1:8:6,2:6:202:2:70:-4.23916,0,-16.1023 dDocent_Contig_6418 18 . C G 425.66 . AB=0.583333;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=72;DPB=72;DPRA=1;EPP=33.4109;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=563;QR=2287;RO=57;RPL=0;RPP=33.4109;RPPR=126.784;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:880:0:0:0,-6.62266,-79.5105 0/0:26:25,0:25:1010:0:0:0,-7.52575,-90.7945 0/1:24:10,14:10:397:14:563:-43.7879,0,-28.863 dDocent_Contig_6419 57 . G T 93.2412 . AB=0.266667;ABP=10.1038;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=22;DPB=22;DPRA=4.28571;EPP=11.6962;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.888889;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=700;RO=18;RPL=4;RPP=11.6962;RPPR=42.0968;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:220:0:0:0,-1.80618,-20.1482 0/1:15:11,4:11:440:4:163:-10.543,0,-35.4385 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 dDocent_Contig_6422 10 . A T 474.186 . AB=0.473684;ABP=3.23888;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X;DP=38;DPB=38;DPRA=0;EPP=42.0968;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.833333;PAIREDR=0.85;PAO=0;PQA=0;PQR=0;PRO=0;QA=683;QR=754;RO=20;RPL=0;RPP=42.0968;RPPR=46.4397;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:9,9:9:358:9:326:-24.2583,0,-27.1648 0/1:16:8,8:8:306:8:317:-24.0797,0,-23.0835 0/1:4:3,1:3:90:1:40:-2.79156,0,-7.18864 dDocent_Contig_6423 18 . G C 167.609 . AB=0.291667;ABP=12.0581;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=37;DPB=37;DPRA=3.69231;EPP=18.2106;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=276;QR=1161;RO=30;RPL=0;RPP=18.2106;RPPR=68.1545;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:393:0:0:0,-3.0103,-35.726 0/1:24:17,7:17:671:7:276:-17.982,0,-53.4947 0/0:3:3,0:3:97:0:0:0,-0.90309,-9.04764 dDocent_Contig_6424 21 . C T 127.437 . AB=0.16;ABP=53.2147;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=133;DPB=133;DPRA=1.20482;EPP=20.3821;EPPR=274.444;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.968;PAO=0;PQA=0;PQR=0;PRO=0;QA=315;QR=5010;RO=125;RPL=0;RPP=20.3821;RPPR=274.444;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=125;SRP=274.444;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:42,8:42:1681:8:315:-13.6645,0,-136.466 0/0:27:27,0:27:1078:0:0:0,-8.12781,-97.309 0/0:56:56,0:56:2251:0:0:0,-16.8577,-202.75 dDocent_Contig_6425 9 . G A 1217.54 . AB=0.289474;ABP=17.6392;AC=0;AF=0;AN=6;AO=11;CIGAR=2X;DP=86;DPB=86;DPRA=0;EPP=26.8965;EPPR=76.8404;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=424;QR=1237;RO=34;RPL=0;RPP=26.8965;RPPR=76.8404;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:38:16,11,11:16:578:11,11:424,440:-31.4356,-1.44306,-45.2843,0,-12.335,-43.8498 0|0:18:9,0,9:9:341:0,9:0,343:-25.8008,-28.5101,-56.4675,0,-28.3371,-25.6278 0|0:30:9,0,21:9:318:0,21:0,855:-68.2288,-70.9381,-96.8176,0,-26.2487,-19.9271 dDocent_Contig_6426 35 . C T 145.314 . 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AB=0.0952381;ABP=32.8939;AC=0;AF=0;AN=6;AO=2;CIGAR=1X3M1X2M1X;DP=43;DPB=43;DPRA=0;EPP=7.35324;EPPR=42.0968;GTI=0;LEN=1;MEANALT=2;MQM=6;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=697;RO=18;RPL=0;RPP=7.35324;RPPR=42.0968;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:21:3,2,16:3:116:2,16:80,635:-51.6675,-52.1303,-61.0542,0,-9.37621,-4.9069 0|0:10:7,0,3:7:271:0,3:0,120:-8.1776,-10.2848,-32.5377,0,-22.6486,-21.7455 0|0:12:8,0,4:8:310:0,4:0,152:-10.4365,-12.8447,-38.3168,0,-25.8543,-24.6502 dDocent_Contig_6450 13 . T G 33.5209 . AB=0.136364;ABP=28.2783;AC=1;AF=0.25;AN=4;AO=3;CIGAR=1X;DP=33;DPB=33;DPRA=2;EPP=9.52472;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.866667;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1150;RO=30;RPL=0;RPP=9.52472;RPPR=68.1545;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:423:0:0:0,-3.31133,-38.4196 0/1:22:19,3:19:727:3:122:-4.74983,0,-59.1357 ./.:.:.:.:.:.:.:. dDocent_Contig_6451 194 . T A 58.675 . AB=0.230769;ABP=11.1951;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=35;DPB=35;DPRA=1.18182;EPP=9.52472;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=1245;RO=32;RPL=3;RPP=9.52472;RPPR=72.4974;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=72.4974;SRR=32;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2605 0/1:13:10,3:10:396:3:118:-7.08933,0,-32.0833 0/0:14:14,0:14:561:0:0:0,-4.21442,-50.832 dDocent_Contig_6452 43 . C T 265.572 . AB=0.416667;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X3M1X1M1X;DP=36;DPB=36;DPRA=4;EPP=24.725;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=385;QR=940;RO=25;RPL=0;RPP=24.725;RPPR=57.2971;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:8:7,0:7:269:0:0:0,-2.10721,-24.1946 0|1:24:14,10:14:533:10:385:-27.7787,0,-41.0884 0|0:4:4,0:4:138:0:0:0,-1.20412,-12.7561 dDocent_Contig_6453 12 . T A 380.34 . AB=0.375;ABP=8.43898;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=37.7539;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=615;QR=1670;RO=42;RPL=0;RPP=37.7539;RPPR=94.2121;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:8,12:8:314:12:453:-35.0928,0,-22.6042 0/0:18:17,1:17:672:1:41:0,-1.32397,-56.7186 0/1:20:17,3:17:684:3:121:-5.2596,0,-55.8675 dDocent_Contig_6454 22 . T G 455.525 . AB=0.117333;ABP=479.976;AC=2;AF=0.333333;AN=6;AO=56;CIGAR=1X2M;DP=543;DPB=543;DPRA=0;EPP=124.613;EPPR=900.152;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=58.0093;NS=3;NUMALT=3;ODDS=0;PAIRED=0.946429;PAIREDR=0.981352;PAO=0;PQA=0;PQR=0;PRO=0;QA=2109;QR=16949;RO=429;RPL=0;RPP=124.613;RPPR=934.572;RPR=56;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=425;SRP=900.152;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:171:126,8,27,10:126:4978:8,27,10:312,976,407:-41.6885,-53.9702,-456.895,0,-379.667,-397.185,-46.0361,-425.728,-371.738,-448.363 0|1:204:159,13,17,7:159:6257:13,17,7:500,658,272:-6.18266,-12.9967,-520.739,0,-470.609,-506.54,-31.6968,-502.304,-489.309,-541.245 0|0:168:144,7,12,4:144:5714:7,12,4:275,475,147:0,-20.7289,-485.222,-4.25115,-448.238,-467.243,-31.3416,-475.318,-458.845,-496.732 dDocent_Contig_6455 183 . C A 72.6555 . AB=0.3;ABP=6.48466;AC=1;AF=0.25;AN=4;AO=3;CIGAR=1X;DP=15;DPB=15;DPRA=2;EPP=9.52472;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=476;RO=12;RPL=3;RPP=9.52472;RPPR=29.068;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=29.068;SRR=12;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:7,3:7:278:3:122:-8.36219,0,-22.3799 0/0:5:5,0:5:198:0:0:0,-1.50515,-18.1974 ./.:.:.:.:.:.:.:. dDocent_Contig_6456 18 . C T 68.0651 . AB=0.176471;ABP=18.4661;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X3M1X;DP=24;DPB=24;DPRA=1.21429;EPP=9.52472;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.789474;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=726;RO=19;RPL=0;RPP=9.52472;RPPR=44.2683;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:6:4,2,0:4:146:2,0:75,0:-5.31341,0,-11.6911,-6.51753,-12.2932,-18.4393 0|0:11:8,1,2:8:307:1,2:40,76:-3.81101,-2.91755,-27.8189,0,-21.8881,-24.583 0|0:7:7,0,0:7:273:0,0:0,0:0,-2.10721,-24.9378,-2.10721,-24.9378,-24.9378 dDocent_Contig_6457 143 . A G 182.952 . AB=0.0895522;ABP=101.051;AC=0;AF=0;AN=6;AO=12;CIGAR=1X4M;DP=109;DPB=109;DPRA=0;EPP=3.73412;EPPR=57.7314;GTI=0;LEN=1;MEANALT=4.66667;MQM=11;MQMR=20.1857;NS=3;NUMALT=6;ODDS=0;PAIRED=0.0833333;PAIREDR=0.157143;PAO=0;PQA=0;PQR=0;PRO=0;QA=127;QR=2393;RO=70;RPL=0;RPP=29.068;RPPR=155.013;RPR=12;RUN=1;SAF=5;SAP=3.73412;SAR=7;SRF=14;SRP=57.7314;SRR=56;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:42:29,1,1,6,4,0,1:29:992:1,1,6,4,0,1:34,21,42,102,0,39:0,-7.50675,-44.7507,-7.40765,-43.7318,-44.6522,-8.21716,-44.4711,-44.3726,-43.8858,-1.5738,-37.9256,-37.8271,-38.5673,-37.9431,-8.72987,-45.0517,-44.9532,-45.6919,-39.1472,-46.2731,-5.5039,-41.8403,-41.7418,-42.4803,-35.9351,-43.0619,-42.7608 0|0:46:27,3,0,4,1,8,1:27:920:3,0,4,1,8,1:99,0,38,29,291,34:-15.4009,-19.3655,-35.4116,-23.5287,-36.3147,-40.4928,-22.3374,-35.0822,-39.2597,-38.0556,-21.4905,-34.2742,-38.4525,-37.2195,-38.1515,0,-12.8137,-16.9956,-15.7601,-14.9538,-14.5874,-20.8232,-33.6092,-37.7877,-36.5545,-35.7472,-14.2886,-37.4866 0|0:21:14,0,2,2,0,0,3:14:481:0,2,2,0,0,3:0,42,47,0,0,114:-5.2129,-9.42732,-32.1459,-6.8263,-29.5124,-28.9104,-6.18948,-28.8858,-26.2533,-28.2837,-9.42732,-32.1459,-29.5124,-28.8858,-32.1459,-9.42732,-32.1459,-29.5124,-28.8858,-32.1459,-32.1459,0,-22.7725,-20.1371,-19.5098,-22.7725,-22.7725,-21.8694 dDocent_Contig_6461 160 . C A 33.7831 . AB=0.2;ABP=10.8276;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=25;DPB=25;DPRA=1.33333;EPP=7.35324;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=892;RO=23;RPL=2;RPP=7.35324;RPPR=52.9542;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:8,2:8:302:2:77:-4.29884,0,-24.5226 0/0:9:9,0:9:348:0:0:0,-2.70927,-31.6726 0/0:6:6,0:6:242:0:0:0,-1.80618,-22.1573 dDocent_Contig_6463 8 . G C 1953.37 . AB=0.586207;ABP=10.4981;AC=3;AF=0.5;AN=6;AO=68;CIGAR=1X;DP=116;DPB=116;DPRA=0;EPP=150.67;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2589;QR=1818;RO=48;RPL=0;RPP=150.67;RPPR=107.241;RPR=68;RUN=1;SAF=68;SAP=150.67;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:22,36:22:826:36:1363:-105.497,0,-57.1989 0/1:31:12,19:12:449:19:728:-56.5179,0,-31.4251 0/1:27:14,13:14:543:13:498:-37.0385,0,-41.0882 dDocent_Contig_6464 1 . N G 237.354 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=3;CIGAR=1X3M1X4M;DP=9;DPB=10.7778;DPRA=0.25;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=59;MQMR=0;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=102;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,0,2:0:0:0,2:0,70:-6.29107,-6.29107,-6.29107,-0.60206,-0.60206,0 1|1:1:0,0,1:0:0:0,1:0,32:-2.86547,-2.86547,-2.86547,-0.30103,-0.30103,0 1|1:6:0,6,0:0:0:6,0:205,0:-14.0926,-1.80618,0,-14.0926,-1.80618,-14.0926 dDocent_Contig_6465 8 . G A 53.1689 . AB=0.138889;ABP=43.7857;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=81;DPB=81;DPRA=1.6;EPP=13.8677;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.605263;PAO=0;PQA=0;PQR=0;PRO=0;QA=189;QR=2895;RO=76;RPL=0;RPP=13.8677;RPPR=168.042;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:1047:0:0:0,-8.42884,-94.5318 0/1:36:31,5:31:1192:5:189:-6.53874,0,-96.7392 0/0:17:17,0:17:656:0:0:0,-5.11751,-59.3766 dDocent_Contig_6466 8 . G A 1567.97 . AB=0.528302;ABP=3.74778;AC=3;AF=0.5;AN=6;AO=56;CIGAR=1X;DP=106;DPB=106;DPRA=0;EPP=124.613;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2127;QR=1870;RO=50;RPL=0;RPP=124.613;RPPR=111.584;RPR=56;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:18,21:18:653:21:787:-59.4137,0,-47.3573 0/1:38:14,24:14:531:24:920:-71.6785,0,-36.6939 0/1:29:18,11:18:686:11:420:-29.4214,0,-53.3426 dDocent_Contig_6467 43 . G A 81.5955 . AB=0.428571;ABP=3.32051;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=18;DPB=18;DPRA=1.27273;EPP=9.52472;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=569;RO=15;RPL=0;RPP=9.52472;RPPR=35.5824;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:4,3:4:159:3:120:-9.0801,0,-12.5849 0/0:5:5,0:5:166:0:0:0,-1.50515,-15.2571 0/0:6:6,0:6:244:0:0:0,-1.80618,-22.3388 dDocent_Contig_6468 54 . T C 219.971 . AB=0.444444;ABP=3.49285;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=30;DPB=30;DPRA=0.75;EPP=20.3821;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.954545;PAO=0;PQA=0;PQR=0;PRO=0;QA=321;QR=885;RO=22;RPL=8;RPP=20.3821;RPPR=50.7827;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:3,7:3:119:7:280:-22.5608,0,-8.08509 0/1:8:7,1:7:282:1:41:-1.68633,0,-23.3444 0/0:12:12,0:12:484:0:0:0,-3.61236,-43.9098 dDocent_Contig_6469 8 . G T 95.1602 . AB=0.363636;ABP=4.78696;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=55;DPB=55;DPRA=0.5;EPP=11.6962;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=152;QR=1941;RO=51;RPL=0;RPP=11.6962;RPPR=113.755;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:573:0:0:0,-4.51545,-51.9103 0/0:29:29,0:29:1098:0:0:0,-8.72987,-99.1242 0/1:11:7,4:7:270:4:152:-10.7379,0,-21.3542 dDocent_Contig_6471 11 . T A 1906.8 . AB=0.190338;ABP=865.055;AC=1;AF=0.166667;AN=6;AO=197;CIGAR=2M3X;DP=1035;DPB=1034.8;DPRA=0;EPP=430.79;EPPR=851.042;GTI=0;LEN=1;MEANALT=21.3333;MQM=17;MQMR=58.7891;NS=3;NUMALT=5;ODDS=0;PAIRED=0.0203046;PAIREDR=0.30839;PAO=0;PQA=0;PQR=0;PRO=0;QA=7788;QR=17034;RO=441;RPL=0;RPP=430.79;RPPR=960.63;RPR=197;RUN=1;SAF=197;SAP=430.79;SAR=0;SRF=428;SRP=851.042;SRR=13;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:388:153,13,19,75,36,27:153:5918:13,19,75,36,27:484,760,2949,1375,1030:-66.4657,-96.0353,-576.446,-81.1721,-549.009,-559.778,-29.6238,-497.448,-482.587,-491.357,0,-467.85,-452.988,-401.427,-473.501,-28.7363,-496.582,-481.72,-430.159,-400.56,-504.943 0|1:391:160,23,9,94,23,13:160:6138:23,9,94,23,13:886,348,3712,886,481:-69.1474,-89.0799,-585.451,-99.2704,-574.335,-599.857,0,-475.059,-485.247,-474.989,-45.2597,-520.332,-530.524,-431.245,-541.641,-79.1621,-554.229,-564.421,-465.141,-510.419,-578.548 0|0:256:128,9,20,28,31,7:128:4978:9,20,28,31,7:344,807,1127,1187,266:-58.7831,-89.0737,-494.44,-64.8162,-464.649,-466.872,-58.9848,-458.812,-434.557,-458.626,0,-399.86,-375.605,-369.768,-398.773,-75.4952,-475.334,-451.078,-445.24,-386.289,-481.471 dDocent_Contig_6472 7 . A T 449.243 . AB=0.380952;ABP=8.18047;AC=4;AF=0.666667;AN=6;AO=17;CIGAR=1X;DP=43;DPB=43;DPRA=0;EPP=39.9253;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.882353;PAIREDR=0.884615;PAO=0;PQA=0;PQR=0;PRO=0;QA=653;QR=989;RO=26;RPL=0;RPP=39.9253;RPPR=59.4686;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:9,12:9:346:12:458:-35.2479,0,-25.1772 0/1:21:17,4:17:643:4:156:-8.09566,0,-51.8837 1/1:1:0,1:0:0:1:39:-3.89656,-0.30103,0 dDocent_Contig_6473 68 . C A 82.7561 . AB=0.6;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=21;DPB=21;DPRA=0.625;EPP=9.52472;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=701;RO=18;RPL=3;RPP=9.52472;RPPR=42.0968;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:222:0:0:0,-1.80618,-20.3371 0/0:10:10,0:10:397:0:0:0,-3.0103,-36.0891 0/1:5:2,3:2:82:3:118:-9.49736,0,-6.27453 dDocent_Contig_6474 23 . G T 55.1791 . AB=0.25;ABP=9.52472;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=56;DPB=56;DPRA=0.545455;EPP=9.52472;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=111;QR=2120;RO=53;RPL=0;RPP=9.52472;RPPR=118.098;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:841:0:0:0,-6.32163,-76.002 0/0:23:23,0:23:922:0:0:0,-6.92369,-83.2866 0/1:12:9,3:9:357:3:111:-6.73976,0,-28.8782 dDocent_Contig_6475 63 . C T 51.7014 . AB=0.272727;ABP=7.94546;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=23;DPB=23;DPRA=1.83333;EPP=9.52472;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=697;RO=20;RPL=3;RPP=9.52472;RPPR=46.4397;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:244:0:0:0,-2.10721,-22.3001 0/0:5:5,0:5:173:0:0:0,-1.50515,-15.9102 0/1:11:8,3:8:280:3:104:-6.39176,0,-22.2287 dDocent_Contig_6477 35 . C G 177.137 . AB=0.333333;ABP=8.07707;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=35;DPB=35;DPRA=0.75;EPP=18.2106;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.714286;PAIREDR=0.464286;PAO=0;PQA=0;PQR=0;PRO=0;QA=274;QR=1118;RO=28;RPL=0;RPP=18.2106;RPPR=63.8115;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:12,1:12:476:1:41:-0.181177,0,-39.2773 0/0:14:14,0:14:560:0:0:0,-4.21442,-50.7441 0/1:8:2,6:2:82:6:233:-18.9268,0,-5.37144 dDocent_Contig_6478 8 . G T 46.7648 . AB=0.4;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=47;DPB=47;DPRA=0.238095;EPP=7.35324;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.977778;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=1698;RO=45;RPL=0;RPP=7.35324;RPPR=100.727;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:563:0:0:0,-4.51545,-51.0063 0/0:27:27,0:27:1019:0:0:0,-8.12781,-92.0206 0/1:5:3,2:3:116:2:78:-5.89832,0,-9.31255 dDocent_Contig_6479 194 . C T 37.5474 . AB=0.222222;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=28;DPB=28;DPRA=0.947368;EPP=7.35324;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=950;RO=26;RPL=2;RPP=7.35324;RPPR=59.4686;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:273:0:0:0,-2.10721,-24.9357 0/0:12:12,0:12:410:0:0:0,-3.61236,-37.2142 0/1:9:7,2:7:267:2:81:-4.97646,0,-21.6783 dDocent_Contig_6480 44 . A T 64.8206 . AB=0.172414;ABP=30.0414;AC=3;AF=0.5;AN=6;AO=5;CIGAR=1X;DP=29;DPB=29;DPRA=0;EPP=13.8677;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=187;QR=919;RO=24;RPL=0;RPP=13.8677;RPPR=55.1256;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:11,1:11:403:1:41:-0.482207,0,-32.9958 0/1:11:8,3:8:313:3:108:-6.75837,0,-25.223 0/1:6:5,1:5:203:1:38:-1.99109,0,-16.8469 dDocent_Contig_6481 78 . A T 90 . AB=0.238095;ABP=15.5221;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=71;DPB=71;DPRA=0.84;EPP=13.8677;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=180;QR=2597;RO=66;RPL=0;RPP=13.8677;RPPR=146.327;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=146.327;SRR=66;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:597:0:0:0,-4.51545,-54.0687 0/1:21:16,5:16:637:5:180:-10.2218,0,-51.343 0/0:35:35,0:35:1363:0:0:0,-10.536,-122.933 dDocent_Contig_6483 10 . T A 282.882 . AB=0.34375;ABP=9.79615;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=57;DPB=57;DPRA=2.56;EPP=26.8965;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=431;QR=1819;RO=46;RPL=0;RPP=26.8965;RPPR=102.898;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:406:0:0:0,-3.0103,-36.9006 0/1:32:21,11:21:822:11:431:-29.51,0,-64.6635 0/0:15:15,0:15:591:0:0:0,-4.51545,-53.522 dDocent_Contig_6484 10 . T C 551.656 . AB=0.247525;ABP=58.9311;AC=3;AF=0.5;AN=6;AO=25;CIGAR=2X;DP=101;DPB=101;DPRA=0;EPP=57.2971;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.802632;PAO=0;PQA=0;PQR=0;PRO=0;QA=980;QR=3016;RO=76;RPL=0;RPP=57.2971;RPPR=168.042;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:38:28,10:28:1102:10:380:-23.1071,0,-88.0296 0|1:35:26,9:26:1041:9:357:-21.9559,0,-83.4469 0|1:28:22,6:22:873:6:243:-13.8193,0,-70.4494 dDocent_Contig_6485 20 . C T 394.717 . AB=0.358491;ABP=12.2288;AC=1;AF=0.166667;AN=6;AO=19;CIGAR=1X;DP=78;DPB=78;DPRA=4.24;EPP=44.2683;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=626;QR=2311;RO=59;RPL=0;RPP=44.2683;RPPR=131.127;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:635:0:0:0,-4.81648,-57.4854 0/0:9:9,0:9:349:0:0:0,-2.70927,-31.7695 0/1:53:34,19:34:1327:19:626:-40.6935,0,-103.742 dDocent_Contig_6486 1 . N G 562.505 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=18;CIGAR=1X;DP=18;DPB=18;DPRA=0;EPP=42.0968;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=46.5556;MQMR=0;NS=3;NUMALT=1;ODDS=6.77626e-21;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=625;QR=0;RO=0;RPL=0;RPP=42.0968;RPPR=0;RPR=18;RUN=1;SAF=0;SAP=42.0968;SAR=18;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:9:0,9:0:0:9:313:-27.1175,-2.70927,0 1/1:2:0,2:0:0:2:70:-6.52864,-0.60206,0 1/1:7:0,7:0:0:7:242:-22.0012,-2.10721,0 dDocent_Contig_6487 114 . A C 409.463 . AB=0.62963;ABP=6.95112;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=35;DPB=35;DPRA=1.6875;EPP=39.9253;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=564;QR=589;RO=18;RPL=0;RPP=39.9253;RPPR=42.0968;RPR=17;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:272:0:0:0,-2.40824,-24.8116 0/1:17:3,14:3:103:14:470:-37.5046,0,-4.49251 0/1:10:7,3:7:214:3:94:-5.76037,0,-16.55 dDocent_Contig_6489 20 . G C 1307.17 . AB=0.564103;ABP=5.79424;AC=3;AF=0.5;AN=6;AO=44;CIGAR=1X;DP=78;DPB=78;DPRA=0;EPP=98.5551;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.909091;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1743;QR=1340;RO=34;RPL=0;RPP=98.5551;RPPR=76.8404;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:18,18:18:700:18:696:-52.1275,0,-52.4821 0/1:36:11,25:11:437:25:1006:-80.0001,0,-28.8478 0/1:6:5,1:5:203:1:41:-2.28839,0,-16.8469 dDocent_Contig_6491 149 . G A 38.0413 . AB=0.25;ABP=7.35324;AC=1;AF=0.25;AN=4;AO=2;CIGAR=1X;DP=15;DPB=15;DPRA=1.14286;EPP=7.35324;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=520;RO=13;RPL=0;RPP=7.35324;RPPR=31.2394;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=31.2394;SRR=13;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:8:6,2:6:245:2:77:-4.9009,0,-20.0212 0/0:7:7,0:7:275:0:0:0,-2.10721,-25.1137 dDocent_Contig_6492 23 . G A 622.249 . AB=0.0615385;ABP=220.091;AC=0;AF=0;AN=6;AO=8;CIGAR=1X3M1X1M1X;DP=163;DPB=163;DPRA=0;EPP=20.3821;EPPR=257.073;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=306;QR=4592;RO=117;RPL=0;RPP=20.3821;RPPR=257.073;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=117;SRP=257.073;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:42:33,1,6:33:1308:1,6:39,244:-10.1991,-16.9289,-124.287,0,-104.46,-105.86 0|0:88:57,7,20:57:2219:7,20:267,784:-47.3125,-42.5728,-222.83,0,-160.467,-176.346 0|0:33:27,0,5:27:1065:0,5:0,201:-8.43,-16.5578,-104.171,0,-87.6057,-86.1005 dDocent_Contig_6495 7 . A T 4465.91 . AB=0.0769231;ABP=508.295;AC=1;AF=0.166667;AN=6;AO=25;CIGAR=1X1M1X3M1X3M1X;DP=325;DPB=325;DPRA=0;EPP=57.2971;EPPR=141.985;GTI=0;LEN=1;MEANALT=6;MQM=29;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0.46875;PAO=0;PQA=0;PQR=0;PRO=0;QA=989;QR=2484;RO=64;RPL=0;RPP=57.2971;RPPR=141.985;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:138:20,4,71,18,18:20:762:4,71,18,18:157,2805,724,715:-224.785,-221.938,-283.238,0,-53.6395,-41.1305,-171.138,-224.776,-2.8328,-228.224,-171.942,-225.579,-3.63764,-174.779,-229.028 0|0:108:32,1,41,19,10:32:1249:1,41,19,10:40,1626,756,404:-124.2,-131.392,-233.761,0,-100.229,-90.3277,-71.5864,-171.815,-40.422,-168.537,-100.525,-200.754,-69.3614,-140.949,-200.186 1|0:79:12,20,31,6,9:12:473:20,31,6,9:792,1202,244,362:-101.322,-59.6196,-92.5158,-6.36919,0,-35.9678,-84.8037,-78.4083,-25.1654,-121.92,-75.0956,-68.7021,-15.4555,-93.8881,-111.31 dDocent_Contig_6496 8 . G A 150.499 . AB=0.15493;ABP=76.4428;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=88;DPB=88;DPRA=2.08824;EPP=26.8965;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=422;QR=2909;RO=77;RPL=0;RPP=26.8965;RPPR=170.214;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:15,2:15:573:2:76:-2.09716,0,-46.7944 0/0:17:17,0:17:642:0:0:0,-5.11751,-58.1146 0/1:54:45,9:45:1694:9:346:-15.2435,0,-136.466 dDocent_Contig_6497 46 . G A 37.4815 . AB=0.157895;ABP=22.325;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=28;DPB=28;DPRA=1.05556;EPP=9.52472;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=991;RO=25;RPL=0;RPP=9.52472;RPPR=57.2971;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:2:1,1:1:39:1:40:-3.39362,0,-3.2945 0/0:9:9,0:9:346:0:0:0,-2.70927,-31.4927 0/1:17:15,2:15:606:2:82:-2.66217,0,-49.7603 dDocent_Contig_6498 19 . T A 120.876 . AB=0.170213;ABP=47.41;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=2X;DP=53;DPB=53;DPRA=3.91667;EPP=20.3821;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=309;QR=1729;RO=45;RPL=0;RPP=20.3821;RPPR=100.727;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:11,4:11:416:4:161:-10.3598,0,-33.2712 0|1:32:28,4:28:1084:4:148:-4.04611,0,-88.2269 0|0:6:6,0:6:229:0:0:0,-1.80618,-20.9759 dDocent_Contig_6499 62 . G A 823.475 . AB=0.359551;ABP=18.2594;AC=2;AF=0.333333;AN=6;AO=32;CIGAR=1X3M1X;DP=94;DPB=94;DPRA=8.9;EPP=72.4974;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1231;QR=2422;RO=62;RPL=32;RPP=72.4974;RPPR=137.642;RPR=0;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:67:48,19:48:1872:19:732:-46.0363,0,-148.537 0|1:22:9,13:9:350:13:499:-38.6298,0,-25.2374 0|0:5:5,0:5:200:0:0:0,-1.50515,-18.3799 dDocent_Contig_6500 46 . C T 286.23 . AB=0.295455;ABP=19.0002;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X;DP=75;DPB=75;DPRA=0;EPP=3.55317;EPPR=106.394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.6875;PAIREDR=0.966102;PAO=0;PQA=0;PQR=0;PRO=0;QA=559;QR=2337;RO=59;RPL=0;RPP=37.7539;RPPR=131.127;RPR=16;RUN=1;SAF=9;SAP=3.55317;SAR=7;SRF=56;SRP=106.394;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:22,2:22:869:2:71:0,-0.482816,-71.7783 0/1:44:31,13:31:1232:13:475:-29.842,0,-97.9105 0/0:7:6,1:6:236:1:13:0,-0.807218,-20.3115 dDocent_Contig_6502 45 . G C 63.4851 . AB=0.375;ABP=4.09604;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=21;DPB=21;DPRA=1.23077;EPP=9.52472;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=107;QR=700;RO=18;RPL=0;RPP=9.52472;RPPR=42.0968;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:295:0:0:0,-2.40824,-26.8955 0/1:8:5,3:5:201:3:107:-7.57016,0,-16.0627 0/0:5:5,0:5:204:0:0:0,-1.50515,-18.744 dDocent_Contig_6503 82 . C A 222.664 . AB=0.416667;ABP=4.45795;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=29;DPB=29;DPRA=2.4;EPP=24.725;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.947368;PAO=0;PQA=0;PQR=0;PRO=0;QA=338;QR=653;RO=19;RPL=10;RPP=24.725;RPPR=44.2683;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:1,7:1:31:7:242:-19.7095,0,-0.691214 0/1:16:13,3:13:451:3:96:-4.14102,0,-36.1052 0/0:5:5,0:5:171:0:0:0,-1.50515,-15.7265 dDocent_Contig_6504 66 . A T 164.639 . AB=0.166667;ABP=14.5915;AC=0;AF=0;AN=6;AO=2;CIGAR=1X3M1X3M;DP=34;DPB=34;DPRA=1.33333;EPP=7.35324;EPPR=52.9542;GTI=0;LEN=1;MEANALT=2;MQM=34.5;MQMR=60;NS=3;NUMALT=3;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=49;QR=874;RO=23;RPL=2;RPP=7.35324;RPPR=52.9542;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:13:10,0,0,2:10:382:0,0,2:0,0,77:-1.93029,-4.94059,-36.3159,-4.94059,-36.3159,-36.3159,0,-31.3338,-31.3338,-30.7317 0|0:12:4,6,2,0:4:152:6,2,0:235,49,0:-16.8118,0,-10.7571,-14.4909,-9.05423,-26.3588,-18.0159,-12.5633,-26.9609,-30.4961 0|0:9:9,0,0,0:9:340:0,0,0:0,0,0:0,-2.70927,-30.9551,-2.70927,-30.9551,-30.9551,-2.70927,-30.9551,-30.9551,-30.9551 dDocent_Contig_6505 12 . G A 2047.92 . AB=0.0695187;ABP=304.009;AC=0;AF=0;AN=6;AO=13;CIGAR=1X3M1X3M1X1M2X;DP=187;DPB=186.917;DPRA=0;EPP=31.2394;EPPR=146.327;GTI=0;LEN=1;MEANALT=7;MQM=47.2308;MQMR=58.9091;NS=3;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=0.227273;PAO=0;PQA=0;PQR=0;PRO=0;QA=513;QR=2572;RO=66;RPL=0;RPP=31.2394;RPPR=146.327;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:75:15,9,8,0,4,33:15:586:9,8,0,4,33:322,314,0,164,1253:-98.2373,-76.5052,-121.925,-77.4541,-99.3365,-123.176,-102.753,-124.634,-125.584,-150.882,-89.2139,-111.096,-112.045,-137.344,-136.14,0,-21.8887,-22.8351,-48.1344,-34.5944,-38.2004 0|0:35:16,0,1,3,3,10:16:622:0,1,3,3,10:0,39,120,115,388:-27.0656,-31.8821,-82.4119,-28.7195,-79.2493,-78.9482,-21.9948,-72.5258,-69.3632,-71.6228,-22.444,-72.9735,-69.8108,-63.0873,-72.0704,0,-50.5309,-47.3683,-40.6441,-41.0925,-47.5206 0|0:77:35,2,4,0,1,30:35:1364:2,4,0,1,30:78,160,0,41,1143:-83.2063,-87.3303,-198.835,-80.8056,-186.501,-191.709,-93.7423,-199.437,-192.913,-205.849,-90.3576,-196.053,-189.529,-202.465,-202.164,0,-105.691,-99.1662,-112.102,-108.718,-103.071 dDocent_Contig_6508 11 . G A 374.705 . AB=0.262295;ABP=32.9481;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=94;DPB=94;DPRA=0;EPP=39.9253;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=678;QR=3007;RO=77;RPL=0;RPP=39.9253;RPPR=170.214;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:32,1:32:1287:1:40:0,-5.93831,-112.103 0/1:25:20,5:20:751:5:198:-10.6718,0,-60.3703 0/1:36:25,11:25:969:11:440:-29.1175,0,-76.6574 dDocent_Contig_6509 53 . C A 48.0569 . AB=0.133333;ABP=38.0434;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=88;DPB=88;DPRA=1.03448;EPP=11.6962;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=3326;RO=84;RPL=4;RPP=11.6962;RPPR=185.414;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:32,0:32:1291:0:0:0,-9.63296,-116.455 0/1:30:26,4:26:1003:4:163:-6.02753,0,-81.5233 0/0:26:26,0:26:1032:0:0:0,-7.82678,-93.1707 dDocent_Contig_6510 11 . G A 476.499 . AB=0.316667;ABP=20.5268;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=60;DPB=60;DPRA=0;EPP=44.2683;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.736842;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=758;QR=1631;RO=41;RPL=0;RPP=44.2683;RPPR=92.0407;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:18,2:18:718:2:80:-1.57119,0,-58.9268 0/1:19:13,6:13:511:6:240:-16.2561,0,-40.6159 0/1:21:10,11:10:402:11:438:-33.4517,0,-30.2184 dDocent_Contig_6511 8 . G A 2099.09 . AB=0.0769231;ABP=205.124;AC=0;AF=0;AN=6;AO=10;CIGAR=1X3M1X2M;DP=185;DPB=185;DPRA=0;EPP=24.725;EPPR=118.098;GTI=0;LEN=1;MEANALT=3.5;MQM=38.7;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=367;QR=2041;RO=53;RPL=0;RPP=24.725;RPPR=118.098;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:57:18,5,16,18,0:18:687:5,16,18,0:187,641,718,0:-53.4729,-44.355,-99.2041,-6.07869,-47.898,-57.6193,0,-41.8187,-3.53843,-50.9377,-58.8915,-100.709,-62.4358,-56.3562,-115.248 0|0:55:13,0,13,19,7:13:493:0,13,19,7:0,523,751,285:-59.9329,-63.8463,-104.263,-20.7406,-61.1572,-57.2438,-2.69495,-43.1087,0,-37.3892,-40.3332,-80.75,-37.6427,-19.5943,-78.6428 0|0:73:22,5,9,34,3:22:861:5,9,34,3:180,359,1309,121:-100.219,-93.5073,-162.797,-77.2743,-134.737,-145.363,0,-57.4681,-41.2324,-60.5654,-96.8666,-154.327,-138.097,-60.8247,-166.761 dDocent_Contig_6512 12 . T C 171.957 . AB=0.228571;ABP=25.4075;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X;DP=35;DPB=35;DPRA=0;EPP=20.3821;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=57.875;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.703704;PAO=0;PQA=0;PQR=0;PRO=0;QA=323;QR=1080;RO=27;RPL=0;RPP=20.3821;RPPR=61.6401;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:12,1:12:478:1:41:-0.178031,0,-39.4566 0/1:13:10,3:10:402:3:120:-7.24811,0,-32.6256 0/1:9:5,4:5:200:4:162:-12.2577,0,-15.6703 dDocent_Contig_6513 8 . G A 56.2174 . AB=0.193548;ABP=28.2974;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=78;DPB=78;DPRA=1.31915;EPP=16.0391;EPPR=150.791;GTI=0;LEN=1;MEANALT=1;MQM=32.6667;MQMR=49.9167;NS=3;NUMALT=1;ODDS=0;PAIRED=0.333333;PAIREDR=0.555556;PAO=0;PQA=0;PQR=0;PRO=0;QA=225;QR=2730;RO=72;RPL=0;RPP=16.0391;RPPR=159.356;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=71;SRP=150.791;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:942:0:0:0,-7.52575,-73.7372 0/1:31:25,6:25:942:6:225:-6.84358,0,-70.7205 0/0:22:22,0:22:846:0:0:0,-6.62266,-70.1509 dDocent_Contig_6514 98 . N T 3169.1 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=108;CIGAR=6X;DP=108;DPB=202.5;DPRA=0;EPP=237.529;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=78.0788;PAIRED=1;PAIREDR=0;PAO=564;PQA=14308;PQR=0;PRO=0;QA=3522;QR=0;RO=0;RPL=108;RPP=237.529;RPPR=0;RPR=0;RUN=1;SAF=108;SAP=237.529;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:108:0,108:0:0:108:3522:-316.91,-32.5112,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_6515 8 . G A 1889.54 . AB=0.120206;ABP=2681.68;AC=3;AF=0.5;AN=6;AO=257;CIGAR=1X;DP=2138;DPB=2138;DPRA=0;EPP=561.079;EPPR=3994.18;GTI=0;LEN=1;MEANALT=3;MQM=54.1051;MQMR=49.8079;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.00870511;PAO=0;PQA=0;PQR=0;PRO=0;QA=9807;QR=69656;RO=1838;RPL=0;RPP=561.079;RPPR=3994.18;RPR=257;RUN=1;SAF=257;SAP=561.079;SAR=0;SRF=1838;SRP=3994.18;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:752:646,92:646:24375:92:3497:-62.6757,0,-1831.75 0/1:583:492,84:492:18582:84:3203:-103.042,0,-1392.19 0/1:803:700,81:700:26699:81:3107:-26.9532,0,-1998.2 dDocent_Contig_6516 9 . C T 869.371 . AB=0.434211;ABP=5.8675;AC=3;AF=0.5;AN=6;AO=33;CIGAR=1X1M1X;DP=76;DPB=76;DPRA=0;EPP=74.6689;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1248;QR=1653;RO=42;RPL=0;RPP=74.6689;RPPR=94.2121;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:28:17,11:17:663:11:419:-29.6312,0,-51.5746 0|1:10:2,7:2:79:7:260:-20.9126,0,-4.59016 0|1:38:23,15:23:911:15:569:-40.11,0,-70.8637 dDocent_Contig_6517 12 . A T 824.071 . AB=0.109606;ABP=1077.93;AC=3;AF=0.5;AN=6;AO=89;CIGAR=1X2M1X;DP=812;DPB=812.25;DPRA=0;EPP=196.271;EPPR=1419.62;GTI=0;LEN=1;MEANALT=4.33333;MQM=60;MQMR=47.8216;NS=3;NUMALT=1;ODDS=5.55112e-17;PAIRED=0.426966;PAIREDR=0.464912;PAO=1;PQA=35;PQR=0;PRO=0;QA=3543;QR=26961;RO=684;RPL=0;RPP=196.271;RPPR=1488.3;RPR=89;RUN=1;SAF=89;SAP=196.271;SAR=0;SRF=676;SRP=1419.62;SRR=8;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:260:214,22:214:8423:22:874:-7.55856,0,-573.182 0|1:237:199,35:199:7819:35:1394:-54.9803,0,-537.066 0|1:315:271,32:271:10719:32:1275:-23.5849,0,-798.165 dDocent_Contig_6519 21 . T C 119.757 . AB=0.3125;ABP=7.89611;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=112;DPB=112;DPRA=0.717391;EPP=18.2106;EPPR=231.015;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=55.6381;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.961905;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=4145;RO=105;RPL=0;RPP=18.2106;RPPR=231.015;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:50:48,2:48:1871:2:77:0,-7.74236,-159.447 0/1:16:11,5:11:429:5:196:-13.1976,0,-32.0238 0/0:46:46,0:46:1845:0:0:0,-13.8474,-165.454 dDocent_Contig_6521 19 . T G 88.1983 . AB=0.178571;ABP=28.1373;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=162;DPB=162;DPRA=0.691176;EPP=20.3821;EPPR=337.417;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=320;QR=5802;RO=154;RPL=0;RPP=20.3821;RPPR=337.417;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=154;SRP=337.417;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:66:63,3:63:2322:3:119:0,-8.77258,-198.095 0/1:28:23,5:23:847:5:201:-10.0417,0,-68.1142 0/0:68:68,0:68:2633:0:0:0,-20.47,-237.14 dDocent_Contig_6522 7 . A C 48.8381 . AB=0.148148;ABP=32.0437;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=58;DPB=58;DPRA=1.74194;EPP=11.6962;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=2055;RO=54;RPL=0;RPP=11.6962;RPPR=120.27;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:495:0:0:0,-3.91339,-44.8967 0/1:27:23,4:23:872:4:154:-6.10565,0,-70.6713 0/0:18:18,0:18:688:0:0:0,-5.41854,-62.2544 dDocent_Contig_6525 8 . G A 1313.41 . AB=0.505155;ABP=3.03269;AC=3;AF=0.5;AN=6;AO=49;CIGAR=1X;DP=97;DPB=97;DPRA=0;EPP=109.412;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=56.8163;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1896;QR=1849;RO=48;RPL=0;RPP=109.412;RPPR=107.241;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:18,17:18:695:17:652:-48.437,0,-52.3481 0/1:18:7,11:7:271:11:429:-26.1906,0,-19.3378 0/1:44:23,21:23:883:21:815:-60.4299,0,-66.5443 dDocent_Contig_6526 8 . G A 252.762 . AB=0.888889;ABP=14.8328;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=49;DPB=49;DPRA=1.03125;EPP=5.18177;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.333333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=346;QR=1519;RO=40;RPL=0;RPP=22.5536;RPPR=89.8692;RPR=9;RUN=1;SAF=6;SAP=5.18177;SAR=3;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:611:0:0:0,-4.81648,-55.3287 0/1:9:1,8:1:29:8:307:-25.2816,0,-0.190386 0/0:24:23,1:23:879:1:39:0,-3.32816,-75.5322 dDocent_Contig_6527 15 . C G 672.428 . AB=0.565217;ABP=3.86001;AC=1;AF=0.25;AN=4;AO=13;CIGAR=4M1X1M;DP=42;DPB=53.5;DPRA=0;EPP=31.2394;EPPR=33.4109;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=2;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=502;QR=540;RO=14;RPL=0;RPP=31.2394;RPPR=33.4109;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:19:9,10,0,0:9:339:10,0,0:393,0,0:-30.0071,0,-25.1426,-32.7164,-28.1529,-60.4852,-32.7164,-28.1529,-60.4852,-60.4852 .:.:.:.:.:.:.:. 0|1:23:5,2,3,13:5:201:2,3,13:81,106,502:-39.7305,-34.5532,-50.5219,-33.2814,-43.1685,-48.946,0,-9.90051,-8.6437,-12.6724 dDocent_Contig_6528 48 . A G 69.4204 . AB=0.2;ABP=18.6449;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=36;DPB=36;DPRA=0;EPP=13.8677;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=1221;RO=31;RPL=0;RPP=13.8677;RPPR=70.3259;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:4:2,2:2:76:2:79:-6.29312,0,-6.01069 0/0:16:15,1:15:594:1:38:0,-1.01921,-49.9989 0/1:16:14,2:14:551:2:82:-2.9632,0,-45.1135 dDocent_Contig_6529 17 . A C 779.694 . AB=0.619048;ABP=8.18047;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X;DP=42;DPB=42;DPRA=0;EPP=59.4686;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=58.5385;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.9375;PAO=0;PQA=0;PQR=0;PRO=0;QA=1055;QR=616;RO=16;RPL=0;RPP=59.4686;RPPR=37.7539;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:3,5:3:115:5:204:-16.3358,0,-8.31586 0/1:20:5,15:5:196:15:605:-47.0446,0,-11.9939 0/1:14:8,6:8:305:6:246:-18.3057,0,-23.5868 dDocent_Contig_6530 23 . T C 857.636 . AB=0.372093;ABP=15.2311;AC=3;AF=0.5;AN=6;AO=32;CIGAR=1X;DP=86;DPB=86;DPRA=0;EPP=72.4974;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.9375;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1270;QR=2074;RO=54;RPL=0;RPP=72.4974;RPPR=120.27;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:30,14:30:1143:14:547:-36.3252,0,-89.921 0/1:13:9,4:9:348:4:161:-10.9621,0,-27.7646 0/1:29:15,14:15:583:14:562:-42.193,0,-44.0823 dDocent_Contig_6531 8 . G A 225.263 . AB=0.533333;ABP=3.15506;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=74;DPB=74;DPRA=0.508475;EPP=20.3821;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=310;QR=2488;RO=65;RPL=0;RPP=20.3821;RPPR=144.156;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:36:36,0:36:1372:0:0:0,-10.8371,-123.765 0/1:15:7,8:7:269:8:310:-23.7481,0,-20.0587 0/0:23:22,0:22:847:0:0:0,-6.62266,-76.1638 dDocent_Contig_6532 98 . N T 65.5698 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_6533 8 . G T 140.395 . AB=0.259259;ABP=16.6021;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=61;DPB=61;DPRA=1.58824;EPP=18.2106;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.888889;PAO=0;PQA=0;PQR=0;PRO=0;QA=256;QR=2027;RO=54;RPL=0;RPP=18.2106;RPPR=120.27;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:665:0:0:0,-5.41854,-60.176 0/0:16:16,0:16:593:0:0:0,-4.81648,-53.7043 0/1:27:20,7:20:769:7:256:-15.2614,0,-61.4106 dDocent_Contig_6534 16 . C G 392.853 . AB=0.4;ABP=6.05036;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=97;DPB=97;DPRA=1.12903;EPP=33.4109;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=560;QR=3328;RO=83;RPL=0;RPP=33.4109;RPPR=183.243;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:21,14:21:834:14:560:-40.2061,0,-64.8376 0/0:38:38,0:38:1518:0:0:0,-11.4391,-136.865 0/0:24:24,0:24:976:0:0:0,-7.22472,-88.1362 dDocent_Contig_6535 98 . N A 286.888 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=22.5536;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=9.4572;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=315;QR=0;RO=0;RPL=9;RPP=22.5536;RPPR=0;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:9:0,9:0:0:9:315:-28.6888,-2.70927,0 dDocent_Contig_6536 74 . C G 208.546 . AB=0.243902;ABP=26.3669;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=41;DPB=41;DPRA=0;EPP=24.725;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=397;QR=1182;RO=31;RPL=10;RPP=24.725;RPPR=70.3259;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:4,6:4:156:6:240:-18.9654,0,-11.4054 0/1:13:11,2:11:427:2:79:-3.58424,0,-34.8679 0/1:18:16,2:16:599:2:78:-1.98493,0,-48.8213 dDocent_Contig_6537 14 . A C 171.792 . AB=0.333333;ABP=5.9056;AC=3;AF=0.5;AN=6;AO=6;CIGAR=2X;DP=40;DPB=40;DPRA=0.269231;EPP=16.0391;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=50.8333;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=235;QR=1299;RO=33;RPL=0;RPP=16.0391;RPPR=74.6689;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:78:-7.25734,-0.60206,0 0|1:12:8,4:8:312:4:157:-10.8412,0,-24.8308 0|0:26:25,0:25:987:0:0:0,-7.52575,-89.0175 dDocent_Contig_6538 7 . A T 149.032 . AB=0.0507614;ABP=348.341;AC=0;AF=0;AN=6;AO=14;CIGAR=2X;DP=272;DPB=272;DPRA=0;EPP=33.4109;EPPR=436.125;GTI=0;LEN=1;MEANALT=3.33333;MQM=42;MQMR=57.8447;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.219178;PAO=0;PQA=0;PQR=0;PRO=0;QA=531;QR=8306;RO=219;RPL=0;RPP=33.4109;RPPR=478.563;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=214;SRP=436.125;SRR=5;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:106:83,6,7,10:83:3152:6,7,10:223,249,387:-6.8179,-14.2569,-270.573,-11.5497,-252.121,-267.563,0,-240.588,-237.879,-255.127 0|0:91:72,4,5,10:72:2693:4,5,10:155,191,391:-10.4041,-19.9427,-238.588,-16.656,-224.368,-235.001,0,-207.721,-204.435,-216.849 0|0:75:64,4,2,4:64:2461:4,2,4:153,78,152:0,-7.26335,-205.964,-12.863,-200.77,-212.17,-6.79261,-194.703,-200.306,-205.5 dDocent_Contig_6539 149 . T C 278.154 . AB=0.354839;ABP=8.68415;AC=2;AF=0.5;AN=4;AO=11;CIGAR=1X;DP=31;DPB=31;DPRA=0;EPP=26.8965;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=432;QR=806;RO=20;RPL=0;RPP=26.8965;RPPR=46.4397;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:6,9:6:242:9:350:-27.3412,0,-17.6419 0/1:16:14,2:14:564:2:82:-2.9632,0,-46.2867 ./.:.:.:.:.:.:.:. dDocent_Contig_6540 18 . G C 130.116 . AB=0.25;ABP=16.0391;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=102;DPB=102;DPRA=1.25862;EPP=18.2106;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=270;QR=3680;RO=95;RPL=0;RPP=18.2106;RPPR=209.3;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:18,6:18:702:6:231:-13.9324,0,-56.2778 0/0:49:48,1:48:1860:1:39:0,-10.8539,-163.717 0/0:29:29,0:29:1118:0:0:0,-8.72987,-100.899 dDocent_Contig_6541 17 . C T 801.575 . AB=0.360656;ABP=13.2981;AC=5;AF=0.833333;AN=6;AO=22;CIGAR=1X1M;DP=61;DPB=61;DPRA=0;EPP=50.7827;EPPR=48.6112;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=859;QR=822;RO=21;RPL=0;RPP=50.7827;RPPR=48.6112;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:31:15,10,6:15:580:10,6:383,221:-26.9187,0,-44.6385,-13.3745,-29.5889,-59.2062 1|1:23:6,7,10:6:242:7,10:273,400:-33.6276,-12.9986,-30.8411,-2.47752,0,-19.4218 1|1:7:0,1,6:0:0:1,6:40,238:-23.283,-19.9875,-19.6864,-3.69465,0,-1.88847 dDocent_Contig_6542 23 . G A 89.5329 . AB=0.217391;ABP=18.9659;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=120;DPB=120;DPRA=0;EPP=18.2106;EPPR=248.387;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=268;QR=4492;RO=113;RPL=0;RPP=18.2106;RPPR=248.387;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=113;SRP=248.387;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:50:49,1:49:1940:1:41:0,-10.9569,-170.707 0/1:23:18,5:18:725:5:186:-10.1751,0,-58.6507 0/0:47:46,1:46:1827:1:41:0,-10.0538,-160.536 dDocent_Contig_6543 13 . G C 52.5742 . AB=0.116279;ABP=112.998;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=176;DPB=176;DPRA=1.91111;EPP=24.725;EPPR=361.303;GTI=0;LEN=1;MEANALT=1;MQM=54.6;MQMR=45.2788;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.969697;PAO=0;PQA=0;PQR=0;PRO=0;QA=390;QR=6280;RO=165;RPL=0;RPP=24.725;RPPR=361.303;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=165;SRP=361.303;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:47:46,0:46:1738:0:0:0,-13.8474,-146.411 0/0:43:43,0:43:1639:0:0:0,-12.9443,-141.421 0/1:86:76,10:76:2903:10:390:-6.47927,0,-223.144 dDocent_Contig_6544 13 . G A 33.9778 . AB=0.101449;ABP=98.2089;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=207;DPB=207;DPRA=1;EPP=18.2106;EPPR=428.662;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.99;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=7587;RO=200;RPL=0;RPP=18.2106;RPPR=437.305;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=199;SRP=428.662;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:86:86,0:86:3212:0:0:0,-25.8886,-289.241 0/1:69:62,7:62:2355:7:278:-4.61946,0,-191.387 0/0:52:52,0:52:2020:0:0:0,-15.6536,-182.021 dDocent_Contig_6546 39 . C T 43.0489 . AB=0.109375;ABP=87.8334;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=217;DPB=217;DPRA=0;EPP=24.725;EPPR=450.334;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=59.3932;NS=3;NUMALT=1;ODDS=0;PAIRED=0.7;PAIREDR=0.737864;PAO=0;PQA=0;PQR=0;PRO=0;QA=390;QR=8216;RO=206;RPL=0;RPP=24.725;RPPR=450.334;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=206;SRP=450.334;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:56,7:56:2226:7:269:-5.22569,0,-177.929 0/0:88:87,1:87:3461:1:40:0,-22.495,-307.538 0/0:65:63,2:63:2529:2:81:0,-11.8812,-220.055 dDocent_Contig_6547 21 . T A 944.999 . AB=0.295775;ABP=54.4528;AC=3;AF=0.5;AN=6;AO=42;CIGAR=1X;DP=142;DPB=142;DPRA=0;EPP=94.2121;EPPR=220.158;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1555;QR=3804;RO=100;RPL=0;RPP=94.2121;RPPR=220.158;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:38,19:38:1432:19:678:-44.1764,0,-112 0/1:46:37,9:37:1424:9:340:-17.1064,0,-114.591 0/1:39:25,14:25:948:14:537:-36.9337,0,-73.8917 dDocent_Contig_6548 36 . G C 84.1817 . AB=0.222222;ABP=15.074;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=31;DPB=31;DPRA=2.76923;EPP=11.6962;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.777778;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=1045;RO=27;RPL=0;RPP=11.6962;RPPR=61.6401;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:268:0:0:0,-2.10721,-24.4791 0/1:18:14,4:14:548:4:163:-9.63989,0,-44.2439 0/0:6:6,0:6:229:0:0:0,-1.80618,-20.9734 dDocent_Contig_6549 77 . T C 517.578 . AB=0.338028;ABP=19.1893;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1M1X3M;DP=71;DPB=69.8;DPRA=0;EPP=55.1256;EPPR=100.727;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=840;QR=1517;RO=45;RPL=24;RPP=55.1256;RPPR=100.727;RPR=0;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:27:17,0,10:17:560:0,10:0,340:-22.7914,-27.909,-73.1669,0,-45.5938,-42.5835 0|1:20:10,0,10:10:343:0,10:0,353:-26.0885,-29.0988,-56.9413,0,-28.1903,-25.18 0|1:24:18,2,4:18:614:2,4:75,147:-6.59462,-5.86738,-55.0648,0,-43.644,-48.5865 dDocent_Contig_6551 18 . G C 3090.98 . AB=0.694118;ABP=30.8307;AC=4;AF=0.666667;AN=6;AO=94;CIGAR=1X;DP=121;DPB=121;DPRA=0;EPP=207.129;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.989362;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3781;QR=1088;RO=27;RPL=0;RPP=207.129;RPPR=61.6401;RPR=94;RUN=1;SAF=94;SAP=207.129;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:36:1,35:1:41:35:1397:-121.895,-6.74251,0 0/1:41:6,35:6:245:35:1406:-114.452,0,-10.0872 0/1:44:20,24:20:802:24:978:-75.0697,0,-59.2505 dDocent_Contig_6552 27 . C A 699.765 . AB=0.446429;ABP=4.40625;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=56;DPB=56;DPRA=0;EPP=57.2971;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.967742;PAO=0;PQA=0;PQR=0;PRO=0;QA=994;QR=1234;RO=31;RPL=0;RPP=57.2971;RPPR=70.3259;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:3,3:3:121:3:117:-9.10403,0,-9.47402 0/1:26:15,11:15:597:11:435:-31.6781,0,-46.2417 0/1:24:13,11:13:516:11:442:-32.9111,0,-39.559 dDocent_Contig_6554 17 . T C 430.236 . AB=0.208333;ABP=20.744;AC=2;AF=0.333334;AN=6;AO=5;CIGAR=1X1M;DP=78;DPB=78;DPRA=1.2;EPP=13.8677;EPPR=124.613;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=2194;RO=56;RPL=0;RPP=13.8677;RPPR=124.613;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:24:14,5,5:14:554:5,5:190,198:-12.0902,-0.73259,-44.8215,0,-30.03,-44.1007 0|1:34:22,12,0:22:851:12,0:479,0:-33.2262,0,-66.6691,-39.8489,-70.2815,-109.736 0|0:20:20,0,0:20:789:0,0:0,0:0,-6.0206,-71.3283,-6.0206,-71.3283,-71.3283 dDocent_Contig_6555 28 . T A 40.611 . AB=0.15;ABP=24.2907;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=61;DPB=61;DPRA=0;EPP=13.8677;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=190;QR=2213;RO=56;RPL=0;RPP=13.8677;RPPR=124.613;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:17,3:17:671:3:118:-4.9816,0,-54.7026 0/0:23:22,1:22:885:1:31:0,-3.82424,-76.8605 0/0:18:17,1:17:657:1:41:0,-1.32397,-55.3604 dDocent_Contig_6556 16 . T A 50.6447 . AB=0.148148;ABP=32.0437;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=80;DPB=80;DPRA=1.01887;EPP=11.6962;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=2973;RO=76;RPL=0;RPP=11.6962;RPPR=168.042;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:972:0:0:0,-7.52575,-87.7775 0/0:28:28,0:28:1085:0:0:0,-8.42884,-97.9396 0/1:27:23,4:23:916:4:156:-6.28631,0,-74.6202 dDocent_Contig_6557 7 . A G 1161.87 . AB=0.171053;ABP=74.4403;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X3M;DP=76;DPB=76;DPRA=0;EPP=31.2394;EPPR=24.725;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0.769231;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=461;QR=369;RO=10;RPL=0;RPP=31.2394;RPPR=24.725;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=10;SRP=24.725;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:39:5,4,22,4,4:5:179:4,22,4,4:147,765,146,160:-59.4951,-49.0321,-62.4244,0,-2.62522,-7.96748,-49.07,-51.6983,-2.66332,-62.4623,-47.8138,-50.4422,-1.40108,-50.4802,-61.2068 0|1:18:5,0,5,6,1:5:190:0,5,6,1:0,184,199,41:-14.5668,-16.0719,-31.6614,-1.01857,-16.6142,-15.1091,0,-15.5851,-0.546207,-13.7789,-12.6832,-28.2745,-13.2259,-12.198,-27.9735 1|0:19:0,0,11,3,4:0:0:0,11,3,4:0,401,116,159:-45.7847,-45.7847,-45.7847,-13.0955,-13.0955,-9.78417,-36.2544,-36.2544,-3.5707,-35.3513,-32.6885,-32.6885,0,-23.1561,-31.4843 dDocent_Contig_6558 55 . G A 388.117 . AB=0.253731;ABP=38.3048;AC=2;AF=0.5;AN=4;AO=17;CIGAR=1X;DP=67;DPB=67;DPRA=0;EPP=39.9253;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=675;QR=1947;RO=50;RPL=17;RPP=39.9253;RPPR=111.584;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:10,7:10:398:7:272:-19.7282,0,-31.0622 0/1:50:40,10:40:1549:10:403:-21.5784,0,-124.605 ./.:.:.:.:.:.:.:. dDocent_Contig_6559 21 . A C 189.04 . AB=0.411765;ABP=4.1599;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=28;DPB=28;DPRA=0.772727;EPP=18.2106;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=284;QR=830;RO=21;RPL=0;RPP=18.2106;RPPR=48.6112;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:434:0:0:0,-3.31133,-39.412 0/1:7:3,4:3:115:4:161:-12.7683,0,-8.616 0/1:10:7,3:7:281:3:123:-8.45449,0,-22.6519 dDocent_Contig_6562 100 . N T 91.465 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=3X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.29832;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=98;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:3:0,3:0:0:3:98:-9.14433,-0.90309,0 dDocent_Contig_6563 27 . C T 84.1573 . AB=0.222222;ABP=15.074;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X2M1X1M;DP=71;DPB=71;DPRA=0.857143;EPP=11.6962;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=2423;RO=64;RPL=0;RPP=11.6962;RPPR=141.985;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:32:29,0,3:29:1092:0,3:0,120:-1.55435,-10.2842,-99.7395,0,-89.8526,-88.9496 0|0:21:21,0,0:21:805:0,0:0,0:0,-6.32163,-72.7728,-6.32163,-72.7728,-72.7728 0|1:18:14,4,0:14:526:4,0:157,0:-9.08935,0,-42.2594,-13.3038,-43.4636,-56.3789 dDocent_Contig_6564 111 . C G 136.335 . AB=0.285714;ABP=14.1779;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=111;DPB=111;DPRA=0;EPP=29.068;EPPR=215.815;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=388;QR=3159;RO=98;RPL=0;RPP=29.068;RPPR=215.815;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=215.815;SRR=98;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:19,8:19:551:8:250:-14.5543,0,-41.6286 0/0:59:56,3:56:1843:3:104:0,-8.05768,-156.441 0/0:24:23,1:23:765:1:34:0,-3.82581,-65.7587 dDocent_Contig_6565 4 . T C 72.1059 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X10I2M1X2M1X;DP=3;DPB=8.42857;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=29.6667;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=2;PQA=76;PQR=38;PRO=1;QA=111;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:1:0,1:0:0:1:37:-3.30518,-0.30103,0 1|1:2:0,2:0:0:2:74:-3.59776,-0.60206,0 .:.:.:.:.:.:.:. dDocent_Contig_6566 71 . C T 104.219 . AB=0.3125;ABP=7.89611;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=31;DPB=31;DPRA=2.13333;EPP=13.8677;EPPR=51.1168;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.1154;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.884615;PAO=0;PQA=0;PQR=0;PRO=0;QA=179;QR=932;RO=26;RPL=5;RPP=13.8677;RPPR=59.4686;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=25;SRP=51.1168;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:172:0:0:0,-1.50515,-15.8175 0/1:16:11,5:11:399:5:179:-11.6436,0,-29.0748 0/0:10:10,0:10:361:0:0:0,-3.0103,-32.8341 dDocent_Contig_6567 28 . A T 55.1401 . AB=0.333333;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=23;DPB=23;DPRA=1.28571;EPP=9.52472;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.8;PAO=0;PQA=0;PQR=0;PRO=0;QA=98;QR=773;RO=20;RPL=0;RPP=9.52472;RPPR=46.4397;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:6,3:6:238:3:98:-6.43446,0,-19.0845 0/0:10:10,0:10:385:0:0:0,-3.0103,-35.0009 0/0:4:4,0:4:150:0:0:0,-1.20412,-13.8615 dDocent_Contig_6568 65 . G A 440.689 . AB=0.25;ABP=59.4686;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X;DP=104;DPB=104;DPRA=0;EPP=59.4686;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.961538;PAO=0;PQA=0;PQR=0;PRO=0;QA=868;QR=2554;RO=78;RPL=26;RPP=59.4686;RPPR=172.385;RPR=0;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:28,12:28:887:12:404:-24.6428,0,-68.0805 0/1:36:29,7:29:950:7:233:-10.4584,0,-74.9661 0/1:28:21,7:21:717:7:231:-12.6844,0,-56.4202 dDocent_Contig_6569 13 . A T 159.211 . AB=0.241379;ABP=19.8579;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=61;DPB=61;DPRA=1.8125;EPP=18.2106;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=280;QR=2181;RO=54;RPL=0;RPP=18.2106;RPPR=120.27;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:22,7:22:887:7:280:-16.8419,0,-71.4087 0/0:11:11,0:11:443:0:0:0,-3.31133,-40.2259 0/0:21:21,0:21:851:0:0:0,-6.32163,-76.9019 dDocent_Contig_6571 8 . G C 280.678 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=37;DPB=37;DPRA=5.66667;EPP=26.8965;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.846154;PAO=0;PQA=0;PQR=0;PRO=0;QA=423;QR=997;RO=26;RPL=0;RPP=26.8965;RPPR=59.4686;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:10,10:10:385:10:385:-28.9857,0,-28.9853 0/0:14:13,1:13:495:1:38:0,-0.417151,-41.0997 0/0:3:3,0:3:117:0:0:0,-0.90309,-10.9104 dDocent_Contig_6572 24 . C T 136.04 . AB=0.333333;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=67;DPB=67;DPRA=0.734694;EPP=16.0391;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=221;QR=2392;RO=61;RPL=0;RPP=16.0391;RPPR=135.47;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:993:0:0:0,-7.52575,-89.67 0/1:18:12,6:12:467:6:221:-14.8258,0,-36.9611 0/0:24:24,0:24:932:0:0:0,-7.22472,-84.1771 dDocent_Contig_6573 51 . G T 52.1631 . AB=0.181818;ABP=22.3561;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=40;DPB=40;DPRA=2.44444;EPP=11.6962;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.888889;PAO=0;PQA=0;PQR=0;PRO=0;QA=138;QR=1208;RO=36;RPL=4;RPP=11.6962;RPPR=3.9754;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=20;SRP=3.9754;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:18,4:18:606:4:138:-6.13676,0,-48.2338 0/0:14:14,0:14:466:0:0:0,-4.21442,-42.2592 0/0:4:4,0:4:136:0:0:0,-1.20412,-12.5759 dDocent_Contig_6574 13 . C A 51.1241 . AB=0.128205;ABP=49.8362;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=93;DPB=93;DPRA=1.4375;EPP=16.0391;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=55.3333;MQMR=57.6897;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.873563;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=3420;RO=87;RPL=0;RPP=16.0391;RPPR=191.928;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:942:0:0:0,-7.22472,-83.9385 0/0:30:29,1:29:1143:1:40:0,-5.03522,-95.0413 0/1:39:34,5:34:1335:5:198:-6.33426,0,-108.622 dDocent_Contig_6575 12 . G A 1009.81 . AB=0.0339912;ABP=1723.28;AC=2;AF=0.333333;AN=6;AO=34;CIGAR=1X2M1X;DP=1181;DPB=1181;DPRA=0;EPP=76.8404;EPPR=2109.34;GTI=0;LEN=1;MEANALT=7;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.997938;PAO=0;PQA=0;PQR=0;PRO=0;QA=1317;QR=37401;RO=970;RPL=0;RPP=76.8404;RPPR=2109.34;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=970;SRP=2109.34;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:372:305,31,20:305:11682:31,20:1230,770:-9.46269,0,-949.386,-38.0515,-895.499,-990.732 0|0:269:230,19,3:230:8866:19,3:753,114:0,-7.76166,-730.124,-59.8867,-726.495,-787.032 0|1:540:435,70,11:435:16853:70,11:2737,433:-93.8369,0,-1363.35,-189.165,-1348.8,-1570.27 dDocent_Contig_6576 73 . A G 35.0816 . AB=0.25;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=31;DPB=31;DPRA=0.695652;EPP=7.35324;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=72;QR=1122;RO=29;RPL=2;RPP=7.35324;RPPR=65.983;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:6,2:6:234:2:72:-4.42848,0,-19.0211 0/0:4:4,0:4:159:0:0:0,-1.20412,-14.6923 0/0:19:19,0:19:729:0:0:0,-5.71957,-65.9356 dDocent_Contig_6577 9 . A C 84.3318 . AB=0.162162;ABP=39.6906;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=153;DPB=153;DPRA=0.637931;EPP=16.0391;EPPR=322.217;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=227;QR=5536;RO=147;RPL=0;RPP=16.0391;RPPR=322.217;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=147;SRP=322.217;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:45:45,0:45:1684:0:0:0,-13.5463,-151.825 0/1:37:31,6:31:1152:6:227:-9.65503,0,-92.8388 0/0:71:71,0:71:2700:0:0:0,-21.3731,-243.192 dDocent_Contig_6578 10 . C A 2032.89 . AB=0.0666667;ABP=51.9408;AC=0;AF=0;AN=6;AO=2;CIGAR=2M1X9M1I3M1X4M;DP=120;DPB=119.5;DPRA=0;EPP=7.35324;EPPR=85.5263;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=1482;RO=38;RPL=0;RPP=7.35324;RPPR=85.5263;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:30:6,0,2,19:6:226:0,2,19:0,77,729:-58.0559,-59.862,-78.3802,-53.5389,-72.0574,-71.4553,0,-18.5408,-12.2125,-12.8212 0|0:29:12,5,0,11:12:470:5,0,11:199,0,416:-30.4941,-17.7104,-54.8679,-34.1064,-56.3731,-72.7623,0,-22.2754,-38.667,-35.3557 0|0:61:20,0,0,38:20:786:0,0,38:0,0,1512:-118.456,-124.476,-189.123,-124.476,-189.123,-189.123,0,-64.6342,-64.6342,-53.1951 dDocent_Contig_6579 53 . C T 284.254 . AB=0.40625;ABP=5.45321;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=44;DPB=44;DPRA=1.33333;EPP=31.2394;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=441;QR=1221;RO=31;RPL=13;RPP=31.2394;RPPR=70.3259;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:6,10:6:225:10:326:-24.8361,0,-15.7921 0/0:12:12,0:12:477:0:0:0,-3.61236,-43.2816 0/1:16:13,3:13:519:3:115:-5.908,0,-42.2396 dDocent_Contig_6580 158 . A C 1286.29 . AB=0.666667;ABP=21.1059;AC=3;AF=0.5;AN=6;AO=50;CIGAR=1X;DP=75;DPB=75;DPRA=0;EPP=111.584;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1711;QR=914;RO=25;RPL=50;RPP=111.584;RPPR=57.2971;RPR=0;RUN=1;SAF=0;SAP=111.584;SAR=50;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:7,5:7:259:5:162:-11.2874,0,-20.0519 0/1:29:9,20:9:318:20:732:-57.4754,0,-20.2274 0/1:34:9,25:9:337:25:817:-63.5833,0,-20.4457 dDocent_Contig_6581 7 . A C 34.1909 . AB=0.127273;ABP=69.3784;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=156;DPB=156;DPRA=1.08911;EPP=18.2106;EPPR=324.388;GTI=0;LEN=1;MEANALT=1;MQM=52.7143;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.857143;PAIREDR=0.993243;PAO=0;PQA=0;PQR=0;PRO=0;QA=262;QR=5624;RO=148;RPL=0;RPP=18.2106;RPPR=324.388;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=148;SRP=324.388;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:64:63,0:63:2413:0:0:0,-18.9649,-217.098 0/1:55:48,7:48:1816:7:262:-4.64078,0,-147.139 0/0:37:37,0:37:1395:0:0:0,-11.1381,-125.832 dDocent_Contig_6583 14 . C T 81.3306 . AB=0.210526;ABP=16.8392;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=65;DPB=65;DPRA=0.826087;EPP=11.6962;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=58.25;MQMR=49.7705;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.786885;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=2431;RO=61;RPL=0;RPP=11.6962;RPPR=135.47;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:15,4:15:602:4:160:-9.05388,0,-44.6346 0/0:15:15,0:15:603:0:0:0,-4.51545,-42.2005 0/0:31:31,0:31:1226:0:0:0,-9.33193,-95.1654 dDocent_Contig_6586 24 . G C 2645.73 . AB=0.601399;ABP=15.781;AC=3;AF=0.5;AN=6;AO=86;CIGAR=1X;DP=143;DPB=143;DPRA=0;EPP=189.757;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.982456;PAO=0;PQA=0;PQR=0;PRO=0;QA=3450;QR=2262;RO=57;RPL=0;RPP=189.757;RPPR=126.784;RPR=86;RUN=1;SAF=86;SAP=189.757;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:27,18:27:1072:18:731:-52.5683,0,-83.2213 0/1:52:14,38:14:562:38:1524:-121.749,0,-35.2687 0/1:46:16,30:16:628:30:1195:-93.9728,0,-42.9957 dDocent_Contig_6587 7 . A G 135.521 . AB=0.169231;ABP=64.7803;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=197;DPB=197;DPRA=0.868056;EPP=31.2394;EPPR=402.561;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=456;QR=6956;RO=184;RPL=0;RPP=31.2394;RPPR=402.561;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=184;SRP=402.561;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:72:72,0:72:2703:0:0:0,-21.6742,-243.473 0/1:65:54,11:54:2031:11:378:-14.7739,0,-163.464 0/0:60:58,2:58:2222:2:78:0,-10.6583,-192.798 dDocent_Contig_6590 10 . A C 164.508 . AB=0.209302;ABP=34.5724;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=43;DPB=43;DPRA=0;EPP=22.5536;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.911765;PAO=0;PQA=0;PQR=0;PRO=0;QA=355;QR=1327;RO=34;RPL=0;RPP=22.5536;RPPR=76.8404;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:17,5:17:646:5:193:-11.117,0,-51.8481 0/1:13:11,2:11:441:2:81:-3.77234,0,-36.1316 0/1:8:6,2:6:240:2:81:-5.27749,0,-19.5672 dDocent_Contig_6592 8 . G T 334.355 . AB=0.325581;ABP=14.3727;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=60;DPB=60;DPRA=1.26471;EPP=33.4109;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=533;QR=1765;RO=46;RPL=0;RPP=33.4109;RPPR=102.898;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:10,11:10:386:11:417:-31.559,0,-28.7754 0/0:17:17,0:17:655:0:0:0,-5.11751,-59.2871 0/1:22:19,3:19:724:3:116:-4.19504,0,-58.8676 dDocent_Contig_6593 78 . A G 132.95 . AB=0.291667;ABP=12.0581;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=25;DPB=25;DPRA=12;EPP=18.2106;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=246;QR=642;RO=18;RPL=7;RPP=18.2106;RPPR=42.0968;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:5,2:5:177:2:71:-4.63485,0,-14.1698 0/1:17:12,5:12:431:5:175:-10.9758,0,-34.0118 0/0:1:1,0:1:34:0:0:0,-0.30103,-3.39891 dDocent_Contig_6594 16 . C G 177.029 . AB=0.214286;ABP=12.937;AC=3;AF=0.5;AN=6;AO=6;CIGAR=1X;DP=22;DPB=22;DPRA=1.7;EPP=16.0391;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=632;RO=16;RPL=0;RPP=16.0391;RPPR=37.7539;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:11,3:11:432:3:122:-7.15807,0,-35.014 0/0:5:5,0:5:200:0:0:0,-1.50515,-18.3795 1/1:3:0,3:0:0:3:123:-11.4648,-0.90309,0 dDocent_Contig_6595 39 . T C 900.795 . AB=0.588235;ABP=6.45911;AC=3;AF=0.5;AN=6;AO=30;CIGAR=1X;DP=51;DPB=51;DPRA=0;EPP=68.1545;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1201;QR=850;RO=21;RPL=0;RPP=68.1545;RPPR=48.6112;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:10,6:10:404:6:238:-16.9753,0,-31.903 0/1:24:3,21:3:121:21:848:-69.4082,0,-4.05527 0/1:11:8,3:8:325:3:115:-7.41245,0,-26.3077 dDocent_Contig_6596 14 . A G 308.734 . AB=0.55;ABP=3.44459;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=48;DPB=48;DPRA=0.357143;EPP=26.8965;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.727273;PAIREDR=0.864865;PAO=0;PQA=0;PQR=0;PRO=0;QA=426;QR=1463;RO=37;RPL=0;RPP=26.8965;RPPR=83.3548;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:1097:0:0:0,-8.42884,-99.0188 0/1:9:1,8:1:41:8:308:-25.3663,0,-1.3853 0/1:11:8,3:8:325:3:118:-7.69139,0,-26.3081 dDocent_Contig_6597 12 . G C 253.861 . AB=0.344828;ABP=9.07545;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=29;DPB=29;DPRA=0;EPP=24.725;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=397;QR=742;RO=19;RPL=0;RPP=24.725;RPPR=44.2683;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:7,5:7:276:5:197:-14.4931,0,-21.5967 0/1:12:11,1:11:425:1:41:-0.482207,0,-34.9881 0/1:5:1,4:1:41:4:159:-13.1857,0,-2.58942 dDocent_Contig_6598 15 . T C 33.4673 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=2X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=12;MQMR=0;NS=1;NUMALT=1;ODDS=5.29832;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=97;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:3:0,3:0:0:3:97:-3.34437,-0.90309,0 .:.:.:.:.:.:.:. dDocent_Contig_6599 13 . T C 101.303 . AB=0.142857;ABP=26.2761;AC=2;AF=0.333334;AN=6;AO=5;CIGAR=1X2M;DP=61;DPB=61;DPRA=0;EPP=13.8677;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=47;MQMR=59.4615;NS=3;NUMALT=2;ODDS=0;PAIRED=0.8;PAIREDR=0.961538;PAO=0;PQA=0;PQR=0;PRO=0;QA=177;QR=2015;RO=52;RPL=0;RPP=13.8677;RPPR=115.927;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:21:18,0,3:18:689:0,3:0,95:-2.0253,-7.44384,-64.0541,0,-56.9204,-56.0173 0|1:14:10,4,0:10:401:4,0:158,0:-10.3861,0,-32.2356,-13.3964,-33.4397,-46.4398 0|0:26:24,0,2:24:925:0,2:0,82:0,-7.22472,-82.961,-0.0471021,-76.1909,-75.5888 dDocent_Contig_6600 169 . T C 190.044 . AB=0.333333;ABP=8.80089;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=35;DPB=35;DPRA=1.09091;EPP=20.3821;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=309;QR=1079;RO=27;RPL=8;RPP=20.3821;RPPR=61.6401;RPR=0;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:8,3:8:326:3:111:-7.03916,0,-26.3985 0/1:13:8,5:8:311:5:198:-14.284,0,-24.4393 0/0:11:11,0:11:442:0:0:0,-3.31133,-40.1355 dDocent_Contig_6601 26 . T A 235.194 . AB=0.272727;ABP=22.751;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X2M1X;DP=44;DPB=44;DPRA=0;EPP=3.0103;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.78125;PAO=0;PQA=0;PQR=0;PRO=0;QA=476;QR=1221;RO=32;RPL=0;RPP=29.068;RPPR=72.4974;RPR=12;RUN=1;SAF=6;SAP=3.0103;SAR=6;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:11:5,6:5:190:6:238:-16.762,0,-14.1549 0|1:25:21,4:21:798:4:158:-5.93869,0,-64.6139 0|1:8:6,2:6:233:2:80:-4.53527,0,-18.9317 dDocent_Contig_6602 32 . G T 572.099 . AB=0.388889;ABP=8.80089;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X;DP=54;DPB=54;DPRA=0;EPP=48.6112;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=845;QR=1296;RO=33;RPL=0;RPP=48.6112;RPPR=74.6689;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:15,2:15:580:2:82:-2.66217,0,-47.4193 0/1:17:3,14:3:113:14:561:-45.7154,0,-5.41941 0/1:20:15,5:15:603:5:202:-12.5413,0,-48.5885 dDocent_Contig_6603 115 . G A 379.787 . AB=0.307692;ABP=11.3621;AC=3;AF=0.5;AN=6;AO=14;CIGAR=2X;DP=32;DPB=32;DPRA=0;EPP=33.4109;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=483;QR=445;RO=13;RPL=0;RPP=33.4109;RPPR=31.2394;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=31.2394;SRR=13;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:7,6,2:7:243:6,2:203,52:-14.4093,0,-18.0162,-12.4594,-15.7651,-31.6167 0|0:11:6,2,3:6:202:2,3:70,104:-6.64529,-2.75467,-18.5141,0,-10.6593,-15.4551 1|1:6:0,6,0:0:0:6,0:210,0:-19.2425,-1.80618,0,-19.2425,-1.80618,-19.2425 dDocent_Contig_6604 30 . T A 236.917 . AB=0.20339;ABP=48.096;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=94;DPB=94;DPRA=0.842857;EPP=29.068;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=478;QR=3031;RO=82;RPL=0;RPP=29.068;RPPR=181.071;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:36,7:36:1327:7:276:-12.2649,0,-106.767 0/1:16:11,5:11:402:5:202:-13.7456,0,-31.7041 0/0:35:35,0:35:1302:0:0:0,-10.536,-117.462 dDocent_Contig_6605 33 . T C 148.821 . AB=0.333333;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=2X1M1X;DP=41;DPB=41;DPRA=1.56522;EPP=16.0391;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=235;QR=1369;RO=35;RPL=0;RPP=16.0391;RPPR=79.0118;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:21:21,0:21:819:0:0:0,-6.32163,-74.028 0|1:18:12,6:12:470:6:235:-16.1026,0,-37.2303 0|0:2:2,0:2:80:0:0:0,-0.60206,-7.59179 dDocent_Contig_6606 150 . C T 88.3672 . AB=0.277778;ABP=10.7311;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=30;DPB=30;DPRA=0.75;EPP=13.8677;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.6;PAIREDR=0.92;PAO=0;PQA=0;PQR=0;PRO=0;QA=174;QR=903;RO=25;RPL=5;RPP=13.8677;RPPR=57.2971;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:6,4:6:216:4:137:-9.65726,0,-16.78 0/0:12:12,0:12:434:0:0:0,-3.61236,-39.4016 0/1:8:7,1:7:253:1:37:-1.28959,0,-20.7115 dDocent_Contig_6608 20 . C T 64.9151 . AB=0.192308;ABP=24.391;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=49;DPB=49;DPRA=2.26087;EPP=13.8677;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.954545;PAO=0;PQA=0;PQR=0;PRO=0;QA=169;QR=1738;RO=44;RPL=0;RPP=13.8677;RPPR=98.5551;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:316:0:0:0,-2.40824,-28.8046 0/1:26:21,5:21:836:5:169:-7.71333,0,-67.7265 0/0:15:15,0:15:586:0:0:0,-4.51545,-53.0723 dDocent_Contig_6610 41 . G A 69.1538 . AB=0.10274;ABP=203.143;AC=1;AF=0.166667;AN=6;AO=21;CIGAR=1X;DP=312;DPB=312;DPRA=2.01613;EPP=48.6112;EPPR=634.909;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.2784;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.250859;PAO=0;PQA=0;PQR=0;PRO=0;QA=802;QR=11157;RO=291;RPL=0;RPP=48.6112;RPPR=634.909;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=291;SRP=634.909;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:104:98,6:98:3745:6:227:0,-10.515,-314.996 0/1:146:131,15:131:5011:15:575:-8.13723,0,-400.575 0/0:62:62,0:62:2401:0:0:0,-18.6639,-216.275 dDocent_Contig_6612 22 . T C 2109.3 . AB=0.747253;ABP=51.3315;AC=3;AF=0.5;AN=6;AO=68;CIGAR=1X1M1X;DP=91;DPB=91;DPRA=0;EPP=150.67;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.869565;PAO=0;PQA=0;PQR=0;PRO=0;QA=2679;QR=908;RO=23;RPL=0;RPP=150.67;RPPR=52.9542;RPR=68;RUN=1;SAF=68;SAP=150.67;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:47:11,36:11:433:36:1396:-111.753,0,-25.1773 0|1:20:7,13:7:276:13:515:-40.6773,0,-19.1889 0|1:24:5,19:5:199:19:768:-62.2163,0,-11.0638 dDocent_Contig_6613 18 . C A 1084.56 . AB=0.567164;ABP=5.63551;AC=3;AF=0.5;AN=6;AO=38;CIGAR=1X;DP=67;DPB=67;DPRA=0;EPP=85.5263;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1459;QR=1141;RO=29;RPL=0;RPP=85.5263;RPPR=65.983;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:9,5:9:364:5:188:-13.0678,0,-28.9103 0/1:43:18,25:18:696:25:959:-73.6721,0,-50.0184 0/1:10:2,8:2:81:8:312:-25.433,0,-4.67543 dDocent_Contig_6615 37 . G C 3176.52 . AB=0.641975;ABP=31.3735;AC=3;AF=0.5;AN=6;AO=104;CIGAR=1X;DP=162;DPB=162;DPRA=0;EPP=228.843;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4104;QR=2300;RO=58;RPL=0;RPP=228.843;RPPR=128.956;RPR=104;RUN=1;SAF=104;SAP=228.843;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:18,27:18:732:27:1064:-82.5029,0,-52.6576 0/1:31:9,22:9:339:22:864:-68.7336,0,-21.5247 0/1:86:31,55:31:1229:55:2176:-170.132,0,-84.9931 dDocent_Contig_6616 17 . T C 391.509 . AB=0.496241;ABP=3.02663;AC=2;AF=0.333333;AN=6;AO=82;CIGAR=1X;DP=208;DPB=208;DPRA=0;EPP=181.071;EPPR=276.616;GTI=0;LEN=1;MEANALT=1;MQM=13.8049;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.0243902;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3262;QR=5050;RO=126;RPL=0;RPP=181.071;RPPR=276.616;RPR=82;RUN=1;SAF=82;SAP=181.071;SAR=0;SRF=126;SRP=276.616;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:68:46,22:46:1851:22:859:-5.0103,0,-146.324 0/1:65:21,44:21:840:44:1764:-36.4593,0,-56.3441 0/0:75:59,16:59:2359:16:639:0,-4.10254,-193.992 dDocent_Contig_6617 20 . A C 903.017 . 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AB=0.444444;ABP=3.25157;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=46;DPB=46;DPRA=0.486486;EPP=11.6962;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=151;QR=1670;RO=42;RPL=0;RPP=11.6962;RPPR=94.2121;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:786:0:0:0,-6.0206,-71.0574 0/0:17:17,0:17:684:0:0:0,-5.11751,-61.8887 0/1:9:5,4:5:200:4:151:-11.2448,0,-15.6703 dDocent_Contig_6620 16 . G T 1331.44 . 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AB=0.555556;ABP=3.49285;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=29;DPB=29;DPRA=3.27273;EPP=24.725;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=378;QR=745;RO=19;RPL=10;RPP=24.725;RPPR=44.2683;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:275:0:0:0,-2.10721,-25.1175 0/0:4:4,0:4:152:0:0:0,-1.20412,-14.0495 0/1:18:8,10:8:318:10:378:-28.9481,0,-23.5661 dDocent_Contig_6626 14 . T A 7396.15 . 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A T 176.536 . AB=0.363636;ABP=4.78696;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=31M1X7M;DP=28;DPB=28.1026;DPRA=2.75;EPP=11.6962;EPPR=37.7539;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=136;QR=562;RO=16;RPL=4;RPP=11.6962;RPPR=37.7539;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:13:7,4,0:7:243:4,0:155,0:-10.7851,0,-18.7021,-12.8923,-19.9062,-32.6662 0|1:11:6,0,4:6:209:0,4:0,136:-9.18582,-10.992,-27.9874,0,-16.9607,-15.7566 0|0:4:3,0,0:3:110:0,0:0,0:0,-0.90309,-9.91503,-0.90309,-9.91503,-9.91503 dDocent_Contig_6628 7 . A G 170.849 . AB=0.217391;ABP=50.8771;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=20.5268;EPPR=42.3836;GTI=0;LEN=1;MEANALT=1.33333;MQM=40.6;MQMR=59.2642;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.735849;PAO=0;PQA=0;PQR=0;PRO=0;QA=499;QR=1952;RO=53;RPL=0;RPP=35.5824;RPPR=118.098;RPR=15;RUN=1;SAF=13;SAP=20.5268;SAR=2;SRF=42;SRP=42.3836;SRR=11;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:23,6:23:807:6:217:-9.72529,0,-63.0167 0/1:18:14,3:14:529:3:83:-1.35804,0,-42.5265 0/1:22:16,6:16:616:6:199:-9.56311,0,-49.1568 dDocent_Contig_6629 18 . T G 31.5024 . AB=0.222222;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X2M2X1M1X;DP=16;DPB=16;DPRA=2.57143;EPP=7.35324;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=38;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=546;RO=14;RPL=0;RPP=7.35324;RPPR=33.4109;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:9:7,2:7:267:2:79:-4.06776,0,-21.6833 0|0:6:6,0:6:239:0:0:0,-1.80618,-21.8852 0|0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 dDocent_Contig_6630 147 . T G 47.7044 . AB=0.4;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=21;DPB=21;DPRA=0.625;EPP=7.35324;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=746;RO=19;RPL=0;RPP=7.35324;RPPR=44.2683;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:200:0:0:0,-1.50515,-18.3795 0/1:5:3,2:3:118:2:79:-5.99209,0,-9.49757 0/0:11:11,0:11:428:0:0:0,-3.31133,-38.8671 dDocent_Contig_6631 20 . T C 123.439 . AB=0.3125;ABP=7.89611;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=25;DPB=25;DPRA=3.55556;EPP=13.8677;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=721;RO=20;RPL=0;RPP=13.8677;RPPR=46.4397;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:298:0:0:0,-2.40824,-27.1737 0/1:16:11,5:11:385:5:200:-13.5629,0,-30.1618 0/0:1:1,0:1:38:0:0:0,-0.30103,-3.79727 dDocent_Contig_6632 25 . G A 127.207 . AB=0.3;ABP=9.95901;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=39;DPB=39;DPRA=0;EPP=18.2106;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=52.2857;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.857143;PAIREDR=0.75;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=1267;RO=32;RPL=0;RPP=18.2106;RPPR=72.4974;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=28;SRP=42.0968;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:10,2:10:397:2:81:-4.07337,0,-32.476 0/0:19:18,1:18:706:1:41:0,-1.832,-59.9802 0/1:8:4,4:4:164:4:157:-10.9657,0,-12.7417 dDocent_Contig_6633 20 . G T 142.856 . AB=0.139535;ABP=100.07;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1M1I1M1X;DP=86;DPB=90;DPRA=0;EPP=29.068;EPPR=161.528;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=476;QR=2858;RO=73;RPL=0;RPP=29.068;RPPR=161.528;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:32:27,4:27:1050:4:159:-4.96905,0,-85.0745 0|1:26:23,3:23:899:3:114:-2.80331,0,-73.3972 0|1:28:23,5:23:909:5:203:-10.2242,0,-73.6922 dDocent_Contig_6635 12 . C A 61.8359 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=3X;DP=8;DPB=8;DPRA=1.2;EPP=7.35324;EPPR=16.0391;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=23.5;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=74;QR=239;RO=6;RPL=0;RPP=7.35324;RPPR=16.0391;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=6;SRP=16.0391;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:3:3,0:3:120:0:0:0,-0.90309,-10.3518 1|1:3:1,2:1:38:2:74:-5.9951,-0.203366,0 0|0:2:2,0:2:81:0:0:0,-0.60206,-1.3297 dDocent_Contig_6636 19 . A G 171.208 . AB=0.26087;ABP=14.4341;AC=3;AF=0.5;AN=6;AO=6;CIGAR=1X2M;DP=38;DPB=38;DPRA=0;EPP=16.0391;EPPR=18.2106;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=54;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.75;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=1038;RO=28;RPL=0;RPP=16.0391;RPPR=63.8115;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=21;SRP=18.2106;SRR=7;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:11,4,0:11:413:4,0:112,0:-5.47847,0,-32.9982,-8.7898,-34.2023,-42.694 0|1:13:10,0,3:10:345:0,3:0,117:-6.99682,-10.0071,-36.8104,0,-27.1796,-26.2765 0|1:10:7,0,3:7:280:0,3:0,122:-8.36219,-10.4694,-33.5296,0,-23.4643,-22.5613 dDocent_Contig_6637 70 . G A 138.568 . AB=0.225806;ABP=23.254;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=2X;DP=54;DPB=54;DPRA=0.673913;EPP=18.2106;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.714286;PAIREDR=0.829787;PAO=0;PQA=0;PQR=0;PRO=0;QA=275;QR=1810;RO=47;RPL=7;RPP=18.2106;RPPR=105.07;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:16:12,4:12:443:4:159:-9.87547,0,-35.3932 0|1:15:12,3:12:462:3:116:-6.30006,0,-37.409 0|0:23:23,0:23:905:0:0:0,-6.92369,-81.7614 dDocent_Contig_6638 12 . A G 127.094 . AB=0.555556;ABP=3.25157;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X1M1X;DP=30;DPB=30;DPRA=0.857143;EPP=6.91895;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=52.8;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=188;QR=989;RO=25;RPL=0;RPP=13.8677;RPPR=57.2971;RPR=5;RUN=1;SAF=4;SAP=6.91895;SAR=1;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:7:7,0:7:273:0:0:0,-2.10721,-24.9353 0|1:9:4,5:4:160:5:188:-13.9312,0,-12.0736 0|0:14:14,0:14:556:0:0:0,-4.21442,-50.3816 dDocent_Contig_6639 98 . N A 116.911 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:37:-3.69783,-0.30103,0 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 dDocent_Contig_6640 13 . A G 101.033 . AB=0.148936;ABP=53.3238;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=22.5536;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.444444;PAIREDR=0.816901;PAO=0;PQA=0;PQR=0;PRO=0;QA=361;QR=2844;RO=71;RPL=0;RPP=22.5536;RPPR=157.185;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:31,3:31:1244:3:123:-1.22977,0,-101.997 0/0:33:31,2:31:1240:2:74:0,-2.90997,-104.849 0/1:13:9,4:9:360:4:164:-11.2365,0,-28.8472 dDocent_Contig_6641 64 . C T 65.2039 . AB=0.166667;ABP=26.1727;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=91;DPB=91;DPRA=1.56818;EPP=13.8677;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=3388;RO=86;RPL=5;RPP=13.8677;RPPR=189.757;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:45:44,1:44:1733:1:41:0,-9.45178,-152.107 0/0:22:22,0:22:860:0:0:0,-6.62266,-77.7132 0/1:24:20,4:20:795:4:162:-7.74224,0,-64.642 dDocent_Contig_6642 14 . A C 104.647 . AB=0.155556;ABP=49.3833;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=115;DPB=115;DPRA=1.28571;EPP=18.2106;EPPR=237.529;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.990741;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=4321;RO=108;RPL=0;RPP=18.2106;RPPR=237.529;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:38,7:38:1503:7:273:-11.3856,0,-121.967 0/0:28:28,0:28:1128:0:0:0,-8.42884,-101.804 0/0:42:42,0:42:1690:0:0:0,-12.6433,-152.322 dDocent_Contig_6643 11 . C T 749.122 . AB=0.364865;ABP=14.748;AC=2;AF=0.333333;AN=6;AO=27;CIGAR=1X;DP=114;DPB=114;DPRA=0.925;EPP=61.6401;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1098;QR=3477;RO=87;RPL=0;RPP=61.6401;RPPR=191.928;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:23,4:23:925:4:162:-6.83915,0,-75.425 0/0:40:40,0:40:1585:0:0:0,-12.0412,-142.89 0/1:47:24,23:24:967:23:936:-70.3918,0,-73.1766 dDocent_Contig_6645 8 . C A 41.7851 . AB=0.122449;ABP=63.6786;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=235;DPB=235;DPRA=0.526882;EPP=16.0391;EPPR=495.935;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9736;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.969163;PAO=0;PQA=0;PQR=0;PRO=0;QA=220;QR=8666;RO=227;RPL=0;RPP=16.0391;RPPR=495.935;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=227;SRP=495.935;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:85:85,0:85:3241:0:0:0,-25.5875,-291.845 0/1:49:43,6:43:1632:6:220:-5.40033,0,-132.387 0/0:101:99,0:99:3793:0:0:0,-29.802,-341.125 dDocent_Contig_6647 18 . C T 68.6406 . AB=0.272727;ABP=7.94546;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=40;DPB=40;DPRA=0.758621;EPP=9.52472;EPPR=79.0118;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=1384;RO=35;RPL=0;RPP=9.52472;RPPR=79.0118;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:7,3:7:283:3:120:-7.78488,0,-22.4416 0/0:17:16,0:16:631:0:0:0,-4.81648,-56.7234 0/0:12:12,0:12:470:0:0:0,-3.61236,-42.6459 dDocent_Contig_6649 13 . C T 67.2995 . AB=0.173913;ABP=24.253;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=59;DPB=59;DPRA=1.27778;EPP=11.6962;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=2204;RO=55;RPL=0;RPP=11.6962;RPPR=122.441;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:467:0:0:0,-3.61236,-42.3764 0/1:23:19,4:19:765:4:161:-7.95179,0,-62.2475 0/0:24:24,0:24:972:0:0:0,-7.22472,-87.7776 dDocent_Contig_6650 16 . T G 57.5351 . AB=0.142857;ABP=41.7866;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=36;DPB=36;DPRA=17.5;EPP=13.8677;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=188;QR=1236;RO=31;RPL=0;RPP=13.8677;RPPR=70.3259;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:12,1:12:480:1:41:-0.181177,0,-39.6354 0/1:22:18,4:18:715:4:147:-6.96382,0,-58.0531 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_6652 8 . C T 56.797 . AB=0.16;ABP=28.1125;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=75;DPB=75;DPRA=1;EPP=11.6962;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=56;MQMR=54.2958;NS=3;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=0.704225;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=2708;RO=71;RPL=0;RPP=11.6962;RPPR=157.185;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:21,4:21:788:4:154:-6.60052,0,-62.1443 0/0:23:23,0:23:881:0:0:0,-6.92369,-74.7131 0/0:27:27,0:27:1039:0:0:0,-8.12781,-89.6645 dDocent_Contig_6653 14 . C T 233.668 . AB=0.727273;ABP=7.94546;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=59;DPB=59;DPRA=0.840909;EPP=24.725;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=383;QR=1953;RO=49;RPL=0;RPP=24.725;RPPR=109.412;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:876:0:0:0,-6.62266,-79.1527 0/1:11:3,8:3:121:8:306:-24.5869,0,-7.96866 0/0:26:24,2:24:956:2:77:0,-0.517947,-79.0331 dDocent_Contig_6654 7 . A T 526.984 . AB=0.216;ABP=90.5814;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1X;DP=125;DPB=125;DPRA=0;EPP=61.6401;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1033;QR=3733;RO=98;RPL=0;RPP=61.6401;RPPR=215.815;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:42,13:42:1610:13:497:-28.52,0,-128.611 0/1:27:20,7:20:771:7:265:-16.083,0,-61.5907 0/1:43:36,7:36:1352:7:271:-11.8122,0,-109.014 dDocent_Contig_6656 13 . G T 249.036 . AB=0.206349;ABP=50.1967;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=63;DPB=63;DPRA=0;EPP=31.2394;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=516;QR=1981;RO=50;RPL=0;RPP=31.2394;RPPR=111.584;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:5:3,2:3:120:2:79:-5.99248,0,-9.68275 0/1:18:15,3:15:578:3:122:-5.95395,0,-46.9306 0/1:40:32,8:32:1283:8:315:-16.6738,0,-103.695 dDocent_Contig_6657 14 . T C 148.074 . AB=0.212121;ABP=26.7649;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=69;DPB=69;DPRA=1.96429;EPP=20.3821;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=0.622951;PAO=0;PQA=0;PQR=0;PRO=0;QA=322;QR=2338;RO=61;RPL=0;RPP=20.3821;RPPR=135.47;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:26,7:26:976:7:281:-15.7282,0,-78.2174 0/0:14:14,0:14:536:0:0:0,-4.21442,-48.5798 0/0:22:21,1:21:826:1:41:0,-2.52809,-70.5615 dDocent_Contig_6658 22 . C A 59.1876 . AB=0.148148;ABP=32.0437;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=77;DPB=77;DPRA=0.666667;EPP=13.8677;EPPR=150.791;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8194;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.8;PAIREDR=0.986111;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=2848;RO=72;RPL=0;RPP=13.8677;RPPR=159.356;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=71;SRP=150.791;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:23,4:23:874:4:162:-6.83915,0,-70.8354 0/0:17:16,1:16:640:1:40:0,-1.12183,-53.9398 0/0:33:33,0:33:1334:0:0:0,-9.93399,-120.296 dDocent_Contig_6659 32 . T C 1031.58 . AB=0.576271;ABP=5.99147;AC=2;AF=0.333333;AN=6;AO=35;CIGAR=1X;DP=81;DPB=81;DPRA=0;EPP=79.0118;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.956522;PAO=0;PQA=0;PQR=0;PRO=0;QA=1401;QR=1850;RO=46;RPL=0;RPP=79.0118;RPPR=102.898;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:16,6:16:644:6:239:-15.2618,0,-51.6725 0/0:22:21,1:21:839:1:39:0,-2.7261,-71.927 0/1:37:9,28:9:367:28:1123:-90.2145,0,-22.2571 dDocent_Contig_6660 12 . C T 572.271 . AB=0.0851064;ABP=73.2828;AC=0;AF=0;AN=6;AO=4;CIGAR=1X3M1X1M;DP=79;DPB=79;DPRA=0;EPP=11.6962;EPPR=81.1833;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=1395;RO=36;RPL=0;RPP=11.6962;RPPR=81.1833;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:47:27,4,9,1,6,0:27:1045:4,9,1,6,0:157,361,41,233,0:-21.6207,-16.8367,-101.467,0,-72.9236,-83.1275,-26.3829,-99.3052,-82.4712,-111.917,-10.6067,-83.5259,-66.6917,-93.0733,-94.6326,-29.7486,-102.671,-85.8368,-112.218,-96.4388,-115.584 0|0:16:7,0,5,2,0,2:7:271:0,5,2,0,2:0,186,72,0,75:-13.1165,-15.2238,-37.4927,0,-22.2739,-20.7687,-9.35252,-31.6211,-16.4042,-31.019,-15.2238,-37.4927,-22.2739,-31.6211,-37.4927,-9.08026,-31.351,-16.1329,-25.4798,-31.351,-30.7489 0|0:16:2,0,5,5,4,0:2:79:0,5,5,4,0:0,202,202,162,0:-26.2064,-26.8084,-33.3083,-10.1552,-16.6545,-15.1493,-10.1552,-16.6545,0,-15.1493,-13.45,-19.9495,-3.29505,-3.29505,-18.7454,-26.8084,-33.3083,-16.6545,-16.6545,-19.9495,-33.3083 dDocent_Contig_6661 53 . G A 927.161 . AB=0.35;ABP=18.6449;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1M1X;DP=80;DPB=80;DPRA=0;EPP=63.8115;EPPR=76.8404;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1093;QR=1319;RO=34;RPL=28;RPP=63.8115;RPPR=76.8404;RPR=0;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:31:18,2,11,0:18:699:2,11,0:82,440,0:-30.8173,-29.4662,-86.2926,0,-50.646,-54.105,-36.2359,-86.8946,-57.4163,-93.6639 0|1:28:11,5,11,1:11:427:5,11,1:191,431,40:-32.1322,-19.7771,-53.3539,0,-19.4186,-31.7746,-32.1478,-51.5635,-31.7901,-66.9305 1|0:21:5,0,6,10:5:193:0,6,10:0,222,397:-33.4825,-34.9877,-50.8364,-16.8422,-32.6874,-30.8812,-2.2907,-18.1469,0,-15.1366 dDocent_Contig_6662 10 . C T 87.1046 . AB=0.25;ABP=11.6962;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=46;DPB=46;DPRA=3.33333;EPP=13.8677;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=57.8;MQMR=59.7317;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=1650;RO=41;RPL=0;RPP=13.8677;RPPR=92.0407;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:242:0:0:0,-1.80618,-22.1571 0/1:16:12,4:12:476:4:160:-9.93222,0,-38.3186 0/0:24:23,1:23:932:1:39:0,-3.32816,-80.2857 dDocent_Contig_6663 13 . G A 502.279 . AB=0.566667;ABP=4.16842;AC=1;AF=0.166667;AN=6;AO=17;CIGAR=1X;DP=41;DPB=41;DPRA=5.45455;EPP=39.9253;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=665;QR=941;RO=24;RPL=0;RPP=39.9253;RPPR=55.1256;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:13,17:13:497:17:665:-51.1458,0,-36.0318 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/0:10:10,0:10:403:0:0:0,-3.0103,-36.6302 dDocent_Contig_6664 23 . T A 172.967 . AB=0.461538;ABP=3.17734;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=47;DPB=47;DPRA=1.63636;EPP=20.3821;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.0256;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.974359;PAO=0;PQA=0;PQR=0;PRO=0;QA=314;QR=1383;RO=39;RPL=0;RPP=20.3821;RPPR=87.6977;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:21,2:21:726:2:69:0,-0.371405,-59.0995 0/0:11:11,0:11:407:0:0:0,-3.31133,-36.9768 0/1:13:7,6:7:250:6:245:-18.5161,0,-17.46 dDocent_Contig_6666 68 . T C 760.452 . AB=0.484848;ABP=3.1419;AC=3;AF=0.5;AN=6;AO=32;CIGAR=1X;DP=66;DPB=66;DPRA=0;EPP=72.4974;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1096;QR=1144;RO=34;RPL=32;RPP=72.4974;RPPR=76.8404;RPR=0;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:4,12:4:136:12:410:-32.4121,0,-7.75899 0/1:18:12,6:12:400:6:203:-13.1836,0,-30.9035 0/1:32:18,14:18:608:14:483:-34.1663,0,-45.4064 dDocent_Contig_6667 7 . A G 652.573 . AB=0.451613;ABP=4.27115;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X1M;DP=62;DPB=62;DPRA=0;EPP=63.8115;EPPR=63.8115;GTI=0;LEN=1;MEANALT=2.33333;MQM=58.5;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.357143;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=953;QR=1050;RO=28;RPL=0;RPP=63.8115;RPPR=63.8115;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:9,0,10:9:335:0,10:0,350:-26.1123,-28.8216,-56.2523,0,-27.7922,-24.7819 0|1:32:14,2,15:14:526:2,15:73,490:-35.0511,-33.2966,-75.8122,0,-37.1562,-38.6043 0|1:11:5,2,3:5:189:2,3:52,113:-7.81061,-5.26312,-20.1779,0,-11.5218,-14.6738 dDocent_Contig_6668 57 . G A 95.3087 . AB=0.285714;ABP=8.59409;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=29;DPB=29;DPRA=1.86667;EPP=11.6962;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.92;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=965;RO=25;RPL=4;RPP=11.6962;RPPR=57.2971;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:392:0:0:0,-3.0103,-35.6348 0/1:14:10,4:10:389:4:162:-10.7525,0,-31.1502 0/0:5:5,0:5:184:0:0:0,-1.50515,-16.9149 dDocent_Contig_6670 62 . T G 641.447 . AB=0.1;ABP=114.19;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1M1X2M;DP=106;DPB=160.25;DPRA=0;EPP=20.3821;EPPR=126.784;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=322;QR=2209;RO=57;RPL=8;RPP=20.3821;RPPR=126.784;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:41:28,11,0,0,2:28:1079:11,0,0,2:427,0,0,81:-26.6416,0,-85.2588,-35.0704,-88.5701,-123.655,-35.0704,-88.5701,-123.655,-123.655,-28.3887,-81.8896,-116.975,-116.975,-116.373 0|0:26:9,9,3,3,0:9:349:9,3,3,0:346,106,116,0:-25.7004,0,-25.9677,-19.7826,-20.0502,-47.5505,-18.88,-19.1477,-38.9253,-46.6508,-28.4097,-28.677,-48.4536,-47.5539,-57.0827 0|1:39:20,4,2,7,6:20:781:4,2,7,6:157,71,263,241:-15.5163,-8.62225,-71.6208,-15.7553,-67.0417,-79.3527,0,-51.2854,-58.4156,-62.0912,-1.67046,-52.9631,-60.0936,-44.337,-64.0706 dDocent_Contig_6671 13 . T C 1387.27 . AB=0.104167;ABP=133.661;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X1M1X3M;DP=255;DPB=255;DPRA=0;EPP=24.725;EPPR=313.531;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=59.979;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=389;QR=5609;RO=143;RPL=0;RPP=24.725;RPPR=313.531;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=143;SRP=313.531;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:96:50,22,10,13:50:1949:22,10,13:874,389,518:-44.9223,0,-153.568,-27.9991,-128.223,-185.197,-17.3035,-117.532,-145.547,-173.603 0|1:55:37,13,0,4:37:1460:13,0,4:517,0,160:-31.3721,0,-116.211,-42.5102,-120.124,-162.638,-29.3305,-106.945,-149.459,-148.254 0|0:104:56,21,0,27:56:2200:21,0,27:835,0,1037:-66.149,-34.8466,-209.484,-83.0066,-215.805,-263.983,0,-132.853,-181.022,-172.895 dDocent_Contig_6672 121 . G C 347.055 . AB=0.459459;ABP=3.5385;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=37;DPB=37;DPRA=0;EPP=39.9253;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=540;QR=690;RO=20;RPL=0;RPP=39.9253;RPPR=46.4397;RPR=17;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:6,9:6:208:9:275:-20.5327,0,-14.5442 0/1:13:8,5:8:276:5:160:-10.8026,0,-21.2625 0/1:9:6,3:6:206:3:105:-7.08689,0,-16.1674 dDocent_Contig_6674 154 . T G 378.026 . AB=0.4375;ABP=4.09604;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=32;DPB=32;DPRA=0;EPP=33.4109;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=555;QR=572;RO=18;RPL=0;RPP=33.4109;RPPR=42.0968;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:272:2:80:-4.88252,0,-22.1351 0/1:15:10,5:10:259:5:193:-13.2236,0,-19.0459 0/1:8:1,7:1:41:7:282:-23.3444,0,-1.68633 dDocent_Contig_6675 23 . G A 36.9129 . AB=0.222222;ABP=9.04217;AC=1;AF=0.25;AN=4;AO=2;CIGAR=1X;DP=15;DPB=15;DPRA=1.5;EPP=7.35324;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=500;RO=13;RPL=0;RPP=7.35324;RPPR=31.2394;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:282:2:79:-4.78797,0,-23.0439 ./.:.:.:.:.:.:.:. 0/0:6:6,0:6:218:0:0:0,-1.80618,-19.9609 dDocent_Contig_6677 9 . T A 325.828 . AB=0.285714;ABP=16.9698;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X5M;DP=48;DPB=48;DPRA=0;EPP=24.725;EPPR=61.6401;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=385;QR=1031;RO=27;RPL=0;RPP=24.725;RPPR=61.6401;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:18:9,4,0,5:9:345:4,0,5:152,0,191:-12.9635,-3.20827,-30.3201,-15.6728,-31.5242,-43.989,0,-15.853,-28.3174,-26.8123 0|1:13:7,2,4,0:7:256:2,4,0:80,156,0:-10.7088,-6.22256,-26.5196,0,-14.2902,-19.6838,-12.816,-27.1216,-20.8879,-33.7157 0|1:17:11,1,0,5:11:430:1,0,5:39,0,194:-12.627,-12.7322,-47.7858,-15.9384,-48.0868,-51.2927,0,-32.1477,-35.3535,-33.8483 dDocent_Contig_6678 29 . G C 1312.1 . AB=0.387097;ABP=16.7396;AC=3;AF=0.5;AN=6;AO=48;CIGAR=1X;DP=124;DPB=124;DPRA=0;EPP=107.241;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1903;QR=2980;RO=76;RPL=0;RPP=107.241;RPPR=168.042;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:33,18:33:1293:18:725:-50.2217,0,-101.288 0/1:30:9,21:9:358:21:840:-66.8833,0,-23.5513 0/1:43:34,9:34:1329:9:338:-17.822,0,-106.932 dDocent_Contig_6679 10 . A G 97.5565 . AB=0.208333;ABP=20.744;AC=3;AF=0.5;AN=6;AO=5;CIGAR=1X;DP=24;DPB=24;DPRA=0;EPP=13.8677;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.736842;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=765;RO=19;RPL=0;RPP=13.8677;RPPR=44.2683;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:6,3:6:243:3:121:-8.57093,0,-19.5383 0/1:2:1,1:1:41:1:41:-3.49251,0,-3.49251 0/1:13:12,1:12:481:1:41:-0.181177,0,-39.728 dDocent_Contig_6680 98 . N C 21713.7 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=721;CIGAR=1X;DP=721;DPB=721;DPRA=0;EPP=1568.64;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0.998613;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=24124;QR=0;RO=0;RPL=721;RPP=1568.64;RPPR=0;RPR=0;RUN=1;SAF=721;SAP=1568.64;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:719:0,719:0:0:719:24064:-2165.37,-216.441,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:60:-5.69915,-0.60206,0 dDocent_Contig_6681 13 . A T 72.5619 . AB=0.3;ABP=6.48466;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=68;DPB=68;DPRA=0.344828;EPP=9.52472;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=2556;RO=64;RPL=0;RPP=9.52472;RPPR=141.985;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:7,3:7:277:3:120:-8.17701,0,-22.2895 0/0:23:23,0:23:906:0:0:0,-6.92369,-81.8468 0/0:35:34,0:34:1373:0:0:0,-10.235,-123.415 dDocent_Contig_6682 26 . T A 88.1994 . AB=0.153846;ABP=16.5402;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X1M3X;DP=40;DPB=40;DPRA=0;EPP=7.35324;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=1120;RO=31;RPL=0;RPP=7.35324;RPPR=70.3259;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:22:18,0,3:18:645:0,3:0,105:-3.31665,-8.73519,-61.3935,0,-52.8524,-51.9493 0|0:5:2,0,2:2:73:0,2:0,78:-6.0093,-6.61136,-12.6058,0,-6.14764,-5.54558 0|1:13:11,2,0:11:402:2,0:75,0:-3.20671,0,-32.6095,-6.51804,-33.2115,-39.3563 dDocent_Contig_6683 93 . C T 972.219 . AB=0.45;ABP=4.31318;AC=4;AF=0.666667;AN=6;AO=41;CIGAR=1X;DP=75;DPB=75;DPRA=0;EPP=92.0407;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1334;QR=1150;RO=34;RPL=41;RPP=92.0407;RPPR=76.8404;RPR=0;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:15:1,14:1:34:14:483:-40.4002,-1.11654,0 0/1:32:16,16:16:526:16:488:-34.5788,0,-38.0218 0/1:28:17,11:17:590:11:363:-24.5612,0,-44.9984 dDocent_Contig_6684 16 . G A 325.866 . AB=0.270833;ABP=24.906;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=86;DPB=86;DPRA=2.52632;EPP=31.2394;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=529;QR=2905;RO=73;RPL=0;RPP=31.2394;RPPR=161.528;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:35,13:35:1384:13:529:-33.5074,0,-110.366 0/0:13:13,0:13:525:0:0:0,-3.91339,-47.5972 0/0:25:25,0:25:996:0:0:0,-7.52575,-89.9338 dDocent_Contig_6685 68 . G A 119.468 . AB=0.333333;ABP=6.62942;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=23;DPB=23;DPRA=0.9375;EPP=13.8677;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=701;RO=18;RPL=5;RPP=13.8677;RPPR=42.0968;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:311:0:0:0,-2.40824,-28.3473 0/1:10:8,2:8:308:2:81:-4.67543,0,-25.0674 0/1:5:2,3:2:82:3:119:-9.59003,0,-6.27453 dDocent_Contig_6687 55 . T C 223.022 . AB=0.285714;ABP=5.80219;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X;DP=27;DPB=27;DPRA=0.4;EPP=18.2106;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.857143;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=766;RO=20;RPL=7;RPP=18.2106;RPPR=46.4397;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:581:0:0:0,-4.51545,-52.6287 1/1:5:0,5:0:0:5:194:-17.8324,-1.50515,0 0/1:7:5,2:5:185:2:79:-5.39042,0,-14.8994 dDocent_Contig_6688 16 . A G 37.3563 . AB=0.115385;ABP=69.8248;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X3M1X;DP=105;DPB=105;DPRA=1.96226;EPP=16.0391;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=225;QR=3910;RO=99;RPL=0;RPP=16.0391;RPPR=217.986;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:20:20,0:20:782:0:0:0,-6.0206,-70.7002 0|1:52:46,6:46:1812:6:225:-4.9574,0,-147.656 0|0:33:33,0:33:1316:0:0:0,-9.93399,-118.709 dDocent_Contig_6689 64 . A G 225.906 . AB=0.36;ABP=7.26639;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=32;DPB=32;DPRA=1.78571;EPP=22.5536;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=352;QR=863;RO=23;RPL=9;RPP=22.5536;RPPR=52.9542;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:279:0:0:0,-2.10721,-25.4806 0/1:15:12,3:12:434:3:119:-6.57956,0,-34.8693 0/1:10:4,6:4:150:6:233:-18.3298,0,-10.8552 dDocent_Contig_6690 9 . T C 204.099 . AB=0.232558;ABP=29.7245;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=82;DPB=82;DPRA=0;EPP=31.2394;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=59.5385;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=501;QR=2643;RO=69;RPL=0;RPP=31.2394;RPPR=152.842;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:14,2:14:539:2:78:-2.58699,0,-44.0392 0/1:27:19,8:19:727:8:310:-20.132,0,-57.6332 0/0:39:36,3:36:1377:3:113:0,-1.20202,-113.676 dDocent_Contig_6691 23 . G A 2035.55 . AB=0.560976;ABP=6.98251;AC=3;AF=0.5;AN=6;AO=69;CIGAR=1X;DP=123;DPB=123;DPRA=0;EPP=135.974;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.942029;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2704;QR=2141;RO=54;RPL=0;RPP=152.842;RPPR=120.27;RPR=69;RUN=1;SAF=67;SAP=135.974;SAR=2;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:28,34:28:1105:34:1324:-100.773,0,-81.0769 0/1:22:5,17:5:199:17:660:-53.1113,0,-11.6659 0/1:39:21,18:21:837:18:720:-53.3875,0,-63.9032 dDocent_Contig_6692 7 . A T 524.819 . AB=0.323944;ABP=22.1254;AC=3;AF=0.5;AN=6;AO=23;CIGAR=1X1M1X;DP=71;DPB=71;DPRA=0;EPP=52.9542;EPPR=96.3836;GTI=0;LEN=1;MEANALT=2.33333;MQM=43.6957;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=0;PAIREDR=0.860465;PAO=0;PQA=0;PQR=0;PRO=0;QA=880;QR=1618;RO=43;RPL=0;RPP=52.9542;RPPR=96.3836;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:29:14,14,0:14:522:14,0:539,0:-37.8664,0,-38.5048,-42.0808,-42.7192,-84.8177 0|1:21:14,4,2:14:523:4,2:148,76:-7.56947,0,-41.6104,-5.54732,-36.581,-47.7726 0|1:21:15,5,0:15:573:5,0:193,0:-10.7627,0,-45.5206,-15.2782,-47.0258,-62.2994 dDocent_Contig_6693 16 . T C 64.4748 . AB=0.25;ABP=9.52472;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=21;DPB=21;DPRA=2.66667;EPP=9.52472;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.333333;PAIREDR=0.944444;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=703;RO=18;RPL=0;RPP=9.52472;RPPR=42.0968;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:264:0:0:0,-2.10721,-24.1143 0/1:12:9,3:9:364:3:121:-7.66784,0,-29.5126 0/0:2:2,0:2:75:0:0:0,-0.60206,-7.1201 dDocent_Contig_6695 10 . G A 2331.19 . AB=0.655172;ABP=27.2709;AC=3;AF=0.5;AN=6;AO=76;CIGAR=1X3M;DP=116;DPB=116;DPRA=0;EPP=168.042;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.1447;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.842105;PAIREDR=0.888889;PAO=0;PQA=0;PQR=0;PRO=0;QA=3003;QR=1406;RO=36;RPL=0;RPP=168.042;RPPR=81.1833;RPR=76;RUN=1;SAF=76;SAP=168.042;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:26:7,4,15:7:274:4,15:140,581:-45.4528,-36.1796,-57.5047,0,-11.1807,-18.0383 0|1:39:7,0,32:7:277:0,32:0,1258:-101.73,-103.837,-126.635,0,-23.1926,-13.5596 0|1:51:22,0,29:22:855:0,29:0,1164:-89.6529,-96.2756,-166.523,0,-70.6407,-61.9108 dDocent_Contig_6696 27 . T C 119.936 . AB=0.153846;ABP=16.5402;AC=0;AF=0;AN=6;AO=2;CIGAR=1X2M1X2M1X;DP=70;DPB=70;DPRA=0.45614;EPP=7.35324;EPPR=133.299;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=2278;RO=60;RPL=0;RPP=7.35324;RPPR=133.299;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:25:24,0,0:24:909:0,0:0,0:0,-7.22472,-81.7551,-7.22472,-81.7551,-81.7551 0|0:13:6,2,5:6:236:2,5:80,184:-13.2154,-8.4223,-27.2477,0,-12.8169,-17.9036 0|0:32:30,0,2:30:1133:0,2:0,80:0,-9.0309,-101.863,-2.04117,-95.2719,-94.6698 dDocent_Contig_6697 113 . G A 85.8615 . AB=0.3125;ABP=7.89611;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=43;DPB=43;DPRA=1.65;EPP=16.0391;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=54.3333;MQMR=56.3514;NS=3;NUMALT=1;ODDS=0;PAIRED=0.833333;PAIREDR=0.945946;PAO=0;PQA=0;PQR=0;PRO=0;QA=177;QR=1255;RO=37;RPL=0;RPP=16.0391;RPPR=83.3548;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=83.3548;SRR=37;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:16,1:16:535:1:18:0,-3.38046,-46.7305 0/0:10:10,0:10:338:0:0:0,-3.0103,-30.748 0/1:16:11,5:11:382:5:159:-9.80799,0,-28.4169 dDocent_Contig_6698 35 . G A 84.0889 . AB=0.222222;ABP=21.1059;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X1M1X;DP=46;DPB=46;DPRA=2.84211;EPP=16.0391;EPPR=79.0118;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=184;QR=1160;RO=35;RPL=0;RPP=16.0391;RPPR=79.0118;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:4:4,0,0:4:136:0,0:0,0:0,-1.20412,-12.5759,-1.20412,-12.5759,-12.5759 0|1:27:17,6,4:17:565:6,4:184,125:-9.62979,0,-43.9265,-4.70175,-35.6933,-49.2333 0|0:15:14,0,1:14:459:0,1:0,31:0,-4.21442,-41.3131,-1.416,-38.8258,-38.5248 dDocent_Contig_6699 32 . G A 333.659 . AB=0.351351;ABP=10.1116;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=51;DPB=51;DPRA=0;EPP=33.4109;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=553;QR=1441;RO=37;RPL=0;RPP=33.4109;RPPR=83.3548;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:13,1:13:502:1:41:0,-0.119853,-41.4275 0/1:9:4,5:4:163:5:203:-15.9438,0,-12.3492 0/1:28:20,8:20:776:8:309:-19.7365,0,-61.7281 dDocent_Contig_6700 17 . A C 693.821 . AB=0.271028;ABP=51.7365;AC=3;AF=0.5;AN=6;AO=29;CIGAR=1X;DP=107;DPB=107;DPRA=0;EPP=65.983;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1158;QR=2980;RO=78;RPL=0;RPP=65.983;RPPR=172.385;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:23,5:23:886:5:205:-10.4062,0,-71.6253 0/1:44:32,12:32:1198:12:473:-29.677,0,-94.8595 0/1:35:23,12:23:896:12:480:-33.0156,0,-70.4142 dDocent_Contig_6701 96 . T C 236.504 . AB=0.342857;ABP=10.5174;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=35;DPB=35;DPRA=0;EPP=29.068;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=409;QR=774;RO=23;RPL=12;RPP=29.068;RPPR=52.9542;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:5:1,4:1:35:4:131:-10.6091,0,-1.99348 0/1:14:8,6:8:254:6:208:-14.8452,0,-18.9548 0/1:16:14,2:14:485:2:70:-1.83092,0,-39.1638 dDocent_Contig_6702 9 . G A 106.262 . AB=0.214286;ABP=22.8638;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=37;DPB=37;DPRA=1.55556;EPP=16.0391;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=50;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=1186;RO=31;RPL=0;RPP=16.0391;RPPR=70.3259;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:6,3:6:232:3:116:-8.07314,0,-18.5398 0/1:19:16,3:16:608:3:116:-4.87175,0,-49.3385 0/0:9:9,0:9:346:0:0:0,-2.70927,-31.4994 dDocent_Contig_6703 4 . T G 172.828 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=13I1X2M1X2M1X;DP=5;DPB=15.2857;DPRA=1.5;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=52;MQMR=0;NS=2;NUMALT=2;ODDS=0;PAIRED=0.666667;PAIREDR=0;PAO=3.5;PQA=106;PQR=0;PRO=0;QA=111;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,0,3:0:0:0,3:0,111:-9.79054,-9.79054,-9.79054,-0.90309,-0.90309,0 .:.:.:.:.:.:.:. 1|1:2:0,2,0:0:0:2,0:76,0:-7.18479,-0.60206,0,-7.18479,-0.60206,-7.18479 dDocent_Contig_6705 11 . G T 59.025 . AB=0.166667;ABP=26.1727;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=36;DPB=36;DPRA=4;EPP=11.6962;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=152;QR=1262;RO=32;RPL=0;RPP=11.6962;RPPR=72.4974;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:20,4:20:800:4:152:-6.82293,0,-65.0944 0/0:8:8,0:8:302:0:0:0,-2.40824,-27.5323 0/0:4:4,0:4:160:0:0:0,-1.20412,-14.7834 dDocent_Contig_6706 37 . G C 39.6156 . AB=0.25;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=27;DPB=27;DPRA=0.842105;EPP=7.35324;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=985;RO=25;RPL=0;RPP=7.35324;RPPR=57.2971;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:315:0:0:0,-2.40824,-28.7125 0/1:8:6,2:6:235:2:80:-5.18333,0,-19.1132 0/0:11:11,0:11:435:0:0:0,-3.31133,-39.5001 dDocent_Contig_6708 121 . T C 37.777 . AB=0.166667;ABP=26.1727;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=34;DPB=34;DPRA=1.2;EPP=11.6962;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=1022;RO=30;RPL=0;RPP=11.6962;RPPR=68.1545;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:13,2:13:444:2:70:-2.13195,0,-35.7721 0/0:10:10,0:10:334:0:0:0,-3.0103,-30.3839 0/1:9:7,2:7:244:2:70:-3.93813,0,-19.5908 dDocent_Contig_6709 9 . G A 451.923 . AB=0.173913;ABP=151.709;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X;DP=161;DPB=161;DPRA=0;EPP=63.8115;EPPR=291.816;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.1429;NS=3;NUMALT=1;ODDS=0;PAIRED=0.821429;PAIREDR=0.864662;PAO=0;PQA=0;PQR=0;PRO=0;QA=1070;QR=5055;RO=133;RPL=0;RPP=63.8115;RPPR=291.816;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=133;SRP=291.816;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:47,10:47:1778:10:374:-16.8509,0,-143.114 0/1:38:34,4:34:1290:4:156:-2.97815,0,-102.183 0/1:66:52,14:52:1987:14:540:-29.0761,0,-159.156 dDocent_Contig_6710 46 . C T 368.335 . AB=0.481481;ABP=3.09072;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=38;DPB=38;DPRA=1.22727;EPP=31.2394;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=517;QR=1009;RO=25;RPL=0;RPP=31.2394;RPPR=57.2971;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:445:0:0:0,-3.31133,-40.4063 0/1:17:6,11:6:239:11:436:-34.4767,0,-16.7657 0/1:10:8,2:8:325:2:81:-4.67543,0,-26.6093 dDocent_Contig_6711 9 . G A 83.0071 . AB=0.185185;ABP=26.2531;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=48;DPB=48;DPRA=2.57143;EPP=13.8677;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.976744;PAO=0;PQA=0;PQR=0;PRO=0;QA=192;QR=1639;RO=43;RPL=0;RPP=13.8677;RPPR=96.3836;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4,0:4:152:0:0:0,-1.20412,-14.0492 0/1:27:22,5:22:837:5:192:-9.5222,0,-67.523 0/0:17:17,0:17:650:0:0:0,-5.11751,-58.8358 dDocent_Contig_6712 6 . C T 81.272 . AB=0.147541;ABP=68.8308;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=88;DPB=88;DPRA=0;EPP=26.8965;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.298701;PAO=0;PQA=0;PQR=0;PRO=0;QA=378;QR=2988;RO=77;RPL=0;RPP=26.8965;RPPR=170.214;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:36,4:36:1392:4:139:-0.811489,0,-113.52 0/0:27:25,2:25:972:2:69:0,-1.57515,-81.2403 0/1:21:16,5:16:624:5:170:-9.31293,0,-50.1786 dDocent_Contig_6713 17 . C A 185.034 . AB=0.164179;ABP=68.6406;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=131;DPB=131;DPRA=2.09375;EPP=26.8965;EPPR=263.587;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=436;QR=4756;RO=120;RPL=0;RPP=26.8965;RPPR=263.587;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:56,11:56:2190:11:436:-19.4242,0,-177.11 0/0:31:31,0:31:1230:0:0:0,-9.33193,-110.975 0/0:33:33,0:33:1336:0:0:0,-9.93399,-120.496 dDocent_Contig_6714 44 . G A 147.922 . AB=0.333333;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=47;DPB=47;DPRA=1.06667;EPP=18.2106;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.285714;PAIREDR=0.525;PAO=0;PQA=0;PQR=0;PRO=0;QA=275;QR=1503;RO=40;RPL=0;RPP=18.2106;RPPR=89.8692;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:13,1:13:485:1:41:0,-0.119853,-39.8893 0/1:18:12,6:12:436:6:234:-16.0096,0,-34.1512 0/0:15:15,0:15:582:0:0:0,-4.51545,-52.7172 dDocent_Contig_6715 11 . T A 193.571 . AB=0.375;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X3M1X;DP=60;DPB=60;DPRA=0.666667;EPP=16.0391;EPPR=107.241;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=1886;RO=48;RPL=0;RPP=16.0391;RPPR=107.241;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:20:17,0,3:17:660:0,3:0,120:-5.16709,-10.2846,-64.5032,0,-54.6165,-53.7134 0|1:16:9,6,1:9:362:6,1:234,41:-16.5087,0,-28.0202,-15.8311,-26.4415,-45.3706 0|0:24:22,0,1:22:864:0,1:0,41:0,-6.62266,-77.6793,-3.22371,-74.2944,-73.9934 dDocent_Contig_6716 8 . C T 281.233 . AB=0.588235;ABP=4.1599;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=62;DPB=62;DPRA=0.755556;EPP=24.725;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=379;QR=1981;RO=52;RPL=0;RPP=24.725;RPPR=115.927;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1029:0:0:0,-8.12781,-92.9195 0/0:18:18,0:18:690:0:0:0,-5.41854,-62.4338 0/1:17:7,10:7:262:10:379:-29.3452,0,-18.8192 dDocent_Contig_6718 165 . T G 148.678 . AB=0.625;ABP=4.09604;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=38;DPB=38;DPRA=0.533333;EPP=13.8677;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=1267;RO=33;RPL=5;RPP=13.8677;RPPR=74.6689;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=74.6689;SRR=33;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:3,5:3:123:5:198:-15.7886,0,-9.05655 0/0:19:19,0:19:721:0:0:0,-5.71957,-65.2087 0/0:11:11,0:11:423:0:0:0,-3.31133,-38.4094 dDocent_Contig_6719 7 . A G 54.1923 . AB=0.166667;ABP=26.1727;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=85;DPB=85;DPRA=0.786885;EPP=11.6962;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=150;QR=3035;RO=81;RPL=0;RPP=11.6962;RPPR=178.9;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:934:0:0:0,-7.52575,-84.3759 0/1:24:20,4:20:748:4:150:-6.64108,0,-60.4243 0/0:36:36,0:36:1353:0:0:0,-10.8371,-122.059 dDocent_Contig_6720 17 . C T 635.102 . AB=0.0705882;ABP=275.287;AC=0;AF=0;AN=6;AO=12;CIGAR=1X1M1X1M1X;DP=170;DPB=170;DPRA=0;EPP=29.068;EPPR=259.244;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=45.7712;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.559322;PAO=0;PQA=0;PQR=0;PRO=0;QA=475;QR=4638;RO=118;RPL=0;RPP=29.068;RPPR=259.244;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=118;SRP=259.244;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:48:34,3,8,3:34:1338:3,8,3:120,313,101:-15.5107,-15.8554,-110.659,0,-85.8213,-93.3023,-17.576,-103.381,-87.5298,-112.367 0|0:64:40,6,16,1:40:1567:6,16,1:235,641,40:-40.7728,-33.4928,-136.99,0,-85.9687,-100.483,-49.5188,-135.501,-102.003,-154.527 0|0:58:44,3,8,3:44:1733:3,8,3:120,296,120:-10.9434,-14.2988,-132.624,0,-109.317,-116.798,-14.2994,-123.639,-109.318,-132.625 dDocent_Contig_6721 23 . A T 137.302 . AB=0.384615;ABP=4.51363;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=27;DPB=27;DPRA=1.85714;EPP=13.8677;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=880;RO=22;RPL=0;RPP=13.8677;RPPR=50.7827;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:8,5:8:316:5:202:-14.6481,0,-24.8915 0/0:13:13,0:13:524:0:0:0,-3.91339,-47.5073 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 dDocent_Contig_6722 119 . T C 109.185 . AB=0.311111;ABP=16.956;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=45;DPB=45;DPRA=0;EPP=25.3454;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=25.6429;MQMR=39.2258;NS=3;NUMALT=1;ODDS=0;PAIRED=0.928571;PAIREDR=0.645161;PAO=0;PQA=0;PQR=0;PRO=0;QA=439;QR=1019;RO=31;RPL=0;RPP=33.4109;RPPR=70.3259;RPR=14;RUN=1;SAF=1;SAP=25.3454;SAR=13;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:10,7:10:319:7:212:-6.74805,0,-21.2642 0/1:7:5,2:5:146:2:56:-2.73102,0,-11.3199 0/1:21:16,5:16:554:5:171:-5.14939,0,-16.9925 dDocent_Contig_6723 15 . T C 165.414 . AB=0.125;ABP=22.5536;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=1X3M;DP=38;DPB=38;DPRA=1.14286;EPP=7.35324;EPPR=65.983;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=1138;RO=29;RPL=0;RPP=7.35324;RPPR=65.983;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:8:3,5,0:3:118:5,0:198,0:-15.7893,0,-8.59396,-16.6924,-10.0991,-26.3976 0|0:14:14,0,0:14:547:0,0:0,0:0,-4.21442,-49.5717,-4.21442,-49.5717,-49.5717 0|1:16:12,2,2:12:473:2,2:80,78:-2.98276,0,-38.317,-0.18849,-32.508,-38.497 dDocent_Contig_6724 71 . G A 2021.6 . AB=0.809524;ABP=72.911;AC=3;AF=0.5;AN=6;AO=68;CIGAR=1X;DP=84;DPB=84;DPRA=0;EPP=150.67;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2558;QR=624;RO=16;RPL=68;RPP=150.67;RPPR=37.7539;RPR=0;RUN=1;SAF=68;SAP=150.67;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:5,22:5:194:22:834:-67.2523,0,-9.70487 0/1:46:8,38:8:313:38:1418:-114.035,0,-14.6864 0/1:11:3,8:3:117:8:306:-24.5894,0,-7.59905 dDocent_Contig_6726 28 . T C 34148.4 . AB=0.471033;ABP=14.5842;AC=6;AF=1;AN=6;AO=748;CIGAR=3M1X;DP=1588;DPB=1588;DPRA=0;EPP=1584.13;EPPR=172.385;GTI=0;LEN=1;MEANALT=12;MQM=57.9719;MQMR=57.7436;NS=3;NUMALT=3;ODDS=4.44089e-16;PAIRED=0.906417;PAIREDR=0.833333;PAO=0;PQA=0;PQR=0;PRO=0;QA=29646;QR=3105;RO=78;RPL=0;RPP=1627.27;RPPR=172.385;RPR=748;RUN=1;SAF=743;SAP=1584.13;SAR=5;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:563:32,97,161,245:32:1262:97,161,245:3759,6332,9679:-1187.46,-888.303,-962.528,-681.132,-475.771,-736.091,-412.532,-207.172,0,-442.205 1|1:640:23,110,135,334:23:912:110,135,334:4262,5350,13204:-1426.17,-1082.99,-1124.95,-993.399,-718.362,-1027.83,-364.626,-89.5913,0,-339.154 1|1:385:23,68,105,169:23:931:68,105,169:2646,4165,6763:-804.927,-611.07,-666.287,-469.909,-344.818,-513.989,-266.26,-141.172,0,-291.074 dDocent_Contig_6727 8 . C A 12834.6 . 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AB=0.6049;ABP=65.4243;AC=5;AF=0.833333;AN=6;AO=395;CIGAR=2X4M;DP=653;DPB=653;DPRA=0;EPP=860.742;EPPR=106.557;GTI=0;LEN=1;MEANALT=5.66667;MQM=44.7696;MQMR=59.6301;NS=3;NUMALT=3;ODDS=0;PAIRED=0.964557;PAIREDR=0.410959;PAO=0;PQA=0;PQR=0;PRO=0;QA=13754;QR=2832;RO=73;RPL=0;RPP=860.742;RPPR=161.528;RPR=395;RUN=1;SAF=395;SAP=860.742;SAR=0;SRF=66;SRP=106.557;SRR=7;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:120:9,20,4,80:9:347:20,4,80:754,124,2740:-221.817,-184.977,-206.757,-215.655,-203.907,-242.252,-11.6937,0,-30.6409,-15.4284 1|1:186:20,40,9,108:20:769:40,9,108:1566,286,3920:-351.023,-246.112,-297.204,-336.453,-288.656,-396.877,-47.7847,0,-90.3397,-78.4141 0|1:347:44,61,20,207:44:1716:61,20,207:2409,600,7094:-541.744,-419.588,-542.28,-512.283,-517.938,-647.317,0,-5.69785,-98.3748,-78.7631 dDocent_Contig_6730 10 . T A 279.459 . 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AB=0.0384615;ABP=195.436;AC=2;AF=0.333334;AN=6;AO=4;CIGAR=1X11I1M1X2M1X;DP=104;DPB=162.667;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=6;MQM=21.5;MQMR=0;NS=3;NUMALT=7;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=144;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:36:0,0,2,0,2,0,0,2:0:0:0,2,0,2,0,0,2:0,74,0,32,0,0,38:-7.59996,-7.59996,-7.59996,-2.27781,-2.27781,-1.67575,-7.59996,-7.59996,-2.27781,-7.59996,-5.85915,-5.85915,-0.536914,-5.85915,-5.25709,-7.59996,-7.59996,-2.27781,-7.59996,-5.85915,-7.59996,-7.59996,-7.59996,-2.27781,-7.59996,-5.85915,-7.59996,-7.59996,-5.32235,-5.32235,0,-5.32235,-3.58207,-5.32235,-5.32235,-4.72029 1|0:39:0,7,1,1,0,0,0,0:0:0:7,1,1,0,0,0,0:256,34,31,0,0,0,0:-20.8363,-2.48127,-0.374055,-20.2429,-1.88845,-19.9419,-18.3557,0,-17.7625,-18.0547,-20.8363,-2.48127,-20.2429,-18.3557,-20.8363,-20.8363,-2.48127,-20.2429,-18.3557,-20.8363,-20.8363,-20.8363,-2.48127,-20.2429,-18.3557,-20.8363,-20.8363,-20.8363,-20.8363,-2.48127,-20.2429,-18.3557,-20.8363,-20.8363,-20.8363,-20.8363 0|0:29:0,4,1,4,0,2,2,0:0:0:4,1,4,0,2,2,0:139,36,106,0,72,70,0:-13.3645,-12.439,-11.2349,-13.1321,-12.2088,-12.8311,-5.62571,-4.70522,-5.39429,-4.42159,-13.3645,-12.439,-13.1321,-5.62571,-13.3645,-7.74034,-6.8159,-7.50812,0,-7.74034,-7.13828,-8.20205,-7.27793,-7.9699,-0.462035,-8.20205,-2.57677,-7.59999,-13.3645,-12.439,-13.1321,-5.62571,-13.3645,-7.74034,-8.20205,-13.3645 dDocent_Contig_6742 31 . T A 30.8786 . AB=0.136364;ABP=28.2783;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=2X;DP=38;DPB=38;DPRA=2.75;EPP=9.52472;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=1326;RO=34;RPL=0;RPP=9.52472;RPPR=76.8404;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:22:19,3:19:718:3:114:-4.00826,0,-58.3159 0|0:8:8,0:8:324:0:0:0,-2.40824,-29.5292 0|0:8:7,0:7:284:0:0:0,-2.10721,-25.5251 dDocent_Contig_6743 18 . C A 707.306 . AB=0.142857;ABP=26.2761;AC=0;AF=0;AN=6;AO=3;CIGAR=1X1M1X;DP=65;DPB=65;DPRA=0;EPP=9.52472;EPPR=79.0118;GTI=0;LEN=1;MEANALT=3;MQM=21;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=1384;RO=35;RPL=0;RPP=9.52472;RPPR=79.0118;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:21:10,3,7:10:391:3,7:105,282:-20.3801,-18.7185,-49.9791,0,-27.6228,-30.1962 0|0:15:7,0,8:7:272:0,8:0,318:-24.4719,-26.5791,-48.9262,0,-22.7394,-20.3311 0|0:29:18,0,11:18:721:0,11:0,422:-29.5953,-35.0138,-94.4231,0,-59.7989,-56.4876 dDocent_Contig_6744 58 . T G 434.942 . AB=0.5;ABP=3.0103;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=37;DPB=37;DPRA=18;EPP=42.0968;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.944444;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=622;QR=682;RO=19;RPL=18;RPP=42.0968;RPPR=44.2683;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1,0:1:34:0:0:0,-0.30103,-3.39891 0/1:10:6,4:6:205:4:138:-9.74848,0,-15.773 0/1:26:12,14:12:443:14:484:-36.0616,0,-32.3891 dDocent_Contig_6745 120 . G A 115.222 . AB=0.315789;ABP=8.61041;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=24;DPB=24;DPRA=1.9;EPP=16.0391;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=208;QR=597;RO=18;RPL=0;RPP=16.0391;RPPR=42.0968;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:170:0:0:0,-1.50515,-15.6348 0/1:8:7,1:7:243:1:34:-0.990671,0,-19.8006 0/1:11:6,5:6:184:5:174:-12.6906,0,-13.5507 dDocent_Contig_6746 10 . C T 61.0442 . AB=0.104651;ABP=119.765;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=255;DPB=255;DPRA=0.691589;EPP=24.725;EPPR=535.021;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=400;QR=9714;RO=245;RPL=0;RPP=24.725;RPPR=535.021;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=245;SRP=535.021;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:107:107,0:107:4251:0:0:0,-32.2102,-382.572 0/0:62:61,1:61:2385:1:35:0,-15.1652,-211.322 0/1:86:77,9:77:3078:9:365:-7.32627,0,-251.211 dDocent_Contig_6747 13 . T A 34.9626 . AB=0.129032;ABP=40.0654;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X2M2I2M;DP=70;DPB=71.6;DPRA=1.58974;EPP=11.6962;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=152;QR=2604;RO=66;RPL=0;RPP=11.6962;RPPR=146.327;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:27:27,0:27:1066:0:0:0,-8.12781,-96.2381 0|0:12:12,0:12:471:0:0:0,-3.61236,-42.7416 0|1:31:27,4:27:1067:4:152:-4.71797,0,-86.9899 dDocent_Contig_6748 10 . C T 23612.4 . AB=0.0789692;ABP=1855.29;AC=1;AF=0.166667;AN=6;AO=95;CIGAR=4X;DP=1203;DPB=1203;DPRA=0;EPP=209.3;EPPR=196.271;GTI=0;LEN=1;MEANALT=14.3333;MQM=34.0842;MQMR=59.8652;NS=3;NUMALT=3;ODDS=0;PAIRED=0.705263;PAIREDR=0.865169;PAO=0;PQA=0;PQR=0;PRO=0;QA=3733;QR=3486;RO=89;RPL=0;RPP=209.3;RPPR=196.271;RPR=95;RUN=1;SAF=95;SAP=209.3;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:429:41,4,30,296:41:1594:4,30,296:157,1166,11070:-880.829,-880.259,-1010.03,-831.992,-950.053,-953.935,0,-118.079,-69.8287,-41.8885 0|0:317:20,17,20,199:20:783:17,20,199:653,785,7332:-587.775,-540.193,-599.461,-549.983,-560.766,-608.348,0,-10.7853,-20.5884,-4.48842 1|0:457:28,37,45,283:28:1109:37,45,283:1452,1782,10737:-896.26,-785.269,-865.412,-785.121,-756.983,-862.856,-28.2784,-0.136766,0,-34.3781 dDocent_Contig_6749 123 . G C 213.558 . AB=0.5;ABP=3.0103;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=39;DPB=39;DPRA=0.526316;EPP=24.725;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=323;QR=944;RO=29;RPL=0;RPP=24.725;RPPR=65.983;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:633:0:0:0,-5.71957,-57.2849 0/1:10:2,8:2:69:8:265:-21.1633,0,-3.54236 0/1:10:8,2:8:242:2:58:-2.49888,0,-19.067 dDocent_Contig_6750 30 . G A 760.346 . AB=0.590909;ABP=4.58955;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=43;DPB=43;DPRA=1.65;EPP=55.1256;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=921;QR=742;RO=19;RPL=0;RPP=55.1256;RPPR=44.2683;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:11:0,11:0:0:11:428:-38.8704,-3.31133,0 0/1:22:9,13:9:346:13:493:-38.085,0,-24.8714 0/0:10:10,0:10:396:0:0:0,-3.0103,-35.9951 dDocent_Contig_6751 98 . N T 66.2709 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.29832;PAIRED=0.333333;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=71;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:71:-6.62493,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_6752 60 . T C 123.008 . AB=0.3;ABP=9.95901;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=49;DPB=49;DPRA=1.37931;EPP=16.0391;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=210;QR=1453;RO=43;RPL=6;RPP=16.0391;RPPR=96.3836;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:14,6:14:463:6:210:-13.2217,0,-35.9643 0/0:15:15,0:15:504:0:0:0,-4.51545,-45.6783 0/0:14:14,0:14:486:0:0:0,-4.21442,-44.0693 dDocent_Contig_6753 192 . G A 40.8671 . AB=0.25;ABP=7.35324;AC=1;AF=0.25;AN=4;AO=2;CIGAR=1X;DP=16;DPB=16;DPRA=1;EPP=7.35324;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=560;RO=14;RPL=2;RPP=7.35324;RPPR=33.4109;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=33.4109;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:8:6,2:6:243:2:80:-5.18355,0,-19.8394 0/0:8:8,0:8:317:0:0:0,-2.40824,-28.895 dDocent_Contig_6754 8 . C T 45.0516 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=26;DPB=26;DPRA=0.363636;EPP=7.35324;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=73;QR=918;RO=24;RPL=0;RPP=7.35324;RPPR=55.1256;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:464:0:0:0,-3.61236,-42.1115 0/0:10:10,0:10:378:0:0:0,-3.0103,-34.3725 0/1:4:2,2:2:76:2:73:-5.72698,0,-6.01055 dDocent_Contig_6755 10 . C T 1531.26 . AB=0.297619;ABP=32.8939;AC=2;AF=0.333333;AN=6;AO=25;CIGAR=1X3M1X2M1X;DP=84;DPB=84;DPRA=0;EPP=57.2971;EPPR=42.0968;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=977;QR=694;RO=18;RPL=0;RPP=57.2971;RPPR=42.0968;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:31:3,3,10,15:3:115:3,10,15:111,391,575:-69.0011,-60.8266,-69.3618,-37.7546,-38.1161,-44.1832,-22.7169,-23.0793,0,-27.6395 0|1:19:6,1,10,2:6:236:1,10,2:39,398,82:-30.962,-29.563,-48.6735,0,-16.202,-16.3968,-25.998,-42.2048,-12.6351,-44.8083 0|0:34:9,1,5,18:9:343:1,5,18:40,188,723:-56.8795,-56.2936,-84.1242,-44.1926,-69.0267,-70.8168,0,-24.8378,-12.7356,-22.7155 dDocent_Contig_6757 11 . A T 174.175 . AB=0.285714;ABP=11.386;AC=4;AF=0.666667;AN=6;AO=7;CIGAR=1X;DP=22;DPB=22;DPRA=0;EPP=18.2106;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=277;QR=602;RO=15;RPL=0;RPP=18.2106;RPPR=35.5824;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:9,2:9:362:2:79:-4.1863,0,-29.6327 0/1:10:6,4:6:240:4:163:-12.0481,0,-18.9654 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_6758 166 . A G 1096.29 . AB=0.372727;ABP=18.487;AC=2;AF=0.333333;AN=6;AO=41;CIGAR=1X2M1X;DP=110;DPB=110;DPRA=0;EPP=92.0407;EPPR=107.241;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1372;QR=1622;RO=48;RPL=41;RPP=92.0407;RPPR=107.241;RPR=0;RUN=1;SAF=0;SAP=92.0407;SAR=41;SRF=0;SRP=107.241;SRR=48;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:51:25,10,16:25:857:10,16:343,545:-36.6899,-16.3662,-82.933,0,-41.727,-64.7591 0|1:34:20,9,5:20:658:9,5:269,169:-15.4499,0,-50.4612,-7.75694,-39.4691,-59.4502 0|1:25:3,22,0:3:107:22,0:760,0:-61.1932,0,-2.45642,-62.0963,-9.07908,-70.8202 dDocent_Contig_6759 8 . C T 3155.57 . AB=0.263718;ABP=595.104;AC=3;AF=0.5;AN=6;AO=322;CIGAR=1X;DP=1221;DPB=1221;DPRA=0;EPP=601.878;EPPR=1138.92;GTI=0;LEN=1;MEANALT=1.33333;MQM=25.3199;MQMR=34.5663;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.0546265;PAO=0;PQA=0;PQR=0;PRO=0;QA=12160;QR=33379;RO=897;RPL=0;RPP=702.224;RPPR=1950.82;RPR=322;RUN=1;SAF=310;SAP=601.878;SAR=12;SRF=791;SRP=1138.92;SRR=106;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:423:321,102:321:11892:102:3831:-107.635,0,-638.461 0/1:422:330,92:330:12063:92:3420:-54.7509,0,-613.39 0/1:376:246,128:246:9424:128:4909:-156.888,0,-371.693 dDocent_Contig_6760 7 . A C 666.31 . AB=0.568182;ABP=4.78696;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=44;DPB=44;DPRA=0;EPP=57.2971;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=917;QR=730;RO=19;RPL=0;RPP=57.2971;RPPR=44.2683;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:3,4:3:113:4:150:-11.7583,0,-8.43176 0/1:24:7,17:7:273:17:613:-48.2693,0,-17.7133 0/1:13:9,4:9:344:4:154:-10.3201,0,-27.4043 dDocent_Contig_6761 98 . N A 97.8983 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=98;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:63:-5.98364,-0.60206,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_6762 16 . C T 123.882 . AB=0.347826;ABP=7.63648;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=36;DPB=36;DPRA=0.884615;EPP=20.3821;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=29.25;MQMR=56.3571;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.75;PAO=0;PQA=0;PQR=0;PRO=0;QA=319;QR=1125;RO=28;RPL=0;RPP=20.3821;RPPR=63.8115;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:10,7:10:404:7:280:-13.2204,0,-29.7169 0/1:6:5,1:5:190:1:39:-1.22998,0,-14.7894 0/0:13:13,0:13:531:0:0:0,-3.91339,-48.1362 dDocent_Contig_6763 29 . T A 624.379 . AB=0.283784;ABP=33.0588;AC=4;AF=0.666666;AN=6;AO=21;CIGAR=1X1M;DP=74;DPB=74;DPRA=0;EPP=48.6112;EPPR=83.3548;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=814;QR=1348;RO=37;RPL=0;RPP=48.6112;RPPR=83.3548;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:27:7,8,12:7:237:8,12:314,467:-42.931,-19.2144,-36.0017,-6.66201,0,-22.2387 0|1:26:13,7,6:13:472:7,6:275,230:-18.709,0,-36.4204,-3.74979,-19.6443,-40.4658 0|1:21:17,1,3:17:639:1,3:37,117:-4.51449,-6.60994,-58.6495,0,-49.3313,-51.4549 dDocent_Contig_6764 48 . C T 33.7551 . AB=0.181818;ABP=22.3561;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=34;DPB=34;DPRA=0;EPP=13.8677;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.4;PAIREDR=0.931034;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=1147;RO=29;RPL=0;RPP=13.8677;RPPR=65.983;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:14,2:14:558:2:69:-1.73618,0,-45.745 0/0:12:11,1:11:430:1:34:0,-0.213449,-35.6525 0/1:6:4,2:4:159:2:60:-3.89262,0,-12.8853 dDocent_Contig_6765 41 . T G 96.1065 . AB=0.363636;ABP=4.78696;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=25;DPB=25;DPRA=1.57143;EPP=11.6962;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=153;QR=756;RO=21;RPL=0;RPP=11.6962;RPPR=48.6112;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 0/1:11:7,4:7:242:4:153:-10.8296,0,-18.8059 0/0:13:13,0:13:474:0:0:0,-3.91339,-42.9966 dDocent_Contig_6766 120 . A G 36.1194 . AB=0.333333;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=35;DPB=35;DPRA=0.413793;EPP=7.35324;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=54;MQMR=60;NS=3;NUMALT=1;ODDS=4.33681e-19;PAIRED=0;PAIREDR=0.666667;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=1142;RO=33;RPL=0;RPP=7.35324;RPPR=74.6689;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=74.6689;SRR=33;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:830:0:0:0,-7.22472,-75.0186 0/1:6:4,2:4:138:2:70:-4.8335,0,-10.9543 0/0:5:5,0:5:174:0:0:0,-1.50515,-16.002 dDocent_Contig_6767 23 . C T 369.073 . AB=0.346154;ABP=8.35546;AC=4;AF=0.666667;AN=6;AO=9;CIGAR=1M5I1M1X7M1X;DP=38;DPB=49.7273;DPRA=0;EPP=22.5536;EPPR=35.5824;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=6.93889e-18;PAIRED=0.777778;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=335;QR=563;RO=15;RPL=0;RPP=22.5536;RPPR=35.5824;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:12:5,4,0,3,0:5:186:4,0,3,0:146,0,108,0:-10.4265,0,-14.0263,-11.9316,-15.2305,-27.1584,-3.12179,-6.42294,-18.3486,-17.4455,-11.9316,-15.2305,-27.1584,-18.3486,-27.1584 0|1:18:9,2,0,1,6:9:338:2,0,1,6:74,0,32,224:-15.6447,-12.2991,-39.3879,-18.354,-39.99,-46.0438,-15.7814,-37.4151,-43.4684,-43.1674,0,-21.6481,-27.702,-25.1282,-25.8958 1|1:8:1,0,3,1,3:1:39:0,3,1,3:0,110,37,111:-14.5528,-14.8538,-18.0623,-5.86393,-9.07379,-8.1707,-11.8265,-15.0355,-6.04776,-14.7345,-5.77296,-8.98331,0,-5.95679,-8.08022 dDocent_Contig_6768 12 . C A 32.4676 . AB=0.181818;ABP=12.6832;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=60;DPB=60;DPRA=0.44898;EPP=7.35324;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=2285;RO=58;RPL=0;RPP=7.35324;RPPR=128.956;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:40,0:40:1586:0:0:0,-12.0412,-142.984 0/0:9:9,0:9:354:0:0:0,-2.70927,-32.2211 0/1:11:9,2:9:345:2:82:-4.46835,0,-28.0911 dDocent_Contig_6770 42 . T A 47.7765 . AB=0.16;ABP=28.1125;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=27;DPB=27;DPRA=6.25;EPP=11.6962;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.5;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=898;RO=23;RPL=0;RPP=11.6962;RPPR=52.9542;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:11,2:11:415:2:74:-3.11238,0,-33.7804 0/1:12:10,2:10:402:2:80:-3.97943,0,-32.9273 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 dDocent_Contig_6772 33 . C A 39.1923 . AB=0.176471;ABP=18.4661;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=67;DPB=67;DPRA=0.68;EPP=9.52472;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=110;QR=2539;RO=64;RPL=0;RPP=9.52472;RPPR=141.985;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:34,0:34:1339:0:0:0,-10.235,-120.778 0/0:16:16,0:16:630:0:0:0,-4.81648,-57.0353 0/1:17:14,3:14:570:3:110:-5.14103,0,-46.5247 dDocent_Contig_6773 15 . C T 49.8381 . AB=0.0924171;ABP=611.928;AC=2;AF=0.333333;AN=6;AO=49;CIGAR=1X;DP=657;DPB=657;DPRA=0;EPP=92.7497;EPPR=486.677;GTI=0;LEN=1;MEANALT=1;MQM=54.3061;MQMR=45.1908;NS=3;NUMALT=1;ODDS=0;PAIRED=0.877551;PAIREDR=0.685855;PAO=0;PQA=0;PQR=0;PRO=0;QA=1948;QR=23326;RO=608;RPL=0;RPP=109.412;RPPR=1323.27;RPR=49;RUN=1;SAF=47;SAP=92.7497;SAR=2;SRF=488;SRP=486.677;SRR=120;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:235:225,10:225:8617:10:388:0,-40.6477,-638.403 0/1:184:167,17:167:6259:17:672:-3.60844,0,-414.866 0/1:238:216,22:216:8450:22:888:-3.6925,0,-624.403 dDocent_Contig_6774 107 . N G 258.69 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=22.5536;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=9.4572;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=284;QR=0;RO=0;RPL=0;RPP=22.5536;RPPR=0;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:9:0,9:0:0:9:284:-25.869,-2.70927,0 dDocent_Contig_6775 9 . C T 170.33 . AB=0.133333;ABP=20.5268;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X2M2X;DP=41;DPB=41;DPRA=0;EPP=7.35324;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=1203;RO=31;RPL=0;RPP=7.35324;RPPR=70.3259;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:13,2,0:13:511:2,0:78,0:-2.88785,0,-41.8237,-6.80124,-42.4258,-48.837 0|0:5:3,0,2:3:110:0,2:0,78:-5.89763,-6.80072,-15.7774,0,-9.35701,-8.75495 0|0:21:15,0,5:15:582:0,5:0,200:-11.9595,-16.475,-64.2831,0,-47.8054,-46.3003 dDocent_Contig_6776 36 . C T 215.478 . AB=0.25;ABP=22.5536;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=71;DPB=71;DPRA=1.36842;EPP=24.725;EPPR=126.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.2951;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.918033;PAO=0;PQA=0;PQR=0;PRO=0;QA=404;QR=2357;RO=61;RPL=0;RPP=24.725;RPPR=135.47;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=60;SRP=126.927;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:27,9:27:1048:9:366:-22.4681,0,-83.7818 0/0:16:15,1:15:558:1:38:0,-1.01921,-46.1197 0/0:19:19,0:19:751:0:0:0,-5.71957,-67.9146 dDocent_Contig_6777 11 . A T 783.305 . AB=0.313131;ABP=33.038;AC=3;AF=0.5;AN=6;AO=31;CIGAR=1X2M1X;DP=99;DPB=99;DPRA=0;EPP=70.3259;EPPR=122.441;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1200;QR=2148;RO=55;RPL=0;RPP=70.3259;RPPR=122.441;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:32:13,9,9:13:504:9,9:351,339:-24.9437,0,-38.7024,-1.08545,-13.6377,-39.7811 0|1:24:13,9,2:13:506:9,2:351,78:-24.939,0,-38.8761,-22.4407,-35.1735,-63.4242 0|1:43:29,13,1:29:1138:13,1:498,37:-32.1527,0,-89.702,-37.8565,-90.5891,-131.156 dDocent_Contig_6778 23 . G A 215.039 . AB=0.230769;ABP=11.1951;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X;DP=22;DPB=22;DPRA=1.7;EPP=18.2106;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=284;QR=588;RO=15;RPL=0;RPP=18.2106;RPPR=35.5824;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:10,3:10:385:3:120:-7.2743,0,-31.0878 0/0:5:5,0:5:203:0:0:0,-1.50515,-18.6531 1/1:4:0,4:0:0:4:164:-15.1499,-1.20412,0 dDocent_Contig_6779 10 . A G 168.047 . AB=0.304348;ABP=10.6577;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=26;DPB=26;DPRA=3.83333;EPP=18.2106;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=280;QR=753;RO=19;RPL=0;RPP=18.2106;RPPR=44.2683;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3,0:3:122:0:0:0,-0.90309,-11.3725 0/1:15:9,6:9:348:6:239:-17.3677,0,-27.1618 0/1:8:7,1:7:283:1:41:-1.68633,0,-23.4348 dDocent_Contig_6780 21 . T G 1116.26 . AB=0.5;ABP=3.0103;AC=3;AF=0.5;AN=6;AO=39;CIGAR=1X2M1X;DP=78;DPB=78;DPRA=0;EPP=87.6977;EPPR=71.2168;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.897436;PAO=0;PQA=0;PQR=0;PRO=0;QA=1531;QR=1501;RO=39;RPL=0;RPP=87.6977;RPPR=87.6977;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=37;SRP=71.2168;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:45:20,25:20:777:25:981:-75.0486,0,-56.7066 0|1:12:6,6:6:223:6:225:-16.9961,0,-16.8137 0|1:21:13,8:13:501:8:325:-23.298,0,-39.1124 dDocent_Contig_6781 92 . T A 111.361 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X1M1X2M4X1I7X;DP=6;DPB=6.3125;DPRA=2;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=57;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:4:0,3:0:0:3:117:-10.5292,-0.90309,0 1|1:2:0,0:0:0:0:0:0,0,0 .:.:.:.:.:.:.:. dDocent_Contig_6782 11 . T G 826.907 . AB=0.0588235;ABP=60.4905;AC=0;AF=0;AN=6;AO=2;CIGAR=1X2M1X3M1X;DP=85;DPB=85;DPRA=0;EPP=7.35324;EPPR=85.5263;GTI=0;LEN=1;MEANALT=3;MQM=40;MQMR=47.2632;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0.578947;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=1496;RO=38;RPL=0;RPP=7.35324;RPPR=85.5263;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:22:8,0,8,4,2:8:307:0,8,4,2:0,321,159,77:-23.552,-25.9603,-50.3741,0,-24.4099,-22.0016,-12.8681,-37.2809,-11.3128,-36.0768,-19.6403,-44.0528,-18.0878,-30.9593,-43.4507 0|0:34:17,2,13,0,2:17:668:2,13,0,2:80,512,0,53:-37.0678,-36.1296,-83.2171,0,-41.6768,-43.8229,-42.1853,-83.8191,-47.7363,-89.8759,-38.452,-80.0761,-43.9957,-86.1325,-85.5304 0|0:29:13,0,9,0,7:13:521:0,9,0,7:0,360,0,231:-25.7876,-29.7009,-65.221,0,-35.545,-32.8357,-29.7009,-65.221,-35.545,-65.221,-11.8789,-47.3739,-17.6939,-47.3739,-45.2666 dDocent_Contig_6783 11 . T A 242.278 . AB=0.163043;ABP=93.7401;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=92;DPB=92;DPRA=0;EPP=35.5824;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.987013;PAO=0;PQA=0;PQR=0;PRO=0;QA=596;QR=3031;RO=77;RPL=0;RPP=35.5824;RPPR=170.214;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:26,9:26:1029:9:360:-22.2277,0,-82.3679 0/1:24:22,2:22:851:2:82:-0.554958,0,-69.6747 0/1:33:29,4:29:1151:4:154:-4.29836,0,-93.9383 dDocent_Contig_6784 36 . T C 412.499 . AB=0.26087;ABP=37.2818;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=42.0968;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=718;QR=1856;RO=51;RPL=0;RPP=42.0968;RPPR=113.755;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:36,6:36:1276:6:235:-8.87677,0,-102.456 0/1:4:2,2:2:79:2:79:-6.29312,0,-6.29351 0/1:23:13,10:13:501:10:404:-29.7967,0,-38.511 dDocent_Contig_6786 38 . T G 57.3421 . AB=0.142857;ABP=41.7866;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X1M1X;DP=86;DPB=86;DPRA=1.54762;EPP=16.0391;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=226;QR=3156;RO=79;RPL=0;RPP=16.0391;RPPR=174.557;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:35:30,5:30:1182:5:187:-6.65502,0,-96.1292 0|0:21:20,0:20:804:0:0:0,-6.0206,-72.268 0|0:30:29,1:29:1170:1:39:0,-5.13434,-101.681 dDocent_Contig_6787 108 . C T 206.231 . AB=0.382353;ABP=7.09778;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=34;DPB=34;DPRA=0;EPP=31.2394;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=366;QR=692;RO=21;RPL=0;RPP=31.2394;RPPR=48.6112;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:13,2:13:425:2:54:-0.614093,0,-34.05 0/1:9:6,3:6:201:3:83:-5.03576,0,-15.7101 0/1:10:2,8:2:66:8:229:-17.881,0,-3.25801 dDocent_Contig_6788 115 . G A 36.9285 . AB=0.2;ABP=18.6449;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=32;DPB=32;DPRA=3.33333;EPP=11.6962;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=924;RO=28;RPL=0;RPP=11.6962;RPPR=63.8115;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:16,4:16:522:4:115:-4.61335,0,-41.2723 0/0:7:7,0:7:228:0:0:0,-2.10721,-20.8397 0/0:5:5,0:5:174:0:0:0,-1.50515,-16.002 dDocent_Contig_6789 9 . A T 1645.13 . AB=0.495935;ABP=3.02795;AC=3;AF=0.5;AN=6;AO=61;CIGAR=1X;DP=123;DPB=123;DPRA=0;EPP=135.47;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=52.918;MQMR=51.5968;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.516129;PAO=0;PQA=0;PQR=0;PRO=0;QA=2282;QR=2318;RO=62;RPL=0;RPP=135.47;RPPR=137.642;RPR=61;RUN=1;SAF=61;SAP=135.47;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:20,12:20:731:12:438:-30.0904,0,-54.1397 0/1:32:15,17:15:564:17:651:-48.7051,0,-40.8666 0/1:59:27,32:27:1023:32:1193:-89.4344,0,-66.132 dDocent_Contig_6790 21 . A T 457.243 . AB=0.178571;ABP=128.645;AC=2;AF=0.333333;AN=6;AO=26;CIGAR=1X;DP=169;DPB=169;DPRA=0;EPP=59.4686;EPPR=309.188;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.4615;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.346154;PAIREDR=0.553191;PAO=0;PQA=0;PQR=0;PRO=0;QA=1019;QR=5531;RO=141;RPL=0;RPP=59.4686;RPPR=309.188;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=141;SRP=309.188;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:90:74,16:74:2887:16:637:-30.488,0,-232.859 0/0:29:28,1:28:1095:1:26:0,-6.13004,-96.236 0/1:50:39,9:39:1549:9:356:-17.555,0,-124.805 dDocent_Contig_6791 19 . C T 119.246 . AB=0.375;ABP=5.18177;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X3M;DP=23;DPB=23;DPRA=1.14286;EPP=16.0391;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.166667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=588;RO=15;RPL=0;RPP=16.0391;RPPR=35.5824;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:4:2,0,2:2:80:0,2:0,72:-5.63112,-6.23318,-12.8433,0,-6.98973,-6.38767 0|1:12:6,2,4:6:231:2,4:80,129:-8.61213,-5.87188,-24.2705,0,-14.5029,-17.8326 0|0:7:7,0,0:7:277:0,0:0,0:0,-2.10721,-25.2985,-2.10721,-25.2985,-25.2985 dDocent_Contig_6792 9 . A T 92.55 . AB=0.266667;ABP=10.1038;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=25;DPB=25;DPRA=3;EPP=3.0103;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=59.5;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=794;RO=21;RPL=0;RPP=11.6962;RPPR=48.6112;RPR=4;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:11,4:11:412:4:159:-10.1744,0,-32.9133 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.40347 0/0:8:8,0:8:304:0:0:0,-2.40824,-27.719 dDocent_Contig_6793 19 . T C 79.8359 . AB=0.133333;ABP=20.5268;AC=0;AF=0;AN=6;AO=3;CIGAR=3M1X5M;DP=47;DPB=46.5556;DPRA=1.63636;EPP=9.52472;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=1545;RO=40;RPL=0;RPP=9.52472;RPPR=89.8692;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:21:20,0,1:20:769:0,1:0,41:0,-6.0206,-69.1238,-2.22706,-65.7385,-65.4374 0|0:15:9,4,2:9:350:4,2:146,77:-9.20539,0,-27.5616,-5.58654,-22.4449,-33.7635 0|0:11:11,0,0:11:426:0,0:0,0:0,-3.31133,-38.6927,-3.31133,-38.6927,-38.6927 dDocent_Contig_6794 17 . G A 43.386 . AB=0.157895;ABP=22.325;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=54;DPB=54;DPRA=1.08571;EPP=9.52472;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1984;RO=51;RPL=0;RPP=9.52472;RPPR=113.755;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:999:0:0:0,-7.82678,-90.2062 0/1:19:16,3:16:623:3:121:-5.56042,0,-50.6857 0/0:9:9,0:9:362:0:0:0,-2.70927,-32.944 dDocent_Contig_6795 9 . A C 4837.37 . AB=0.707736;ABP=133.828;AC=3;AF=0.5;AN=6;AO=247;CIGAR=1X2M;DP=349;DPB=349;DPRA=0;EPP=317.047;EPPR=63.2463;GTI=0;LEN=1;MEANALT=3;MQM=30.2389;MQMR=39.7945;NS=3;NUMALT=2;ODDS=0;PAIRED=0.825911;PAIREDR=0.753425;PAO=0;PQA=0;PQR=0;PRO=0;QA=7109;QR=2731;RO=73;RPL=0;RPP=539.364;RPPR=161.528;RPR=247;RUN=1;SAF=218;SAP=317.047;SAR=29;SRF=59;SRP=63.2463;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:87:22,0,65:22:821:0,65:0,1918:-132.722,-139.345,-195.117,0,-56.0753,-36.5084 0|1:87:18,5,62:18:634:5,62:197,1833:-127.462,-124.968,-160.796,0,-29.4761,-18.7201 0|1:175:33,19,120:33:1276:19,120:740,3358:-227.269,-205.16,-272.17,0,-40.7257,-36.6293 dDocent_Contig_6798 86 . T G 929.248 . AB=0.727273;ABP=12.8806;AC=3;AF=0.5;AN=6;AO=33;CIGAR=1X;DP=81;DPB=81;DPRA=0;EPP=74.6689;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1264;QR=1862;RO=48;RPL=33;RPP=74.6689;RPPR=107.241;RPR=0;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:15:1,14:1:39:14:543:-45.3183,-0.618886,0 0/1:22:6,16:6:231:16:609:-48.5259,0,-14.5352 0/0:44:41,3:41:1592:3:112:0,-2.79942,-133.099 dDocent_Contig_6799 8 . C T 67.7678 . AB=0.16129;ABP=33.9012;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1M3I1M1X3M;DP=47;DPB=52.1667;DPRA=0;EPP=13.8677;EPPR=70.3259;GTI=0;LEN=1;MEANALT=2.5;MQM=47.6;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.83871;PAO=0;PQA=0;PQR=0;PRO=0;QA=187;QR=1200;RO=31;RPL=0;RPP=13.8677;RPPR=70.3259;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:16:10,0,3:10:390:0,3:0,72:-1.70261,-4.71291,-36.8219,0,-32.0834,-31.1803 0|1:14:10,2,0:10:383:2,0:74,0:-3.01788,0,-30.8249,-6.02818,-31.4269,-37.4633 0|1:17:11,3,0:11:427:3,0:113,0:-5.70358,0,-34.1997,-9.01491,-35.1028,-44.1144 dDocent_Contig_6800 49 . C A 198.749 . AB=0.222222;ABP=33.1696;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=65;DPB=65;DPRA=1.125;EPP=24.725;EPPR=113.913;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=389;QR=2171;RO=55;RPL=0;RPP=24.725;RPPR=113.913;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:8,4:8:314:4:145:-9.78881,0,-25.0102 0/0:20:20,0:20:790:0:0:0,-6.0206,-71.4193 0/1:33:27,6:27:1067:6:244:-12.4048,0,-86.3869 dDocent_Contig_6801 33 . C T 111.583 . AB=0.294118;ABP=9.26925;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=27;DPB=27;DPRA=0.85;EPP=13.8677;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=870;RO=22;RPL=0;RPP=13.8677;RPPR=50.7827;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:393:0:0:0,-3.0103,-35.7265 0/1:11:8,3:8:315:3:118:-7.69139,0,-25.4044 0/1:6:4,2:4:162:2:80:-5.78561,0,-13.1608 dDocent_Contig_6802 98 . N C 2338.86 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=84;CIGAR=1X;DP=84;DPB=84;DPRA=0;EPP=185.414;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=61.4432;PAIRED=0.928571;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2596;QR=0;RO=0;RPL=84;RPP=185.414;RPPR=0;RPR=0;RUN=1;SAF=84;SAP=185.414;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:84:0,84:0:0:84:2596:-233.886,-25.2865,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_6805 44 . C T 239.428 . AB=0.166667;ABP=14.5915;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X3M1X;DP=31;DPB=31;DPRA=1.33333;EPP=7.35324;EPPR=48.6112;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=822;RO=21;RPL=0;RPP=7.35324;RPPR=48.6112;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:12:9,2,1:9:338:2,1:80,40:-3.88089,0,-27.0613,-3.29508,-24.3658,-30.6594 0|0:10:3,0,7:3:120:0,7:0,278:-22.3801,-23.2832,-33.169,0,-10.2846,-8.17739 0|0:9:9,0,0:9:364:0,0:0,0:0,-2.70927,-33.125,-2.70927,-33.125,-33.125 dDocent_Contig_6806 10 . G A 65.6542 . AB=0.173913;ABP=24.253;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=33;DPB=33;DPRA=1.15;EPP=11.6962;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=1117;RO=29;RPL=0;RPP=11.6962;RPPR=65.983;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:10,1:10:394:1:40:-0.684349,0,-32.5067 0/0:10:10,0:10:380:0:0:0,-3.0103,-34.5531 0/1:12:9,3:9:343:3:122:-7.76013,0,-27.6077 dDocent_Contig_6807 32 . G A 46.4511 . AB=0.1875;ABP=16.582;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=23;DPB=23;DPRA=1.14286;EPP=9.52472;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.95;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=801;RO=20;RPL=0;RPP=9.52472;RPPR=46.4397;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:6,2:6:241:2:82:-5.37144,0,-19.6576 0/1:8:7,1:7:281:1:39:-1.48832,0,-23.2528 0/0:7:7,0:7:279:0:0:0,-2.10721,-25.4808 dDocent_Contig_6808 9 . A T 394.938 . AB=0.0727273;ABP=90.2245;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=2X2M1X4M2X3M;DP=78;DPB=78;DPRA=0;EPP=11.6962;EPPR=57.2971;GTI=0;LEN=1;MEANALT=6.5;MQM=48;MQMR=60;NS=3;NUMALT=8;ODDS=0;PAIRED=0.5;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=150;QR=974;RO=25;RPL=0;RPP=11.6962;RPPR=57.2971;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:36:7,6,6,1,3,2,3,7,1:7:271:6,6,1,3,2,3,7,1:233,237,40,118,81,120,270,40:-20.0608,-3.02344,-23.4774,-2.66621,-5.78163,-23.1205,-18.8727,-21.9882,-21.6313,-40.8323,-12.4611,-15.5766,-15.2196,-31.4263,-33.8185,-15.488,-18.6035,-18.2466,-34.4533,-28.0416,-37.1466,-12.282,-15.3975,-15.0405,-31.2473,-24.8355,-27.8626,-33.6395,0,-3.11528,-2.75805,-18.9645,-12.5529,-15.5797,-12.3738,-20.1526,-18.8727,-21.9882,-21.6313,-37.838,-31.4263,-34.4533,-31.2473,-18.9645,-40.8323 0|1:19:11,0,2,3,1,0,0,0,1:11:436:0,2,3,1,0,0,0,1:0,80,110,40,0,0,0,41:-5.12073,-8.43206,-44.3299,-1.83568,-37.7385,-37.1365,0,-35.8852,-29.2948,-34.9822,-5.13431,-41.0342,-34.4427,-32.59,-40.7332,-8.43206,-44.3299,-37.7385,-35.8852,-41.0342,-44.3299,-8.43206,-44.3299,-37.7385,-35.8852,-41.0342,-44.3299,-44.3299,-8.43206,-44.3299,-37.7385,-35.8852,-41.0342,-44.3299,-44.3299,-44.3299,-5.0439,-40.9447,-34.3531,-32.5004,-37.6489,-40.9447,-40.9447,-40.9447,-40.6436 0|0:23:7,0,4,0,0,2,3,1,6:7:267:0,4,0,0,2,3,1,6:0,149,0,0,78,121,40,244:-18.026,-20.1332,-42.0307,-7.94374,-29.8376,-28.6335,-20.1332,-42.0307,-29.8376,-42.0307,-20.1332,-42.0307,-29.8376,-42.0307,-42.0307,-13.7228,-35.6197,-23.4271,-35.6197,-35.6197,-35.0176,-10.1571,-32.0546,-19.8618,-32.0546,-32.0546,-25.6434,-31.1515,-16.8378,-38.7352,-26.5422,-38.7352,-38.7352,-32.3242,-28.7589,-38.4342,0,-21.8989,-9.70586,-21.8989,-21.8989,-15.4872,-11.9208,-18.6029,-20.0927 dDocent_Contig_6809 56 . A G 94.9102 . AB=0.217391;ABP=18.9659;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=24;DPB=24;DPRA=11.5;EPP=13.8677;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=755;RO=19;RPL=5;RPP=13.8677;RPPR=44.2683;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:12,4:12:481:4:158:-9.784,0,-38.8242 0/1:7:6,1:6:234:1:41:-1.98736,0,-19.3227 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 dDocent_Contig_6810 22 . C G 517.565 . AB=0.241379;ABP=19.8579;AC=4;AF=0.666667;AN=6;AO=18;CIGAR=1X;DP=40;DPB=40;DPRA=0;EPP=42.0968;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.954545;PAO=0;PQA=0;PQR=0;PRO=0;QA=686;QR=870;RO=22;RPL=0;RPP=42.0968;RPPR=50.7827;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:12,3:12:471:3:105:-5.27725,0,-38.2235 1/1:11:0,11:0:0:11:425:-38.596,-3.31133,0 0/1:14:10,4:10:399:4:156:-10.202,0,-32.0521 dDocent_Contig_6811 15 . G T 85.4897 . AB=0.285714;ABP=8.59409;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=20;DPB=20;DPRA=1.16667;EPP=11.6962;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=630;RO=16;RPL=0;RPP=11.6962;RPPR=37.7539;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:8,3:8:310:3:121:-7.96887,0,-24.9519 0/0:6:6,0:6:241:0:0:0,-1.80618,-22.0667 0/1:3:2,1:2:79:1:38:-2.89418,0,-6.59454 dDocent_Contig_6813 8 . C A 124.162 . AB=0.0625;ABP=56.2114;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X2M2X1M;DP=65;DPB=67.6667;DPRA=0;EPP=7.35324;EPPR=87.6977;GTI=0;LEN=1;MEANALT=3;MQM=55;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=1516;RO=39;RPL=0;RPP=7.35324;RPPR=87.6977;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:22:15,0,0,0,7:15:578:0,0,0,7:0,0,0,279:-4.87908,-9.39453,-56.9955,-9.39453,-56.9955,-56.9955,-9.39453,-56.9955,-56.9955,-56.9955,0,-47.846,-47.846,-47.846,-45.7388 0|1:11:5,6,0,0,0:5:187:6,0,0,0:66,0,0,0:-1.18255,0,-13.8805,-2.6877,-15.6867,-18.1334,-2.6877,-15.6867,-18.1334,-18.1334,-2.6877,-15.6867,-18.1334,-18.1334,-18.1334 0|0:32:19,0,2,2,9:19:751:0,2,2,9:0,54,79,358:-9.77515,-15.4947,-77.3808,-11.7803,-73.6704,-73.0684,-8.98316,-70.891,-67.1808,-70.2889,0,-61.8667,-58.1633,-55.3794,-59.1574 dDocent_Contig_6815 23 . C A 1393.8 . AB=0.0657895;ABP=127.47;AC=0;AF=0;AN=6;AO=5;CIGAR=1X1M2X1M;DP=152;DPB=152;DPRA=0;EPP=13.8677;EPPR=124.613;GTI=0;LEN=1;MEANALT=5.5;MQM=35.4;MQMR=58.9643;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=0.785714;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=2211;RO=56;RPL=0;RPP=13.8677;RPPR=124.613;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:44:9,0,1,0,6,23:9:350:0,1,0,6,23:0,39,0,213,919:-72.4808,-75.19,-103.734,-72.0686,-100.613,-100.312,-75.19,-103.734,-100.613,-103.734,-59.0818,-87.624,-84.5028,-87.624,-85.8178,0,-28.5597,-25.4375,-28.5597,-12.4543,-21.636 0|0:32:10,0,4,2,14,1:10:393:0,4,2,14,1:0,120,71,487,40:-35.5548,-38.5651,-70.9114,-29.8133,-62.1589,-60.9548,-34.9095,-67.2543,-58.5036,-66.6522,0,-32.3777,-23.6364,-28.7275,-28.1633,-35.2664,-67.6146,-58.8622,-63.9576,-29.0797,-67.3135 0|0:76:37,6,0,2,20,9:37:1468:6,0,2,20,9:98,0,68,616,365:-35.0615,-40.5435,-159.616,-46.1996,-161.423,-167.089,-42.5608,-157.784,-163.45,-162.848,0,-115.246,-120.904,-117.267,-114.883,-16.0916,-131.341,-137.006,-133.367,-90.8209,-134.297 dDocent_Contig_6816 31 . C T 38.8581 . AB=0.25;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=55;DPB=55;DPRA=0.340426;EPP=7.35324;EPPR=101.382;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.924528;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=2136;RO=53;RPL=0;RPP=7.35324;RPPR=85.9769;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=51;SRP=101.382;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:6,2:6:242:2:76:-4.80657,0,-19.7491 0/0:30:30,0:30:1207:0:0:0,-9.0309,-108.906 0/0:17:17,0:17:687:0:0:0,-5.11751,-62.158 dDocent_Contig_6818 74 . T C 96.5605 . AB=0.227273;ABP=17.2236;AC=1;AF=0.25;AN=4;AO=5;CIGAR=1X;DP=30;DPB=30;DPRA=2.75;EPP=13.8677;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=189;QR=905;RO=25;RPL=5;RPP=13.8677;RPPR=57.2971;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:17,5:17:632:5:189:-10.7529,0,-50.589 ./.:.:.:.:.:.:.:. 0/0:8:8,0:8:273:0:0:0,-2.40824,-24.8936 dDocent_Contig_6819 30 . C G 665.481 . AB=0.444444;ABP=4.45795;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=54;DPB=54;DPRA=0;EPP=55.1256;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=949;QR=1178;RO=30;RPL=0;RPP=55.1256;RPPR=68.1545;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:15,2:15:579:2:79:-2.38012,0,-47.3278 0/1:20:7,13:7:281:13:510:-40.2242,0,-19.6414 0/1:17:8,9:8:318:9:360:-27.6457,0,-23.8675 dDocent_Contig_6820 8 . C T 38.0368 . AB=0.106061;ABP=91.9749;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=82;DPB=82;DPRA=2.0625;EPP=18.2106;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=266;QR=2868;RO=75;RPL=0;RPP=18.2106;RPPR=165.871;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:27,4:27:1039:4:152:-4.71727,0,-84.4863 0/1:35:32,3:32:1213:3:114:-0.0961688,0,-98.9239 0/0:16:16,0:16:616:0:0:0,-4.81648,-55.7793 dDocent_Contig_6821 10 . C T 1183.51 . AB=0.0707071;ABP=161.484;AC=0;AF=0;AN=6;AO=7;CIGAR=1X1M3X1M1X3M3X;DP=153;DPB=170;DPRA=0;EPP=18.2106;EPPR=187.585;GTI=0;LEN=1;MEANALT=4;MQM=16;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.352941;PAO=0;PQA=0;PQR=0;PRO=0;QA=272;QR=3351;RO=85;RPL=0;RPP=18.2106;RPPR=187.585;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:54:33,0,19:33:1304:0,19:0,653:-40.3391,-50.2731,-157.616,0,-107.297,-101.578 0|0:59:40,2,16:40:1569:2,16:79,584:-33.1533,-42.938,-171.411,0,-127.003,-124.451 0|0:40:12,5,20:12:478:5,20:193,682:-48.575,-46.5341,-84.4165,0,-33.8414,-33.4474 dDocent_Contig_6822 7 . A T 34.0873 . AB=0.25;ABP=7.35324;AC=1;AF=0.25;AN=4;AO=2;CIGAR=1X;DP=15;DPB=15;DPRA=1.14286;EPP=7.35324;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=472;RO=13;RPL=0;RPP=7.35324;RPPR=31.2394;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:256:0:0:0,-2.10721,-23.3913 0/1:8:6,2:6:216:2:76:-4.80643,0,-17.3814 ./.:.:.:.:.:.:.:. dDocent_Contig_6823 8 . C T 944.729 . AB=0.239583;ABP=59.5591;AC=3;AF=0.5;AN=6;AO=23;CIGAR=1X3M;DP=96;DPB=96;DPRA=0;EPP=52.9542;EPPR=70.3259;GTI=0;LEN=1;MEANALT=3.33333;MQM=53.6957;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0.782609;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=819;QR=1209;RO=31;RPL=0;RPP=52.9542;RPPR=70.3259;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:41:13,0,18,9,0:13:511:0,18,9,0:0,683,330,0:-52.0839,-55.9973,-98.0372,0,-42.0532,-36.6347,-29.3247,-71.3649,-15.3859,-68.6556,-55.9973,-98.0372,-42.0532,-71.3649,-98.0372 0|1:25:7,0,8,5,4:7:271:0,8,5,4:0,315,171,162:-23.8137,-25.9209,-48.1853,0,-22.27,-19.8617,-12.3324,-34.5914,-8.6814,-33.0863,-12.5554,-34.8226,-8.90288,-21.2302,-33.6185 0|1:30:11,3,7,9,0:11:427:3,7,9,0:119,264,318,0:-22.292,-15.8018,-49.9932,-3.98244,-29.2795,-36.9717,0,-25.2887,-13.4757,-32.3773,-25.6033,-50.8963,-39.0789,-35.0866,-60.6947 dDocent_Contig_6824 123 . G T 101.328 . AB=0.238095;ABP=15.5221;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=56;DPB=56;DPRA=1.2;EPP=13.8677;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.803922;PAO=0;PQA=0;PQR=0;PRO=0;QA=189;QR=2005;RO=51;RPL=5;RPP=13.8677;RPPR=113.755;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=113.755;SRR=51;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:16,5:16:636:5:189:-11.0536,0,-51.2539 0/0:19:19,0:19:752:0:0:0,-5.71957,-68.004 0/0:16:16,0:16:617:0:0:0,-4.81648,-55.854 dDocent_Contig_6825 134 . A G 129.979 . AB=0.333333;ABP=7.35324;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=39;DPB=39;DPRA=0;EPP=18.2106;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=259;QR=1214;RO=32;RPL=0;RPP=18.2106;RPPR=72.4974;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=72.4974;SRR=32;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:7,1:7:262:1:39:-1.48832,0,-21.5283 0/0:21:20,1:20:766:1:38:0,-2.52436,-65.471 0/1:10:5,5:5:186:5:182:-13.7242,0,-14.0903 dDocent_Contig_6826 10 . A G 137.654 . AB=0.144928;ABP=78.5712;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=111;DPB=111;DPRA=0;EPP=29.068;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.2929;NS=3;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=0.434343;PAO=0;PQA=0;PQR=0;PRO=0;QA=475;QR=3866;RO=99;RPL=0;RPP=29.068;RPPR=217.986;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:47,8:47:1833:8:320:-12.6116,0,-146.089 0/0:42:40,2:40:1568:2:74:0,-5.61924,-134.34 0/1:14:12,2:12:465:2:81:-3.47131,0,-37.9832 dDocent_Contig_6827 13 . G A 1162.59 . AB=0.454545;ABP=4.58955;AC=3;AF=0.5;AN=6;AO=40;CIGAR=1X;DP=88;DPB=88;DPRA=0;EPP=89.8692;EPPR=98.736;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.979167;PAO=0;PQA=0;PQR=0;PRO=0;QA=1616;QR=1934;RO=48;RPL=0;RPP=89.8692;RPPR=107.241;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=47;SRP=98.736;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:11,30:11:441:30:1215:-97.2785,0,-27.7034 0/1:25:22,3:22:882:3:118:-3.47583,0,-72.1639 0/1:22:15,7:15:611:7:283:-19.2203,0,-48.7042 dDocent_Contig_6828 132 . G A 157.151 . AB=0.1875;ABP=16.582;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X;DP=32;DPB=32;DPRA=0.954545;EPP=20.3821;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=34.75;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=256;QR=786;RO=24;RPL=0;RPP=20.3821;RPPR=55.1256;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:13,3:13:426:3:84:-2.85667,0,-33.8386 0/0:11:11,0:11:360:0:0:0,-3.31133,-32.7168 1/1:5:0,5:0:0:5:172:-13.774,-1.50515,0 dDocent_Contig_6829 121 . A C 159.844 . AB=0.538462;ABP=3.17734;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=18;DPB=18;DPRA=1.3;EPP=18.2106;EPPR=26.8965;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=394;RO=11;RPL=0;RPP=18.2106;RPPR=26.8965;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=26.8965;SRR=11;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:5:1,4:1:36:4:130:-10.5149,0,-2.09312 0/1:8:5,3:5:178:3:109:-7.75976,0,-13.9604 0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521 dDocent_Contig_6830 7 . A G 86.3068 . AB=0.227273;ABP=17.2236;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=31;DPB=31;DPRA=1.22222;EPP=13.8677;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=178;QR=983;RO=26;RPL=0;RPP=13.8677;RPPR=59.4686;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:11,1:11:429:1:39:-0.284205,0,-35.3533 0/1:10:6,4:6:229:4:139:-9.84152,0,-17.9654 0/0:9:9,0:9:325:0:0:0,-2.70927,-29.5943 dDocent_Contig_6831 100 . N A 346.622 . AB=0.2;ABP=6.91895;AC=6;AF=1;AN=6;AO=1;CIGAR=8X7M1X2M1X;DP=15;DPB=17;DPRA=0;EPP=5.18177;EPPR=0;GTI=0;LEN=1;MEANALT=4;MQM=44;MQMR=0;NS=3;NUMALT=7;ODDS=6.93889e-18;PAIRED=0;PAIREDR=0;PAO=2;PQA=80.4286;PQR=435;PRO=12;QA=38;QR=0;RO=0;RPL=0;RPP=5.18177;RPPR=0;RPR=1;RUN=1;SAF=1;SAP=5.18177;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:5:0,0,1,0,1,2,0,1:0:0:0,1,0,1,2,0,1:0,40,0,37,78,0,38:-9.0596,-9.0596,-9.0596,-8.13345,-8.13345,-7.83242,-9.0596,-9.0596,-8.13345,-9.0596,-6.29339,-6.29339,-5.37317,-6.29339,-5.99236,-3.06596,-3.06596,-2.15015,-3.06596,-0.283433,-2.4639,-9.0596,-9.0596,-8.13345,-9.0596,-6.29339,-3.06596,-9.0596,-6.01401,-6.01401,-5.09227,-6.01401,-3.24221,0,-6.01401,-5.71298 1|1:5:0,4,0,1,0,0,0,0:0:0:4,0,1,0,0,0,0:147,0,25,0,0,0,0:-13.6385,-1.65761,-0.453487,-13.6385,-1.65761,-13.6385,-11.9734,0,-11.9734,-11.6723,-13.6385,-1.65761,-13.6385,-11.9734,-13.6385,-13.6385,-1.65761,-13.6385,-11.9734,-13.6385,-13.6385,-13.6385,-1.65761,-13.6385,-11.9734,-13.6385,-13.6385,-13.6385,-13.6385,-1.65761,-13.6385,-11.9734,-13.6385,-13.6385,-13.6385,-13.6385 1|1:5:0,4,0,0,0,0,1,0:0:0:4,0,0,0,0,1,0:150,0,0,0,0,24,0:-13.5927,-1.56654,-0.36242,-13.5927,-1.56654,-13.5927,-13.5927,-1.56654,-13.5927,-13.5927,-13.5927,-1.56654,-13.5927,-13.5927,-13.5927,-13.5927,-1.56654,-13.5927,-13.5927,-13.5927,-13.5927,-12.0182,0,-12.0182,-12.0182,-12.0182,-12.0182,-11.7171,-13.5927,-1.56654,-13.5927,-13.5927,-13.5927,-13.5927,-12.0182,-13.5927 dDocent_Contig_6832 60 . A T 50.5286 . AB=0.4;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=26;DPB=26;DPRA=0.47619;EPP=7.35324;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=931;RO=24;RPL=2;RPP=7.35324;RPPR=55.1256;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:623:0:0:0,-4.81648,-56.4055 0/1:5:3,2:3:116:2:82:-6.27453,0,-9.31113 0/0:5:5,0:5:192:0:0:0,-1.50515,-17.6498 dDocent_Contig_6833 55 . A G 392.058 . AB=0.27451;ABP=25.534;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X3M1D8M;DP=51;DPB=48.1538;DPRA=0;EPP=33.4109;EPPR=63.8115;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=486;QR=952;RO=28;RPL=14;RPP=33.4109;RPPR=63.8115;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:23:12,3,7:12:416:3,7:102,243:-16.1532,-11.4921,-44.406,0,-25.553,-31.719 0|1:7:3,3,0:3:98:3,0:101,0:-7.27814,0,-7.00159,-8.18123,-7.90468,-16.0913 0|1:21:13,8,0:13:438:8,0:283,0:-19.4911,0,-33.4225,-23.4045,-35.8307,-58.888 dDocent_Contig_6834 72 . G T 351.352 . AB=0.327586;ABP=17.986;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=44.2683;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=615;QR=1285;RO=39;RPL=19;RPP=44.2683;RPPR=87.6977;RPR=0;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:11,9:11:369:9:278:-19.3022,0,-27.5146 0/1:27:21,6:21:699:6:208:-10.9315,0,-55.0956 0/1:11:7,4:7:217:4:129:-8.6182,0,-16.5241 dDocent_Contig_6835 11 . G C 248.749 . AB=0.25;ABP=26.8965;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=55;DPB=55;DPRA=2;EPP=26.8965;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.909091;PAO=0;PQA=0;PQR=0;PRO=0;QA=440;QR=1690;RO=44;RPL=0;RPP=26.8965;RPPR=98.5551;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:26,10:26:1001:10:400:-25.5214,0,-79.5481 0/1:8:7,1:7:279:1:40:-1.58744,0,-23.072 0/0:11:11,0:11:410:0:0:0,-3.31133,-37.2295 dDocent_Contig_6836 19 . T A 211.481 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=2X;DP=22;DPB=22;DPRA=0.75;EPP=16.0391;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=59.6667;MQMR=60;NS=3;NUMALT=1;ODDS=6.77626e-21;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=229;QR=635;RO=16;RPL=0;RPP=16.0391;RPPR=37.7539;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:7:7,0:7:279:0:0:0,-2.10721,-25.4813 0|0:9:9,0:9:356:0:0:0,-2.70927,-32.403 1|1:6:0,6:0:0:6:229:-20.9718,-1.80618,0 dDocent_Contig_6837 125 . G A 161.052 . AB=0.243902;ABP=26.3669;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=61;DPB=61;DPRA=0;EPP=26.8965;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=55.8182;MQMR=54.06;NS=3;NUMALT=1;ODDS=0;PAIRED=0.909091;PAIREDR=0.86;PAO=0;PQA=0;PQR=0;PRO=0;QA=384;QR=1757;RO=50;RPL=0;RPP=26.8965;RPPR=111.584;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=111.584;SRR=50;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:18,7:18:625:7:249:-15.2298,0,-41.3801 0/1:16:13,3:13:453:3:100:-3.19176,0,-33.2747 0/0:20:19,1:19:679:1:35:0,-2.52197,-57.9396 dDocent_Contig_6838 15 . A G 1389.43 . AB=0.671642;ABP=20.1552;AC=3;AF=0.5;AN=6;AO=45;CIGAR=1X;DP=67;DPB=67;DPRA=0;EPP=100.727;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1798;QR=880;RO=22;RPL=0;RPP=100.727;RPPR=50.7827;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:10,19:10:393:19:747:-58.816,0,-26.9973 0/1:18:4,14:4:163:14:565:-45.7727,0,-9.63989 0/1:20:8,12:8:324:12:486:-38.0707,0,-23.5088 dDocent_Contig_6839 41 . A T 86.513 . AB=0.1875;ABP=30.1537;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X2M1X;DP=37;DPB=37;DPRA=3.2;EPP=16.0391;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=221;QR=1229;RO=31;RPL=0;RPP=16.0391;RPPR=70.3259;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:20:18,2:18:704:2:76:-1.19407,0,-57.6692 0|1:12:8,4:8:325:4:145:-9.79077,0,-26.0073 0|0:5:5,0:5:200:0:0:0,-1.50515,-18.3795 dDocent_Contig_6840 1 . N G 186.602 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=208;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:208:-18.66,-1.80618,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_6842 12 . C T 6558.04 . AB=0.025;ABP=708.522;AC=0;AF=0;AN=6;AO=9;CIGAR=1X3M1X1M;DP=360;DPB=360;DPRA=0;EPP=22.5536;EPPR=170.214;GTI=0;LEN=1;MEANALT=6.33333;MQM=60;MQMR=51.987;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.87013;PAO=0;PQA=0;PQR=0;PRO=0;QA=360;QR=3014;RO=77;RPL=0;RPP=22.5536;RPPR=170.214;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:152:35,1,15,97:35:1367:1,15,97:40,595,3585:-273.847,-281.087,-383.813,-241.032,-340.764,-339.544,0,-99.7588,-59.7001,-73.8551 0|0:94:26,1,5,57:26:1007:1,5,57:38,194,2066:-154.756,-159.466,-240.567,-149.083,-227.368,-228.98,0,-78.2956,-67.9168,-64.2536 0|0:114:16,7,6,78:16:640:7,6,78:282,228,2984:-230.918,-212.489,-255.328,-218.012,-239.713,-261.152,0,-21.6845,-27.2148,-21.4573 dDocent_Contig_6843 15 . T A 78.017 . AB=0.208333;ABP=20.744;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=79;DPB=79;DPRA=0.872727;EPP=13.8677;EPPR=146.797;GTI=0;LEN=1;MEANALT=1;MQM=42.4;MQMR=50.8378;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.945946;PAO=0;PQA=0;PQR=0;PRO=0;QA=179;QR=2958;RO=74;RPL=0;RPP=13.8677;RPPR=163.699;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=72;SRP=146.797;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:19,5:19:750:5:179:-8.72252,0,-58.3373 0/0:26:26,0:26:1042:0:0:0,-7.82678,-70.1206 0/0:29:29,0:29:1166:0:0:0,-8.72987,-98.469 dDocent_Contig_6844 1 . N G 71.2466 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:75:-7.12034,-0.60206,0 dDocent_Contig_6846 34 . C T 36.53 . AB=0.121951;ABP=53.9075;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=118;DPB=118;DPRA=1.06494;EPP=13.8677;EPPR=248.387;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=184;QR=4444;RO=113;RPL=0;RPP=13.8677;RPPR=248.387;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=113;SRP=248.387;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:36,5:36:1435:5:184:-4.57373,0,-117.065 0/0:42:42,0:42:1632:0:0:0,-12.6433,-147.121 0/0:35:35,0:35:1377:0:0:0,-10.536,-124.191 dDocent_Contig_6847 34 . G A 58.3859 . AB=0.3;ABP=6.48466;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=28;DPB=28;DPRA=1.11111;EPP=9.52472;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=108;QR=984;RO=25;RPL=0;RPP=9.52472;RPPR=57.2971;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:268:0:0:0,-2.10721,-24.4774 0/0:11:11,0:11:435:0:0:0,-3.31133,-39.5017 0/1:10:7,3:7:281:3:108:-7.06039,0,-22.6508 dDocent_Contig_6848 7 . A C 62.2998 . AB=0.244444;ABP=28.5372;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=66;DPB=66;DPRA=0;EPP=29.068;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=22;MQMR=59.1852;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.981481;PAO=0;PQA=0;PQR=0;PRO=0;QA=460;QR=2033;RO=54;RPL=0;RPP=29.068;RPPR=120.27;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:17,6:17:651:6:233:-3.74975,0,-52.0018 0/1:22:17,5:17:646:5:188:-4.79829,0,-51.8523 0/0:21:20,1:20:736:1:39:0,-5.12244,-63.2811 dDocent_Contig_6849 52 . G A 63.2646 . AB=0.15625;ABP=35.8538;AC=3;AF=0.5;AN=6;AO=5;CIGAR=1X;DP=32;DPB=32;DPRA=0;EPP=13.8677;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=1057;RO=27;RPL=5;RPP=13.8677;RPPR=61.6401;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:14,2:14:549:2:81:-2.86925,0,-44.9326 0/1:9:8,1:8:307:1:40:-1.28641,0,-25.2791 0/1:7:5,2:5:201:2:82:-5.67247,0,-16.3633 dDocent_Contig_6850 108 . G A 130.459 . AB=0.294118;ABP=15.5282;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=60;DPB=60;DPRA=2.61538;EPP=24.725;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=266;QR=1575;RO=50;RPL=0;RPP=24.725;RPPR=111.584;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=111.584;SRR=50;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:24,10:24:730:10:266:-13.9665,0,-55.7504 0/0:21:21,0:21:680:0:0:0,-6.32163,-61.5054 0/0:5:5,0:5:165:0:0:0,-1.50515,-15.1753 dDocent_Contig_6851 26 . T G 339.646 . AB=0.217391;ABP=34.9215;AC=4;AF=0.666667;AN=6;AO=10;CIGAR=1X5M;DP=46;DPB=46;DPRA=0;EPP=24.725;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=398;QR=983;RO=26;RPL=0;RPP=24.725;RPPR=59.4686;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:21:15,2,4:15:564:2,4:75,156:-8.41483,-9.47761,-55.0708,0,-42.8472,-45.1322 1|1:16:4,8,4:4:151:8,4:300,160:-24.1749,-0.826053,-10.7827,-12.191,0,-23.3637 0|1:9:7,0,2:7:268:0,2:0,82:-5.07041,-7.17762,-29.1502,0,-22.376,-21.774 dDocent_Contig_6852 23 . G A 116.755 . AB=0.177778;ABP=43.5927;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X;DP=45;DPB=45;DPRA=0;EPP=20.3821;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=309;QR=1468;RO=37;RPL=0;RPP=20.3821;RPPR=83.3548;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:19,4:19:742:4:156:-7.49275,0,-60.1843 0/1:7:5,2:5:201:2:71:-4.63317,0,-16.3633 0/1:15:13,2:13:525:2:82:-3.26423,0,-43.0812 dDocent_Contig_6853 14 . A G 72.8295 . AB=0.151515;ABP=37.8197;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1M8I3M1X1M1X3M1X;DP=46;DPB=50.3636;DPRA=1.26923;EPP=13.8677;EPPR=63.8115;GTI=0;LEN=1;MEANALT=4.5;MQM=38;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=187;QR=1078;RO=28;RPL=0;RPP=13.8677;RPPR=63.8115;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:21:10,4:10:383:4:148:-8.16729,0,-30.268 0|0:13:11,0:11:426:0:0:0,-3.31133,-38.3985 0|1:12:7,1:7:269:1:39:-0.81765,0,-21.9103 dDocent_Contig_6854 142 . A C 595.163 . AB=0.481481;ABP=3.17115;AC=3;AF=0.5;AN=6;AO=26;CIGAR=2X;DP=54;DPB=54;DPRA=0;EPP=59.4686;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=865;QR=977;RO=28;RPL=0;RPP=59.4686;RPPR=63.8115;RPR=26;RUN=1;SAF=0;SAP=59.4686;SAR=26;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:33:12,21:12:419:21:693:-52.745,0,-28.1104 0|1:9:8,1:8:279:1:35:-0.789359,0,-22.7397 0|1:12:8,4:8:279:4:137:-9.0558,0,-21.8359 dDocent_Contig_6855 8 . C A 548.136 . AB=0.34375;ABP=16.582;AC=3;AF=0.5;AN=6;AO=22;CIGAR=2M1X1M;DP=64;DPB=64;DPRA=0;EPP=50.7827;EPPR=74.6689;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=835;QR=1260;RO=33;RPL=0;RPP=50.7827;RPPR=74.6689;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:29:13,0,6,10:13:496:0,6,10:0,222,381:-27.3471,-31.2605,-71.9555,-13.1036,-53.7968,-51.9906,0,-40.7008,-22.5434,-37.6905 0|1:9:4,2,0,3:4:153:2,0,3:77,0,117:-8.41649,-3.30021,-15.2493,-9.62061,-15.8514,-22.1736,0,-6.23054,-12.5538,-11.6507 0|1:26:16,0,0,9:16:611:0,0,9:0,0,337:-22.7666,-27.5831,-77.7174,-27.5831,-77.7174,-77.7174,0,-50.1231,-50.1231,-47.4138 dDocent_Contig_6856 49 . C A 174.052 . AB=0.666667;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=32;DPB=32;DPRA=0.782609;EPP=16.0391;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=233;QR=1046;RO=26;RPL=0;RPP=16.0391;RPPR=59.4686;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:562:0:0:0,-4.21442,-50.9232 0/0:9:9,0:9:362:0:0:0,-2.70927,-32.944 0/1:9:3,6:3:122:6:233:-18.627,0,-8.66322 dDocent_Contig_6857 9 . T C 145.175 . AB=0.315789;ABP=8.61041;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=89;DPB=89;DPRA=0.542857;EPP=16.0391;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.333333;PAIREDR=0.879518;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=2955;RO=83;RPL=0;RPP=16.0391;RPPR=183.243;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:13,6:13:486:6:231:-15.4383,0,-38.3642 0/0:27:27,0:27:990:0:0:0,-8.12781,-89.3997 0/0:43:43,0:43:1479:0:0:0,-12.9443,-133.375 dDocent_Contig_6859 81 . C G 122.281 . AB=0.454545;ABP=3.20771;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=35;DPB=35;DPRA=0.916667;EPP=13.8677;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=179;QR=1056;RO=30;RPL=5;RPP=13.8677;RPPR=68.1545;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:6,5:6:213:5:179:-13.1489,0,-16.2046 0/0:15:15,0:15:521:0:0:0,-4.51545,-47.2117 0/0:9:9,0:9:322:0:0:0,-2.70927,-29.3242 dDocent_Contig_6860 9 . T G 1361.34 . AB=0.443478;ABP=6.20142;AC=2;AF=0.333333;AN=6;AO=51;CIGAR=1X;DP=130;DPB=130;DPRA=3.83333;EPP=113.755;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1916;QR=3017;RO=79;RPL=0;RPP=113.755;RPPR=174.557;RPR=51;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:23,44:23:871:44:1646:-128.237,0,-58.542 0/1:48:41,7:41:1571:7:270:-10.2161,0,-127.21 0/0:15:15,0:15:575:0:0:0,-4.51545,-52.0915 dDocent_Contig_6861 63 . T A 936.629 . AB=0.478873;ABP=3.28556;AC=3;AF=0.5;AN=6;AO=34;CIGAR=1X;DP=71;DPB=71;DPRA=0;EPP=76.8404;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1308;QR=1431;RO=37;RPL=34;RPP=76.8404;RPPR=83.3548;RPR=0;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:2,6:2:81:6:221:-17.8338,0,-5.27749 0/1:34:14,20:14:530:20:775:-59.8325,0,-37.8004 0/1:29:21,8:21:820:8:312:-19.7133,0,-65.3838 dDocent_Contig_6862 7 . A C 307.308 . AB=0.363636;ABP=4.78696;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X1M1X2M1X6M1X18M2X4M;DP=78;DPB=76.6757;DPRA=0;EPP=11.6962;EPPR=89.8692;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=6;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=144;QR=1541;RO=40;RPL=0;RPP=11.6962;RPPR=89.8692;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:32:17,2,0,0,2,3,7:17:652:2,0,0,2,3,7:79,0,0,76,106,270:-17.0558,-15.686,-68.6016,-22.1733,-69.2036,-75.6894,-22.1733,-69.2036,-75.6894,-75.6894,-15.94,-62.9706,-69.4565,-69.4565,-68.8544,-13.5473,-60.5743,-67.06,-67.06,-60.8273,-66.1569,0,-47.0349,-53.5211,-53.5211,-47.2881,-44.8924,-51.4139 0|1:11:6,0,4,0,0,1,0:6:222:0,4,0,0,1,0:0,144,0,0,35,0:-9.95129,-11.7575,-29.9231,0,-18.1762,-16.9721,-11.7575,-29.9231,-18.1762,-29.9231,-11.7575,-29.9231,-18.1762,-29.9231,-29.9231,-8.91173,-27.0768,-15.3313,-27.0768,-27.0768,-26.7758,-11.7575,-29.9231,-18.1762,-29.9231,-29.9231,-27.0768,-29.9231 0|0:35:17,1,0,3,1,4,0:17:667:1,0,3,1,4,0:33,0,112,39,153,0:-7.4404,-9.89246,-64.4556,-12.5579,-64.7566,-67.4231,-3.38777,-55.5875,-58.2538,-57.3507,-9.35105,-61.5506,-64.217,-55.0477,-63.916,0,-52.2016,-54.8678,-45.6987,-51.6617,-53.6637,-12.5579,-64.7566,-67.4231,-58.2538,-64.217,-54.8678,-67.4231 dDocent_Contig_6863 17 . C T 193.226 . AB=0.277778;ABP=10.7311;AC=2;AF=0.333334;AN=6;AO=5;CIGAR=3M1X;DP=34;DPB=36.25;DPRA=4.5;EPP=13.8677;EPPR=48.6112;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=829;RO=21;RPL=0;RPP=13.8677;RPPR=48.6112;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:12:9,3,0:9:353:3,0:119,0:-7.48303,0,-28.5179,-10.1923,-29.4209,-39.2181 0|1:18:8,4,5:8:317:4,5:159,201:-14.1576,-3.47671,-28.3624,0,-13.0008,-24.5867 0|0:4:4,0,0:4:159:0,0:0,0:0,-1.20412,-14.6923,-1.20412,-14.6923,-14.6923 dDocent_Contig_6865 8 . A G 55.2868 . AB=0.25;ABP=9.52472;AC=1;AF=0.25;AN=4;AO=3;CIGAR=1X;DP=25;DPB=25;DPRA=0.923077;EPP=9.52472;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=113;QR=828;RO=22;RPL=0;RPP=9.52472;RPPR=50.7827;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/0:13:13,0:13:486:0:0:0,-3.91339,-44.0834 0/1:12:9,3:9:342:3:113:-6.92661,0,-27.5236 dDocent_Contig_6866 48 . T A 242.844 . AB=0.209677;ABP=48.4011;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=62;DPB=62;DPRA=0;EPP=31.2394;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=506;QR=1935;RO=49;RPL=0;RPP=31.2394;RPPR=109.412;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:14,4:14:546:4:158:-9.18143,0,-44.0551 0/1:32:27,5:27:1063:5:192:-8.01503,0,-86.3344 0/1:12:8,4:8:326:4:156:-10.8046,0,-26.0973 dDocent_Contig_6867 194 . A C 45.2365 . AB=0.157895;ABP=22.325;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=30;DPB=30;DPRA=3.45455;EPP=9.52472;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=1040;RO=27;RPL=3;RPP=9.52472;RPPR=61.6401;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:234:0:0:0,-1.80618,-21.43 0/1:19:16,3:16:612:3:123:-5.74522,0,-49.6965 0/0:5:5,0:5:194:0:0:0,-1.50515,-17.8325 dDocent_Contig_6868 19 . A G 104.16 . AB=0.208333;ABP=20.744;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=83;DPB=83;DPRA=0.813559;EPP=13.8677;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.987179;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=3116;RO=78;RPL=0;RPP=13.8677;RPPR=172.385;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:19,5:19:767:5:202:-11.3368,0,-62.1263 0/0:33:33,0:33:1309:0:0:0,-9.93399,-118.079 0/0:26:26,0:26:1040:0:0:0,-7.82678,-93.8918 dDocent_Contig_6869 147 . C T 69.1308 . AB=0.173913;ABP=24.253;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=37;DPB=37;DPRA=3.28571;EPP=11.6962;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=1311;RO=33;RPL=0;RPP=11.6962;RPPR=74.6689;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=74.6689;SRR=33;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:364:0:0:0,-2.70927,-33.1244 0/0:5:5,0:5:199:0:0:0,-1.50515,-18.2874 0/1:23:19,4:19:748:4:163:-8.13474,0,-60.7117 dDocent_Contig_6872 11 . G T 320.323 . AB=0.333333;ABP=11.6962;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=72;DPB=72;DPRA=2;EPP=29.068;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=486;QR=2373;RO=60;RPL=0;RPP=29.068;RPPR=133.299;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:1017:0:0:0,-7.82678,-91.8228 0/0:10:10,0:10:396:0:0:0,-3.0103,-35.9974 0/1:36:24,12:24:960:12:486:-33.2542,0,-75.8594 dDocent_Contig_6873 60 . T C 180.847 . AB=0.25;ABP=20.3821;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=49;DPB=49;DPRA=0;EPP=22.5536;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=363;QR=1552;RO=40;RPL=9;RPP=22.5536;RPPR=89.8692;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:21,2:21:815:2:82:-0.855988,0,-66.7381 0/0:17:16,1:16:615:1:41:0,-1.02294,-51.5861 0/1:9:3,6:3:122:6:240:-19.2664,0,-8.66322 dDocent_Contig_6874 18 . A G 161.909 . AB=0.347826;ABP=7.63648;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X1M1X;DP=25;DPB=25;DPRA=5.75;EPP=20.3821;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1.5;MQM=44;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=283;QR=636;RO=16;RPL=0;RPP=20.3821;RPPR=37.7539;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 0|1:9:6,3:6:242:3:104:-6.69062,0,-19.4481 0|1:14:8,5:8:312:5:179:-11.8176,0,-24.1683 dDocent_Contig_6875 160 . T A 40.6896 . AB=0.121212;ABP=44.1367;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=45;DPB=45;DPRA=1.375;EPP=11.6962;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=1587;RO=41;RPL=4;RPP=11.6962;RPPR=92.0407;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=92.0407;SRR=41;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:269:2:81:-4.97646,0,-21.8619 0/1:24:22,2:22:862:2:80:-0.367071,0,-70.6679 0/0:12:12,0:12:456:0:0:0,-3.61236,-41.3811 dDocent_Contig_6877 14 . G A 2090.2 . AB=0.199219;ABP=405.343;AC=3;AF=0.5;AN=6;AO=102;CIGAR=1X;DP=512;DPB=512;DPRA=0;EPP=199.209;EPPR=512.431;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.9118;MQMR=57.3071;NS=3;NUMALT=1;ODDS=0;PAIRED=0.970588;PAIREDR=0.879607;PAO=0;PQA=0;PQR=0;PRO=0;QA=4062;QR=15946;RO=407;RPL=0;RPP=224.5;RPPR=886.8;RPR=102;RUN=1;SAF=99;SAP=199.209;SAR=3;SRF=358;SRP=512.431;SRR=49;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:140:127,13:127:4904:13:523:-5.27331,0,-390.308 0/1:205:151,54:151:5921:54:2158:-132.691,0,-466.038 0/1:167:129,35:129:5121:35:1381:-74.7731,0,-405.687 dDocent_Contig_6878 38 . T C 608.869 . AB=0.588235;ABP=5.30951;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=1X;DP=48;DPB=48;DPRA=1.21429;EPP=46.4397;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.3571;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.964286;PAO=0;PQA=0;PQR=0;PRO=0;QA=808;QR=1123;RO=28;RPL=0;RPP=46.4397;RPPR=63.8115;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:561:0:0:0,-4.21442,-50.8329 0/1:21:8,13:8:318:13:524:-41.1851,0,-22.665 0/1:13:6,7:6:244:7:284:-22.0206,0,-18.2347 dDocent_Contig_6879 13 . T G 42.1292 . AB=0.116279;ABP=58.0041;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=125;DPB=125;DPRA=1.04878;EPP=13.8677;EPPR=263.587;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=4795;RO=120;RPL=0;RPP=13.8677;RPPR=263.587;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:995:0:0:0,-7.52575,-89.8473 0/0:57:57,0:57:2262:0:0:0,-17.1587,-203.751 0/1:43:38,5:38:1538:5:200:-5.43474,0,-125.711 dDocent_Contig_6880 12 . T C 1504.72 . AB=0.347458;ABP=26.8597;AC=5;AF=0.833333;AN=6;AO=41;CIGAR=1M1X2M;DP=118;DPB=118;DPRA=0;EPP=36.112;EPPR=55.1256;GTI=0;LEN=1;MEANALT=3.66667;MQM=40.4878;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=0.756098;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1457;QR=931;RO=24;RPL=0;RPP=92.0407;RPPR=55.1256;RPR=41;RUN=1;SAF=33;SAP=36.112;SAR=8;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:41:8,0,8,11,0,14:8:295:0,8,11,0,14:0,298,432,0,502:-47.5913,-49.9996,-74.1216,-28.5941,-52.7149,-50.3066,-14.4497,-38.5776,-17.1695,-35.2663,-49.9996,-74.1216,-52.7149,-38.5776,-74.1216,-11.4287,-35.5487,-14.1507,0,-35.5487,-31.3343 1|1:33:5,0,2,8,0,18:5:195:0,2,8,0,18:0,79,315,0,668:-60.9928,-62.4979,-78.5293,-55.9951,-72.027,-71.425,-36.5756,-52.6097,-46.1064,-50.2015,-62.4979,-78.5293,-72.027,-52.6097,-78.5293,-9.88729,-25.9145,-19.4132,0,-25.9145,-20.496 0|1:44:11,3,2,15,4,9:11:441:3,2,15,4,9:113,79,594,156,287:-45.605,-39.7344,-75.1764,-42.4326,-69.5968,-78.1757,0,-27.1776,-29.8758,-31.8445,-37.1642,-64.3284,-67.0265,-24.6075,-72.3051,-27.8761,-55.0356,-57.7329,-15.3235,-52.4664,-61.5054 dDocent_Contig_6881 98 . N G 278.382 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=10;CIGAR=2X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=10.1503;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=306;QR=0;RO=0;RPL=10;RPP=24.725;RPPR=0;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:10:0,10:0:0:10:306:-27.8382,-3.0103,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_6882 11 . C A 422.77 . AB=0.276923;ABP=31.1058;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X;DP=65;DPB=65;DPRA=0;EPP=42.0968;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=716;QR=1821;RO=47;RPL=0;RPP=42.0968;RPPR=105.07;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:7,5:7:241:5:197:-14.4929,0,-18.4032 0/1:28:22,6:22:864:6:240:-13.5463,0,-69.6405 0/1:25:18,7:18:716:7:279:-17.9545,0,-57.2413 dDocent_Contig_6884 10 . T G 1490.35 . AB=0.119048;ABP=55.9529;AC=0;AF=0;AN=6;AO=5;CIGAR=1X1M1X3M1D3M1X8M;DP=91;DPB=86.9474;DPRA=0;EPP=13.8677;EPPR=33.4109;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=541;RO=14;RPL=0;RPP=13.8677;RPPR=33.4109;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:33:6,0,0,4,0,22:6:234:0,0,4,0,22:0,0,161,0,847:-67.7288,-69.535,-88.7708,-69.535,-88.7708,-88.7708,-56.3729,-75.6093,-75.6093,-74.4052,-69.535,-88.7708,-88.7708,-75.6093,-88.7708,0,-19.2374,-19.2374,-6.07122,-19.2374,-12.6147 0|0:16:0,0,1,5,0,9:0:0:0,1,5,0,9:0,41,191,0,324:-42.0179,-42.0179,-42.0179,-38.631,-38.631,-38.3299,-26.4187,-26.4187,-23.0299,-24.9136,-42.0179,-42.0179,-38.631,-26.4187,-42.0179,-15.6007,-15.6007,-12.2112,0,-15.6007,-12.8914 0|0:42:8,5,7,5,3,14:8:307:5,7,5,3,14:200,279,200,122,552:-43.0038,-28.9362,-52.624,-22.4364,-31.1527,-45.5219,-29.0438,-37.7604,-31.2603,-52.7315,-35.3479,-44.0648,-37.5647,-44.1724,-59.638,0,-8.7148,-2.21471,-8.82254,-15.1266,-20.9768 dDocent_Contig_6885 149 . G C 589.811 . AB=0.235294;ABP=23.7032;AC=4;AF=0.666667;AN=6;AO=21;CIGAR=1X;DP=48;DPB=48;DPRA=0;EPP=48.6112;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=827;QR=1086;RO=27;RPL=0;RPP=48.6112;RPPR=61.6401;RPR=21;RUN=1;SAF=0;SAP=48.6112;SAR=21;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:14:1,13:1:40:13:523:-43.4204,-0.218741,0 0/1:19:13,6:13:517:6:222:-14.6099,0,-41.155 0/1:15:13,2:13:529:2:82:-3.26423,0,-43.4412 dDocent_Contig_6886 15 . A T 38.528 . AB=0.15;ABP=24.2907;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=2X;DP=43;DPB=43;DPRA=1.73913;EPP=9.52472;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=1544;RO=40;RPL=0;RPP=9.52472;RPPR=89.8692;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:10:10,0:10:393:0:0:0,-3.0103,-35.7271 0|0:13:13,0:13:503:0:0:0,-3.91339,-45.6139 0|1:20:17,3:17:648:3:119:-5.07458,0,-52.6288 dDocent_Contig_6888 25 . A T 106.433 . AB=0.4;ABP=3.87889;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=33;DPB=33;DPRA=0.869565;EPP=11.6962;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=1149;RO=29;RPL=0;RPP=11.6962;RPPR=65.983;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:567:0:0:0,-4.21442,-51.3714 0/1:10:6,4:6:237:4:161:-11.8652,0,-18.6923 0/0:9:9,0:9:345:0:0:0,-2.70927,-31.4006 dDocent_Contig_6890 57 . T C 102.237 . AB=0.25;ABP=13.8677;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=39;DPB=39;DPRA=2.10526;EPP=13.8677;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=190;QR=1238;RO=34;RPL=5;RPP=13.8677;RPPR=76.8404;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:551:0:0:0,-4.51545,-49.9213 0/1:20:15,5:15:536:5:190:-11.4451,0,-42.5456 0/0:4:4,0:4:151:0:0:0,-1.20412,-13.9571 dDocent_Contig_6891 8 . A G 36.7923 . AB=0.25;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=35;DPB=35;DPRA=0.592593;EPP=7.35324;EPPR=58.3499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.6364;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.878788;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=1255;RO=33;RPL=0;RPP=7.35324;RPPR=74.6689;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=31;SRP=58.3499;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:797:0:0:0,-6.32163,-72.0418 0/0:6:6,0:6:230:0:0:0,-1.80618,-21.0663 0/1:8:6,2:6:228:2:77:-4.9009,0,-18.4759 dDocent_Contig_6892 28 . A C 56.5926 . AB=0.666667;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=26;DPB=26;DPRA=1.125;EPP=9.52472;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=920;RO=23;RPL=0;RPP=9.52472;RPPR=52.9542;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:14,1:14:553:1:41:0,-0.420883,-46.0197 0/0:8:8,0:8:326:0:0:0,-2.40824,-29.7099 0/1:3:1,2:1:41:2:82:-6.87659,0,-3.19148 dDocent_Contig_6895 15 . G A 359.184 . AB=0.232877;ABP=48.2543;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=73;DPB=73;DPRA=0;EPP=39.9253;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=672;QR=2186;RO=56;RPL=0;RPP=39.9253;RPPR=124.613;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:13,10:13:517:10:387:-28.2556,0,-39.9535 0/1:31:27,4:27:1069:4:163:-5.7265,0,-87.1699 0/1:19:16,3:16:600:3:122:-5.65292,0,-48.5999 dDocent_Contig_6896 122 . A G 459.666 . AB=0.62963;ABP=6.95112;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=35;DPB=35;DPRA=1.6875;EPP=39.9253;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=619;QR=658;RO=18;RPL=0;RPP=39.9253;RPPR=42.0968;RPR=17;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:2,11:2:74:11:397:-32.1589,0,-3.11249 0/0:8:8,0:8:294:0:0:0,-2.40824,-26.8125 0/1:14:8,6:8:290:6:222:-16.1236,0,-22.2342 dDocent_Contig_6897 22 . C T 2215.44 . AB=0.340541;ABP=43.8692;AC=3;AF=0.5;AN=6;AO=63;CIGAR=6M1X1M;DP=185;DPB=187.375;DPRA=0;EPP=139.813;EPPR=102.898;GTI=0;LEN=1;MEANALT=4.66667;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2527;QR=1823;RO=46;RPL=0;RPP=139.813;RPPR=102.898;RPR=63;RUN=1;SAF=63;SAP=139.813;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:66:8,10,0,2,18,27:8:314:10,0,2,18,27:373,0,81,691,1079:-117.36,-89.2361,-112.05,-119.768,-115.061,-145.593,-113.088,-108.381,-138.913,-138.311,-63.0585,-58.3524,-88.8834,-82.2035,-83.4648,-30.8878,-26.1823,-56.7154,-50.0348,0,-48.5876 0|1:52:10,9,5,3,5,20:10:397:9,5,3,5,20:339,197,119,200,811:-63.8777,-39.1199,-69.092,-50.6816,-55.5954,-81.859,-57.0928,-62.0064,-73.569,-88.8724,-50.4138,-55.3276,-66.8901,-73.3014,-81.5914,0,-4.91725,-16.4779,-22.8894,-16.2098,-26.6646 0|1:67:28,5,0,10,8,16:28:1112:5,0,10,8,16:200,0,378,315,637:-44.0233,-35.9762,-126.019,-52.4522,-127.524,-143.999,-21.478,-96.548,-113.023,-110.013,-26.5386,-101.611,-118.086,-87.1105,-115.678,0,-75.0745,-91.5501,-60.5746,-65.6367,-86.7336 dDocent_Contig_6898 16 . C A 494.831 . AB=0.328125;ABP=19.4321;AC=2;AF=0.333333;AN=6;AO=21;CIGAR=1X;DP=82;DPB=82;DPRA=1.77778;EPP=48.6112;EPPR=133.299;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=783;QR=2380;RO=60;RPL=0;RPP=48.6112;RPPR=133.299;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:719:0:0:0,-5.41854,-65.0382 0/1:21:7,13:7:278:13:483:-37.3944,0,-18.9794 0/1:43:35,8:35:1383:8:300:-14.4075,0,-111.783 dDocent_Contig_6900 115 . A C 252.82 . AB=0.254545;ABP=31.7922;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=55;DPB=55;DPRA=0;EPP=33.4109;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=478;QR=1353;RO=40;RPL=0;RPP=33.4109;RPPR=89.8692;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=89.8692;SRR=40;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:10,1:10:337:1:34:-0.0875811,0,-27.3455 0/1:9:6,3:6:198:3:104:-6.99382,0,-15.4348 0/1:35:24,10:24:818:10:340:-20.5999,0,-63.6187 dDocent_Contig_6901 14 . C A 125.066 . AB=0.230769;ABP=19.3799;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=40;DPB=40;DPRA=0.928571;EPP=16.0391;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=1367;RO=34;RPL=0;RPP=16.0391;RPPR=76.8404;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:5,3:5:190:3:123:-9.05655,0,-15.0547 0/1:18:15,3:15:606:3:120:-5.76877,0,-49.4599 0/0:14:14,0:14:571:0:0:0,-4.21442,-51.7319 dDocent_Contig_6902 9 . T A 4445.87 . AB=0.12549;ABP=313.667;AC=2;AF=0.333333;AN=6;AO=32;CIGAR=1M7I1M1X2M1X2M8D1M;DP=255;DPB=251.824;DPRA=0;EPP=72.4974;EPPR=63.8115;GTI=0;LEN=1;MEANALT=9.33333;MQM=57.9688;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=0.78125;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1240;QR=1101;RO=28;RPL=0;RPP=72.4974;RPPR=63.8115;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:90:11,16,7,0,44,2:11:434:16,7,0,44,2:618,279,0,1729,80:-153.935,-106.49,-137.385,-135.214,-120.17,-168.818,-157.246,-142.202,-170.926,-192.958,-15.0435,0,-28.7245,-50.7565,-37.5112,-150.656,-135.611,-164.335,-186.367,-44.1659,-185.765 0|0:62:10,8,7,2,27,0:10:388:8,7,2,27,0:304,275,81,1070,0:-85.0638,-64.4664,-93.9335,-65.4545,-73.7227,-95.2237,-81.3943,-89.6621,-90.6511,-112.669,0,-8.27204,-9.2569,-25.1978,-23.7504,-88.0741,-96.3417,-97.3309,-113.271,-31.8782,-119.95 1|0:103:7,8,3,7,63,7:7:279:8,3,7,63,7:318,118,276,2527,279:-209.304,-185.23,-205.798,-201.705,-198.499,-223.778,-188.705,-185.499,-201.974,-209.574,-3.20566,0,-16.4758,-3.4756,-7.21742,-188.437,-185.232,-201.707,-188.707,-3.2077,-209.307 dDocent_Contig_6903 11 . T C 794.566 . AB=0.247059;ABP=50.2462;AC=2;AF=0.333334;AN=6;AO=21;CIGAR=1X1M;DP=85;DPB=85;DPRA=0;EPP=48.6112;EPPR=68.1545;GTI=0;LEN=1;MEANALT=3;MQM=53.1905;MQMR=59.7667;NS=3;NUMALT=3;ODDS=1.38778e-17;PAIRED=0.904762;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=796;QR=1152;RO=30;RPL=0;RPP=48.6112;RPPR=68.1545;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:32:10,7,4,11:10:382:7,4,11:281,155,444:-33.5355,-16.3841,-45.6124,-23.9785,-35.1537,-54.1154,0,-11.1839,-18.7801,-28.0387 0|1:29:8,11,2,8:8:311:11,2,8:436,77,310:-33.4788,0,-22.2327,-29.5653,-19.222,-54.5053,-10.4624,-0.116943,-29.6817,-33.5951 0|0:24:12,3,7,2:12:459:3,7,2:116,276,42:-16.0605,-10.1273,-46.9281,0,-28.1853,-35.61,-17.0632,-45.21,-35.1019,-54.1365 dDocent_Contig_6904 9 . T C 143.704 . AB=0.133333;ABP=125.626;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=105;DPB=105;DPRA=0;EPP=33.4109;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=532;QR=3489;RO=91;RPL=0;RPP=33.4109;RPPR=200.614;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:40,4:40:1524:4:151:-0.71203,0,-124.189 0/1:20:15,5:15:575:5:186:-11.0784,0,-46.0715 0/1:41:36,5:36:1390:5:195:-5.58197,0,-113.04 dDocent_Contig_6905 14 . C A 46.1612 . AB=0.111111;ABP=73.9451;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=171;DPB=171;DPRA=0.923077;EPP=8.80089;EPPR=62.0875;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.7758;NS=3;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=0.254545;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=6052;RO=165;RPL=0;RPP=16.0391;RPPR=361.303;RPR=6;RUN=1;SAF=5;SAP=8.80089;SAR=1;SRF=116;SRP=62.0875;SRR=49;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:48,6:48:1728:6:238:-5.53693,0,-133.452 0/0:79:79,0:79:2884:0:0:0,-23.7814,-259.717 0/0:38:38,0:38:1440:0:0:0,-11.4391,-129.68 dDocent_Contig_6907 75 . G A 553.381 . AB=0.594595;ABP=5.88603;AC=2;AF=0.333333;AN=6;AO=24;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=55.1256;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=827;QR=1498;RO=44;RPL=24;RPP=55.1256;RPPR=98.5551;RPR=0;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:29,2:29:977:2:70:0,-2.6846,-81.5851 0/1:17:9,8:9:313:8:278:-20.2405,0,-23.3891 0/1:20:6,14:6:208:14:479:-37.4164,0,-13.039 dDocent_Contig_6908 49 . G A 144.909 . AB=0.259259;ABP=16.6021;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=45;DPB=45;DPRA=3;EPP=18.2106;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=261;QR=1492;RO=38;RPL=0;RPP=18.2106;RPPR=85.5263;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:433:0:0:0,-3.31133,-39.3247 0/0:7:7,0:7:276:0:0:0,-2.10721,-25.2067 0/1:27:20,7:20:783:7:261:-15.7127,0,-62.6595 dDocent_Contig_6909 10 . G T 682.819 . AB=0.15873;ABP=66.7413;AC=0;AF=0;AN=6;AO=10;CIGAR=2X2M1X;DP=72;DPB=72;DPRA=0;EPP=24.725;EPPR=48.6112;GTI=0;LEN=1;MEANALT=2.5;MQM=18;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=395;QR=815;RO=21;RPL=0;RPP=24.725;RPPR=48.6112;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:24:9,12,3:9:351:12,3:390,120:-26.0333,0,-25.3966,-24.8168,-25.112,-52.8043 0|0:39:11,20,7:11:424:20,7:541,275:-35.2793,0,-28.9002,-29.3973,-25.7841,-62.1504 0|0:9:1,8,0:1:40:8,0:168,0:-10.4748,0,-1.28641,-10.7758,-3.69465,-14.0953 dDocent_Contig_6910 12 . A G 1218.72 . AB=0.625;ABP=11.6962;AC=3;AF=0.5;AN=6;AO=40;CIGAR=1X;DP=64;DPB=64;DPRA=0;EPP=89.8692;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=51;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.833333;PAO=0;PQA=0;PQR=0;PRO=0;QA=1598;QR=955;RO=24;RPL=0;RPP=89.8692;RPPR=55.1256;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:4,7:4:160:7:284:-22.6227,0,-11.4721 0/1:25:12,13:12:480:13:515:-39.1682,0,-23.5072 0/1:28:8,20:8:315:20:799:-63.7979,0,-20.2856 dDocent_Contig_6911 71 . C A 39.9745 . AB=0.333333;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=76;DPB=76;DPRA=0.171429;EPP=7.35324;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.918919;PAO=0;PQA=0;PQR=0;PRO=0;QA=74;QR=2720;RO=74;RPL=1;RPP=3.0103;RPPR=4.06669;RPR=1;RUN=1;SAF=1;SAP=3.0103;SAR=1;SRF=34;SRP=4.06669;SRR=40;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:50:50,0:50:1843:0:0:0,-15.0515,-166.114 0/0:20:20,0:20:725:0:0:0,-6.0206,-65.5727 0/1:6:4,2:4:152:2:74:-5.21925,0,-12.2434 dDocent_Contig_6912 10 . G A 1204.65 . AB=0.308725;ABP=50.3601;AC=2;AF=0.333333;AN=6;AO=58;CIGAR=1X2M1X;DP=297;DPB=297;DPRA=0;EPP=128.956;EPPR=467.705;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2257;QR=8376;RO=214;RPL=0;RPP=128.956;RPPR=467.705;RPR=58;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=214;SRP=467.705;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:148:133,12,0:133:5213:12,0:466,0:0,-1.74594,-426.808,-40.037,-430.421,-468.707 0|1:53:27,23,2:27:1044:23,2:890,82:-64.9564,0,-78.8041,-66.3143,-78.9581,-151.46 0|1:96:54,23,19:54:2119:23,19:901,752:-57.8278,0,-167.33,-12.195,-112.367,-180.733 dDocent_Contig_6913 172 . A G 549.733 . AB=0.487179;ABP=3.06598;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=39;DPB=39;DPRA=0;EPP=44.2683;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=770;QR=690;RO=20;RPL=19;RPP=44.2683;RPPR=46.4397;RPR=0;RUN=1;SAF=0;SAP=44.2683;SAR=19;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:7,9:7:238:9:364:-28.3083,0,-16.9358 0/1:14:6,8:6:192:8:325:-25.4052,0,-13.3808 0/1:9:7,2:7:260:2:81:-4.97646,0,-21.0447 dDocent_Contig_6914 11 . A C 47.0524 . AB=0.333333;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=5M1X9M;DP=52;DPB=50.6;DPRA=0.333333;EPP=7.35324;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1710;RO=45;RPL=0;RPP=7.35324;RPPR=100.727;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:28:25,3,0,0:25:948:3,0,0:106,0,0:-0.936469,0,-77.2061,-8.46222,-78.1092,-86.2321,-8.46222,-78.1092,-86.2321,-86.2321 0|1:6:4,0,0,2:4:144:0,0,2:0,0,81:-5.87955,-7.08367,-18.8022,-7.08367,-18.8022,-18.8022,0,-12.1082,-12.1082,-11.5061 0|0:18:16,0,2,0:16:618:0,2,0:0,70,0:0,-4.81648,-55.7319,-1.4613,-52.6047,-52.0027,-4.81648,-55.7319,-52.6047,-55.7319 dDocent_Contig_6915 13 . G A 8665.29 . AB=0.115623;ABP=1867.65;AC=1;AF=0.166667;AN=6;AO=168;CIGAR=6M1X1M1D4M1X;DP=1453;DPB=1423.64;DPRA=0;EPP=367.818;EPPR=39.9253;GTI=0;LEN=1;MEANALT=78;MQM=31.6369;MQMR=60;NS=3;NUMALT=6;ODDS=0;PAIRED=0.0357143;PAIREDR=0.0588235;PAO=1;PQA=36;PQR=0;PRO=0;QA=4852;QR=667;RO=17;RPL=0;RPP=367.818;RPPR=39.9253;RPR=168;RUN=1;SAF=168;SAP=367.818;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:387:7,14,65,30,24,48,32:7:273:14,65,30,24,48,32:339,1923,850,501,1431,1189:-222.885,-202.438,-220.666,-83.0144,-82.904,-85.8902,-163.491,-163.38,-43.9571,-176.903,-192.668,-192.557,-73.135,-153.61,-207.886,-119.534,-119.423,0,-80.476,-109.654,-127.527,-131.191,-131.08,-11.6555,-92.1326,-121.31,-48.1749,-144.001 0|0:471:5,12,75,43,27,54,41:5:197:12,75,43,27,54,41:274,2142,1345,535,1516,1540:-262.619,-246.103,-258.699,-108.007,-106.195,-101.639,-163.856,-162.044,-23.9485,-167.121,-230.531,-228.718,-90.6242,-146.473,-238.612,-154.403,-152.591,-14.4964,-70.3448,-137.02,-154.357,-139.909,-138.097,0,-55.8497,-122.525,-46.3968,-143.776 0|0:595:5,38,100,48,37,66,57:5:197:38,100,48,37,66,57:1038,3078,1549,994,1905,2154:-384.742,-313.206,-317.975,-156.999,-100.167,-143.105,-268.373,-211.54,-55.333,-270.132,-314.485,-257.652,-101.446,-212.819,-319.555,-248.189,-191.357,-35.151,-146.523,-192.636,-244.53,-213.041,-156.208,0,-111.374,-157.487,-91.1911,-212.091 dDocent_Contig_6916 34 . G A 615.342 . AB=0.433962;ABP=5.01789;AC=2;AF=0.5;AN=4;AO=23;CIGAR=1X;DP=53;DPB=53;DPRA=0;EPP=52.9542;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=881;QR=1180;RO=30;RPL=0;RPP=52.9542;RPPR=68.1545;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:23,13:23:893:13:485:-33.1474,0,-69.8364 ./.:.:.:.:.:.:.:. 0/1:17:7,10:7:287:10:396:-30.8817,0,-21.0877 dDocent_Contig_6918 73 . A T 93.2144 . AB=0.208333;ABP=20.744;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=54;DPB=54;DPRA=1.6;EPP=13.8677;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.895833;PAO=0;PQA=0;PQR=0;PRO=0;QA=190;QR=1742;RO=48;RPL=5;RPP=13.8677;RPPR=107.241;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:19,5:19:694:5:190:-10.2422,0,-55.5631 0/0:22:22,0:22:795:0:0:0,-6.62266,-71.869 0/0:8:7,0:7:253:0:0:0,-2.10721,-22.7684 dDocent_Contig_6919 7 . A G 730.002 . AB=0.0780142;ABP=221.097;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X5M;DP=141;DPB=141;DPRA=0;EPP=26.8965;EPPR=163.699;GTI=0;LEN=1;MEANALT=4;MQM=56.7273;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=351;QR=2890;RO=74;RPL=0;RPP=26.8965;RPPR=163.699;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:43:24,7,4,7:24:930:7,4,7:258,151,210:-13.8869,0,-74.3332,-8.72697,-64.063,-83.9575,-4.39309,-59.7115,-68.4309,-78.6994 0|1:30:11,8,7,3:11:429:8,7,3:292,244,115:-20.5505,0,-32.8758,-4.02246,-15.4502,-37.1933,-14.418,-25.8432,-29.8605,-48.7948 0|1:68:39,7,20,1:39:1531:7,20,1:198,667,26:-42.2795,-38.5968,-162.451,0,-110.594,-119.992,-51.9828,-162.521,-123.976,-177.645 dDocent_Contig_6921 123 . G A 90.8644 . AB=0.666667;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=26;DPB=26;DPRA=0.6;EPP=11.6962;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=131;QR=757;RO=22;RPL=0;RPP=11.6962;RPPR=50.7827;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:210:0:0:0,-1.80618,-19.2425 0/1:6:2,4:2:64:4:131:-10.308,0,-4.27219 0/0:14:14,0:14:483:0:0:0,-4.21442,-43.799 dDocent_Contig_6922 92 . C T 44.3693 . AB=0.666667;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=18;DPB=18;DPRA=0.4;EPP=7.35324;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=554;RO=16;RPL=2;RPP=7.35324;RPPR=37.7539;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:309:0:0:0,-2.70927,-28.143 0/1:3:1,2:1:35:2:69:-5.64957,0,-2.59554 0/0:6:6,0:6:210:0:0:0,-1.80618,-19.2425 dDocent_Contig_6923 27 . A C 52.4135 . AB=0.235294;ABP=13.3567;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=44;DPB=44;DPRA=6.83333;EPP=13.8677;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.6667;NS=3;NUMALT=1;ODDS=0;PAIRED=0.6;PAIREDR=0.641026;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=1525;RO=39;RPL=0;RPP=13.8677;RPPR=87.6977;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:13,4:13:497:4:122:-6.16144,0,-39.0969 0/0:24:23,1:23:914:1:41:0,-3.13015,-76.1639 0/0:3:3,0:3:114:0:0:0,-0.90309,-10.6307 dDocent_Contig_6924 7 . A T 33.1985 . AB=0.157895;ABP=22.325;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=45;DPB=45;DPRA=1.46154;EPP=9.52472;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=110;QR=1598;RO=42;RPL=0;RPP=9.52472;RPPR=94.2121;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:905:0:0:0,-7.22472,-81.7672 0/1:19:16,3:16:617:3:110:-4.54004,0,-50.1504 0/0:2:2,0:2:76:0:0:0,-0.60206,-7.21467 dDocent_Contig_6925 12 . T A 43.3213 . AB=0.148148;ABP=32.0437;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=62;DPB=62;DPRA=1.13158;EPP=13.8677;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.912281;PAO=0;PQA=0;PQR=0;PRO=0;QA=189;QR=2269;RO=57;RPL=0;RPP=13.8677;RPPR=126.784;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:760:0:0:0,-5.71957,-68.7195 0/0:16:15,1:15:574:1:41:0,-0.721913,-47.8938 0/1:27:23,4:23:935:4:148:-5.55286,0,-76.323 dDocent_Contig_6926 23 . T C 190.52 . AB=0.466667;ABP=3.15506;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=20;DPB=20;DPRA=1.5;EPP=18.2106;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=505;RO=13;RPL=0;RPP=18.2106;RPPR=31.2394;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:2:1,1:1:34:1:40:-3.39362,0,-2.79685 0/0:5:5,0:5:185:0:0:0,-1.50515,-17.0052 0/1:13:7,6:7:286:6:239:-17.9698,0,-22.2014 dDocent_Contig_6927 124 . G A 692.049 . AB=0.75;ABP=13.8677;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1X3M1X5M;DP=57;DPB=57;DPRA=0;EPP=35.5824;EPPR=55.1256;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=508;QR=816;RO=24;RPL=0;RPP=35.5824;RPPR=55.1256;RPR=15;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:15:6,0,7,2:6:207:0,7,2:0,236,65:-17.3293,-19.1354,-35.9568,0,-16.8322,-14.7249,-13.8918,-30.7126,-11.5908,-30.1106 0|0:22:18,0,0,4:18:609:0,0,4:0,0,142:-6.50653,-11.9251,-61.2851,-11.9251,-61.2851,-61.2851,0,-49.7119,-49.7119,-48.5077 1|0:20:0,15,3,2:0:0:15,3,2:508,98,72:-49.0828,-7.89424,-3.37879,-41.1708,0,-40.2677,-43.2058,-2.00619,-35.2936,-42.6037 dDocent_Contig_6928 26 . T A 47.5749 . AB=0.166667;ABP=20.3821;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=31;DPB=31;DPRA=2.76923;EPP=9.52472;EPPR=34.0313;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.714286;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=1080;RO=28;RPL=0;RPP=9.52472;RPPR=22.8638;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=24;SRP=34.0313;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:15,3:15:568:3:119:-5.67685,0,-46.0352 0/0:2:2,0:2:79:0:0:0,-0.60206,-7.49724 0/0:11:11,0:11:433:0:0:0,-3.31133,-39.3211 dDocent_Contig_6929 8 . A C 1068.89 . AB=0.679245;ABP=17.8009;AC=1;AF=0.166667;AN=6;AO=36;CIGAR=1X;DP=118;DPB=118;DPRA=1.63077;EPP=81.1833;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.972222;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1372;QR=3127;RO=82;RPL=0;RPP=81.1833;RPPR=181.071;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:17,36:17:655:36:1372:-107.81,0,-43.3325 0/0:22:22,0:22:839:0:0:0,-6.62266,-75.8317 0/0:43:43,0:43:1633:0:0:0,-12.9443,-147.235 dDocent_Contig_6931 119 . A G 81.424 . AB=0.263158;ABP=12.2676;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=31;DPB=31;DPRA=3.16667;EPP=13.8677;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=892;RO=26;RPL=0;RPP=13.8677;RPPR=59.4686;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:310:0:0:0,-2.70927,-28.2342 0/1:19:14,5:14:480:5:164:-9.36352,0,-37.8075 0/0:3:3,0:3:102:0:0:0,-0.90309,-9.5168 dDocent_Contig_6932 160 . G A 58.4932 . AB=0.173913;ABP=24.253;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=27;DPB=27;DPRA=2.875;EPP=11.6962;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=898;RO=23;RPL=4;RPP=11.6962;RPPR=52.9542;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:283:2:81:-4.97646,0,-23.1337 0/1:14:12,2:12:452:2:78:-3.18888,0,-36.7947 0/0:4:4,0:4:163:0:0:0,-1.20412,-15.0584 dDocent_Contig_6933 28 . C T 574.717 . AB=0.269663;ABP=44.0243;AC=3;AF=0.5;AN=6;AO=24;CIGAR=2X;DP=89;DPB=89;DPRA=0;EPP=55.1256;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=959;QR=2587;RO=65;RPL=0;RPP=55.1256;RPPR=144.156;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:32:27,5:27:1077:5:195:-8.28929,0,-87.5846 0|1:34:31,3:31:1227:3:119:-0.85948,0,-100.473 0|1:23:7,16:7:283:16:645:-51.4611,0,-18.9197 dDocent_Contig_6934 19 . G A 38.7158 . AB=0.119048;ABP=55.9529;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=93;DPB=93;DPRA=1.64706;EPP=13.8677;EPPR=130.93;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=56.6818;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.852273;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=3424;RO=88;RPL=0;RPP=13.8677;RPPR=194.1;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=80;SRP=130.93;SRR=8;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:536:0:0:0,-4.21442,-48.5789 0/1:42:37,5:37:1444:5:193:-5.09337,0,-114.61 0/0:37:37,0:37:1444:0:0:0,-11.1381,-126.602 dDocent_Contig_6935 29 . T A 677.409 . AB=0.390625;ABP=9.66043;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=64;DPB=64;DPRA=0;EPP=57.2971;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=996;QR=1532;RO=39;RPL=0;RPP=57.2971;RPPR=87.6977;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:5,3:5:197:3:115:-8.31624,0,-15.698 0/1:21:15,6:15:588:6:238:-15.4722,0,-46.9372 0/1:35:19,16:19:747:16:643:-47.6692,0,-57.0153 dDocent_Contig_6936 10 . C A 513.991 . AB=0.244444;ABP=54.064;AC=2;AF=0.333333;AN=6;AO=24;CIGAR=1X;DP=144;DPB=144;DPRA=0;EPP=55.1256;EPPR=263.587;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.991667;PAO=0;PQA=0;PQR=0;PRO=0;QA=972;QR=4753;RO=120;RPL=0;RPP=55.1256;RPPR=263.587;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:51,8:51:2019:8:324:-11.7675,0,-164.144 0/0:54:52,2:52:2053:2:82:0,-8.47594,-177.185 0/1:31:17,14:17:681:14:566:-41.9504,0,-52.286 dDocent_Contig_6937 11 . C A 198.916 . AB=0.192982;ABP=49.6779;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X3M1X;DP=57;DPB=57;DPRA=0;EPP=26.8965;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=440;QR=1821;RO=46;RPL=0;RPP=26.8965;RPPR=102.898;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:7:3,4:3:121:4:163:-12.9512,0,-9.17299 0|1:21:17,4:17:663:4:157:-8.18687,0,-53.6781 0|1:29:26,3:26:1037:3:120:-2.45782,0,-84.8949 dDocent_Contig_6938 9 . T G 380.234 . AB=0.0606061;ABP=58.3499;AC=3;AF=0.5;AN=6;AO=2;CIGAR=2M1X5M;DP=103;DPB=104.875;DPRA=0;EPP=7.35324;EPPR=120.27;GTI=0;LEN=1;MEANALT=5;MQM=40;MQMR=60;NS=3;NUMALT=6;ODDS=1.38778e-17;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=2110;RO=54;RPL=0;RPP=7.35324;RPPR=120.27;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:30:13,1,6,7,0,2,0:13:510:1,6,7,0,2,0:39,214,203,0,73,0:-13.5548,-14.2572,-55.9392,0,-38.7951,-40.1969,-2.72055,-41.4886,-27.2577,-42.5882,-17.4682,-56.2402,-42.003,-44.6955,-59.4477,-14.1494,-52.9188,-38.6835,-41.379,-56.126,-55.5239,-17.4682,-56.2402,-42.003,-44.6955,-59.4477,-56.126,-59.4477 0|1:33:12,10,1,3,5,0,2:12:471:10,1,3,5,0,2:368,34,82,192,0,77:-25.9897,0,-35.7562,-26.8445,-36.0097,-65.2972,-23.9522,-33.1174,-59.9434,-61.797,-13.8591,-23.0294,-49.8627,-46.9666,-51.1148,-29.602,-38.7665,-65.5983,-62.7001,-52.6199,-68.3555,-23.6924,-32.8586,-59.6903,-56.7929,-46.7116,-62.4474,-61.8453 0|1:40:29,4,3,2,0,0,0:29:1129:4,3,2,0,0,0:136,111,50,0,0,0:-2.16943,0,-91.6449,-1.79963,-83.7686,-93.7513,-7.56406,-89.5008,-91.3056,-99.7836,-10.8993,-92.849,-94.6543,-100.386,-103.735,-10.8993,-92.849,-94.6543,-100.386,-103.735,-103.735,-10.8993,-92.849,-94.6543,-100.386,-103.735,-103.735,-103.735 dDocent_Contig_6939 11 . C A 1414.12 . AB=0.0930233;ABP=64.872;AC=0;AF=0;AN=6;AO=4;CIGAR=1X2M1X1M1X;DP=116;DPB=116;DPRA=0;EPP=3.0103;EPPR=48.6112;GTI=0;LEN=1;MEANALT=4;MQM=11;MQMR=60;NS=3;NUMALT=6;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=794;RO=21;RPL=0;RPP=11.6962;RPPR=48.6112;RPR=4;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:43:11,0,4,13,6,0,9:11:416:0,4,13,6,0,9:0,119,514,237,0,361:-38.7665,-42.0778,-76.184,-39.3944,-73.4911,-72.287,0,-34.1176,-31.4357,-30.2042,-22.5664,-56.676,-53.9873,-14.6034,-54.8698,-42.0778,-76.184,-73.4911,-34.1176,-56.676,-76.184,-13.2603,-47.372,-44.686,-5.29544,-27.8608,-47.372,-44.6627 0|0:36:6,5,0,10,8,2,4:6:220:5,0,10,8,2,4:196,0,384,317,72,163:-37.5693,-23.9339,-40.4068,-39.3755,-41.9119,-57.353,-8.12962,-10.6657,-26.1092,-23.0989,-13.2715,-15.8078,-31.2516,0,-28.8433,-37.4804,-40.0162,-55.4552,-24.2163,-29.3571,-54.8531,-27.5715,-30.1077,-45.549,-14.3042,-19.4462,-43.6529,-44.3449 0|0:37:4,0,0,11,5,2,15:4:158:0,0,11,5,2,15:0,0,438,204,80,600:-68.7932,-69.9973,-83.0012,-69.9973,-83.0012,-83.0012,-34.5436,-47.5495,-47.5495,-44.2382,-53.1603,-66.1652,-66.1652,-30.7098,-64.6601,-68.0965,-81.0988,-81.0988,-45.6529,-64.2648,-80.4968,-22.4579,-35.4646,-35.4646,0,-18.623,-33.5719,-30.9492 dDocent_Contig_6940 136 . G A 55.7543 . AB=0.139423;ABP=237.905;AC=2;AF=0.333333;AN=6;AO=35;CIGAR=1X;DP=293;DPB=293;DPRA=0;EPP=79.0118;EPPR=563.25;GTI=0;LEN=1;MEANALT=1;MQM=39.0857;MQMR=38.6395;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.166667;PAO=0;PQA=0;PQR=0;PRO=0;QA=1240;QR=9253;RO=258;RPL=0;RPP=79.0118;RPPR=563.25;RPR=35;RUN=1;SAF=0;SAP=79.0118;SAR=35;SRF=0;SRP=563.25;SRR=258;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:114:101,13:101:3682:13:467:-3.93675,0,-259.564 0/0:85:79,6:79:2770:6:203:0,-7.23448,-168.64 0/1:94:78,16:78:2801:16:570:-3.95662,0,-152.216 dDocent_Contig_6942 71 . A C 134.268 . AB=0.384615;ABP=4.51363;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=53;DPB=53;DPRA=0.65;EPP=13.8677;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=1844;RO=48;RPL=5;RPP=13.8677;RPPR=107.241;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:709:0:0:0,-5.41854,-64.1366 0/1:13:8,5:8:285:5:202:-14.6487,0,-22.0758 0/0:22:22,0:22:850:0:0:0,-6.62266,-76.8161 dDocent_Contig_6943 58 . T A 589.428 . AB=0.477273;ABP=3.20771;AC=2;AF=0.333333;AN=6;AO=22;CIGAR=1X;DP=61;DPB=61;DPRA=0;EPP=50.7827;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=861;QR=1555;RO=39;RPL=22;RPP=50.7827;RPPR=87.6977;RPR=0;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:16,1:16:641:1:41:0,-1.02294,-53.9293 0/1:9:6,3:6:225:3:118:-8.29324,0,-17.8954 0/1:35:17,18:17:689:18:702:-52.9678,0,-51.8034 dDocent_Contig_6944 29 . A T 118.473 . AB=0.666667;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=35;DPB=35;DPRA=0.413793;EPP=11.6962;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=1215;RO=31;RPL=0;RPP=11.6962;RPPR=70.3259;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:674:0:0:0,-5.11751,-60.9909 0/0:12:12,0:12:460:0:0:0,-3.61236,-41.744 0/1:6:2,4:2:81:4:161:-13.0691,0,-5.87955 dDocent_Contig_6945 15 . G T 159.452 . AB=0.333333;ABP=8.07707;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=55;DPB=55;DPRA=0;EPP=20.3821;EPPR=80.6751;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.5745;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.914894;PAO=0;PQA=0;PQR=0;PRO=0;QA=306;QR=1822;RO=47;RPL=0;RPP=20.3821;RPPR=105.07;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=44;SRP=80.6751;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:33,1:33:1271:1:41:0,-6.14045,-109.264 0/1:9:6,3:6:236:3:115:-8.01483,0,-18.9025 0/1:12:8,4:8:315:4:150:-10.2491,0,-25.1012 dDocent_Contig_6947 121 . T G 88.5688 . AB=0.25;ABP=13.8677;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=38;DPB=38;DPRA=2.21429;EPP=16.0391;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=208;QR=1080;RO=32;RPL=0;RPP=16.0391;RPPR=72.4974;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=72.4974;SRR=32;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:232:0:0:0,-2.10721,-21.2055 0/0:11:10,1:10:343:1:33:0,-0.0121951,-27.9026 0/1:20:15,5:15:505:5:175:-10.0731,0,-39.7506 dDocent_Contig_6948 12 . C T 1290.71 . AB=0.125;ABP=90.9549;AC=0;AF=0;AN=6;AO=9;CIGAR=1X1M1X;DP=143;DPB=143;DPRA=0;EPP=22.5536;EPPR=189.757;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.666667;PAIREDR=0.813953;PAO=0;PQA=0;PQR=0;PRO=0;QA=352;QR=3421;RO=86;RPL=0;RPP=22.5536;RPPR=189.757;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:72:27,9,36:27:1075:9,36:352,1423:-108.96,-88.151,-173.961,0,-59.5876,-77.686 0|0:46:36,0,10:36:1427:0,10:0,399:-22.4214,-33.2585,-150.715,0,-117.855,-114.845 0|0:25:23,0,2:23:919:0,2:0,81:-0.159984,-7.08367,-82.7706,0,-76.091,-75.489 dDocent_Contig_6949 28 . G A 166.796 . AB=0.137931;ABP=102.074;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=107;DPB=107;DPRA=2.175;EPP=29.068;EPPR=124.818;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.5368;NS=3;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=0.778947;PAO=0;PQA=0;PQR=0;PRO=0;QA=484;QR=3681;RO=95;RPL=0;RPP=29.068;RPPR=209.3;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=84;SRP=124.818;SRR=11;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:34,3:34:1299:3:122:-0.234383,0,-104.847 0/1:50:41,9:41:1604:9:362:-17.8916,0,-129.141 0/0:20:20,0:20:778:0:0:0,-6.0206,-68.7377 dDocent_Contig_6950 159 . A G 172.607 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=26;DPB=26;DPRA=1.71429;EPP=16.0391;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=804;RO=20;RPL=6;RPP=16.0391;RPPR=46.4397;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:6,6:6:243:6:238:-18.1814,0,-18.6358 0/0:6:6,0:6:238:0:0:0,-1.80618,-21.7927 0/0:8:8,0:8:323:0:0:0,-2.40824,-29.4392 dDocent_Contig_6951 15 . C T 376.022 . AB=0.0672515;ABP=559.314;AC=1;AF=0.166667;AN=6;AO=23;CIGAR=1M1X4M;DP=342;DPB=346.5;DPRA=0;EPP=52.9542;EPPR=482.906;GTI=0;LEN=1;MEANALT=7.66667;MQM=59.9565;MQMR=55.7104;NS=3;NUMALT=6;ODDS=0;PAIRED=1;PAIREDR=0.995475;PAO=0;PQA=0;PQR=0;PRO=0;QA=917;QR=8633;RO=221;RPL=0;RPP=52.9542;RPPR=482.906;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=221;SRP=482.906;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:123:87,8,11,2,2,0,11:87:3394:8,11,2,2,0,11:317,421,80,81,0,441:-10.1483,-10.2431,-282.303,-2.6888,-251.058,-273.839,-29.7469,-278.121,-270.56,-303.612,-29.6577,-278.032,-270.471,-297.534,-303.523,-36.3379,-284.712,-277.151,-304.214,-304.125,-310.804,0,-248.378,-240.818,-267.881,-267.792,-274.471,-271.16 0|1:114:64,4,11,14,10,6,2:64:2498:4,11,14,10,6,2:158,434,551,387,240,82:-26.0583,-32.3215,-230.837,-10.4231,-197.14,-206.831,0,-186.718,-164.819,-195.507,-13.5397,-200.257,-178.358,-167.936,-210.249,-25.5525,-212.27,-190.371,-179.95,-193.488,-223.467,-38.5551,-225.272,-203.374,-192.952,-206.49,-218.504,-237.673 0|0:105:70,4,5,7,3,0,8:70:2741:4,5,7,3,0,8:161,197,286,116,0,318:-5.1116,-12.9131,-234.84,-10.3659,-220.226,-231.99,-2.57906,-212.443,-209.894,-223.605,-16.6577,-226.518,-223.969,-216.186,-238.884,-26.1837,-236.044,-233.495,-225.712,-239.787,-249.313,0,-209.862,-207.313,-199.53,-213.605,-223.132,-220.723 dDocent_Contig_6952 15 . A C 183.18 . AB=0.133333;ABP=38.0434;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=3X2M2X1M2X;DP=35;DPB=35;DPRA=3;EPP=11.6962;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1.5;MQM=51.75;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=990;RO=25;RPL=0;RPP=11.6962;RPPR=57.2971;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:5:4,0,0:4:157:0,0:0,0:0,-1.20412,-14.2943,-1.20412,-14.2943,-14.2943 0|1:15:12,3,0:12:474:3,0:118,0:-6.48727,0,-38.4968,-10.0996,-39.3999,-49.1063 0|0:15:9,1,5:9:359:1,5:38,203:-14.1488,-14.7821,-44.0428,0,-27.5989,-28.1798 dDocent_Contig_6953 149 . C T 782.36 . AB=0.5625;ABP=4.6389;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1X;DP=48;DPB=48;DPRA=0;EPP=61.6401;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1059;QR=816;RO=21;RPL=0;RPP=61.6401;RPPR=48.6112;RPR=27;RUN=1;SAF=0;SAP=61.6401;SAR=27;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:12,20:12:459:20:779:-60.801,0,-32.0197 0/1:9:7,2:7:276:2:79:-4.78836,0,-22.5003 0/1:7:2,5:2:81:5:201:-16.3633,0,-5.57852 dDocent_Contig_6954 34 . G A 49.644 . AB=0.1875;ABP=16.582;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=48;DPB=48;DPRA=1;EPP=9.52472;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=1783;RO=45;RPL=0;RPP=9.52472;RPPR=100.727;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:473:0:0:0,-3.61236,-42.92 0/1:16:13,3:13:509:3:118:-6.18624,0,-41.3382 0/0:20:20,0:20:801:0:0:0,-6.0206,-72.4051 dDocent_Contig_6955 9 . T G 63.7344 . AB=0.121212;ABP=44.1367;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1M4I3M3X1M1X1M;DP=40;DPB=48.7;DPRA=2.35714;EPP=11.6962;EPPR=35.5824;GTI=0;LEN=1;MEANALT=5;MQM=27;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=108;QR=581;RO=15;RPL=0;RPP=11.6962;RPPR=35.5824;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:24:7,1,3,0,7,3:7:272:1,3,0,7,3:27,81,0,274,36:-4.55572,-4.80197,-26.9109,-1.07897,-21.639,-22.5935,-6.66293,-27.212,-23.4965,-29.0698,0,-20.5577,-16.8503,-22.4123,-20.3051,-5.1244,-25.6748,-21.9624,-27.5314,-20.8957,-26.6283 0|0:7:5,0,0,0,1,1:5:191:0,0,0,1,1:0,0,0,40,7:0,-1.50515,-17.3834,-1.50515,-17.3834,-17.3834,-1.50515,-17.3834,-17.3834,-17.3834,-0.499404,-16.4518,-16.4518,-16.4518,-16.1508,-1.45375,-17.3267,-17.3267,-17.3267,-16.4089,-17.0256 0|1:9:3,2,1,2,1,0:3:118:2,1,2,1,0:68,27,77,40,0:-4.12149,0,-9.20252,-3.16081,-7.94993,-12.636,-3.14601,-7.93843,-11.0676,-12.3121,-4.08122,-8.86701,-11.9986,-11.9847,-13.5489,-5.02458,-9.80458,-12.937,-12.9141,-13.85,-14.7913 dDocent_Contig_6956 16 . T C 61.4496 . AB=0.230769;ABP=11.1951;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=45;DPB=45;DPRA=0.8125;EPP=9.52472;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1678;RO=42;RPL=0;RPP=9.52472;RPPR=94.2121;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:803:0:0:0,-6.0206,-72.5875 0/1:13:10,3:10:399:3:121:-7.36681,0,-32.355 0/0:12:12,0:12:476:0:0:0,-3.61236,-43.1882 dDocent_Contig_6957 39 . A G 171.897 . AB=0.266667;ABP=17.1973;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=90;DPB=90;DPRA=0;EPP=29.068;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=454;QR=3089;RO=78;RPL=0;RPP=29.068;RPPR=172.385;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:25,2:25:1005:2:75:0,-1.00747,-83.6268 0/1:30:22,8:22:851:8:301:-18.4109,0,-67.8655 0/0:33:31,2:31:1233:2:78:0,-2.53069,-103.844 dDocent_Contig_6959 11 . T A 809.634 . AB=0.612245;ABP=8.37251;AC=2;AF=0.333333;AN=6;AO=30;CIGAR=1X;DP=62;DPB=62;DPRA=1.88462;EPP=68.1545;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1082;QR=1283;RO=32;RPL=0;RPP=68.1545;RPPR=72.4974;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:514:0:0:0,-3.91339,-46.6064 0/1:22:15,7:15:606:7:238:-15.1261,0,-48.2546 0/1:27:4,23:4:163:23:844:-68.1561,0,-6.93062 dDocent_Contig_6960 12 . G A 4315.37 . AB=0.384422;ABP=49.1896;AC=3;AF=0.5;AN=6;AO=153;CIGAR=2M1X2M;DP=398;DPB=375;DPRA=0;EPP=335.246;EPPR=248.387;GTI=0;LEN=1;MEANALT=9.33333;MQM=52.6601;MQMR=59.7345;NS=3;NUMALT=4;ODDS=0;PAIRED=0.326797;PAIREDR=0.513274;PAO=0;PQA=0;PQR=0;PRO=0;QA=5821;QR=4381;RO=113;RPL=0;RPP=335.246;RPPR=248.387;RPR=153;RUN=1;SAF=153;SAP=335.246;SAR=0;SRF=113;SRP=248.387;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:139:51,8,0,17,46:51:1957:8,0,17,46:294,0,486,1796:-129.541,-120.892,-278.756,-144.893,-281.165,-305.164,-109.85,-246.115,-270.114,-264.996,0,-136.296,-160.297,-125.252,-146.449 0|1:140:33,4,0,19,70:33:1286:4,0,19,70:158,0,606,2624:-201.828,-198.772,-303.278,-211.762,-304.482,-317.472,-166.581,-259.301,-272.29,-266.571,0,-92.7521,-105.744,-60.5687,-84.6714 0|1:119:29,13,14,22,37:29:1138:13,14,22,37:462,561,464,1401:-103.886,-75.9027,-165.6,-67.8576,-124.76,-157.257,-82.3334,-139.228,-131.184,-169.309,0,-56.9152,-48.8692,-63.3525,-82.4899 dDocent_Contig_6961 23 . T C 413.929 . AB=0.0666667;ABP=51.9408;AC=0;AF=0;AN=6;AO=2;CIGAR=1X1M1X1M2X;DP=54;DPB=54;DPRA=6;EPP=7.35324;EPPR=81.1833;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=1401;RO=36;RPL=0;RPP=7.35324;RPPR=81.1833;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:30:16,2,12:16:610:2,12:76,480:-34.7394,-33.3263,-82.7489,0,-43.8041,-46.4241 0|0:5:5,0,0:5:197:0,0:0,0:0,-1.50515,-18.1066,-1.50515,-18.1066,-18.1066 0|0:19:15,0,4:15:594:0,4:0,159:-8.97187,-13.4873,-62.3751,0,-49.2845,-48.0804 dDocent_Contig_6962 129 . C A 1108.38 . AB=0.488372;ABP=3.0608;AC=4;AF=0.666667;AN=6;AO=51;CIGAR=1X;DP=75;DPB=75;DPRA=0;EPP=113.755;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1.33333;MQM=30.6078;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1748;QR=769;RO=23;RPL=0;RPP=113.755;RPPR=52.9542;RPR=51;RUN=1;SAF=0;SAP=113.755;SAR=51;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:32:2,30:2:68:30:1025:-73.6768,-3.17503,0 0/1:20:11,8:11:360:8:268:-12.9931,0,-26.6568 0/1:23:10,13:10:341:13:455:-26.4868,0,-24.0971 dDocent_Contig_6963 22 . G A 43.5814 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=37;DPB=37;DPRA=0.466667;EPP=7.35324;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1381;RO=35;RPL=0;RPP=7.35324;RPPR=79.0118;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:1104:0:0:0,-8.42884,-99.6526 0/1:7:5,2:5:199:2:81:-5.57852,0,-16.1795 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.4033 dDocent_Contig_6965 199 . A G 211.794 . AB=0.444444;ABP=3.49285;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=29;DPB=29;DPRA=0.818182;EPP=20.3821;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=308;QR=817;RO=21;RPL=8;RPP=20.3821;RPPR=48.6112;RPR=0;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:2,7:2:78:7:271:-22.0472,0,-4.6942 0/0:11:11,0:11:427:0:0:0,-3.31133,-38.7851 0/1:9:8,1:8:312:1:37:-0.988559,0,-25.7356 dDocent_Contig_6966 16 . T G 490.79 . AB=0.322581;ABP=19.9618;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X2M;DP=62;DPB=62;DPRA=0;EPP=46.4397;EPPR=76.8404;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=760;QR=1352;RO=34;RPL=0;RPP=46.4397;RPPR=76.8404;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:9:3,2,4:3:121:2,4:79,127:-9.26478,-3.64114,-13.05,0,-3.48154,-8.77507 0|1:13:5,4,4:5:202:4,4:160,152:-11.6851,0,-15.4625,-0.73554,-4.21258,-16.187 0|1:40:26,0,12:26:1029:0,12:0,481:-31.8199,-39.6466,-124.326,0,-84.6952,-81.0829 dDocent_Contig_6968 8 . A G 64.9275 . AB=0.3;ABP=6.48466;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=56;DPB=56;DPRA=0.434783;EPP=9.52472;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=2053;RO=53;RPL=0;RPP=9.52472;RPPR=118.098;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:814:0:0:0,-6.32163,-73.5853 0/1:10:7,3:7:271:3:115:-7.71459,0,-21.746 0/0:25:25,0:25:968:0:0:0,-7.52575,-87.4338 dDocent_Contig_6969 16 . C T 280.37 . AB=0.272727;ABP=7.94546;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=2X;DP=39;DPB=39;DPRA=0;EPP=9.52472;EPPR=57.2971;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=110;QR=986;RO=25;RPL=0;RPP=9.52472;RPPR=57.2971;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:11:7,3,1:7:273:3,1:110,41:-6.85157,0,-21.5179,-5.56394,-19.0344,-27.7175 0|0:14:10,0,4:10:387:0,4:0,162:-10.7525,-13.7628,-45.5386,0,-32.1751,-30.971 0|0:14:8,0,5:8:326:0,5:0,201:-14.1496,-16.5578,-43.4548,0,-26.8924,-25.3873 dDocent_Contig_6970 98 . N T 222.09 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=7;CIGAR=3X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=8.07091;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=0;RO=0;RPL=7;RPP=18.2106;RPPR=0;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:7:0,7:0:0:7:243:-22.2089,-2.10721,0 .:.:.:.:.:.:.:. dDocent_Contig_6972 25 . G T 31.3495 . AB=0.130435;ABP=30.2953;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=40;DPB=40;DPRA=2.70588;EPP=9.52472;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1486;RO=37;RPL=0;RPP=9.52472;RPPR=83.3548;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:488:0:0:0,-3.61236,-44.2715 0/1:23:20,3:20:797:3:121:-4.3563,0,-65.1245 0/0:5:5,0:5:201:0:0:0,-1.50515,-18.4707 dDocent_Contig_6974 10 . A G 2150.5 . AB=0.140049;ABP=461.042;AC=3;AF=0.5;AN=6;AO=57;CIGAR=1X17M;DP=407;DPB=408.778;DPRA=0;EPP=126.784;EPPR=102.898;GTI=0;LEN=1;MEANALT=27.3333;MQM=60;MQMR=60;NS=3;NUMALT=8;ODDS=2.22045e-16;PAIRED=0.824561;PAIREDR=1;PAO=0.625;PQA=24.75;PQR=24.75;PRO=0.625;QA=2270;QR=1766;RO=46;RPL=0;RPP=126.784;RPPR=102.898;RPR=57;RUN=1;SAF=57;SAP=126.784;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:120:23,3,2,6,6,11,8,10,11:23:884:3,2,6,6,11,8,10,11:119,80,221,236,394,314,371,437:-29.0523,-26.1795,-97.8436,-29.3854,-92.1562,-101.351,-18.0095,-80.78,-83.986,-88.7702,-16.5959,-79.3667,-82.5727,-71.1965,-87.357,-3.84891,-66.6191,-69.825,-58.449,-57.0356,-73.1041,-10.1506,-72.9215,-76.1274,-64.7513,-63.3379,-50.5904,-80.3097,-5.6196,-68.3901,-71.596,-60.22,-58.8066,-46.0592,-52.3613,-75.1762,0,-62.7711,-65.9771,-54.6009,-53.1875,-40.44,-46.7422,-42.211,-69.2563 0|1:165:16,9,4,0,9,4,9,11,34:16:607:9,4,0,9,4,9,11,34:350,156,0,355,140,345,369,1361:-107.308,-83.3611,-130.415,-99.3012,-120.301,-147.86,-112.124,-133.124,-149.064,-161.887,-82.9963,-103.996,-119.936,-132.759,-130.05,-100.735,-121.735,-137.675,-150.498,-121.37,-149.294,-83.8109,-104.811,-120.751,-133.574,-104.446,-122.185,-130.865,-82.2478,-103.248,-119.188,-132.01,-102.883,-120.622,-103.697,-128.699,0,-21.0001,-36.9405,-49.7636,-20.6352,-38.3746,-21.4499,-19.8874,-39.5286 1|0:122:7,16,16,1,2,3,17,5,12:7:275:16,16,1,2,3,17,5,12:615,633,40,81,109,672,164,472:-82.3998,-34.0193,-51.8224,-32.6813,-4.81314,-50.4845,-81.2141,-53.3459,-52.008,-103.533,-77.8531,-49.985,-48.647,-97.1797,-99.8706,-75.6063,-47.7383,-46.4003,-94.9329,-91.572,-97.3227,-29.2064,-1.3382,0,-48.5331,-45.1721,-42.9254,-46.7086,-71.2603,-43.3925,-42.0545,-90.5868,-87.2259,-84.9791,-38.5796,-92.3746,-45.6853,-17.8171,-16.479,-65.0119,-61.651,-59.4042,-13.0041,-55.0583,-64.6925 dDocent_Contig_6975 27 . A G 797.088 . AB=0.432836;ABP=5.63551;AC=2;AF=0.333333;AN=6;AO=29;CIGAR=1X;DP=80;DPB=80;DPRA=2.57692;EPP=65.983;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1128;QR=1974;RO=51;RPL=0;RPP=65.983;RPPR=113.755;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:25,17:25:976:17:659:-46.9942,0,-75.4998 0/0:13:13,0:13:509:0:0:0,-3.91339,-46.1559 0/1:25:13,12:13:489:12:469:-35.0334,0,-36.8179 dDocent_Contig_6976 20 . C T 133.928 . AB=0.107784;ABP=226.152;AC=3;AF=0.5;AN=6;AO=18;CIGAR=2X;DP=167;DPB=167;DPRA=0;EPP=42.0968;EPPR=309.188;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=59.9574;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=0.888889;PAIREDR=0.914894;PAO=0;PQA=0;PQR=0;PRO=0;QA=714;QR=5519;RO=141;RPL=0;RPP=42.0968;RPPR=309.188;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=141;SRP=309.188;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:69:61,8,0:61:2395:8,0:320,0:-8.39631,0,-194.946,-26.7591,-197.354,-223.714 0|1:66:52,6,5:52:2010:6,5:242,203:-4.2967,0,-163.254,-3.20492,-148.316,-166.761 0|1:32:28,4,0:28:1114:4,0:152,0:-4.41607,0,-90.9153,-12.8449,-92.1194,-104.582 dDocent_Contig_6977 129 . A T 56.6111 . AB=0.3125;ABP=7.89611;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=21;DPB=21;DPRA=1.6;EPP=13.8677;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=28.8;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=166;QR=557;RO=16;RPL=0;RPP=13.8677;RPPR=37.7539;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:10,3:10:347:3:96:-3.54726,0,-27.6518 0/1:3:1,2:1:35:2:70:-4.42221,0,-2.59554 0/0:5:5,0:5:175:0:0:0,-1.50515,-16.0937 dDocent_Contig_6979 7 . A G 86.6037 . AB=0.212121;ABP=26.7649;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X;DP=33;DPB=33;DPRA=0;EPP=18.2106;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=51.4286;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=994;RO=26;RPL=0;RPP=18.2106;RPPR=59.4686;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:11,3:11:420:3:116:-6.55843,0,-33.9379 0/1:8:6,2:6:226:2:72:-4.38006,0,-18.2942 0/1:11:9,2:9:348:2:44:-0.865091,0,-28.369 dDocent_Contig_6980 17 . G T 83.526 . AB=0.222222;ABP=15.074;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=75;DPB=75;DPRA=0.631579;EPP=11.6962;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=2844;RO=71;RPL=0;RPP=11.6962;RPPR=157.185;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:14,4:14:556:4:159:-9.27341,0,-44.9631 0/0:30:30,0:30:1187:0:0:0,-9.0309,-107.111 0/0:27:27,0:27:1101:0:0:0,-8.12781,-99.371 dDocent_Contig_6981 107 . N A 154.514 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=168;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:5:0,5:0:0:5:168:-15.4509,-1.50515,0 dDocent_Contig_6982 11 . A T 630.841 . AB=0.136364;ABP=28.2783;AC=0;AF=0;AN=6;AO=3;CIGAR=1X2M1I1X2M3X;DP=110;DPB=112.222;DPRA=0;EPP=9.52472;EPPR=131.127;GTI=0;LEN=1;MEANALT=4;MQM=29.6667;MQMR=59.339;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.949153;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=2346;RO=59;RPL=0;RPP=9.52472;RPPR=131.127;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:22:9,3,5,4:9:353:3,5,4:121,102,148:-8.79207,-4.52395,-32.7232,-5.21978,-27.3457,-32.7936,0,-22.1589,-22.8412,-27.9186 0|0:32:19,0,6,5:19:760:0,6,5:0,161,180:-7.65216,-13.3717,-75.8464,-2.34505,-64.8099,-63.0037,0,-62.5097,-51.4804,-61.0045 0|0:56:31,0,4,19:31:1233:0,4,19:0,48,739:-50.3559,-59.6878,-161.258,-57.647,-159.196,-157.992,0,-101.786,-99.735,-96.0669 dDocent_Contig_6985 19 . T A 184.194 . AB=0.236842;ABP=25.8679;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=38;DPB=38;DPRA=0;EPP=22.5536;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=360;QR=1183;RO=29;RPL=0;RPP=22.5536;RPPR=65.983;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:6,2:6:244:2:80:-5.18333,0,-19.9306 0/1:4:3,1:3:122:1:41:-2.89045,0,-10.1684 0/1:26:20,6:20:817:6:239:-14.0576,0,-66.0158 dDocent_Contig_6986 41 . C G 129.827 . AB=0.272727;ABP=12.8806;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=51;DPB=51;DPRA=0.37931;EPP=16.0391;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=235;QR=1765;RO=45;RPL=0;RPP=16.0391;RPPR=100.727;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:2,4:2:70:4:154:-12.4272,0,-4.8393 0/1:16:14,2:14:560:2:81:-2.86925,0,-45.9244 0/0:29:29,0:29:1135:0:0:0,-8.72987,-102.419 dDocent_Contig_6987 130 . T A 30.4133 . AB=0.227273;ABP=17.2236;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=63;DPB=63;DPRA=3;EPP=22.5536;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=219;QR=1574;RO=53;RPL=0;RPP=22.5536;RPPR=118.098;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=118.098;SRR=53;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:17,5:17:531:5:115:-3.95617,0,-41.4694 0/0:9:8,0:8:182:0:0:0,-2.40824,-16.5166 0/0:32:28,4:28:861:4:104:0,-0.014609,-68.1597 dDocent_Contig_6988 19 . C T 207.494 . AB=0.227273;ABP=31.4368;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=44;DPB=44;DPRA=0;EPP=24.725;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.9;PAIREDR=0.882353;PAO=0;PQA=0;PQR=0;PRO=0;QA=406;QR=1354;RO=34;RPL=0;RPP=24.725;RPPR=76.8404;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:13,5:13:513:5:204:-13.3255,0,-41.0942 0/1:17:14,3:14:559:3:120:-6.07018,0,-45.5353 0/1:9:7,2:7:282:2:82:-5.07041,0,-23.0431 dDocent_Contig_6989 33 . A C 114.969 . AB=0.163265;ABP=51.2702;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=82;DPB=82;DPRA=0.742424;EPP=20.3821;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=311;QR=2817;RO=74;RPL=0;RPP=20.3821;RPPR=163.699;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1236:0:0:0,-9.93399,-111.525 0/1:31:28,3:28:1074:3:115:-1.3928,0,-87.6296 0/1:18:13,5:13:507:5:196:-12.5951,0,-40.5601 dDocent_Contig_6990 59 . A G 363.49 . AB=0.313725;ABP=18.3809;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=51;DPB=51;DPRA=0;EPP=37.7539;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=604;QR=1336;RO=35;RPL=16;RPP=37.7539;RPPR=79.0118;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:11,6:11:429:6:227:-15.6707,0,-33.8444 0/1:11:9,2:9:313:2:69:-3.24056,0,-25.1762 0/1:23:15,8:15:594:8:308:-21.1524,0,-46.876 dDocent_Contig_6992 7 . A G 1931.98 . AB=0.410072;ABP=12.7741;AC=2;AF=0.333333;AN=6;AO=57;CIGAR=1M1X4M2X9M;DP=139;DPB=139;DPRA=0;EPP=126.784;EPPR=68.1545;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1924;QR=1160;RO=30;RPL=0;RPP=126.784;RPPR=68.1545;RPR=57;RUN=1;SAF=57;SAP=126.784;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:53:13,14,23,3:13:500:14,23,3:546,850,109:-69.4399,-28.4649,-65.3054,-3.83595,0,-37.9617,-64.4541,-60.6205,-35.9876,-104.603 1|0:37:2,0,17,17:2:75:0,17,17:0,505,635:-85.6028,-86.2049,-92.3502,-45.9238,-52.0682,-46.9507,-34.1709,-40.3226,0,-35.2051 0|0:49:15,0,17,15:15:585:0,17,15:0,569,565:-41.7987,-46.3141,-94.4117,-0.267935,-48.3615,-43.244,0,-48.1097,-2.06931,-43.5942 dDocent_Contig_6993 15 . C T 5779.96 . AB=0.136877;ABP=2437.94;AC=3;AF=0.5;AN=6;AO=291;CIGAR=1X4M;DP=2126;DPB=2126;DPRA=0;EPP=286.757;EPPR=1287.78;GTI=0;LEN=1;MEANALT=23;MQM=59.2371;MQMR=55.4384;NS=3;NUMALT=4;ODDS=4.44089e-16;PAIRED=0;PAIREDR=0.0250232;PAO=0;PQA=0;PQR=0;PRO=0;QA=11065;QR=41414;RO=1079;RPL=0;RPP=634.909;RPPR=2346.03;RPR=291;RUN=1;SAF=243;SAP=286.757;SAR=48;SRF=939;SRP=1287.78;SRR=140;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:706:370,36,51,69,87:370:14093:36,51,69,87:1387,1878,2600,3310:-159.644,-158.389,-1272.99,-118.15,-1130.95,-1228.24,-66.0104,-1078.81,-1038.57,-1170.68,0,-1012.8,-972.564,-920.424,-1099.25 0|1:842:450,56,45,76,126:450:17232:56,45,76,126:2055,1595,2890,4737:-251.989,-225.336,-1594.55,-258.975,-1482.93,-1631.5,-163.49,-1387.44,-1421.08,-1526.68,0,-1223.96,-1257.6,-1162.11,-1348.14 0|1:578:259,26,42,90,78:259:10089:26,42,90,78:981,1546,3430,3018:-170.006,-168.213,-963.63,-122.217,-845.702,-912.818,0,-723.48,-677.485,-776.146,-0.254248,-723.742,-677.747,-555.525,-780.021 dDocent_Contig_6994 7 . A T 1068.96 . AB=0.1875;ABP=30.1537;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=2X3M1X3M1X4M;DP=117;DPB=117;DPRA=0;EPP=16.0391;EPPR=26.8965;GTI=0;LEN=1;MEANALT=7;MQM=60;MQMR=60;NS=3;NUMALT=8;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=230;QR=433;RO=11;RPL=0;RPP=16.0391;RPPR=26.8965;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=11;SRP=26.8965;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:32:5,9,1,4,2,2,3,0,6:5:197:9,1,4,2,2,3,0,6:244,36,150,77,60,114,0,230:-17.9397,-2.66674,-16.173,-16.7763,-16.2158,-32.6951,-8.2279,-7.67421,-21.7816,-23.2456,-13.1171,-12.558,-26.6699,-18.123,-28.7361,-15.1922,-14.6349,-28.7438,-20.1978,-25.0857,-30.8097,-10.3027,-9.74586,-23.8562,-15.3091,-20.1977,-22.2721,-25.6214,-19.4448,-18.8823,-32.9961,-24.4497,-29.3381,-31.4117,-26.5245,-35.6642,-0.550414,0,-14.1075,-5.55882,-10.4481,-12.5236,-7.63361,-16.776,-14.9698 0|0:43:0,11,1,10,6,5,0,3,0:0:0:11,1,10,6,5,0,3,0:302,36,363,230,166,0,24,0:-49.6476,-28.7681,-25.4568,-46.9785,-26.0991,-46.6774,-20.8828,0,-18.2128,-17.8725,-30.7634,-9.88076,-28.0937,-1.98849,-28.9573,-36.8278,-15.9493,-34.1584,-8.05798,-17.9404,-35.3226,-49.6476,-28.7681,-46.9785,-20.8828,-30.7634,-36.8278,-49.6476,-49.1242,-28.2528,-46.4554,-20.3632,-30.2417,-36.3065,-49.1242,-48.2211,-49.6476,-28.7681,-46.9785,-20.8828,-30.7634,-36.8278,-49.6476,-49.1242,-49.6476 0|0:42:6,24,3,0,5,0,3,0,0:6:236:24,3,0,5,0,3,0,0:651,108,0,194,0,109,0,0:-42.9851,0,-12.1979,-36.7827,-11.4273,-55.3107,-44.7913,-19.4226,-56.2138,-64.2205,-28.8348,-3.47808,-40.2608,-48.2689,-46.7637,-44.7913,-19.4226,-56.2138,-64.2205,-48.2689,-64.2205,-36.0466,-10.6882,-47.4708,-55.4781,-39.5247,-55.4781,-54.575,-44.7913,-19.4226,-56.2138,-64.2205,-48.2689,-64.2205,-55.4781,-64.2205,-44.7913,-19.4226,-56.2138,-64.2205,-48.2689,-64.2205,-55.4781,-64.2205,-64.2205 dDocent_Contig_6995 25 . T C 637.077 . AB=0.583333;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=21;CIGAR=1X1M1X;DP=104;DPB=104;DPRA=1.05882;EPP=48.6112;EPPR=178.9;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=834;QR=3215;RO=81;RPL=0;RPP=48.6112;RPPR=178.9;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:36:14,21:14:552:21:834:-64.6286,0,-39.2733 0|0:42:42,0:42:1666:0:0:0,-12.6433,-150.177 0|0:26:25,0:25:997:0:0:0,-7.52575,-89.8334 dDocent_Contig_6996 8 . A C 4062.38 . AB=0.0451613;ABP=281.533;AC=0;AF=0;AN=6;AO=7;CIGAR=1X3M1X;DP=204;DPB=204.4;DPRA=0;EPP=18.2106;EPPR=104.246;GTI=0;LEN=1;MEANALT=2.5;MQM=59.8571;MQMR=44.431;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.689655;PAO=0;PQA=0;PQR=0;PRO=0;QA=266;QR=2150;RO=58;RPL=0;RPP=18.2106;RPPR=128.956;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=55;SRP=104.246;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:70:18,6,45:18:645:6,45:227,1736:-134.71,-121.519,-165.348,0,-26.9841,-32.0608 0|0:49:21,0,27:21:793:0,27:0,1073:-77.7302,-84.0519,-122.159,0,-38.0216,-29.8938 0|0:85:19,1,65:19:712:1,65:39,2526:-197.515,-200.028,-252.187,0,-49.2142,-32.8556 dDocent_Contig_6997 107 . N G 320.042 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=26.8965;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=48.5455;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0.272727;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=371;QR=0;RO=0;RPL=0;RPP=26.8965;RPPR=0;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:164:-12.7346,-1.50515,0 1/1:6:0,6:0:0:6:207:-18.9682,-1.80618,0 ./.:.:.:.:.:.:.:. dDocent_Contig_6998 44 . C A 42.9029 . AB=0.176471;ABP=18.4661;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=28;DPB=28;DPRA=3.09091;EPP=9.52472;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=976;RO=25;RPL=0;RPP=9.52472;RPPR=57.2971;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4,0:4:159:0:0:0,-1.20412,-14.6908 0/0:7:7,0:7:281:0:0:0,-2.10721,-25.6622 0/1:17:14,3:14:536:3:114:-5.51171,0,-43.4578 dDocent_Contig_6999 55 . A C 681.6 . AB=0.5;ABP=3.0103;AC=3;AF=0.5;AN=6;AO=25;CIGAR=2X;DP=50;DPB=50;DPRA=0;EPP=57.2971;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=954;QR=948;RO=25;RPL=25;RPP=57.2971;RPPR=57.2971;RPR=0;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:11:8,3:8:301:3:113:-7.22708,0,-24.1339 0|1:18:6,12:6:224:12:452:-35.6044,0,-15.0955 0|1:21:11,10:11:423:10:389:-29.0452,0,-32.0946 dDocent_Contig_7000 96 . C G 982.517 . AB=0.425743;ABP=7.84774;AC=3;AF=0.5;AN=6;AO=43;CIGAR=1X;DP=101;DPB=101;DPRA=0;EPP=96.3836;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1460;QR=1975;RO=58;RPL=43;RPP=96.3836;RPPR=128.956;RPR=0;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:11,16:11:371:16:543:-41.0651,0,-25.5884 0/1:36:22,14:22:744:14:470:-31.7829,0,-56.4384 0/1:38:25,13:25:860:13:447:-29.1204,0,-66.2767 dDocent_Contig_7002 209 . N G 77.84 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_7003 55 . G A 3168.08 . AB=0.0769231;ABP=43.4331;AC=0;AF=0;AN=6;AO=2;CIGAR=2X;DP=147;DPB=147;DPRA=0;EPP=7.35324;EPPR=89.8692;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=1552;RO=40;RPL=2;RPP=7.35324;RPPR=89.8692;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:49:20,0,29:20:764:0,29:0,1106:-85.0662,-91.0868,-153.763,0,-63.0578,-54.3279 0|0:72:13,0,59:13:515:0,59:0,2280:-183.709,-187.623,-230.014,0,-42.7853,-25.0245 0|0:26:7,2,17:7:273:2,17:80,656:-51.7492,-47.265,-69.1005,0,-15.8365,-17.3111 dDocent_Contig_7004 16 . A T 307.824 . AB=0.131687;ABP=289.332;AC=1;AF=0.166667;AN=6;AO=57;CIGAR=2X;DP=582;DPB=582;DPRA=0;EPP=102.098;EPPR=701.395;GTI=0;LEN=1;MEANALT=5;MQM=39.7719;MQMR=55.6929;NS=3;NUMALT=2;ODDS=0;PAIRED=0.824561;PAIREDR=0.80404;PAO=0;PQA=0;PQR=0;PRO=0;QA=2228;QR=19258;RO=495;RPL=0;RPP=126.784;RPPR=1077.89;RPR=57;RUN=1;SAF=54;SAP=102.098;SAR=3;SRF=447;SRP=701.395;SRR=48;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:181:152,5,16:152:5921:5,16:195,609:0,-29.7746,-495.956,-11.6019,-463.263,-474.414 0|0:158:136,8,9:136:5268:8,9:314,352:0,-17.611,-432.563,-18.3912,-412.404,-433.016 0|1:243:207,1,32:207:8069:1,32:39,1267:-32.0043,-91.5379,-708.538,0,-614.494,-607.641 dDocent_Contig_7005 35 . A G 4460.95 . AB=0.734513;ABP=56.9896;AC=4;AF=0.666667;AN=6;AO=136;CIGAR=1X4M;DP=175;DPB=175;DPRA=0;EPP=298.331;EPPR=46.4397;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0.595588;PAIREDR=0.7;PAO=0;PQA=0;PQR=0;PRO=0;QA=5404;QR=779;RO=20;RPL=0;RPP=298.331;RPPR=46.4397;RPR=136;RUN=1;SAF=136;SAP=298.331;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:44:9,0,0,3,31:9:350:0,0,3,31:0,0,121,1213:-97.0543,-99.7636,-128.525,-99.7636,-128.525,-128.525,-89.7877,-118.549,-118.549,-117.646,0,-28.7927,-28.7927,-18.8098,-19.4607 0|1:69:9,4,4,0,52:9:349:4,4,0,52:150,157,0,2074:-168.197,-158.621,-186.089,-166.467,-182.853,-193.934,-170.906,-187.294,-195.138,-199.579,0,-16.4366,-24.3345,-28.7364,-13.0829 1|1:62:2,0,4,0,53:2:80:0,4,0,53:0,160,0,2117:-183.162,-183.764,-190.355,-174.992,-181.582,-180.378,-183.764,-190.355,-181.582,-190.355,-9.34985,-15.9546,-7.23118,-15.9546,0 dDocent_Contig_7006 7 . A T 68.8663 . AB=0.333333;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=30;DPB=30;DPRA=0.857143;EPP=9.52472;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=52.2222;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.814815;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=1025;RO=27;RPL=0;RPP=9.52472;RPPR=61.6401;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:263:0:0:0,-2.10721,-19.0003 0/0:14:14,0:14:533:0:0:0,-4.21442,-45.9552 0/1:9:6,3:6:229:3:116:-8.10843,0,-15.4272 dDocent_Contig_7007 10 . T C 677.479 . AB=0.175926;ABP=200.051;AC=3;AF=0.5;AN=6;AO=38;CIGAR=1X;DP=216;DPB=216;DPRA=0;EPP=85.5263;EPPR=355.57;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.6292;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.786517;PAO=0;PQA=0;PQR=0;PRO=0;QA=1505;QR=6635;RO=178;RPL=0;RPP=85.5263;RPPR=389.532;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=174;SRP=355.57;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:99:76,23:76:2809:23:918:-53.1267,0,-223.196 0/1:54:47,7:47:1758:7:270:-8.40786,0,-139.762 0/1:63:55,8:55:2068:8:317:-9.93009,0,-167.384 dDocent_Contig_7008 7 . A G 229.723 . AB=0.282051;ABP=19.1015;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X1M1X;DP=53;DPB=53;DPRA=0;EPP=26.8965;EPPR=79.0118;GTI=0;LEN=1;MEANALT=2;MQM=50.1818;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=400;QR=1329;RO=35;RPL=0;RPP=26.8965;RPPR=79.0118;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:20:13,4,3:13:492:4,3:150,111:-7.65835,0,-39.1451,-2.75896,-31.542,-42.2079 0|1:19:10,7,2:10:378:7,2:250,77:-16.3144,0,-28.8994,-13.5835,-25.2723,-43.9888 0|0:14:12,0,2:12:459:0,2:0,74:-2.709,-6.32136,-43.9998,0,-38.0454,-37.4433 dDocent_Contig_7009 52 . G A 1183.02 . AB=0.223077;ABP=89.6019;AC=4;AF=0.666667;AN=6;AO=29;CIGAR=4M2X3M;DP=130;DPB=131.667;DPRA=0;EPP=65.983;EPPR=146.327;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1098;QR=2568;RO=66;RPL=29;RPP=65.983;RPPR=146.327;RPR=0;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:36:5,13,0,18:5:192:13,0,18:462,0,670:-75.183,-39.0611,-50.911,-76.6882,-54.8244,-92.4516,-21.8448,0,-37.6135,-32.195 0|1:35:16,2,10,7:16:605:2,10,7:77,401,277:-28.2271,-26.7227,-75.7006,0,-43.2578,-46.57,-10.2478,-53.5041,-26.7789,-57.7192 0|1:59:45,0,10,4:45:1771:0,10,4:0,391,151:-18.6085,-32.1549,-177.846,0,-145.701,-142.691,-19.7847,-165.473,-133.328,-164.269 dDocent_Contig_7010 169 . C T 197.416 . AB=0.470588;ABP=3.13803;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=24;DPB=24;DPRA=1.21429;EPP=20.3821;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=294;QR=607;RO=16;RPL=8;RPP=20.3821;RPPR=37.7539;RPR=0;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:6,4:6:232:4:151:-10.9474,0,-18.2386 0/1:7:3,4:3:114:4:143:-11.113,0,-8.52477 0/0:7:7,0:7:261:0:0:0,-2.10721,-23.8438 dDocent_Contig_7012 197 . C T 260.038 . AB=0.282051;ABP=19.1015;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=60;DPB=60;DPRA=3.71429;EPP=26.8965;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=429;QR=1883;RO=49;RPL=11;RPP=26.8965;RPPR=109.412;RPR=0;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=109.412;SRR=49;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:193:0:0:0,-1.50515,-17.7415 0/0:16:16,0:16:605:0:0:0,-4.81648,-54.7844 0/1:39:28,11:28:1085:11:429:-27.2255,0,-86.2146 dDocent_Contig_7013 16 . G A 406.398 . AB=0.333333;ABP=14.5915;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X;DP=88;DPB=88;DPRA=2.4;EPP=37.7539;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=622;QR=2866;RO=72;RPL=0;RPP=37.7539;RPPR=159.356;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:876:0:0:0,-6.62266,-79.1517 0/1:48:32,16:32:1288:16:622:-41.8616,0,-101.736 0/0:18:18,0:18:702:0:0:0,-5.41854,-63.4972 dDocent_Contig_7015 10 . T C 354.633 . AB=0.0509804;ABP=449.576;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X3M;DP=255;DPB=255;DPRA=0;EPP=31.2394;EPPR=428.995;GTI=0;LEN=1;MEANALT=2.33333;MQM=48.6923;MQMR=35.9375;NS=3;NUMALT=2;ODDS=0;PAIRED=0.923077;PAIREDR=0.350962;PAO=0;PQA=0;PQR=0;PRO=0;QA=495;QR=7875;RO=208;RPL=0;RPP=31.2394;RPPR=454.677;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=205;SRP=428.995;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:112:90,15,7:90:3397:15,7:601,282:-19.0091,0,-231.763,-23.2865,-213.465,-257.48 0|1:55:44,10,1:44:1680:10,1:393,10:-18.5587,0,-84.0861,-31.2312,-86.5012,-117.77 0|1:88:74,8,5:74:2798:8,5:313,203:-1.51342,0,-110.841,-7.51781,-96.9767,-119.291 dDocent_Contig_7016 12 . T C 117.002 . AB=0.205882;ABP=28.557;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X1M1X;DP=34;DPB=34;DPRA=0;EPP=18.2106;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1.33333;MQM=49.4286;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=266;QR=977;RO=26;RPL=0;RPP=18.2106;RPPR=59.4686;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:9:6,3:6:226:3:113:-7.57789,0,-17.9904 0|1:13:9,3:9:329:3:113:-6.43248,0,-25.9534 0|1:12:11,1:11:422:1:40:-0.175214,0,-34.7186 dDocent_Contig_7017 25 . G A 133.353 . AB=0.384615;ABP=4.51363;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=33;DPB=33;DPRA=1.3;EPP=13.8677;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=1111;RO=28;RPL=0;RPP=13.8677;RPPR=63.8115;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:361:0:0:0,-2.70927,-32.8535 0/1:13:8,5:8:313:5:201:-14.5571,0,-24.6201 0/0:11:11,0:11:437:0:0:0,-3.31133,-39.6839 dDocent_Contig_7018 16 . C T 45.4403 . AB=0.151515;ABP=37.8197;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=44;DPB=44;DPRA=1.5;EPP=13.8677;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=174;QR=1515;RO=39;RPL=0;RPP=13.8677;RPPR=87.6977;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:4,2:4:135:2:76:-5.40849,0,-10.6707 0/1:27:24,3:24:940:3:98:-1.01656,0,-76.7741 0/0:11:11,0:11:440:0:0:0,-3.31133,-39.9551 dDocent_Contig_7019 50 . C A 185.11 . AB=0.192308;ABP=45.7716;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=84;DPB=84;DPRA=0.8125;EPP=24.725;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=396;QR=2961;RO=74;RPL=10;RPP=24.725;RPPR=163.699;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:25,8:25:1011:8:320:-19.2321,0,-81.3509 0/0:32:32,0:32:1284:0:0:0,-9.63296,-115.83 0/1:19:17,2:17:666:2:76:-1.4951,0,-54.5504 dDocent_Contig_7021 111 . G A 159.04 . AB=0.315789;ABP=8.61041;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X1M1X;DP=31;DPB=31;DPRA=0;EPP=16.0391;EPPR=42.0968;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=210;QR=625;RO=18;RPL=0;RPP=16.0391;RPPR=42.0968;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:9:7,0,0,2:7:243:0,0,2:0,0,62:-2.6091,-4.71631,-24.5232,-4.71631,-24.5232,-24.5232,0,-20.1017,-20.1017,-19.4996 0|0:3:2,0,0,1:2:69:0,0,1:0,0,35:-2.59554,-3.1976,-8.8,-3.1976,-8.8,-8.8,0,-5.9506,-5.9506,-5.64957 0|1:19:9,6,2,2:9:313:6,2,2:210,70,62:-14.3981,0,-23.6666,-11.4084,-19.7751,-36.2645,-12.685,-21.0468,-32.4383,-37.5318 dDocent_Contig_7022 24 . C T 116.655 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=30;DPB=30;DPRA=0.222222;EPP=9.52472;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=1068;RO=27;RPL=0;RPP=9.52472;RPPR=61.6401;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:120:-11.1877,-0.90309,0 0/0:15:15,0:15:593:0:0:0,-4.51545,-53.7037 0/0:12:12,0:12:475:0:0:0,-3.61236,-43.0993 dDocent_Contig_7023 126 . A C 180.017 . AB=0.407407;ABP=5.02092;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=110;DPB=110;DPRA=0.162651;EPP=26.8965;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=310;QR=2957;RO=98;RPL=0;RPP=26.8965;RPPR=215.815;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=215.815;SRR=98;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:83:82,0:82:2427:0:0:0,-24.6845,-218.589 0/1:24:15,9:15:497:9:260:-16.4595,0,-37.8237 0/1:3:1,2:1:33:2:50:-3.84607,0,-2.39604 dDocent_Contig_7024 10 . G A 286.822 . AB=0.233333;ABP=40.0701;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=60;DPB=60;DPRA=0;EPP=33.4109;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=548;QR=1822;RO=46;RPL=0;RPP=33.4109;RPPR=102.898;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:15,2:15:601:2:81:-2.56822,0,-49.311 0/1:24:17,7:17:660:7:274:-17.8022,0,-52.5061 0/1:19:14,5:14:561:5:193:-12.0188,0,-45.1105 dDocent_Contig_7026 11 . G A 2724.46 . AB=0.676692;ABP=39.0763;AC=3;AF=0.5;AN=6;AO=90;CIGAR=1X;DP=133;DPB=133;DPRA=0;EPP=198.443;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.988889;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3504;QR=1614;RO=43;RPL=0;RPP=198.443;RPPR=96.3836;RPR=90;RUN=1;SAF=90;SAP=198.443;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:12,26:12:430:26:1022:-80.8399,0,-27.587 0/1:34:10,24:10:370:24:950:-75.5681,0,-23.401 0/1:61:21,40:21:814:40:1532:-119.755,0,-55.2105 dDocent_Contig_7027 13 . A T 1135.9 . AB=0.537313;ABP=3.82055;AC=4;AF=0.666667;AN=6;AO=36;CIGAR=1X3M;DP=67;DPB=67;DPRA=0;EPP=81.1833;EPPR=44.2683;GTI=0;LEN=1;MEANALT=2;MQM=58.7778;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.944444;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1410;QR=739;RO=19;RPL=0;RPP=81.1833;RPPR=44.2683;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:11:4,2,5:4:159:2,5:74,200:-15.292,-10.4516,-22.9393,0,-7.0652,-11.604 0|1:33:9,2,22:9:350:2,22:76,861:-68.0215,-64.4992,-92.6574,0,-22.5372,-22.1454 1|1:23:6,8,9:6:230:8,9:319,349:-33.9929,-9.52257,-25.9897,-7.40935,0,-23.5693 dDocent_Contig_7028 12 . A G 145.522 . AB=0.204545;ABP=36.372;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=44;DPB=44;DPRA=0;EPP=22.5536;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=337;QR=1342;RO=35;RPL=0;RPP=22.5536;RPPR=79.0118;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:11,4:11:402:4:160:-10.268,0,-31.9999 0/1:21:17,4:17:659:4:136:-6.24578,0,-53.3171 0/1:8:7,1:7:281:1:41:-1.68633,0,-23.2539 dDocent_Contig_7029 54 . A C 429.977 . AB=0.5;ABP=3.0103;AC=4;AF=0.666667;AN=6;AO=15;CIGAR=1X;DP=28;DPB=28;DPRA=0;EPP=35.5824;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=578;QR=496;RO=13;RPL=15;RPP=35.5824;RPPR=31.2394;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:80:-7.59179,-0.60206,0 0/1:10:8,2:8:299:2:77:-4.29884,0,-24.2534 0/1:16:5,11:5:197:11:421:-33.4242,0,-13.2899 dDocent_Contig_7030 42 . C A 309.627 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=41;DPB=41;DPRA=2.31579;EPP=26.8965;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.1;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.818182;PAIREDR=0.8;PAO=0;PQA=0;PQR=0;PRO=0;QA=424;QR=1194;RO=30;RPL=0;RPP=26.8965;RPPR=68.1545;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:11,11:11:431:11:424:-31.8835,0,-32.5165 0/0:9:9,0:9:357:0:0:0,-2.70927,-31.7106 0/0:10:10,0:10:406:0:0:0,-3.0103,-36.9 dDocent_Contig_7031 8 . A G 405.826 . AB=0.24;ABP=47.0478;AC=2;AF=0.333334;AN=6;AO=18;CIGAR=1M1X;DP=80;DPB=80;DPRA=7.5;EPP=42.0968;EPPR=76.8404;GTI=0;LEN=1;MEANALT=3.5;MQM=50;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.777778;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=667;QR=1272;RO=34;RPL=0;RPP=42.0968;RPPR=76.8404;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:5:5,0,0,0:5:192:0,0,0:0,0,0:0,-1.50515,-17.6501,-1.50515,-17.6501,-17.6501,-1.50515,-17.6501,-17.6501,-17.6501 0|1:30:13,7,6,4:13:480:7,6,4:230,206,151:-14.0203,0,-37.1803,-4.57086,-25.9275,-42.0402,-5.53981,-26.9053,-31.4661,-43.6293 0|1:45:16,6,12,9:16:600:6,12,9:218,461,329:-28.8805,-15.8939,-63.2389,0,-31.3475,-45.5353,-6.81314,-38.1642,-22.2691,-53.2565 dDocent_Contig_7032 146 . A G 35.0216 . AB=0.25;ABP=7.35324;AC=1;AF=0.25;AN=4;AO=2;CIGAR=1X;DP=19;DPB=19;DPRA=0.727273;EPP=7.35324;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=655;RO=17;RPL=0;RPP=7.35324;RPPR=39.9253;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=39.9253;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:427:0:0:0,-3.31133,-38.7787 0/1:8:6,2:6:228:2:77:-4.89996,0,-18.4731 ./.:.:.:.:.:.:.:. dDocent_Contig_7035 98 . N G 26813.2 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=926;CIGAR=1X;DP=933;DPB=933;DPRA=0;EPP=2013.79;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0.99892;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=29792;QR=0;RO=0;RPL=926;RPP=2013.79;RPPR=0;RPR=0;RUN=1;SAF=926;SAP=2013.79;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:932:0,925:0:0:925:29758:-2677.61,-278.453,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 dDocent_Contig_7036 54 . C T 38.4864 . AB=0.222222;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=32;DPB=32;DPRA=0.782609;EPP=7.35324;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.9;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=1144;RO=30;RPL=2;RPP=7.35324;RPPR=44.7026;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=27;SRP=44.7026;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:595:0:0:0,-4.51545,-53.8903 0/0:8:8,0:8:312:0:0:0,-2.40824,-28.4425 0/1:9:7,2:7:237:2:82:-5.07041,0,-18.9414 dDocent_Contig_7037 155 . C T 49.4157 . AB=0.176471;ABP=18.4661;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=34;DPB=34;DPRA=2;EPP=9.52472;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1222;RO=31;RPL=0;RPP=9.52472;RPPR=70.3259;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:551:0:0:0,-4.21442,-49.9317 0/0:3:3,0:3:120:0:0:0,-0.90309,-11.1877 0/1:17:14,3:14:551:3:121:-6.16269,0,-44.807 dDocent_Contig_7038 38 . G C 184.198 . AB=0.333333;ABP=8.07707;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=53;DPB=53;DPRA=1.3125;EPP=18.2106;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=281;QR=1832;RO=46;RPL=0;RPP=18.2106;RPPR=102.898;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:14,7:14:556:7:281:-19.3405,0,-44.0606 0/0:26:26,0:26:1035:0:0:0,-7.82678,-93.4459 0/0:6:6,0:6:241:0:0:0,-1.80618,-22.0663 dDocent_Contig_7039 29 . T A 74.4137 . AB=0.333333;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=46;DPB=46;DPRA=0.486486;EPP=9.52472;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1701;RO=43;RPL=0;RPP=9.52472;RPPR=96.3836;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:665:0:0:0,-5.11751,-60.1732 0/1:9:6,3:6:244:3:122:-8.66322,0,-19.6296 0/0:20:20,0:20:792:0:0:0,-6.0206,-71.5933 dDocent_Contig_7040 9 . G C 56.9767 . AB=0.1;ABP=197.574;AC=1;AF=0.166667;AN=6;AO=27;CIGAR=1X;DP=496;DPB=496;DPRA=1.12092;EPP=61.6401;EPPR=950.248;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=52.5921;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.660088;PAO=0;PQA=0;PQR=0;PRO=0;QA=1038;QR=17206;RO=456;RPL=0;RPP=61.6401;RPPR=993.202;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=451;SRP=950.248;SRR=5;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:203:180,13:180:6714:13:499:0,-13.2231,-520.566 0/1:140:124,14:124:4711:14:539:-6.91952,0,-353.242 0/0:153:152,0:152:5781:0:0:0,-45.7566,-488.363 dDocent_Contig_7041 9 . G A 134.256 . AB=0.1;ABP=30.8051;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X3M1X1M2X3M2X1M1X;DP=54;DPB=54;DPRA=3.33333;EPP=7.35324;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=47;MQMR=60;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.953488;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=1648;RO=43;RPL=0;RPP=7.35324;RPPR=96.3836;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:20:18,2,0:18:704:2,0:80,0:-1.4293,0,-57.6717,-6.84784,-58.2737,-64.7296 0|0:28:19,0,6:19:725:0,6:0,241:-14.1976,-19.9172,-79.3995,0,-59.5342,-57.728 0|0:6:6,0,0:6:219:0,0:0,0:0,-1.80618,-20.056,-1.80618,-20.056,-20.056 dDocent_Contig_7042 10 . G A 57.3045 . AB=0.147059;ABP=39.7976;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=115;DPB=115;DPRA=1.35484;EPP=18.2106;EPPR=237.529;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.7778;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.944444;PAO=0;PQA=0;PQR=0;PRO=0;QA=269;QR=4258;RO=108;RPL=0;RPP=18.2106;RPPR=237.529;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1220:0:0:0,-9.33193,-109.98 0/0:50:48,2:48:1875:2:82:0,-7.27182,-161.18 0/1:34:29,5:29:1163:5:187:-6.9523,0,-94.7153 dDocent_Contig_7044 4 . T C 960.617 . AB=0.5625;ABP=3.55317;AC=5;AF=0.833333;AN=6;AO=35;CIGAR=1X2M1X;DP=42;DPB=54.5;DPRA=0;EPP=79.0118;EPPR=0;GTI=0;LEN=1;MEANALT=1.66667;MQM=34.1429;MQMR=0;NS=3;NUMALT=3;ODDS=6.93889e-18;PAIRED=0;PAIREDR=0;PAO=25;PQA=805.5;PQR=0;PRO=0;QA=1098;QR=0;RO=0;RPL=0;RPP=79.0118;RPPR=0;RPR=35;RUN=1;SAF=0;SAP=79.0118;SAR=35;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:18:0,0,18,0:0:0:0,18,0:0,550,0:-42.4138,-42.4138,-42.4138,-5.41854,-5.41854,0,-42.4138,-42.4138,-5.41854,-42.4138 1|1:8:0,0,8,0:0:0:0,8,0:0,248,0:-19.7212,-19.7212,-19.7212,-2.40824,-2.40824,0,-19.7212,-19.7212,-2.40824,-19.7212 1|0:16:0,2,9,5:0:0:2,9,5:68,300,167:-34.8474,-29.5116,-28.9096,-13.0078,-7.72321,-10.2985,-21.4986,-16.1716,0,-19.9934 dDocent_Contig_7045 13 . C T 135.006 . AB=0.24;ABP=17.6895;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=101;DPB=101;DPRA=0;EPP=22.5536;EPPR=202.786;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=366;QR=3673;RO=92;RPL=0;RPP=22.5536;RPPR=202.786;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:31,1:31:1234:1:41:0,-5.53839,-107.236 0/1:25:19,6:19:753:6:243:-14.7224,0,-60.5657 0/0:44:42,2:42:1686:2:82:0,-5.46564,-144.183 dDocent_Contig_7046 96 . C T 170.457 . AB=0.264706;ABP=19.3602;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=42;DPB=42;DPRA=2.125;EPP=22.5536;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=321;QR=1112;RO=33;RPL=9;RPP=22.5536;RPPR=74.6689;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:13,7:13:445:7:250:-16.8262,0,-34.3577 0/1:14:12,2:12:416:2:71:-2.52764,0,-33.5583 0/0:8:8,0:8:251:0:0:0,-2.40824,-22.8952 dDocent_Contig_7047 23 . A G 90.5321 . AB=0.235294;ABP=13.3567;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=46;DPB=46;DPRA=0.293103;EPP=11.6962;EPPR=55.9529;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.714286;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=1612;RO=42;RPL=0;RPP=11.6962;RPPR=94.2121;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=37;SRP=55.9529;SRR=5;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:29,0:29:1095:0:0:0,-8.72987,-98.84 0/1:13:12,1:12:477:1:41:-0.181177,0,-39.3671 0/1:4:1,3:1:40:3:123:-10.2607,0,-2.79156 dDocent_Contig_7049 11 . T C 4753.56 . AB=0.464072;ABP=6.75511;AC=3;AF=0.5;AN=6;AO=155;CIGAR=1X4M;DP=334;DPB=334;DPRA=0;EPP=339.589;EPPR=224.5;GTI=0;LEN=1;MEANALT=6.33333;MQM=59.8065;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0.921569;PAO=0;PQA=0;PQR=0;PRO=0;QA=6190;QR=3996;RO=102;RPL=0;RPP=339.589;RPPR=224.5;RPR=155;RUN=1;SAF=155;SAP=339.589;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:157:63,6,7,15,57:63:2475:6,7,15,57:241,215,577,2278:-168.663,-167.767,-369.532,-172.022,-355.729,-373.482,-140.277,-323.987,-328.239,-339.332,0,-183.728,-187.982,-156.236,-186.43 0|1:78:21,7,2,3,37:21:813:7,2,3,37:278,80,116,1477:-115.326,-98.7611,-163.43,-115.073,-158.962,-181.247,-112.12,-156.009,-172.321,-177.993,0,-43.8885,-60.2016,-57.249,-55.639 0|1:99:18,1,18,0,61:18:708:1,18,0,61:41,702,0,2435:-195.078,-197.113,-255.05,-143.705,-198.558,-196.524,-200.497,-255.351,-201.942,-258.735,0,-54.857,-1.45121,-58.2416,-39.8787 dDocent_Contig_7050 50 . T A 493.509 . AB=0.31746;ABP=21.2438;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=1X;DP=75;DPB=75;DPRA=2.625;EPP=46.4397;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=777;QR=2189;RO=55;RPL=20;RPP=46.4397;RPPR=122.441;RPR=0;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:25,10:25:982:10:377:-23.739,0,-78.1433 0/1:28:18,10:18:730:10:400:-27.9306,0,-57.5954 0/0:12:12,0:12:477:0:0:0,-3.61236,-43.2778 dDocent_Contig_7051 16 . G A 37.3694 . AB=0.190476;ABP=20.4855;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=48;DPB=48;DPRA=1.55556;EPP=5.18177;EPPR=81.9729;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.25;PAIREDR=0.272727;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1723;RO=44;RPL=0;RPP=11.6962;RPPR=98.5551;RPR=4;RUN=1;SAF=1;SAP=5.18177;SAR=3;SRF=42;SRP=81.9729;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:592:0:0:0,-4.51545,-53.6117 0/0:12:12,0:12:477:0:0:0,-3.61236,-43.2814 0/1:21:17,4:17:654:4:122:-4.95871,0,-52.8631 dDocent_Contig_7053 73 . G A 645.436 . AB=0.446429;ABP=4.40625;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=56;DPB=56;DPRA=0;EPP=57.2971;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=934;QR=1105;RO=31;RPL=25;RPP=57.2971;RPPR=70.3259;RPR=0;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:8,7:8:312:7:266:-19.786,0,-23.9282 0/1:21:13,8:13:449:8:289:-20.0322,0,-34.409 0/1:20:10,10:10:344:10:379:-28.442,0,-25.267 dDocent_Contig_7054 7 . A T 386.891 . AB=0.141304;ABP=105.825;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=3X2M1X3M;DP=92;DPB=92;DPRA=0;EPP=31.2394;EPPR=115.927;GTI=0;LEN=1;MEANALT=3.33333;MQM=51.4615;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=0.865385;PAO=0;PQA=0;PQR=0;PRO=0;QA=509;QR=2023;RO=52;RPL=0;RPP=31.2394;RPPR=115.927;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:49:28,6,5,4,5:28:1083:6,5,4,5:233,196,160,194:-8.19559,0,-87.155,-1.38409,-73.7238,-88.8475,-3.44037,-75.783,-77.1741,-91.2083,-0.783684,-73.1258,-74.5167,-76.5762,-88.2497 0|1:23:13,0,3,0,7:13:505:0,3,0,7:0,114,0,276:-18.6758,-22.5892,-64.0883,-13.8962,-55.389,-54.4859,-22.5892,-64.0883,-55.389,-64.0883,0,-41.5213,-32.8237,-41.5213,-39.4141 0|0:20:11,1,7,0,1:11:435:1,7,0,1:40,248,0,39:-15.5056,-16.0082,-51.5391,0,-33.0197,-33.7168,-18.8169,-51.8402,-35.824,-54.6469,-15.6259,-48.6542,-32.6392,-51.4609,-51.1599 dDocent_Contig_7057 26 . T A 159.706 . AB=0.538462;ABP=3.17734;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X1M1X3M1D1X;DP=25;DPB=24.125;DPRA=2.16667;EPP=18.2106;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=36;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=253;QR=708;RO=18;RPL=0;RPP=18.2106;RPPR=42.0968;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:5:5,0:5:194:0:0:0,-1.50515,-17.832 0|0:7:7,0:7:274:0:0:0,-2.10721,-25.0271 0|1:13:6,7:6:240:7:253:-17.1923,0,-18.0628 dDocent_Contig_7058 120 . A G 88.4441 . AB=0.214286;ABP=22.8638;AC=3;AF=0.5;AN=6;AO=6;CIGAR=1X;DP=28;DPB=28;DPRA=0;EPP=16.0391;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=220;QR=760;RO=22;RPL=0;RPP=16.0391;RPPR=50.7827;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:6,1:6:215:1:39:-1.78935,0,-17.592 0/1:16:12,4:12:402:4:142:-8.31245,0,-31.6841 0/1:5:4,1:4:143:1:39:-2.39141,0,-11.7163 dDocent_Contig_7060 9 . G A 250.062 . AB=0.4;ABP=5.18177;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=28;DPB=28;DPRA=4.16667;EPP=24.725;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.944444;PAO=0;PQA=0;PQR=0;PRO=0;QA=379;QR=686;RO=18;RPL=0;RPP=24.725;RPPR=42.0968;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:270:2:78:-4.6942,0,-21.9564 0/1:16:8,8:8:301:8:301:-22.63,0,-22.6303 0/0:3:3,0:3:115:0:0:0,-0.90309,-10.7249 dDocent_Contig_7061 75 . A T 34.9089 . AB=0.25;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=19;DPB=19;DPRA=1.45455;EPP=7.35324;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=623;RO=17;RPL=2;RPP=7.35324;RPPR=39.9253;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:287:0:0:0,-2.40824,-26.1738 0/1:8:6,2:6:225:2:75:-4.71186,0,-18.2026 0/0:3:3,0:3:111:0:0:0,-0.90309,-10.3536 dDocent_Contig_7062 9 . G T 174.09 . AB=0.666667;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=38;DPB=38;DPRA=0.62069;EPP=16.0391;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=233;QR=1236;RO=32;RPL=0;RPP=16.0391;RPPR=72.4974;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:465:0:0:0,-3.61236,-42.2018 0/1:9:3,6:3:117:6:233:-18.6308,0,-8.20111 0/0:17:17,0:17:654:0:0:0,-5.11751,-59.1967 dDocent_Contig_7063 14 . A G 249.659 . AB=0.615385;ABP=4.51363;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=57;DPB=57;DPRA=0.590909;EPP=20.3821;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=327;QR=1970;RO=49;RPL=0;RPP=20.3821;RPPR=109.412;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:5,8:5:201:8:327:-25.8867,0,-14.5577 0/0:20:20,0:20:799:0:0:0,-6.0206,-72.2296 0/0:24:24,0:24:970:0:0:0,-7.22472,-87.5979 dDocent_Contig_7064 10 . A G 285.378 . AB=0.266667;ABP=24.2907;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=81;DPB=81;DPRA=0.625;EPP=29.068;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.985507;PAO=0;PQA=0;PQR=0;PRO=0;QA=485;QR=2639;RO=69;RPL=0;RPP=29.068;RPPR=152.842;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:7,8:7:261:8:325:-25.1036,0,-19.3273 0/0:36:36,0:36:1358:0:0:0,-10.8371,-122.496 0/1:30:26,4:26:1020:4:160:-5.7529,0,-83.0657 dDocent_Contig_7065 11 . T A 293.898 . AB=0.454545;ABP=3.20771;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X2M1X;DP=21;DPB=21;DPRA=2.2;EPP=13.8677;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=472;RO=12;RPL=0;RPP=13.8677;RPPR=29.068;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:4:0,0,4:0:0:0,4:0,164:-15.1499,-15.1499,-15.1499,-1.20412,-1.20412,0 0|1:11:6,5,0:6:237:5,0:201,0:-15.1598,0,-18.3919,-16.966,-19.897,-36.4646 0|0:6:6,0,0:6:235:0,0:0,0:0,-1.80618,-21.5215,-1.80618,-21.5215,-21.5215 dDocent_Contig_7066 11 . T C 142.903 . AB=0.625;ABP=4.09604;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=70;DPB=70;DPRA=0.258065;EPP=13.8677;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=2597;RO=65;RPL=0;RPP=13.8677;RPPR=144.156;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:30,0:30:1182:0:0:0,-9.0309,-106.659 0/1:8:3,5:3:115:5:195:-15.5122,0,-8.31575 0/0:32:32,0:32:1300:0:0:0,-9.63296,-117.261 dDocent_Contig_7067 15 . T G 100.408 . AB=0.238095;ABP=15.5221;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=3X;DP=26;DPB=26;DPRA=2.1;EPP=13.8677;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=830;RO=21;RPL=0;RPP=13.8677;RPPR=48.6112;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:11:9,2:9:348:2:77:-3.99687,0,-28.3656 0|0:5:5,0:5:201:0:0:0,-1.50515,-18.4709 0|1:10:7,3:7:281:3:122:-8.36219,0,-22.6519 dDocent_Contig_7068 115 . G T 111.743 . AB=0.238095;ABP=15.5221;AC=3;AF=0.5;AN=6;AO=5;CIGAR=1X2M1X1M;DP=39;DPB=39.4;DPRA=0;EPP=6.91895;EPPR=65.983;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=181;QR=897;RO=29;RPL=0;RPP=13.8677;RPPR=65.983;RPR=5;RUN=1;SAF=4;SAP=6.91895;SAR=1;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:16:14,0,2,0:14:426:0,2,0:0,71,0:-1.9251,-6.13952,-40.213,0,-34.422,-33.8199,-6.13952,-40.213,-34.422,-40.213 1|1:5:0,2,3,0:0:0:2,3,0:32,110,0:-11.0094,-9.35781,-8.75575,-1.87641,0,-0.973322,-11.0094,-9.35781,-1.87641,-11.0094 0|0:18:15,0,0,2:15:471:0,0,2:0,0,68:-1.00053,-5.51598,-43.3563,-5.51598,-43.3563,-43.3563,0,-37.8376,-37.8376,-37.2355 dDocent_Contig_7070 34 . C T 149.924 . AB=0.146341;ABP=47.552;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=3M1X11M;DP=52;DPB=51;DPRA=0;EPP=16.0391;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=1594;RO=41;RPL=0;RPP=16.0391;RPPR=92.0407;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:11:8,0,3,0:8:314:0,3,0:0,117,0:-7.59888,-10.0071,-35.8339,0,-26.2171,-25.314,-10.0071,-35.8339,-26.2171,-35.8339 0|1:30:23,2,0,5:23:892:2,0,5:64,0,201:-9.69843,-11.4888,-84.1545,-16.6221,-84.7565,-89.9085,0,-68.1902,-73.3415,-71.8363 0|1:11:10,0,0,1:10:388:0,0,1:0,0,37:-0.386499,-3.3968,-35.2897,-3.3968,-35.2897,-35.2897,0,-32.2643,-32.2643,-31.9632 dDocent_Contig_7071 26 . T A 56.2865 . AB=0.428571;ABP=3.32051;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X1M1X;DP=35;DPB=35;DPRA=0.5;EPP=9.52472;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.78125;PAO=0;PQA=0;PQR=0;PRO=0;QA=96;QR=1225;RO=32;RPL=0;RPP=9.52472;RPPR=72.4974;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=28;SRP=42.0968;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:13:13,0:13:481:0:0:0,-3.91339,-43.6267 0|0:15:15,0:15:587:0:0:0,-4.51545,-53.1698 0|1:7:4,3:4:157:3:96:-6.8505,0,-12.4016 dDocent_Contig_7072 44 . T G 1056.83 . AB=0.5625;ABP=4.6389;AC=4;AF=0.666667;AN=6;AO=35;CIGAR=1X;DP=56;DPB=56;DPRA=0;EPP=79.0118;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1349;QR=833;RO=21;RPL=0;RPP=79.0118;RPPR=48.6112;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:9,10:9:354:10:399:-30.5498,0,-26.4972 0/1:29:12,17:12:479:17:629:-48.1945,0,-34.7266 1/1:8:0,8:0:0:8:321:-29.2579,-2.40824,0 dDocent_Contig_7073 68 . C A 184.397 . AB=0.307692;ABP=11.3621;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=43;DPB=43;DPRA=0.764706;EPP=20.3821;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=308;QR=1316;RO=35;RPL=8;RPP=20.3821;RPPR=79.0118;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:1,6:1:39:6:230:-18.958,0,-1.78935 0/0:17:17,0:17:623:0:0:0,-5.11751,-56.3821 0/1:19:17,2:17:654:2:78:-1.6839,0,-53.4771 dDocent_Contig_7075 51 . T A 122.639 . AB=0.194444;ABP=32.2045;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X2M1X2M1X;DP=64;DPB=64;DPRA=0.642857;EPP=18.2106;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=274;QR=2192;RO=57;RPL=7;RPP=18.2106;RPPR=126.784;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:28:28,0:28:1078:0:0:0,-8.42884,-97.3176 0|1:16:12,4:12:476:4:156:-9.60047,0,-38.376 0|1:20:17,3:17:638:3:118:-4.98212,0,-51.7241 dDocent_Contig_7076 85 . C T 40.3689 . AB=0.1875;ABP=16.582;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=49;DPB=49;DPRA=0.969697;EPP=9.52472;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=108;QR=1618;RO=46;RPL=3;RPP=9.52472;RPPR=102.898;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:810:0:0:0,-6.92369,-73.221 0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443 0/1:16:13,3:13:448:3:108:-5.25869,0,-35.8306 dDocent_Contig_7077 9 . G T 56.4544 . AB=0.103448;ABP=42.621;AC=0;AF=0;AN=6;AO=3;CIGAR=1X2M1X3M1X;DP=104;DPB=104;DPRA=0.763158;EPP=9.52472;EPPR=198.443;GTI=0;LEN=1;MEANALT=3;MQM=7;MQMR=59.3778;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0.955556;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=3412;RO=90;RPL=0;RPP=9.52472;RPPR=198.443;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:37:33,0,4,0,0:33:1255:0,4,0,0:0,157,0,0:-1.03521,-10.9692,-113.938,0,-103.304,-102.1,-10.9692,-113.938,-103.304,-113.938,-10.9692,-113.938,-103.304,-113.938,-113.938 0|0:29:21,3,1,4,0:21:779:3,1,4,0:119,38,158,0:-6.80863,-12.2614,-74.9799,-10.372,-73.1365,-73.7893,0,-62.8774,-61.0799,-62.6239,-13.1303,-75.883,-74.0903,-63.828,-76.8381 0|0:38:36,0,0,0,2:36:1378:0,0,0,2:0,0,0,75:0,-10.8371,-123.81,-10.8371,-123.81,-123.81,-10.8371,-123.81,-123.81,-123.81,-4.3188,-117.667,-117.667,-117.667,-117.065 dDocent_Contig_7078 15 . T C 1750.83 . AB=0.0490798;ABP=290.884;AC=0;AF=0;AN=6;AO=8;CIGAR=1X2M1X2M1X;DP=163;DPB=163;DPRA=0;EPP=20.3821;EPPR=61.6401;GTI=0;LEN=1;MEANALT=7.66667;MQM=42.125;MQMR=59.7778;NS=3;NUMALT=8;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=299;QR=1040;RO=27;RPL=0;RPP=20.3821;RPPR=61.6401;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:65:14,0,1,6,3,4,5,22,10:14:538:0,1,6,3,4,5,22,10:0,38,231,118,153,189,864,384:-66.849,-71.0634,-115.225,-68.1361,-112.298,-111.997,-52.3885,-96.55,-93.6227,-94.7438,-61.3561,-105.518,-102.59,-86.8429,-104.615,-58.6905,-102.852,-99.9246,-84.1771,-93.1448,-101.648,-56.8044,-100.965,-98.0379,-82.2906,-91.2582,-88.5925,-99.4601,0,-44.164,-41.2366,-25.4885,-34.4562,-31.7907,-29.9052,-37.5413,-39.545,-83.7067,-80.7794,-65.0318,-73.9995,-71.3338,-69.4475,-12.6442,-80.6964 0|0:54:9,0,2,2,3,2,7,20,7:9:354:0,2,2,3,2,7,20,7:0,72,71,118,79,272,794,273:-62.341,-65.0503,-94.1707,-59.4528,-88.5731,-87.971,-59.6239,-88.7441,-83.1466,-88.142,-55.6104,-84.731,-79.1334,-79.3045,-83.8279,-58.609,-87.7296,-82.132,-82.3031,-78.2899,-87.1276,-44.2866,-73.4066,-67.8093,-67.9804,-63.9671,-66.9656,-71.2994,0,-29.1241,-23.527,-23.6983,-19.6838,-22.6825,-8.36074,-23.1035,-42.6088,-71.7298,-66.1323,-66.3034,-62.29,-65.2887,-50.9661,-6.681,-69.6226 0|0:44:4,3,5,4,1,0,4,16,6:4:148:3,5,4,1,0,4,16,6:118,189,143,39,0,156,565,229:-49.6094,-41.1036,-52.3086,-35.8393,-38.2373,-46.4422,-39.4068,-41.8048,-36.5406,-50.3105,-47.6068,-50.0049,-44.7405,-48.3079,-59.4135,-50.8135,-53.2117,-47.9473,-51.5146,-59.7145,-62.9212,-38.9203,-41.3184,-36.0541,-39.6216,-47.8215,-51.0282,-49.8241,-6.68117,-9.07807,-3.81544,-7.38352,-15.5814,-18.7882,-6.89629,-13.9717,-32.025,-34.423,-29.1586,-32.7264,-40.9265,-44.1333,-32.2398,0,-42.3272 dDocent_Contig_7080 13 . T C 749.797 . AB=0.5;ABP=3.0103;AC=4;AF=0.666667;AN=6;AO=24;CIGAR=1X5M;DP=48;DPB=48;DPRA=0;EPP=55.1256;EPPR=46.4397;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=943;QR=792;RO=20;RPL=0;RPP=55.1256;RPPR=46.4397;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:17:0,2,14:0:0:2,14:81,553:-52.244,-45.5631,-44.9611,-6.7289,0,-2.51448 0|1:11:7,0,4:7:277:0,4:0,163:-11.7471,-13.8543,-36.6445,0,-23.1929,-21.9888 0|1:20:13,0,6:13:515:0,6:0,227:-14.6944,-18.6078,-61.0089,0,-42.4107,-40.6046 dDocent_Contig_7081 9 . G A 1039.6 . AB=0.131579;ABP=92.6121;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X4M;DP=102;DPB=102;DPRA=0;EPP=24.725;EPPR=100.727;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=380;QR=1716;RO=45;RPL=0;RPP=24.725;RPPR=100.727;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:49:24,2,16,7:24:897:2,16,7:73,618,269:-43.535,-44.7971,-117.632,0,-67.4745,-68.6216,-28.6766,-96.1498,-51.3527,-100.006 0|1:27:12,0,12,3:12:470:0,12,3:0,469,111:-34.9626,-38.575,-77.2254,0,-38.6654,-35.053,-29.4985,-68.1471,-29.5891,-67.244 0|1:26:9,10,7,0:9:349:10,7,0:388,261,0:-29.1788,0,-25.6714,-10.5308,-7.32475,-37.0969,-31.8881,-28.6817,-39.2041,-60.5635 dDocent_Contig_7082 140 . T A 170.36 . AB=0.388889;ABP=4.9405;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=34;DPB=34;DPRA=0.5625;EPP=18.2106;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=267;QR=917;RO=27;RPL=0;RPP=18.2106;RPPR=61.6401;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:5:3,2:3:103:2:76:-5.70952,0,-8.10487 0/1:13:8,5:8:262:5:191:-13.6453,0,-19.9855 0/0:16:16,0:16:552:0:0:0,-4.81648,-50.005 dDocent_Contig_7083 44 . A C 699.897 . AB=0.555556;ABP=4.21667;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=45;DPB=45;DPRA=0;EPP=57.2971;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=958;QR=786;RO=20;RPL=0;RPP=57.2971;RPPR=46.4397;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:11,3:11:423:3:105:-5.5788,0,-34.2008 0/1:8:2,6:2:79:6:230:-18.657,0,-5.089 0/1:23:7,16:7:284:16:623:-49.4705,0,-19.0101 dDocent_Contig_7085 116 . T C 349.684 . AB=0.367347;ABP=10.4997;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X;DP=49;DPB=49;DPRA=0;EPP=42.0968;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.7742;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=583;QR=1048;RO=31;RPL=0;RPP=42.0968;RPPR=70.3259;RPR=18;RUN=1;SAF=0;SAP=42.0968;SAR=18;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:20,5:20:687:5:164:-7.55751,0,-54.6248 0/1:9:5,4:5:170:4:136:-9.86659,0,-12.9254 0/1:15:6,9:6:191:9:283:-21.261,0,-12.9872 dDocent_Contig_7086 8 . A C 12771 . AB=0.0375204;ABP=1141.84;AC=0;AF=0;AN=6;AO=23;CIGAR=1X3M1X1M1X;DP=613;DPB=613;DPRA=0;EPP=52.9542;EPPR=157.185;GTI=0;LEN=1;MEANALT=10.6667;MQM=59.7391;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=883;QR=2751;RO=71;RPL=0;RPP=52.9542;RPPR=157.185;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:256:24,7,19,174:24:921:7,19,174:268,738,6664:-539.483,-524.715,-598.206,-488.875,-542.481,-558.754,0,-53.6078,-17.7688,-23.2216 0|0:193:17,10,9,141:17:657:10,9,141:384,346,5513:-448.112,-421.719,-472.671,-424.824,-447.276,-476.077,0,-22.4535,-25.5585,-11.5193 0|0:164:30,6,6,93:30:1173:6,6,93:231,225,3674:-293.218,-283.282,-377.917,-285.184,-362.658,-379.819,0,-77.479,-79.3823,-68.4502 dDocent_Contig_7087 67 . C T 44.3683 . AB=0.666667;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=55;DPB=55;DPRA=0;EPP=11.6962;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=133;QR=1740;RO=51;RPL=4;RPP=11.6962;RPPR=113.755;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:29,1:29:987:1:35:0,-5.53227,-85.6408 0/0:22:21,1:21:718:1:29:0,-3.723,-62.0396 0/1:3:1,2:1:35:2:69:-5.64957,0,-2.59554 dDocent_Contig_7088 41 . G T 112.458 . AB=0.193548;ABP=28.2974;AC=1;AF=0.25;AN=4;AO=6;CIGAR=1X;DP=44;DPB=44;DPRA=2.38462;EPP=16.0391;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=1494;RO=38;RPL=0;RPP=16.0391;RPPR=85.5263;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:511:0:0:0,-3.91339,-46.3357 0/1:31:25,6:25:983:6:240:-12.6437,0,-79.4356 ./.:.:.:.:.:.:.:. dDocent_Contig_7089 1 . N G 75.9611 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:80:-7.59179,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_7091 11 . C T 587.922 . AB=0.115385;ABP=36.4176;AC=0;AF=0;AN=6;AO=4;CIGAR=2X1M1X3M2X1M;DP=52;DPB=52;DPRA=0;EPP=11.6962;EPPR=59.4686;GTI=0;LEN=1;MEANALT=2.5;MQM=19;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=1015;RO=26;RPL=0;RPP=11.6962;RPPR=59.4686;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:26:19,0,3,3:19:745:0,3,3:0,90,57:-1.23118,-6.95075,-68.321,0,-61.4099,-60.5068,-3.595,-64.9247,-58.0186,-64.0216 0|0:15:0,0,14,1:0:0:0,14,1:0,549,19:-49.2562,-49.2562,-49.2562,-4.21442,-4.21442,0,-48.131,-48.131,-2.91374,-47.83 0|0:11:7,4,0,0:7:270:4,0,0:148,0,0:-10.3679,0,-21.3521,-12.4751,-22.5562,-34.6559,-12.4751,-22.5562,-34.6559,-34.6559 dDocent_Contig_7092 70 . T C 46.5928 . AB=0.0697674;ABP=72.1439;AC=2;AF=0.333334;AN=6;AO=3;CIGAR=1X2M;DP=65;DPB=65;DPRA=0.977273;EPP=9.52472;EPPR=126.784;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.982456;PAO=0;PQA=0;PQR=0;PRO=0;QA=107;QR=1900;RO=57;RPL=3;RPP=9.52472;RPPR=126.784;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:34:27,5,2:27:890:5,2:169,73:-5.55262,0,-70.408,-7.7083,-65.9462,-79.0451 0|0:22:22,0,0:22:740:0,0:0,0:0,-6.62266,-66.9129,-6.62266,-66.9129,-66.9129 0|1:9:8,0,1:8:270:0,1:0,34:-0.689641,-3.09788,-24.9793,0,-22.2211,-21.92 dDocent_Contig_7093 35 . A G 76.5011 . AB=0.333333;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=75;DPB=75;DPRA=0.272727;EPP=9.52472;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=2772;RO=72;RPL=0;RPP=9.52472;RPPR=159.356;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:6,3:6:230:3:121:-8.57093,0,-18.3514 0/0:43:43,0:43:1667:0:0:0,-12.9443,-150.263 0/0:23:23,0:23:875:0:0:0,-6.92369,-79.0519 dDocent_Contig_7094 43 . G A 92.8172 . AB=0.307692;ABP=7.18621;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=59;DPB=59;DPRA=0.565217;EPP=11.6962;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=2146;RO=55;RPL=0;RPP=11.6962;RPPR=122.441;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1214:0:0:0,-9.33193,-109.535 0/1:13:9,4:9:352:4:156:-10.5036,0,-28.1251 0/0:15:15,0:15:580:0:0:0,-4.51545,-52.5298 dDocent_Contig_7095 15 . C A 301.424 . AB=0.237288;ABP=38.3795;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=10.1038;EPPR=127.319;GTI=0;LEN=1;MEANALT=1;MQM=59.0667;MQMR=59.8154;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=0.8;PAO=0;PQA=0;PQR=0;PRO=0;QA=587;QR=2584;RO=65;RPL=0;RPP=35.5824;RPPR=144.156;RPR=15;RUN=1;SAF=11;SAP=10.1038;SAR=4;SRF=63;SRP=127.319;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:20,1:20:798:1:37:0,-2.6238,-68.4415 0/1:25:19,6:19:756:6:237:-14.1768,0,-60.8352 0/1:34:26,8:26:1030:8:313:-18.2843,0,-82.729 dDocent_Contig_7096 77 . G A 306.685 . AB=0.333333;ABP=12.42;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=71;DPB=71;DPRA=0.609375;EPP=31.2394;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=489;QR=2117;RO=58;RPL=13;RPP=31.2394;RPPR=128.956;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:32,0:32:1190:0:0:0,-9.63296,-107.398 0/1:23:13,10:13:478:10:378:-27.4498,0,-36.4349 0/1:16:13,3:13:449:3:111:-5.53744,0,-35.9157 dDocent_Contig_7097 110 . G A 63.2532 . 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AB=0.435897;ABP=5.79424;AC=3;AF=0.5;AN=6;AO=34;CIGAR=1X;DP=78;DPB=78;DPRA=0;EPP=76.8404;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1317;QR=1558;RO=43;RPL=0;RPP=76.8404;RPPR=96.3836;RPR=34;RUN=1;SAF=0;SAP=76.8404;SAR=34;SRF=0;SRP=96.3836;SRR=43;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:17,5:17:636:5:201:-11.8479,0,-50.9498 0/1:27:21,6:21:744:6:234:-13.3031,0,-59.1379 0/1:29:5,23:5:178:23:882:-70.8824,0,-7.55196 dDocent_Contig_7102 10 . A C 210.682 . AB=0.421053;ABP=4.03889;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=20;DPB=20;DPRA=9.5;EPP=20.3821;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=315;QR=472;RO=12;RPL=0;RPP=20.3821;RPPR=29.068;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:5,2:5:193:2:78:-5.29609,0,-15.6329 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/1:12:6,6:6:238:6:237:-18.088,0,-18.1809 dDocent_Contig_7103 31 . T C 5540.57 . AB=0.102941;ABP=468.6;AC=1;AF=0.166667;AN=6;AO=35;CIGAR=2X5M;DP=340;DPB=340;DPRA=0;EPP=79.0118;EPPR=152.842;GTI=0;LEN=1;MEANALT=6.33333;MQM=60;MQMR=60;NS=3;NUMALT=6;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1386;QR=2696;RO=69;RPL=0;RPP=79.0118;RPPR=152.842;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:123:36,0,3,2,11,4,62:36:1395:0,3,2,11,4,62:0,115,81,422,155,2480:-193.448,-204.285,-318.878,-194.847,-309.44,-308.537,-197.606,-312.199,-302.761,-311.597,-169.655,-284.247,-274.809,-277.568,-280.936,-191.555,-306.148,-296.71,-299.469,-271.517,-304.944,0,-114.595,-105.156,-107.915,-79.9634,-101.864,-95.9309 0|0:115:16,5,8,8,2,6,69:16:625:5,8,8,2,6,69:199,322,321,80,243,2724:-219.296,-207.727,-257.599,-197.574,-232.566,-246.543,-197.662,-232.654,-222.501,-246.631,-217.522,-252.514,-242.361,-242.449,-268.297,-204.074,-239.066,-228.913,-229.001,-248.862,-253.645,0,-34.9891,-24.8354,-24.924,-44.7844,-31.3359,-30.6034 1|0:102:17,10,0,6,22,6,40:17:676:10,0,6,22,6,40:385,0,231,884,237,1613:-145.03,-118.543,-171.19,-150.147,-174.2,-205.805,-131.185,-155.239,-186.843,-185.037,-77.2998,-101.354,-132.958,-113.996,-126.335,-130.646,-154.7,-186.304,-167.342,-113.457,-184.498,-17.1908,-41.2457,-72.8496,-53.8879,0,-53.3484,-60.8084 dDocent_Contig_7104 65 . G A 472.08 . AB=0.395349;ABP=7.10075;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=55;DPB=55;DPRA=1.79167;EPP=39.9253;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=686;QR=1503;RO=38;RPL=17;RPP=39.9253;RPPR=85.5263;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:459:0:0:0,-3.61236,-41.6559 0/1:14:7,7:7:279:7:280:-21.3566,0,-21.2664 0/1:29:19,10:19:765:10:406:-28.1702,0,-60.4416 dDocent_Contig_7105 69 . G A 3452.31 . AB=0.5671;ABP=12.044;AC=1;AF=0.25;AN=4;AO=131;CIGAR=1X;DP=236;DPB=236;DPRA=46.2;EPP=287.473;EPPR=231.015;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4619;QR=3615;RO=105;RPL=131;RPP=287.473;RPPR=231.015;RPR=0;RUN=1;SAF=131;SAP=287.473;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:231:100,131:100:3447:131:4619:-346.328,0,-240.901 ./.:.:.:.:.:.:.:. 0/0:5:5,0:5:168:0:0:0,-1.50515,-15.4509 dDocent_Contig_7106 61 . G C 159.5 . AB=0.205882;ABP=28.557;AC=4;AF=0.666667;AN=6;AO=8;CIGAR=1X2M1X;DP=35;DPB=35;DPRA=0;EPP=20.3821;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=305;QR=1004;RO=26;RPL=8;RPP=20.3821;RPPR=59.4686;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:1:0,1:0:0:1:40:-3.99568,-0.30103,0 0|1:9:5,4:5:198:4:150:-11.1552,0,-15.4883 0|1:25:21,3:21:806:3:115:-3.11217,0,-65.249 dDocent_Contig_7109 10 . A G 191.592 . AB=0.636364;ABP=4.78696;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X1M1X2M1X2M1X2M1X2M3X;DP=44;DPB=44;DPRA=1.7;EPP=20.3821;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=296;QR=1383;RO=36;RPL=0;RPP=20.3821;RPPR=81.1833;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:11:4,7:4:160:7:256:-20.08,0,-11.4725 0|0:10:10,0:10:389:0:0:0,-3.0103,-35.3679 0|0:23:22,1:22:834:1:40:0,-2.92801,-71.3799 dDocent_Contig_7110 38 . T G 1027.96 . AB=0.486842;ABP=3.12459;AC=3;AF=0.5;AN=6;AO=37;CIGAR=1X;DP=76;DPB=76;DPRA=0;EPP=83.3548;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1426;QR=1492;RO=39;RPL=0;RPP=83.3548;RPPR=87.6977;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:20,23:20:751:23:887:-67.196,0,-54.9582 0/1:24:12,12:12:473:12:458:-34.3398,0,-35.6966 0/1:9:7,2:7:268:2:81:-4.97646,0,-21.7722 dDocent_Contig_7111 81 . G T 265.497 . AB=0.3;ABP=20.3821;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=84;DPB=84;DPRA=0;EPP=39.9253;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=549;QR=2234;RO=67;RPL=17;RPP=39.9253;RPPR=148.499;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:22,7:22:754:7:239:-13.1141,0,-59.4494 0/1:21:13,8:13:435:8:242:-15.7544,0,-33.1505 0/0:34:32,2:32:1045:2:68:0,-3.77709,-87.8876 dDocent_Contig_7112 40 . C A 624.003 . AB=0.666667;ABP=6.62942;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=5M1X;DP=39;DPB=36.5;DPRA=0;EPP=24.725;EPPR=33.4109;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=371;QR=524;RO=14;RPL=0;RPP=24.725;RPPR=33.4109;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:13:6,7,0:6:223:7,0:249,0:-18.8318,0,-16.5107,-20.638,-18.618,-38.8919 0|1:15:3,2,10:3:117:2,10:76,371:-29.4409,-24.1095,-33.1289,0,-3.39399,-6.61275 0|0:11:5,6,0:5:184:6,0:231,0:-17.8443,0,-13.6022,-19.3494,-15.4084,-34.3825 dDocent_Contig_7113 64 . T C 121.726 . AB=0.214286;ABP=22.8638;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=68;DPB=68;DPRA=1.4;EPP=16.0391;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=235;QR=2104;RO=62;RPL=6;RPP=16.0391;RPPR=137.642;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:22,6:22:751:6:235:-13.092,0,-59.4654 0/0:38:38,0:38:1277:0:0:0,-11.4391,-115.2 0/0:2:2,0:2:76:0:0:0,-0.60206,-7.21426 dDocent_Contig_7114 19 . G A 37.5475 . AB=0.2;ABP=10.8276;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=26;DPB=26;DPRA=1.25;EPP=7.35324;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=952;RO=24;RPL=0;RPP=7.35324;RPPR=55.1256;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:8,2:8:312:2:81:-4.67543,0,-25.4318 0/0:9:9,0:9:355:0:0:0,-2.70927,-32.3107 0/0:7:7,0:7:285:0:0:0,-2.10721,-26.0244 dDocent_Contig_7115 31 . G T 297.176 . AB=0.285714;ABP=22.5536;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=68;DPB=68;DPRA=5.15789;EPP=33.4109;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=504;QR=1874;RO=54;RPL=0;RPP=33.4109;RPPR=120.27;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:442:0:0:0,-3.91339,-40.1042 0/1:49:35,14:35:1213:14:504:-30.9394,0,-94.7135 0/0:6:6,0:6:219:0:0:0,-1.80618,-20.064 dDocent_Contig_7117 106 . N C 7526.66 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=379;CIGAR=2X;DP=385;DPB=1811.5;DPRA=0;EPP=817.335;EPPR=0;GTI=0;LEN=1;MEANALT=1.66667;MQM=26.7784;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.248021;PAIREDR=0;PAO=2853;PQA=95932;PQR=0;PRO=0;QA=12831;QR=0;RO=0;RPL=0;RPP=825.998;RPPR=0;RPR=379;RUN=1;SAF=1;SAP=817.335;SAR=378;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:135:0,134:0:0:134:4538:-259.619,-40.338,0 1|1:114:0,114:0:0:114:3820:-244.812,-34.3174,0 1|1:136:0,131:0:0:131:4473:-247.758,-39.4349,0 dDocent_Contig_7118 8 . A G 316.208 . AB=0.461538;ABP=3.34437;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=37;DPB=37;DPRA=1.18182;EPP=29.068;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=456;QR=963;RO=25;RPL=0;RPP=29.068;RPPR=57.2971;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:2,5:2:78:5:187:-15.0845,0,-5.29626 0/0:11:11,0:11:421:0:0:0,-3.31133,-38.2421 0/1:19:12,7:12:464:7:269:-18.855,0,-36.3921 dDocent_Contig_7119 202 . A C 762.389 . AB=0.533333;ABP=3.15506;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X1M1X;DP=46;DPB=46;DPRA=1.14286;EPP=57.2971;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=900;QR=808;RO=21;RPL=25;RPP=57.2971;RPPR=48.6112;RPR=0;RUN=1;SAF=0;SAP=57.2971;SAR=25;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:14:14,0:14:540:0:0:0,-4.21442,-48.9459 0|1:15:7,8:7:268:8:290:-21.9324,0,-19.9685 1|1:17:0,17:0:0:17:610:-55.2272,-5.11751,0 dDocent_Contig_7120 159 . G T 520.531 . AB=0.4;ABP=7.35324;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=46.4397;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=775;QR=1203;RO=30;RPL=20;RPP=46.4397;RPPR=68.1545;RPR=0;RUN=1;SAF=0;SAP=46.4397;SAR=20;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:15,5:15:597:5:177:-10.2454,0,-48.0456 0/1:15:9,6:9:363:6:234:-16.915,0,-28.5183 0/1:15:6,9:6:243:9:364:-28.6093,0,-17.7325 dDocent_Contig_7122 8 . A G 1106.05 . AB=0.310345;ABP=48.3117;AC=3;AF=0.5;AN=6;AO=45;CIGAR=1X3M1X4M;DP=145;DPB=145;DPRA=0;EPP=100.727;EPPR=183.243;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.987952;PAO=0;PQA=0;PQR=0;PRO=0;QA=1695;QR=3198;RO=83;RPL=0;RPP=100.727;RPPR=183.243;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:61:36,0,25,0:36:1388:0,25,0:0,950,0:-67.4487,-78.2858,-192.26,0,-114.356,-106.831,-78.2858,-192.26,-114.356,-192.26 0|1:35:23,0,9,2:23:872:0,9,2:0,345,81:-21.4463,-28.37,-99.8743,0,-71.5586,-68.8493,-21.6827,-93.1933,-64.8766,-92.5912 0|1:49:24,5,11,7:24:938:5,11,7:191,400,284:-25.4268,-16.9812,-92.5993,0,-61.4472,-73.8043,-9.2202,-70.6792,-53.691,-84.2419 dDocent_Contig_7123 32 . G A 813.965 . AB=0.428571;ABP=6.1124;AC=3;AF=0.5;AN=6;AO=30;CIGAR=1X;DP=70;DPB=70;DPRA=0;EPP=68.1545;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1168;QR=1546;RO=40;RPL=0;RPP=68.1545;RPPR=89.8692;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:14,7:14:535:7:273:-18.6155,0,-42.1709 0/1:34:15,19:15:582:19:741:-56.7811,0,-42.4874 0/1:15:11,4:11:429:4:154:-9.71655,0,-34.4495 dDocent_Contig_7125 9 . C T 281.151 . AB=0.159091;ABP=136.26;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X3M1X;DP=132;DPB=132;DPRA=0;EPP=48.6112;EPPR=244.044;GTI=0;LEN=1;MEANALT=1;MQM=57;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.952381;PAIREDR=0.954955;PAO=0;PQA=0;PQR=0;PRO=0;QA=796;QR=4287;RO=111;RPL=0;RPP=48.6112;RPPR=244.044;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=111;SRP=244.044;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:40:34,6:34:1315:6:213:-6.29333,0,-106.592 0|1:51:40,11:40:1530:11:429:-23.6044,0,-122.617 0|1:41:37,4:37:1442:4:154:-1.88977,0,-117.703 dDocent_Contig_7126 14 . C G 133.182 . AB=0.24;ABP=17.6895;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=69;DPB=69;DPRA=1.13636;EPP=16.0391;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=2544;RO=63;RPL=0;RPP=16.0391;RPPR=139.813;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:734:0:0:0,-5.41854,-66.3832 0/0:26:26,0:26:1039:0:0:0,-7.82678,-93.8038 0/1:25:19,6:19:771:6:241:-14.54,0,-62.1839 dDocent_Contig_7127 13 . C G 283.729 . AB=0.366667;ABP=7.64277;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=49;DPB=49;DPRA=0;EPP=29.068;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=473;QR=1497;RO=37;RPL=0;RPP=29.068;RPPR=83.3548;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:18,1:18:730:1:40:0,-1.72389,-62.0282 0/1:14:12,2:12:483:2:81:-3.47131,0,-39.6066 0/1:16:7,9:7:284:9:352:-27.219,0,-21.1169 dDocent_Contig_7130 21 . G A 42.4463 . AB=0.176471;ABP=18.4661;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=39;DPB=39;DPRA=0.386364;EPP=9.52472;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1393;RO=36;RPL=0;RPP=9.52472;RPPR=81.1833;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:12,2:12:454:2:82:-3.56526,0,-36.9761 0/1:3:2,1:2:81:1:39:-2.99347,0,-6.78264 0/0:22:22,0:22:858:0:0:0,-6.62266,-77.5252 dDocent_Contig_7131 8 . A C 312.585 . AB=0.15261;ABP=264.014;AC=3;AF=0.5;AN=6;AO=38;CIGAR=1X;DP=249;DPB=249;DPRA=0;EPP=69.0688;EPPR=461.191;GTI=0;LEN=1;MEANALT=1;MQM=39.4737;MQMR=59.545;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=0;PAIREDR=0.947867;PAO=0;PQA=0;PQR=0;PRO=0;QA=1443;QR=8027;RO=211;RPL=0;RPP=85.5263;RPPR=461.191;RPR=38;RUN=1;SAF=36;SAP=69.0688;SAR=2;SRF=211;SRP=461.191;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:45,6:45:1698:6:229:-4.61332,0,-137.704 0/1:67:52,15:52:1969:15:565:-15.6573,0,-156.552 0/1:131:114,17:114:4360:17:649:-14.7044,0,-353.033 dDocent_Contig_7133 54 . T G 90.4744 . AB=0.266667;ABP=10.1038;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=32;DPB=32;DPRA=1.76471;EPP=11.6962;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=1111;RO=28;RPL=4;RPP=11.6962;RPPR=63.8115;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3,0:3:116:0:0:0,-0.90309,-10.8168 0/1:15:11,4:11:441:4:160:-10.2686,0,-35.5289 0/0:14:14,0:14:554:0:0:0,-4.21442,-50.2021 dDocent_Contig_7134 35 . A G 260.479 . AB=0.357143;ABP=7.97367;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X3M1X;DP=39;DPB=39;DPRA=1.27273;EPP=24.725;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=395;QR=1027;RO=26;RPL=0;RPP=24.725;RPPR=59.4686;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:11:11,0,0:11:442:0,0:0,0:0,-3.31133,-40.1362,-3.31133,-40.1362,-40.1362 0|1:21:11,7,3:11:432:7,3:279,123:-19.6571,0,-33.4108,-12.8128,-25.3621,-47.4377 0|1:7:4,3,0:4:153:3,0:116,0:-8.70957,0,-12.0307,-9.91369,-12.9338,-22.463 dDocent_Contig_7135 9 . C G 513.249 . AB=0.317073;ABP=14.9269;AC=4;AF=0.666667;AN=6;AO=19;CIGAR=1X;DP=47;DPB=47;DPRA=0;EPP=44.2683;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=721;QR=1062;RO=28;RPL=0;RPP=44.2683;RPPR=63.8115;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:12,3:12:451:3:116:-6.30225,0,-36.4215 0/1:26:16,10:16:611:10:373:-26.0923,0,-47.5024 1/1:6:0,6:0:0:6:232:-21.2491,-1.80618,0 dDocent_Contig_7136 173 . A T 713.034 . AB=0.490566;ABP=3.05127;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X;DP=53;DPB=53;DPRA=0;EPP=59.4686;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=999;QR=1072;RO=27;RPL=26;RPP=59.4686;RPPR=61.6401;RPR=0;RUN=1;SAF=0;SAP=59.4686;SAR=26;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:13,9:13:513:9:327:-23.1469,0,-39.8947 0/1:14:6,8:6:237:8:317:-24.6815,0,-17.4887 0/1:17:8,9:8:322:9:355:-27.1918,0,-24.2303 dDocent_Contig_7137 3 . A G 63.0306 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X5I1M1X3M1X1M1X;DP=2;DPB=11.6667;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=11;PQA=376;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:70:-6.29873,-0.60206,0 .:.:.:.:.:.:.:. dDocent_Contig_7138 27 . C T 69.5527 . AB=0.272727;ABP=7.94546;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=25;DPB=25;DPRA=1.57143;EPP=9.52472;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=850;RO=22;RPL=0;RPP=9.52472;RPPR=50.7827;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:8,3:8:310:3:120:-7.87598,0,-24.9494 0/0:6:6,0:6:223:0:0:0,-1.80618,-20.4252 0/0:8:8,0:8:317:0:0:0,-2.40824,-28.8938 dDocent_Contig_7139 26 . A T 90.3606 . AB=0.2;ABP=22.5536;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X1M1X;DP=26;DPB=26;DPRA=12.5;EPP=13.8677;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.2;PAIREDR=0.952381;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=772;RO=21;RPL=0;RPP=13.8677;RPPR=48.6112;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:14:10,4:10:348:4:153:-9.92702,0,-27.431 0|1:11:10,1:10:384:1:40:-0.684349,0,-31.6026 0|0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 dDocent_Contig_7140 10 . G A 204.313 . AB=0.192982;ABP=49.6779;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=57;DPB=57;DPRA=0;EPP=26.8965;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=446;QR=1834;RO=46;RPL=0;RPP=26.8965;RPPR=102.898;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:19,4:19:751:4:159:-7.76826,0,-60.9902 0/1:9:7,2:7:282:2:82:-5.07041,0,-23.0428 0/1:25:20,5:20:801:5:205:-11.3093,0,-64.8785 dDocent_Contig_7141 8 . A G 323.347 . AB=0.348837;ABP=11.5447;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=43;DPB=43;DPRA=0;EPP=35.5824;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=533;QR=1059;RO=28;RPL=0;RPP=35.5824;RPPR=63.8115;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:9,6:9:332:6:216:-15.271,0,-25.7119 0/1:20:13,7:13:497:7:249:-16.7319,0,-39.0561 0/1:8:6,2:6:230:2:68:-4.04817,0,-18.6586 dDocent_Contig_7142 16 . C G 86.0476 . AB=0.2;ABP=22.5536;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X3M1X;DP=26;DPB=26;DPRA=12.5;EPP=13.8677;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=194;QR=760;RO=19;RPL=0;RPP=13.8677;RPPR=44.2683;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:14:9,3,2:9:362:3,2:115,76:-6.73112,0,-28.9481,-3.20992,-23.6234,-32.4551 0|1:11:9,2,0:9:357:2,0:79,0:-4.1863,0,-29.1811,-6.89557,-29.7831,-36.2838 0|0:1:1,0,0:1:41:0,0:0,0:0,-0.30103,-4.09457,-0.30103,-4.09457,-4.09457 dDocent_Contig_7144 90 . G T 227.858 . AB=0.454545;ABP=3.40511;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=28;DPB=28;DPRA=1.83333;EPP=24.725;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=345;QR=626;RO=18;RPL=10;RPP=24.725;RPPR=42.0968;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:208:0:0:0,-1.80618,-19.0596 0/1:14:10,4:10:348:4:136:-8.3614,0,-27.4416 0/1:8:2,6:2:70:6:209:-16.7428,0,-4.23916 dDocent_Contig_7145 12 . G C 167.028 . AB=0.16129;ABP=64.7922;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=91;DPB=91;DPRA=0;EPP=29.068;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=469;QR=3069;RO=79;RPL=0;RPP=29.068;RPPR=174.557;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:43,4:43:1682:4:156:-0.266536,0,-137.454 0/1:15:9,6:9:362:6:245:-17.914,0,-28.4285 0/0:29:27,2:27:1025:2:68:0,-2.27524,-86.0763 dDocent_Contig_7146 30 . G A 80.7564 . AB=0.235294;ABP=13.3567;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=34;DPB=34;DPRA=2;EPP=11.6962;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=1201;RO=30;RPL=0;RPP=11.6962;RPPR=68.1545;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:278:0:0:0,-2.10721,-25.3905 0/1:17:13,4:13:523:4:156:-9.29744,0,-42.2996 0/0:10:10,0:10:400:0:0:0,-3.0103,-36.3577 dDocent_Contig_7147 104 . N T 133.144 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=5X6I4M;DP=4;DPB=6.66667;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=144;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:4:0,4:0:0:4:144:-13.3133,-1.20412,0 dDocent_Contig_7148 55 . T C 85.9052 . AB=0.375;ABP=4.09604;AC=2;AF=0.333334;AN=6;AO=3;CIGAR=1X3M;DP=20;DPB=20;DPRA=1.14286;EPP=9.52472;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=569;RO=15;RPL=3;RPP=9.52472;RPPR=35.5824;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:8:5,0,3:5:198:0,3:0,122:-8.96425,-10.4694,-26.7596,0,-16.6924,-15.7893 0|1:5:3,2,0:3:119:2,0:73,0:-1.90156,0,-9.59024,-2.80465,-10.1923,-12.7309 0|0:7:7,0,0:7:252:0,0:0,0:0,-2.10721,-23.0246,-2.10721,-23.0246,-23.0246 dDocent_Contig_7149 46 . A G 39.9706 . AB=0.333333;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=18;DPB=18;DPRA=1;EPP=7.35324;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=74;QR=542;RO=16;RPL=0;RPP=7.35324;RPPR=37.7539;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:181:0:0:0,-1.80618,-16.5838 0/0:6:6,0:6:220:0:0:0,-1.80618,-20.1537 0/1:6:4,2:4:141:2:74:-5.21868,0,-11.2284 dDocent_Contig_7150 98 . N C 134.103 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=10X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=138;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:72:-6.83672,-0.60206,0 1|1:2:0,2:0:0:2:66:-6.26818,-0.60206,0 dDocent_Contig_7151 22 . C G 410.571 . AB=0.361702;ABP=10.8184;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=47;DPB=47;DPRA=0;EPP=39.9253;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=46.1176;MQMR=59.2;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.966667;PAO=0;PQA=0;PQR=0;PRO=0;QA=668;QR=1211;RO=30;RPL=0;RPP=39.9253;RPPR=68.1545;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:9,10:9:366:10:389:-27.927,0,-27.5856 0/1:11:8,3:8:321:3:118:-7.54158,0,-25.6254 0/1:17:13,4:13:524:4:161:-9.30529,0,-42.3891 dDocent_Contig_7152 12 . C T 204.113 . AB=0.116883;ABP=101.178;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X9M1X;DP=77;DPB=77;DPRA=0;EPP=22.5536;EPPR=74.6689;GTI=0;LEN=1;MEANALT=6.33333;MQM=46.6667;MQMR=60;NS=3;NUMALT=6;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=344;QR=1279;RO=33;RPL=0;RPP=22.5536;RPPR=74.6689;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:25:11,3,0,4,3,0,3:11:421:3,0,4,3,0,3:117,0,154,114,0,117:-9.12747,-2.9469,-36.6043,-12.4388,-37.5074,-46.9951,0,-25.0731,-34.5614,-33.3573,-3.56288,-28.6326,-38.1203,-25.6867,-37.2172,-12.4388,-37.5074,-46.9951,-34.5614,-38.1203,-46.9951,-4.71567,-29.7805,-39.2674,-26.835,-30.3939,-39.2674,-38.3643 0|1:13:2,2,2,2,1,1,1:2:74:2,2,2,1,1,1:80,66,78,38,38,41:-5.95414,-0.0565449,-5.5208,-1.76403,-1.32972,-7.2245,-0.434312,0,-1.70749,-5.89773,-3.43602,-3.00224,-4.70764,-3.37954,-9.1985,-3.46874,-3.03495,-4.74036,-3.41226,-6.4129,-9.23116,-3.94419,-3.51041,-5.21581,-3.88771,-6.88788,-6.92056,-9.70574 0|0:39:20,4,3,3,5,3,0:20:784:4,3,3,5,3,0:156,91,112,194,116,0:-8.88616,-2.43462,-65.7237,-8.23322,-60.2487,-71.8115,-5.86421,-57.8878,-63.6753,-69.4516,0,-52.0252,-57.8132,-55.4521,-62.9867,-5.51318,-57.538,-63.3255,-60.9649,-55.1023,-69.1019,-14.9068,-66.9278,-72.7146,-70.3546,-64.4919,-70.005,-79.3947 dDocent_Contig_7153 29 . 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T C 71.367 . AB=0.148148;ABP=32.0437;AC=3;AF=0.500001;AN=6;AO=4;CIGAR=1X5M1D18M1X;DP=42;DPB=41.6154;DPRA=0;EPP=11.6962;EPPR=55.1256;GTI=0;LEN=1;MEANALT=2.5;MQM=38.75;MQMR=60;NS=3;NUMALT=5;ODDS=6.93889e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=149;QR=937;RO=24;RPL=0;RPP=11.6962;RPPR=55.1256;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:6,2,0,2,0,2:6:238:2,0,2,0,2:38,0,74,0,74:-4.24206,-3.80273,-22.8278,-6.04824,-23.4299,-25.6849,0,-17.4032,-19.6546,-19.0525,-6.04824,-23.4299,-25.6849,-19.6546,-25.6849,-0.113231,-17.5158,-19.767,-13.7346,-19.767,-19.1649 0|1:12:10,0,0,0,2,0:10:383:0,0,0,2,0:0,0,0,73,0:-2.98262,-5.99292,-37.4532,-5.99292,-37.4532,-37.4532,-5.99292,-37.4532,-37.4532,-37.4532,0,-31.8133,-31.8133,-31.8133,-31.2113,-5.99292,-37.4532,-37.4532,-37.4532,-31.8133,-37.4532 0|1:15:8,0,3,0,2,0:8:316:0,3,0,2,0:0,84,0,76,0:-3.44513,-5.85337,-31.9401,0,-26.1131,-25.21,-5.85337,-31.9401,-26.1131,-31.9401,-0.112801,-26.2397,-20.4149,-26.2397,-25.6376,-5.85337,-31.9401,-26.1131,-31.9401,-26.2397,-31.9401 dDocent_Contig_7156 12 . A G 496.329 . 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AB=0.0588235;ABP=175.451;AC=0;AF=0;AN=6;AO=6;CIGAR=1X1M1X1M2D3M1X1M1X9M1X;DP=143;DPB=140.727;DPRA=0;EPP=16.0391;EPPR=42.0968;GTI=0;LEN=1;MEANALT=17;MQM=20;MQMR=60;NS=3;NUMALT=9;ODDS=5.55112e-17;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=701;RO=18;RPL=0;RPP=16.0391;RPPR=42.0968;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:41:6,0,2,3,0,4,0,0,1,4:6:231:0,2,3,0,4,0,0,1,4:0,40,122,0,155,0,0,16,163:-11.3836,-13.1898,-32.1639,-10.7397,-29.7126,-29.1106,-3.21078,-22.1865,-19.7357,-21.2834,-13.1898,-32.1639,-29.7126,-22.1865,-32.1639,-0.448758,-19.4248,-16.9743,-9.44636,-19.4248,-18.2206,-13.1898,-32.1639,-29.7126,-22.1865,-32.1639,-19.4248,-32.1639,-13.1898,-32.1639,-29.7126,-22.1865,-32.1639,-19.4248,-32.1639,-32.1639,-12.3228,-31.2962,-28.8454,-21.3191,-31.2962,-18.5575,-31.2962,-31.2962,-30.9951,0,-18.9763,-16.5257,-8.99774,-18.9763,-6.23579,-18.9763,-18.9763,-18.109,-17.7721 0|0:41:9,3,0,5,0,0,3,3,1,6:9:352:3,0,5,0,0,3,3,1,6:117,0,143,0,0,121,102,16,226:-15.7388,-9.62991,-37.6852,-18.4481,-38.5883,-47.4043,-8.03408,-28.1744,-36.9898,-35.4847,-18.4481,-38.5883,-47.4043,-36.9898,-47.4043,-18.4481,-38.5883,-47.4043,-36.9898,-47.4043,-47.4043,-8.46543,-28.6082,-37.4249,-27.0105,-37.4249,-37.4249,-36.5218,-10.9849,-31.1261,-39.9421,-29.5288,-39.9421,-39.9421,-29.9624,-39.039,-17.5813,-37.7208,-46.5365,-36.123,-46.5365,-46.5365,-36.5573,-39.0747,-46.2355,0,-20.145,-28.962,-18.5484,-28.962,-28.962,-18.981,-21.4996,-28.0949,-27.1558 0|0:61:3,0,4,9,4,0,0,3,6,14:3:118:0,4,9,4,0,0,3,6,14:0,80,323,152,0,0,115,93,567:-61.3673,-62.2704,-71.981,-57.361,-67.0713,-65.8672,-37.0751,-46.7867,-41.8786,-44.0774,-49.8955,-59.6066,-54.6974,-34.4111,-58.4025,-62.2704,-71.981,-67.0713,-46.7867,-59.6066,-71.981,-62.2704,-71.981,-67.0713,-46.7867,-59.6066,-71.981,-71.981,-52.8287,-62.5397,-57.6304,-37.3445,-50.1648,-62.5397,-62.5397,-61.6366,-57.2102,-66.92,-62.0132,-41.7292,-54.5468,-66.92,-66.92,-57.4795,-65.1138,-15.4885,-25.2021,-20.2934,0,-12.824,-25.2021,-25.2021,-15.758,-20.1445,-20.9877 dDocent_Contig_7164 6 . C A 75.9833 . AB=0.141304;ABP=105.825;AC=1;AF=0.166667;AN=6;AO=19;CIGAR=1X;DP=226;DPB=226;DPRA=0;EPP=44.2683;EPPR=54.445;GTI=0;LEN=1;MEANALT=2;MQM=56.2105;MQMR=44.5771;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.0845771;PAO=0;PQA=0;PQR=0;PRO=0;QA=589;QR=6417;RO=201;RPL=0;RPP=44.2683;RPPR=439.476;RPR=19;RUN=1;SAF=0;SAP=44.2683;SAR=19;SRF=66;SRP=54.445;SRR=135;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:92:75,13:75:2364:13:392:-8.51914,0,-162.142 0/0:69:65,3:65:2064:3:100:0,-11.4615,-143.124 0/0:65:61,3:61:1989:3:97:0,-10.498,-159.421 dDocent_Contig_7165 1 . N G 655.482 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=28;CIGAR=1X;DP=28;DPB=28;DPRA=0;EPP=55.4358;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=29.1786;MQMR=0;NS=3;NUMALT=1;ODDS=6.77626e-21;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=923;QR=0;RO=0;RPL=0;RPP=63.8115;RPPR=0;RPR=28;RUN=1;SAF=1;SAP=55.4358;SAR=27;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:12:0,12:0:0:12:401:-28.7048,-3.61236,0 1/1:10:0,10:0:0:10:317:-22.2057,-3.0103,0 1/1:6:0,6:0:0:6:205:-14.1606,-1.80618,0 dDocent_Contig_7167 7 . A G 167.339 . AB=0.181818;ABP=61.0478;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=105;DPB=105;DPRA=0.846154;EPP=29.068;EPPR=204.957;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=425;QR=3555;RO=93;RPL=0;RPP=29.068;RPPR=204.957;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:39,0:39:1496:0:0:0,-11.7402,-134.915 0/1:45:38,7:38:1446:7:267:-10.8466,0,-116.875 0/1:21:16,5:16:613:5:158:-8.20608,0,-49.1871 dDocent_Contig_7168 15 . A G 30.6952 . AB=0.1;ABP=30.8051;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X3M;DP=49;DPB=49;DPRA=1.37931;EPP=7.35324;EPPR=81.4005;GTI=0;LEN=1;MEANALT=4;MQM=52;MQMR=58.725;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.975;PAO=0;PQA=0;PQR=0;PRO=0;QA=74;QR=1561;RO=40;RPL=0;RPP=7.35324;RPPR=89.8692;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=39;SRP=81.4005;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:20:12,2,3,2:12:467:2,3,2:61,110,74:-3.9858,-4.89646,-42.7115,0,-35.7383,-37.5503,-1.5399,-37.2801,-32.4184,-39.3957 0|0:12:11,0,0,0:11:433:0,0,0:0,0,0:0,-3.31133,-38.9157,-3.31133,-38.9157,-38.9157,-3.31133,-38.9157,-38.9157,-38.9157 0|0:17:17,0,0,0:17:661:0,0,0:0,0,0:0,-5.11751,-57.4663,-5.11751,-57.4663,-57.4663,-5.11751,-57.4663,-57.4663,-57.4663 dDocent_Contig_7169 10 . C A 78.167 . AB=0.190476;ABP=20.4855;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=40;DPB=40;DPRA=2.21053;EPP=11.6962;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=1383;RO=36;RPL=0;RPP=11.6962;RPPR=81.1833;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:17,4:17:642:4:163:-8.7368,0,-51.7788 0/0:3:3,0:3:110:0:0:0,-0.90309,-10.2585 0/0:16:16,0:16:631:0:0:0,-4.81648,-57.1193 dDocent_Contig_7170 13 . G C 351.416 . AB=0.165354;ABP=126.545;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X;DP=127;DPB=127;DPRA=0;EPP=48.6112;EPPR=231.015;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.933333;PAO=0;PQA=0;PQR=0;PRO=0;QA=843;QR=4161;RO=105;RPL=0;RPP=48.6112;RPPR=231.015;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:33,6:33:1299:6:236:-9.87,0,-105.441 0/1:34:24,9:24:947:9:365:-23.087,0,-75.4193 0/1:54:48,6:48:1915:6:242:-5.90133,0,-156.296 dDocent_Contig_7171 11 . A G 100.679 . AB=0.207547;ABP=42.3836;AC=0;AF=0;AN=6;AO=19;CIGAR=2X2M;DP=88;DPB=88;DPRA=0;EPP=44.2683;EPPR=133.299;GTI=0;LEN=1;MEANALT=2;MQM=6;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=2352;RO=60;RPL=0;RPP=44.2683;RPPR=133.299;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:35:26,1,8:26:1016:1,8:37,48:0,-4.76265,-88.2577,-7.95971,-88.4782,-89.0962 0|0:16:9,3,4:9:362:3,4:119,24:-7.23038,0,-29.1838,-10.0634,-30.1176,-38.6973 0|0:37:25,5,7:25:974:5,7:194,42:-5.15626,0,-78.8188,-12.7001,-80.2577,-90.7044 dDocent_Contig_7172 24 . G A 61.9238 . AB=0.25;ABP=9.52472;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=23;DPB=23;DPRA=2.18182;EPP=9.52472;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=772;RO=20;RPL=0;RPP=9.52472;RPPR=46.4397;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:9,3:9:358:3:115:-7.11174,0,-28.9705 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.4033 0/0:9:9,0:9:336:0:0:0,-2.70927,-30.5807 dDocent_Contig_7173 9 . C T 98.9898 . AB=0.266667;ABP=45.5712;AC=2;AF=0.333333;AN=6;AO=25;CIGAR=1X;DP=136;DPB=136;DPRA=0;EPP=57.2971;EPPR=235.436;GTI=0;LEN=1;MEANALT=1;MQM=18.36;MQMR=42.6937;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.63964;PAO=0;PQA=0;PQR=0;PRO=0;QA=915;QR=4207;RO=111;RPL=0;RPP=57.2971;RPPR=244.044;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=110;SRP=235.436;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:46:45,1:45:1696:1:33:0,-11.9641,-120.625 0/1:33:26,7:26:974:7:265:-1.55572,0,-75.67 0/1:57:40,17:40:1537:17:617:-10.5715,0,-80.9339 dDocent_Contig_7174 40 . A G 262.887 . AB=0.314286;ABP=13.4954;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X2M;DP=35;DPB=35;DPRA=0;EPP=26.8965;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.272727;PAIREDR=0.9;PAO=0;PQA=0;PQR=0;PRO=0;QA=433;QR=770;RO=20;RPL=0;RPP=26.8965;RPPR=46.4397;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:10:6,0,4:6:241:0,4:0,158:-11.5902,-13.3964,-33.2594,0,-20.2603,-19.0562 0|1:14:8,2,4:8:292:2,4:78,159:-10.687,-6.68608,-29.9147,0,-17.4158,-22.6282 0|1:11:6,2,3:6:237:2,3:75,116:-7.72818,-3.39695,-22.302,0,-13.3795,-18.6135 dDocent_Contig_7175 50 . A T 50.658 . AB=0.1875;ABP=16.582;AC=1;AF=0.25;AN=4;AO=3;CIGAR=2X;DP=25;DPB=25;DPRA=1.77778;EPP=9.52472;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.863636;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=860;RO=22;RPL=3;RPP=9.52472;RPPR=50.7827;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:9:9,0:9:347:0:0:0,-2.70927,-31.586 0|1:16:13,3:13:513:3:121:-6.46372,0,-41.7014 .:.:.:.:.:.:.:. dDocent_Contig_7178 115 . A T 1094.84 . AB=0.671875;ABP=19.4321;AC=3;AF=0.5;AN=6;AO=43;CIGAR=1X;DP=64;DPB=64;DPRA=0;EPP=96.3836;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1461;QR=726;RO=21;RPL=0;RPP=96.3836;RPPR=48.6112;RPR=43;RUN=1;SAF=0;SAP=96.3836;SAR=43;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:9,10:9:311:10:348:-25.9364,0,-22.6058 0/1:11:3,8:3:104:8:269:-21.2272,0,-6.39176 0/1:34:9,25:9:311:25:844:-66.0367,0,-18.0902 dDocent_Contig_7180 94 . G C 1297.94 . AB=0.510204;ABP=3.05462;AC=4;AF=0.666667;AN=6;AO=50;CIGAR=1X;DP=76;DPB=76;DPRA=0;EPP=111.584;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1695;QR=888;RO=26;RPL=50;RPP=111.584;RPPR=59.4686;RPR=0;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:27:2,25:2:70:25:848:-69.9855,-1.48041,0 0/1:24:8,16:8:274:16:548:-42.4202,0,-17.769 0/1:25:16,9:16:544:9:299:-19.7072,0,-41.7573 dDocent_Contig_7181 10 . A T 324.123 . AB=0.228571;ABP=25.4075;AC=4;AF=0.666667;AN=6;AO=12;CIGAR=1X;DP=39;DPB=39;DPRA=0;EPP=29.068;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=490;QR=1062;RO=27;RPL=0;RPP=29.068;RPPR=61.6401;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:15,4:15:584:4:163:-9.33886,0,-47.1688 0/1:16:12,4:12:478:4:163:-10.2419,0,-38.5552 1/1:4:0,4:0:0:4:164:-15.1499,-1.20412,0 dDocent_Contig_7182 86 . G A 476.828 . AB=0.479167;ABP=3.19126;AC=3;AF=0.5;AN=6;AO=23;CIGAR=1X3M1X;DP=48;DPB=48;DPRA=0;EPP=52.9542;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=721;QR=808;RO=24;RPL=23;RPP=52.9542;RPPR=55.1256;RPR=0;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:14:7,6:7:241:6:181:-12.4093,0,-17.8426 0|1:20:10,10:10:329:10:314:-22.547,0,-23.9093 0|1:14:7,7:7:238:7:226:-16.4432,0,-17.5383 dDocent_Contig_7183 9 . C T 42.4346 . AB=0.0973451;ABP=321.275;AC=2;AF=0.333333;AN=6;AO=29;CIGAR=1X;DP=336;DPB=336;DPRA=0;EPP=65.983;EPPR=585.623;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.1661;NS=3;NUMALT=1;ODDS=0;PAIRED=0.965517;PAIREDR=0.543974;PAO=0;PQA=0;PQR=0;PRO=0;QA=1091;QR=11781;RO=307;RPL=0;RPP=65.983;RPPR=669.652;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=297;SRP=585.623;SRR=10;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:114:103,11:103:3933:11:394:-1.47707,0,-313.033 0/1:112:101,11:101:3879:11:426:-4.97863,0,-307.542 0/0:110:103,7:103:3969:7:271:0,-8.35715,-331.563 dDocent_Contig_7185 15 . G T 87.4527 . AB=0.235294;ABP=13.3567;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=48;DPB=48;DPRA=1.09677;EPP=11.6962;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.977273;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=1729;RO=44;RPL=0;RPP=11.6962;RPPR=98.5551;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:13,4:13:483:4:160:-9.66608,0,-38.6815 0/0:13:13,0:13:524:0:0:0,-3.91339,-47.5071 0/0:18:18,0:18:722:0:0:0,-5.41854,-65.3043 dDocent_Contig_7186 23 . G C 116.448 . AB=0.175;ABP=39.7082;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=43;DPB=43;DPRA=6.66667;EPP=18.2106;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=276;QR=1423;RO=36;RPL=0;RPP=18.2106;RPPR=81.1833;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:13,5:13:503:5:195:-12.5027,0,-40.1956 0/1:22:20,2:20:804:2:81:-1.06307,0,-66.0555 0/0:3:3,0:3:116:0:0:0,-0.90309,-10.817 dDocent_Contig_7188 68 . C T 37.8262 . AB=0.272727;ABP=7.94546;AC=1;AF=0.25;AN=4;AO=3;CIGAR=1X3M1X;DP=31;DPB=31;DPRA=0.55;EPP=9.52472;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=91;QR=1063;RO=28;RPL=3;RPP=9.52472;RPPR=63.8115;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:20:20,0:20:757:0:0:0,-6.0206,-68.4593 0|1:11:8,3:8:306:3:91:-5.18048,0,-24.5887 .:.:.:.:.:.:.:. dDocent_Contig_7189 9 . C T 2001.59 . AB=0.155251;ABP=907.334;AC=3;AF=0.5;AN=6;AO=136;CIGAR=1X;DP=876;DPB=876;DPRA=0;EPP=298.331;EPPR=1562.13;GTI=0;LEN=1;MEANALT=2.66667;MQM=58.0662;MQMR=57.124;NS=3;NUMALT=1;ODDS=0;PAIRED=0.867647;PAIREDR=0.764624;PAO=0;PQA=0;PQR=0;PRO=0;QA=5165;QR=27439;RO=718;RPL=0;RPP=298.331;RPPR=1562.13;RPR=136;RUN=1;SAF=136;SAP=298.331;SAR=0;SRF=718;SRP=1562.13;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:275:226,42:226:8602:42:1583:-59.5706,0,-687.681 0/1:372:298,63:298:11399:63:2385:-105.299,0,-896.743 0/1:229:194,31:194:7438:31:1197:-39.0057,0,-595.751 dDocent_Contig_7190 14 . G A 123.009 . AB=0.357143;ABP=5.49198;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=26;DPB=26;DPRA=2.33333;EPP=13.8677;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=761;RO=20;RPL=0;RPP=13.8677;RPPR=46.4397;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:9,0:9:324:0:0:0,-2.70927,-29.1026 0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83432 0/1:14:9,5:9:365:5:193:-13.5213,0,-29.0001 dDocent_Contig_7191 91 . A T 214.799 . AB=0.255319;ABP=27.4509;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=47;DPB=47;DPRA=0;EPP=29.068;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=414;QR=1201;RO=35;RPL=12;RPP=29.068;RPPR=79.0118;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:18,2:18:612:2:67:-0.342445,0,-49.3799 0/1:14:7,7:7:240:7:242:-17.9033,0,-17.7208 0/1:13:10,3:10:349:3:105:-5.88277,0,-27.8334 dDocent_Contig_7192 26 . G A 1254.77 . AB=0.0478142;ABP=1303.06;AC=0;AF=0;AN=6;AO=35;CIGAR=1X1M1X;DP=732;DPB=732;DPRA=0;EPP=79.0118;EPPR=1003.09;GTI=0;LEN=1;MEANALT=6;MQM=37.9429;MQMR=45.5339;NS=3;NUMALT=2;ODDS=0;PAIRED=0.0285714;PAIREDR=0.343119;PAO=0;PQA=0;PQR=0;PRO=0;QA=1386;QR=20790;RO=545;RPL=0;RPP=79.0118;RPPR=1101.2;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=523;SRP=1003.09;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:221:173,5,34:173:6564:5,34:201,1277:-45.7256,-86.2962,-527.264,0,-431.037,-432.312 0|0:283:209,24,33:209:7972:24,33:947,1272:-25.3415,-28.5716,-572.514,0,-491.493,-541.245 0|0:228:163,6,39:163:6254:6,39:238,1410:-58.1262,-88.2544,-518.842,0,-413.46,-420.657 dDocent_Contig_7193 85 . G A 448.909 . AB=0.514286;ABP=3.07234;AC=2;AF=0.5;AN=4;AO=18;CIGAR=1X;DP=35;DPB=35;DPRA=0;EPP=42.0968;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=636;QR=586;RO=17;RPL=18;RPP=42.0968;RPPR=39.9253;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=0;SRP=39.9253;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:9,10:9:302:10:354:-26.4805,0,-21.7862 0/1:16:8,8:8:284:8:282:-20.9052,0,-21.0871 ./.:.:.:.:.:.:.:. dDocent_Contig_7194 12 . C T 2879.55 . AB=0.210884;ABP=109.737;AC=1;AF=0.166667;AN=6;AO=31;CIGAR=1X2M1X2M1X3M;DP=147;DPB=147;DPRA=0;EPP=70.3259;EPPR=42.0968;GTI=0;LEN=1;MEANALT=5.33333;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1223;QR=708;RO=18;RPL=0;RPP=70.3259;RPPR=42.0968;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:58:0,0,7,27,22:0:0:0,7,27,22:0,272,1071,881:-160.758,-160.758,-160.758,-138.41,-138.41,-136.303,-72.5948,-72.5948,-50.2472,-64.467,-88.1778,-88.1778,-65.8296,0,-81.5552 0|0:41:10,3,6,18,3:10:388:3,6,18,3:120,238,704,119:-54.8688,-47.9931,-78.9624,-38.2865,-60.2727,-68.3526,0,-21.9839,-12.277,-26.4518,-48.0835,-70.0698,-60.3631,-22.0744,-79.0527 1|0:48:8,2,18,14,4:8:320:2,18,14,4:77,713,560,161:-76.0443,-72.1316,-97.8898,-19.7709,-39.811,-40.7132,-32.3215,-52.3617,0,-54.4682,-65.183,-85.2225,-32.862,-45.4128,-90.3394 dDocent_Contig_7195 53 . A G 392.075 . AB=0.288136;ABP=26.0132;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=59;DPB=59;DPRA=0;EPP=39.9253;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=662;QR=1660;RO=42;RPL=17;RPP=39.9253;RPPR=94.2121;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:5,5:5:196:5:190:-14.4537,0,-15.0019 0/1:27:23,4:23:909:4:156:-6.28931,0,-73.9871 0/1:22:14,8:14:555:8:316:-22.1811,0,-43.669 dDocent_Contig_7196 209 . N G 113.747 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.29832;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:122:-11.3725,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_7197 20 . G A 1049.29 . AB=0.105534;ABP=1053.17;AC=3;AF=0.5;AN=6;AO=82;CIGAR=1X1M;DP=777;DPB=777;DPRA=0;EPP=181.071;EPPR=1112.78;GTI=0;LEN=1;MEANALT=5.66667;MQM=34.3049;MQMR=49.2161;NS=3;NUMALT=3;ODDS=0;PAIRED=0.304878;PAIREDR=0.367113;PAO=0;PQA=0;PQR=0;PRO=0;QA=2541;QR=20512;RO=523;RPL=0;RPP=181.071;RPPR=1138.69;RPR=82;RUN=1;SAF=82;SAP=181.071;SAR=0;SRF=520;SRP=1112.78;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:235:152,37,13,31:152:5936:37,13,31:1483,496,1128:-42.4395,-12.8935,-458.187,-48.8239,-429.963,-501.378,0,-381.153,-417.116,-447.148 0|1:233:164,36,10,15:164:6446:36,10,15:1405,387,442:-34.441,0,-447.521,-54.544,-429.1,-509.906,-52.4114,-426.955,-481.511,-506.254 0|1:309:207,41,18,36:207:8130:41,18,36:1645,682,971:-31.765,0,-595.387,-41.1158,-554.78,-643.433,-26.7071,-540.347,-581.468,-623.579 dDocent_Contig_7198 16 . T G 343.214 . AB=0.27451;ABP=25.534;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X3M;DP=101;DPB=101;DPRA=0;EPP=39.9253;EPPR=14.8328;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.876543;PAO=0;PQA=0;PQR=0;PRO=0;QA=688;QR=2995;RO=81;RPL=0;RPP=39.9253;RPPR=178.9;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=51;SRP=14.8328;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:50:46,0,3:46:1677:0,3:0,121:0,-13.8474,-150.776,-3.87829,-140.8,-139.896 0|1:31:23,0,8:23:885:0,8:0,322:-20.0159,-26.9396,-99.5817,0,-73.0396,-70.6314 0|1:20:12,2,6:12:433:2,6:76,245:-16.6242,-14.0118,-48.7114,0,-29.0822,-33.5106 dDocent_Contig_7199 17 . G A 271.893 . AB=0.4;ABP=5.18177;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=40;DPB=40;DPRA=0.833333;EPP=24.725;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=403;QR=1166;RO=30;RPL=0;RPP=24.725;RPPR=68.1545;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:4,6:4:152:6:239:-18.8736,0,-11.0378 0/0:15:15,0:15:598:0:0:0,-4.51545,-54.1601 0/1:15:11,4:11:416:4:164:-10.6344,0,-33.2574 dDocent_Contig_7200 119 . T A 34.968 . AB=0.666667;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=15;DPB=15;DPRA=0.5;EPP=7.35324;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=29;MQMR=60;NS=3;NUMALT=1;ODDS=4.33681e-19;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=444;RO=13;RPL=0;RPP=7.35324;RPPR=31.2394;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=31.2394;SRR=13;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:3:1,2:1:35:2:70:-4.40817,0,-2.59554 0/0:5:5,0:5:171:0:0:0,-1.50515,-15.7266 0/0:7:7,0:7:238:0:0:0,-2.10721,-21.7522 dDocent_Contig_7201 92 . A C 161.275 . AB=0.1875;ABP=57.2971;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=64;DPB=64;DPRA=0;EPP=29.068;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.833333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=408;QR=1771;RO=52;RPL=12;RPP=29.068;RPPR=115.927;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:18,3:18:594:3:94:-2.44928,0,-47.449 0/1:21:14,7:14:484:7:244:-15.9784,0,-37.5681 0/1:22:20,2:20:693:2:70:-0.0247359,0,-56.0708 dDocent_Contig_7203 77 . C A 30.4166 . AB=0.148148;ABP=32.0437;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=45;DPB=45;DPRA=3;EPP=11.6962;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=134;QR=1416;RO=41;RPL=4;RPP=11.6962;RPPR=92.0407;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:240:0:0:0,-2.10721,-21.9352 0/0:11:11,0:11:382:0:0:0,-3.31133,-34.7143 0/1:27:23,4:23:794:4:134:-4.26307,0,-63.6503 dDocent_Contig_7205 119 . A G 108.299 . AB=0.388889;ABP=4.9405;AC=2;AF=0.5;AN=4;AO=7;CIGAR=1X;DP=18;DPB=18;DPRA=0;EPP=18.2106;EPPR=26.8965;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=364;RO=11;RPL=0;RPP=18.2106;RPPR=26.8965;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=26.8965;SRR=11;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:6,4:6:199:4:126:-8.64208,0,-15.2263 ./.:.:.:.:.:.:.:. 0/1:8:5,3:5:165:3:76:-4.68253,0,-12.7674 dDocent_Contig_7206 1 . N G 72.1913 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=4.60517;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:76:-7.21481,-0.60206,0 dDocent_Contig_7207 133 . C A 228.425 . AB=0.342105;ABP=11.239;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=52;DPB=52;DPRA=1.35714;EPP=31.2394;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=400;QR=1305;RO=39;RPL=0;RPP=31.2394;RPPR=87.6977;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=87.6977;SRR=39;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:452:0:0:0,-4.21442,-40.9896 0/1:32:23,9:23:787:9:281:-15.9624,0,-61.5143 0/1:6:2,4:2:66:4:119:-9.19871,0,-4.462 dDocent_Contig_7208 9 . C G 3077.75 . AB=0.0943396;ABP=78.766;AC=0;AF=0;AN=6;AO=5;CIGAR=2X;DP=144;DPB=144;DPRA=0;EPP=13.8677;EPPR=87.6977;GTI=0;LEN=1;MEANALT=2;MQM=59.4;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.8;PAIREDR=0.974359;PAO=0;PQA=0;PQR=0;PRO=0;QA=191;QR=1529;RO=39;RPL=0;RPP=13.8677;RPPR=87.6977;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:38:12,0,26:12:471:0,26:0,1035:-80.6711,-84.2835,-123.021,0,-39.1295,-31.3027 0|0:53:20,0,33:20:779:0,33:0,1310:-96.9358,-102.956,-166.984,0,-64.4131,-54.4791 0|0:53:7,5,41:7:279:5,41:191,1650:-133.885,-120.328,-141.799,0,-7.3273,-10.6438 dDocent_Contig_7209 187 . C T 98.8422 . AB=0.363636;ABP=4.78696;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=21;DPB=21;DPRA=2.2;EPP=11.6962;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=688;RO=17;RPL=4;RPP=11.6962;RPPR=39.9253;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=39.9253;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:324:0:0:0,-2.40824,-29.5294 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 0/1:11:7,4:7:283:4:156:-11.1046,0,-22.532 dDocent_Contig_7210 43 . A G 214.82 . AB=0.333333;ABP=8.80089;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=61;DPB=61;DPRA=0;EPP=26.8965;EPPR=3.70517;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=437;QR=2010;RO=50;RPL=0;RPP=26.8965;RPPR=3.70517;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:16,8:16:639:8:325:-22.3949,0,-50.62 0/0:26:24,2:24:965:2:82:0,-0.0471021,-79.3711 0/0:11:10,1:10:406:1:30:0,-0.311763,-33.9008 dDocent_Contig_7211 11 . A G 433.514 . AB=0.208333;ABP=20.744;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1M3X5M1X4M12D4M;DP=57;DPB=43.7;DPRA=0;EPP=13.8677;EPPR=42.0968;GTI=0;LEN=1;MEANALT=4.5;MQM=35.6;MQMR=60;NS=3;NUMALT=7;ODDS=0;PAIRED=0;PAIREDR=1;PAO=1.71429;PQA=0;PQR=0;PRO=1.71429;QA=166;QR=670;RO=18;RPL=0;RPP=13.8677;RPPR=42.0968;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:13:2,4,0,0,0,0,2,4:2:66:4,0,0,0,0,2,4:132,0,0,0,0,42,147:-16.0241,-6.72293,-10.8614,-16.6262,-12.0655,-21.9655,-16.6262,-12.0655,-21.9655,-21.9655,-16.6262,-12.0655,-21.9655,-21.9655,-21.9655,-16.6262,-12.0655,-21.9655,-21.9655,-21.9655,-21.9655,-14.0135,-9.46117,-19.3489,-19.3489,-19.3489,-19.3489,-18.7468,-4.574,0,-9.92404,-9.92404,-9.92404,-9.92404,-7.31224,-8.71992 0|0:11:5,1,1,0,1,2,0,0:5:189:1,1,0,1,2,0,0:34,30,0,36,66,0,0:-3.29592,-2.19443,-17.4312,-2.67692,-15.6107,-17.9084,-4.80107,-17.7322,-18.2095,-20.3317,-2.12507,-15.0642,-15.5421,-17.6636,-17.3626,0,-12.9437,-13.4222,-15.5421,-12.8749,-14.94,-4.80107,-17.7322,-18.2095,-20.3317,-17.6636,-15.5421,-20.3317,-4.80107,-17.7322,-18.2095,-20.3317,-17.6636,-15.5421,-20.3317,-20.3317 0|0:33:11,0,16,3,3,0,0,0:11:415:0,16,3,3,0,0,0:0,447,90,104,0,0,0:-27.7439,-31.0553,-65.1016,0,-34.0604,-29.2439,-24.6693,-58.72,-27.6925,-57.8169,-23.2469,-57.3006,-26.2672,-50.919,-56.3975,-31.0553,-65.1016,-34.0604,-58.72,-57.3006,-65.1016,-31.0553,-65.1016,-34.0604,-58.72,-57.3006,-65.1016,-65.1016,-31.0553,-65.1016,-34.0604,-58.72,-57.3006,-65.1016,-65.1016,-65.1016 dDocent_Contig_7212 29 . G A 31.6164 . AB=0.333333;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=28;DPB=28;DPRA=1.83333;EPP=9.52472;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=99;QR=980;RO=25;RPL=0;RPP=9.52472;RPPR=57.2971;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:4,2:4:161:2:62:-4.08163,0,-13.0693 0/0:16:15,1:15:590:1:37:0,-1.11865,-49.7389 0/0:6:6,0:6:229:0:0:0,-1.80618,-20.9701 dDocent_Contig_7213 17 . G A 1228.04 . AB=0.681818;ABP=15.6443;AC=4;AF=0.666667;AN=6;AO=39;CIGAR=1X;DP=53;DPB=53;DPRA=0;EPP=87.6977;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.923077;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1526;QR=556;RO=14;RPL=0;RPP=87.6977;RPPR=33.4109;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:5,22:5:203:22:851:-68.7646,0,-10.5252 0/1:17:9,8:9:353:8:310:-23.1427,0,-27.0104 1/1:9:0,9:0:0:9:365:-33.2151,-2.70927,0 dDocent_Contig_7214 29 . A G 286.308 . AB=0.45;ABP=3.44459;AC=4;AF=0.666667;AN=6;AO=10;CIGAR=1X;DP=21;DPB=21;DPRA=0;EPP=24.725;EPPR=26.8965;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=398;QR=396;RO=11;RPL=0;RPP=24.725;RPPR=26.8965;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=11;SRP=26.8965;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0 0/1:6:5,1:5:179:1:41:-2.28839,0,-14.6534 0/1:14:6,8:6:217:8:321:-25.0419,0,-15.6622 dDocent_Contig_7215 28 . G A 57.5149 . AB=0.214286;ABP=12.937;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=29;DPB=29;DPRA=1.86667;EPP=9.52472;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=1025;RO=26;RPL=0;RPP=9.52472;RPPR=59.4686;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:264:0:0:0,-2.10721,-24.1169 0/0:8:8,0:8:319:0:0:0,-2.40824,-29.0765 0/1:14:11,3:11:442:3:120:-6.97327,0,-35.9203 dDocent_Contig_7216 9 . A G 131.633 . AB=0.241379;ABP=19.8579;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=34;DPB=34;DPRA=2.9;EPP=18.2106;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.857143;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=258;QR=1036;RO=27;RPL=0;RPP=18.2106;RPPR=61.6401;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:9,1:9:341:1:39:-0.886264,0,-28.0332 0/1:19:13,6:13:501:6:219:-14.3426,0,-39.7184 0/0:5:5,0:5:194:0:0:0,-1.50515,-17.8328 dDocent_Contig_7217 9 . A T 196.29 . AB=0.238095;ABP=28.0339;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=75;DPB=75;DPRA=0;EPP=26.8965;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=404;QR=2447;RO=64;RPL=0;RPP=26.8965;RPPR=141.985;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:22,9:22:835:9:328:-20.5281,0,-66.1413 0/0:33:32,1:32:1224:1:37:0,-6.23616,-106.758 0/1:11:10,1:10:388:1:39:-0.585235,0,-31.9667 dDocent_Contig_7218 12 . A G 118.296 . AB=0.25;ABP=13.8677;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=29;DPB=29;DPRA=1.11111;EPP=13.8677;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=951;RO=24;RPL=0;RPP=13.8677;RPPR=55.1256;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:12,1:12:468:1:41:-0.181177,0,-38.554 0/0:9:9,0:9:362:0:0:0,-2.70927,-32.9442 0/1:7:3,4:3:121:4:164:-13.0427,0,-9.17299 dDocent_Contig_7221 30 . G A 65.6354 . AB=0.272727;ABP=7.94546;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X1M2X;DP=24;DPB=24;DPRA=1.69231;EPP=9.52472;EPPR=46.4397;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.8;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=790;RO=20;RPL=0;RPP=9.52472;RPPR=46.4397;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:7:7,0:7:272:0:0:0,-2.10721,-24.844 0|1:11:7,3:7:276:3:120:-7.78526,0,-21.8088 0|0:6:6,0:6:242:0:0:0,-1.80618,-22.1573 dDocent_Contig_7222 1 . N G 63.3266 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=23;MQMR=0;NS=1;NUMALT=1;ODDS=5.29832;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=100;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:100:-6.3305,-0.90309,0 dDocent_Contig_7223 11 . G A 30.5918 . AB=0.181818;ABP=12.6832;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=26;DPB=26;DPRA=1.46667;EPP=7.35324;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.958333;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=961;RO=24;RPL=0;RPP=7.35324;RPPR=55.1256;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:203:0:0:0,-1.50515,-18.6531 0/0:10:10,0:10:391:0:0:0,-3.0103,-35.545 0/1:11:9,2:9:367:2:80:-4.28046,0,-30.0839 dDocent_Contig_7224 10 . T C 419.029 . AB=0.203883;ABP=81.4574;AC=2;AF=0.333333;AN=6;AO=23;CIGAR=1X;DP=142;DPB=142;DPRA=0;EPP=52.9542;EPPR=261.416;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=907;QR=4726;RO=119;RPL=0;RPP=52.9542;RPPR=261.416;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=119;SRP=261.416;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:38,5:38:1505:5:198:-5.2533,0,-122.75 0/0:39:37,2:37:1469:2:79:0,-4.24254,-124.969 0/1:60:44,16:44:1752:16:630:-38.9683,0,-139.838 dDocent_Contig_7225 11 . G T 144.489 . AB=0.228571;ABP=25.4075;AC=3;AF=0.5;AN=6;AO=8;CIGAR=2X1M1X;DP=35;DPB=35;DPRA=0;EPP=20.3821;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=305;QR=1021;RO=27;RPL=0;RPP=20.3821;RPPR=61.6401;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:21:18,3:18:663:3:113:-4.21734,0,-53.6716 0|1:6:2,4:2:77:4:154:-12.4274,0,-5.50265 0|1:8:7,1:7:281:1:38:-1.38903,0,-23.2545 dDocent_Contig_7226 158 . G A 132.449 . AB=0.0869565;ABP=37.093;AC=0;AF=0;AN=6;AO=2;CIGAR=1M1I4M1X4M1X1M1X3M;DP=64;DPB=64.8125;DPRA=0;EPP=7.35324;EPPR=85.5263;GTI=0;LEN=1;MEANALT=4;MQM=40;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=34;QR=1214;RO=38;RPL=0;RPP=7.35324;RPPR=85.5263;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=85.5263;SRR=38;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:13:2,5,0,5:2:63:5,0,5:65,0,154:-11.848,-9.48369,-13.0585,-12.4501,-14.5636,-17.5363,0,-2.15876,-5.12303,-3.61788 0|0:23:16,1,2,3:16:503:1,2,3:7,34,90:-2.46065,-7.20235,-47.4175,-4.83143,-45.2763,-44.7612,0,-40.5214,-38.166,-39.7054 0|0:28:20,5,0,3:20:648:5,0,3:44,0,105:-2.63062,-7.55381,-58.3112,-8.65122,-59.8163,-61.0464,0,-51.2697,-52.4947,-51.5917 dDocent_Contig_7227 21 . G A 100.986 . AB=0.162162;ABP=39.6906;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=147;DPB=147;DPRA=1.38462;EPP=18.2106;EPPR=307.016;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=280;QR=5538;RO=140;RPL=0;RPP=18.2106;RPPR=307.016;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=140;SRP=307.016;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:31,6:31:1219:6:242:-11.0194,0,-98.8451 0/0:39:39,0:39:1549:0:0:0,-11.7402,-139.654 0/0:71:70,1:70:2770:1:38:0,-17.5759,-245.619 dDocent_Contig_7228 14 . T C 906.323 . AB=0.343137;ABP=24.8102;AC=3;AF=0.5;AN=6;AO=35;CIGAR=1X;DP=102;DPB=102;DPRA=0;EPP=79.0118;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1378;QR=2168;RO=67;RPL=0;RPP=79.0118;RPPR=148.499;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:17,13:17:529:13:516:-37.7563,0,-38.8767 0/1:43:26,17:26:819:17:675:-48.1344,0,-61.0581 0/1:29:24,5:24:820:5:187:-8.45825,0,-65.3797 dDocent_Contig_7229 28 . T C 1355.81 . AB=0.429825;ABP=7.88659;AC=3;AF=0.5;AN=6;AO=49;CIGAR=1X;DP=114;DPB=114;DPRA=0;EPP=109.412;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1918;QR=2500;RO=65;RPL=0;RPP=109.412;RPPR=144.156;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:15,24:15:563:24:924:-71.7181,0,-39.2593 0/1:53:45,8:45:1741:8:315:-12.7611,0,-140.976 0/1:22:5,17:5:196:17:679:-54.8184,0,-11.3922 dDocent_Contig_7230 55 . A C 103.996 . AB=0.171429;ABP=35.8306;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=90;DPB=90;DPRA=2.5;EPP=20.3821;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=324;QR=3236;RO=82;RPL=8;RPP=20.3821;RPPR=181.071;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:585:0:0:0,-4.51545,-52.9837 0/1:35:29,6:29:1125:6:242:-11.6215,0,-90.9905 0/0:40:38,2:38:1526:2:82:0,-4.26152,-129.801 dDocent_Contig_7231 74 . C T 67.7021 . AB=0.285714;ABP=8.59409;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=30;DPB=30;DPRA=1.75;EPP=11.6962;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=132;QR=926;RO=26;RPL=4;RPP=11.6962;RPPR=59.4686;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3815 0/0:6:6,0:6:214:0:0:0,-1.80618,-19.6078 0/1:14:10,4:10:356:4:132:-7.99197,0,-28.167 dDocent_Contig_7232 51 . T G 168.143 . AB=0.428571;ABP=3.63072;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=22;DPB=22;DPRA=3.5;EPP=16.0391;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=600;RO=15;RPL=6;RPP=16.0391;RPPR=35.5824;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:236:0:0:0,-1.80618,-21.6113 0/0:2:1,0:1:39:0:0:0,-0.30103,-3.50195 0/1:14:8,6:8:325:6:243:-18.0332,0,-25.4052 dDocent_Contig_7233 11 . C A 700.298 . AB=0.113043;ABP=302.145;AC=0;AF=0;AN=6;AO=32;CIGAR=1X4M;DP=319;DPB=319;DPRA=0;EPP=72.4974;EPPR=459.06;GTI=0;LEN=1;MEANALT=5.66667;MQM=56.25;MQMR=57.9206;NS=3;NUMALT=3;ODDS=5.55112e-17;PAIRED=1;PAIREDR=0.901869;PAO=0;PQA=0;PQR=0;PRO=0;QA=1217;QR=8321;RO=214;RPL=0;RPP=72.4974;RPPR=467.705;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=213;SRP=459.06;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:89:71,4,6,5:71:2766:4,6,5:154,242,188:0,-8.72164,-234.764,-1.40387,-216.019,-226.857,-5.96703,-220.569,-213.264,-231.708 0|0:150:90,9,18,27:90:3485:9,18,27:357,656,1053:-51.0132,-48.7111,-317.875,-25.3478,-267.829,-291.8,0,-242.48,-219.115,-263.742 0|0:80:53,1,8,12:53:2070:1,8,12:40,319,487:-21.3351,-33.9929,-203.809,-11.0012,-177.837,-178.724,0,-166.839,-143.861,-166.522 dDocent_Contig_7234 9 . A T 346.696 . AB=0.340909;ABP=12.6832;AC=2;AF=0.5;AN=4;AO=15;CIGAR=1X;DP=44;DPB=44;DPRA=0;EPP=35.5824;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=0.133333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=547;QR=1121;RO=29;RPL=0;RPP=35.5824;RPPR=65.983;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:11,13:11:423:13:473:-35.6864,0,-31.199 0/1:20:18,2:18:698:2:74:-1.00528,0,-57.1336 ./.:.:.:.:.:.:.:. dDocent_Contig_7235 43 . T C 384.869 . AB=0.56;ABP=3.79203;AC=2;AF=0.5;AN=4;AO=14;CIGAR=1X;DP=25;DPB=25;DPRA=0;EPP=33.4109;EPPR=26.8965;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=531;QR=433;RO=11;RPL=0;RPP=33.4109;RPPR=26.8965;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=11;SRP=26.8965;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:15:6,9:6:235:9:344:-26.8003,0,-17.0063 0/1:10:5,5:5:198:5:187:-14.1815,0,-15.1871 dDocent_Contig_7237 7 . A G 60.9679 . AB=0.375;ABP=4.09604;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=2X;DP=17;DPB=17;DPRA=1.77778;EPP=9.52472;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=101;QR=533;RO=14;RPL=0;RPP=9.52472;RPPR=33.4109;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:8:5,3:5:192:3:101:-7.01467,0,-15.2419 0|0:1:1,0:1:36:0:0:0,-0.30103,-3.59827 0|0:8:8,0:8:305:0:0:0,-2.40824,-27.8092 dDocent_Contig_7238 10 . T C 157.279 . AB=0.333333;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=86;DPB=86;DPRA=0.575;EPP=20.3821;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.7051;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.961538;PAO=0;PQA=0;PQR=0;PRO=0;QA=321;QR=3014;RO=78;RPL=0;RPP=20.3821;RPPR=172.385;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:12,6:12:456:6:241:-16.6479,0,-35.9641 0/0:28:26,2:26:1011:2:80:0,-0.837265,-83.6934 0/0:40:40,0:40:1547:0:0:0,-12.0412,-139.429 dDocent_Contig_7240 67 . T C 122.761 . AB=0.333333;ABP=6.62942;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=37;DPB=37;DPRA=1.36364;EPP=13.8677;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=196;QR=1239;RO=32;RPL=5;RPP=13.8677;RPPR=72.4974;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:684:0:0:0,-5.41854,-61.8821 0/0:4:4,0:4:159:0:0:0,-1.20412,-14.692 0/1:15:10,5:10:396:5:196:-13.4976,0,-31.4841 dDocent_Contig_7241 13 . A T 219.182 . AB=0.25641;ABP=23.1103;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X1M1X;DP=67;DPB=67;DPRA=0;EPP=29.068;EPPR=120.27;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=456;QR=2134;RO=54;RPL=0;RPP=29.068;RPPR=120.27;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:6,8:6:233:8:300:-22.8279,0,-16.81 0|0:28:26,2:26:1026:2:77:0,-1.1197,-85.328 0|1:24:22,2:22:875:2:79:-0.272912,0,-71.8371 dDocent_Contig_7242 151 . C T 771.498 . AB=0.474576;ABP=3.34154;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X;DP=59;DPB=59;DPRA=0;EPP=63.8115;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1084;QR=1207;RO=31;RPL=0;RPP=63.8115;RPPR=70.3259;RPR=28;RUN=1;SAF=0;SAP=63.8115;SAR=28;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:7,7:7:264:7:279:-21.2661,0,-19.9019 0/1:38:20,18:20:779:18:687:-50.7054,0,-58.9815 0/1:7:4,3:4:164:3:118:-8.89499,0,-13.0427 dDocent_Contig_7243 7 . A G 126.921 . AB=0.241379;ABP=19.8579;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X3M1X3M1X3M1X;DP=35;DPB=35;DPRA=2.41667;EPP=18.2106;EPPR=57.2971;GTI=0;LEN=1;MEANALT=2;MQM=38;MQMR=60;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=268;QR=974;RO=25;RPL=0;RPP=18.2106;RPPR=57.2971;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:6:6,0,0:6:228:0,0:0,0:0,-1.80618,-20.8823,-1.80618,-20.8823,-20.8823 1|0:8:1,4,2:1:40:4,2:151,79:-11.3309,-0.311041,-2.43737,-7.96373,0,-10.6673 0|1:21:18,3,0:18:706:3,0:117,0:-3.60224,0,-57.5499,-9.02078,-58.453,-67.114 dDocent_Contig_7244 8 . A G 264.218 . AB=0.240741;ABP=34.5369;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X1M1X;DP=71;DPB=71;DPRA=0;EPP=33.4109;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=59.5;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=531;QR=2181;RO=57;RPL=0;RPP=33.4109;RPPR=126.784;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:36:27,9:27:1021:9:341:-20.2012,0,-81.3623 0|1:18:14,4:14:539:4:151:-8.539,0,-43.4369 0|0:17:16,1:16:621:1:39:0,-1.22095,-52.3335 dDocent_Contig_7245 24 . A C 32.6542 . AB=0.2;ABP=10.8276;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1M1D1X;DP=31;DPB=30.3333;DPRA=0.952381;EPP=7.35324;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=1080;RO=29;RPL=0;RPP=7.35324;RPPR=65.983;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:6:6,0:6:231:0:0:0,-1.80618,-21.158 0|1:10:8,2:8:297:2:79:-4.48694,0,-24.0726 0|0:15:15,0:15:552:0:0:0,-4.51545,-50.0159 dDocent_Contig_7247 89 . C A 214.646 . AB=0.3125;ABP=12.7819;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=96;DPB=96;DPRA=1;EPP=24.725;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=352;QR=2990;RO=86;RPL=10;RPP=24.725;RPPR=189.757;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:22,10:22:765:10:352:-22.3854,0,-59.5388 0/0:44:44,0:44:1527:0:0:0,-13.2453,-137.725 0/0:20:20,0:20:698:0:0:0,-6.0206,-63.1446 dDocent_Contig_7248 15 . G C 32.4676 . AB=0.181818;ABP=12.6832;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X2M1X;DP=31;DPB=31;DPRA=1.1;EPP=7.35324;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=1103;RO=29;RPL=0;RPP=7.35324;RPPR=65.983;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:11:11,0:11:413:0:0:0,-3.31133,-37.5189 0|0:9:9,0:9:342:0:0:0,-2.70927,-31.1364 0|1:11:9,2:9:348:2:82:-4.46835,0,-28.369 dDocent_Contig_7249 209 . N G 113.747 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.29832;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:122:-11.3725,-0.90309,0 dDocent_Contig_7250 73 . C T 41.2675 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=30;DPB=30;DPRA=0.307692;EPP=7.35324;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=927;RO=28;RPL=2;RPP=7.35324;RPPR=63.8115;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:366:0:0:0,-3.31133,-33.2613 0/1:4:2,2:2:68:2:69:-5.34854,0,-5.25381 0/0:15:15,0:15:493:0:0:0,-4.51545,-44.6852 dDocent_Contig_7251 26 . C G 236.034 . AB=0.25;ABP=26.8965;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=56;DPB=56;DPRA=1.83333;EPP=26.8965;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=427;QR=1700;RO=45;RPL=0;RPP=26.8965;RPPR=100.727;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:24,5:24:950:5:194:-9.1016,0,-77.0769 0/0:12:12,0:12:466:0:0:0,-3.61236,-42.281 0/1:15:9,6:9:284:6:233:-16.8205,0,-21.3397 dDocent_Contig_7252 13 . T C 115.2 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=47;DPB=47;DPRA=2.4375;EPP=16.0391;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=1549;RO=41;RPL=0;RPP=16.0391;RPPR=92.0407;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:29,2:29:1106:2:81:0,-1.6462,-92.1499 0/1:8:4,4:4:148:4:164:-12.7417,0,-11.2706 0/0:8:8,0:8:295:0:0:0,-2.40824,-26.8942 dDocent_Contig_7254 112 . G T 324.483 . 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A G 591.904 . AB=0.64;ABP=7.26639;AC=6;AF=1;AN=6;AO=16;CIGAR=1X7I1M1X3M;DP=25;DPB=54.1667;DPRA=0;EPP=37.7539;EPPR=0;GTI=0;LEN=1;MEANALT=2.33333;MQM=40.4375;MQMR=0;NS=3;NUMALT=3;ODDS=3.46945e-18;PAIRED=0.1875;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=518;QR=0;RO=0;RPL=0;RPP=37.7539;RPPR=0;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:13:0,0,4,8:0:0:0,4,8:0,140,260:-30.7851,-30.7851,-30.7851,-19.8588,-19.8588,-18.6547,-10.9013,-10.9013,0,-8.49304 1|1:2:0,0,1,1:0:0:0,1,1:0,34,17:-3.90042,-3.90042,-3.90042,-1.10229,-1.10229,-0.801264,-3.0351,-3.0351,0,-2.73407 1|1:10:0,3,0,7:0:0:3,0,7:108,0,241:-27.5827,-18.9722,-18.0691,-27.5827,-18.9722,-27.5827,-8.95573,0,-8.95573,-6.84852 dDocent_Contig_7256 68 . A G 257.109 . AB=0.297297;ABP=16.2152;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=54;DPB=54;DPRA=0;EPP=29.068;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=468;QR=1598;RO=42;RPL=12;RPP=29.068;RPPR=94.2121;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:13,7:13:520:7:275:-19.097,0,-41.1272 0/1:17:13,4:13:481:4:152:-8.93212,0,-38.5125 0/0:17:16,1:16:597:1:41:0,-1.02294,-49.969 dDocent_Contig_7257 16 . T G 536.043 . AB=0.362069;ABP=12.5947;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=48.6112;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=819;QR=1490;RO=37;RPL=0;RPP=48.6112;RPPR=83.3548;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:12,15:12:480:15:595:-45.7569,0,-35.4226 0/1:7:4,3:4:159:3:118:-8.89551,0,-12.5851 0/1:24:21,3:21:851:3:106:-2.66079,0,-69.6766 dDocent_Contig_7258 10 . G T 34.2954 . AB=0.2;ABP=14.7363;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=26;DPB=26;DPRA=0.681818;EPP=9.52472;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=106;QR=907;RO=23;RPL=0;RPP=9.52472;RPPR=52.9542;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:440:0:0:0,-3.31133,-39.9549 0/1:11:9,2:9:350:2:68:-3.1433,0,-28.5461 0/1:4:3,1:3:117:1:38:-2.59315,0,-9.70517 dDocent_Contig_7259 32 . C T 97.6607 . AB=0.307692;ABP=7.18621;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=36;DPB=36;DPRA=1.13043;EPP=11.6962;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=1266;RO=32;RPL=0;RPP=11.6962;RPPR=72.4974;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:9,4:9:336:4:158:-10.6869,0,-26.6748 0/0:11:11,0:11:443:0:0:0,-3.31133,-40.2259 0/0:12:12,0:12:487:0:0:0,-3.61236,-44.1811 dDocent_Contig_7260 17 . G A 1687.33 . AB=0.104444;ABP=614.574;AC=3;AF=0.5;AN=6;AO=47;CIGAR=1X1M;DP=450;DPB=450;DPRA=0;EPP=105.07;EPPR=715.253;GTI=0;LEN=1;MEANALT=3.66667;MQM=60;MQMR=59.7957;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.996951;PAO=0;PQA=0;PQR=0;PRO=0;QA=1868;QR=12785;RO=328;RPL=0;RPP=105.07;RPPR=715.253;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=328;SRP=715.253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:155:109,30,13:109:4264:30,13:1178,523:-64.0847,0,-341.558,-53.7878,-307.486,-400.454 0|1:125:91,4,25:91:3492:4,25:162,1002:-55.1621,-69.1968,-354.576,0,-273.224,-279.057 0|1:170:128,28,9:128:5029:28,9:1114,343:-53.2027,0,-403.398,-63.6081,-383.698,-472.712 dDocent_Contig_7262 98 . N A 189.057 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=194;QR=0;RO=0;RPL=6;RPP=16.0391;RPPR=0;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:54:-5.12867,-0.60206,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1/1:3:0,3:0:0:3:105:-9.79616,-0.90309,0 dDocent_Contig_7263 90 . G A 537.26 . AB=0.677419;ABP=11.486;AC=2;AF=0.333333;AN=6;AO=21;CIGAR=1X;DP=49;DPB=49;DPRA=0.861111;EPP=48.6112;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=719;QR=945;RO=28;RPL=21;RPP=48.6112;RPPR=63.8115;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:614:0:0:0,-5.41854,-55.5821 0/1:23:8,15:8:261:15:509:-39.2103,0,-16.8845 0/1:8:2,6:2:70:6:210:-16.8342,0,-4.23916 dDocent_Contig_7264 58 . A G 100.747 . AB=0.193548;ABP=28.2974;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=39;DPB=39;DPRA=1.9375;EPP=16.0391;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=233;QR=1289;RO=33;RPL=6;RPP=16.0391;RPPR=74.6689;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:322:0:0:0,-2.40824,-29.3483 0/1:20:17,3:17:658:3:123:-5.44419,0,-53.5242 0/1:11:8,3:8:309:3:110:-6.94922,0,-24.8566 dDocent_Contig_7265 8 . A G 82.8739 . AB=0.129032;ABP=77.1206;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=109;DPB=109;DPRA=2.6383;EPP=20.3821;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=309;QR=3835;RO=101;RPL=0;RPP=20.3821;RPPR=222.329;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:455:0:0:0,-3.61236,-41.2972 0/0:35:35,0:35:1322:0:0:0,-10.536,-119.267 0/1:62:54,8:54:2058:8:309:-9.50924,0,-166.791 dDocent_Contig_7266 9 . A G 605.755 . AB=0.0810811;ABP=59.4099;AC=0;AF=0;AN=6;AO=3;CIGAR=2X1M1X;DP=57;DPB=57;DPRA=0;EPP=9.52472;EPPR=61.6401;GTI=0;LEN=1;MEANALT=2.5;MQM=58.6667;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=1060;RO=27;RPL=0;RPP=9.52472;RPPR=61.6401;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:20:11,0,0,9:11:433:0,0,9:0,0,345:-25.3862,-28.6975,-64.3247,-28.6975,-64.3247,-64.3247,0,-36.0147,-36.0147,-33.3055 0|0:12:3,0,1,8:3:117:0,1,8:0,39,300:-23.6543,-24.5574,-34.1782,-21.3545,-30.9761,-30.6751,0,-9.61785,-6.41673,-7.20961 0|0:25:13,4,2,6:13:510:4,2,6:146,77,234:-15.2517,-7.24449,-47.9865,-12.8417,-42.8688,-54.1903,0,-30.0347,-35.635,-40.1511 dDocent_Contig_7267 10 . G C 677.646 . AB=0.252033;ABP=68.7018;AC=3;AF=0.5;AN=6;AO=31;CIGAR=1X;DP=123;DPB=123;DPRA=0;EPP=70.3259;EPPR=202.786;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8696;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.923913;PAO=0;PQA=0;PQR=0;PRO=0;QA=1194;QR=3563;RO=92;RPL=0;RPP=70.3259;RPPR=202.786;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:35,15:35:1368:15:575:-37.0326,0,-108.332 0/1:29:22,7:22:861:7:269:-15.8355,0,-69.0458 0/1:44:35,9:35:1334:9:350:-18.6131,0,-107.078 dDocent_Contig_7268 14 . A T 223.927 . AB=0.162791;ABP=87.9502;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=86;DPB=86;DPRA=0;EPP=33.4109;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.986111;PAO=0;PQA=0;PQR=0;PRO=0;QA=565;QR=2871;RO=72;RPL=0;RPP=33.4109;RPPR=159.356;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:24,3:24:951:3:118:-2.87377,0,-77.7693 0/1:14:11,3:11:438:3:122:-7.15807,0,-35.56 0/1:45:37,8:37:1482:8:325:-16.0727,0,-120.082 dDocent_Contig_7270 183 . T C 250.052 . AB=0.529412;ABP=3.13803;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=25;DPB=25;DPRA=1.0625;EPP=22.5536;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=352;QR=644;RO=16;RPL=9;RPP=22.5536;RPPR=37.7539;RPR=0;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:6,7:6:245:7:270:-20.7484,0,-18.5161 0/1:4:2,2:2:82:2:82:-6.57556,0,-6.57556 0/0:8:8,0:8:317:0:0:0,-2.40824,-28.8955 dDocent_Contig_7271 16 . A G 239.104 . AB=0.0930233;ABP=64.872;AC=0;AF=0;AN=6;AO=4;CIGAR=2M1X1M1X3M;DP=53;DPB=53;DPRA=0;EPP=11.6962;EPPR=65.983;GTI=0;LEN=1;MEANALT=3.5;MQM=49;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=1133;RO=29;RPL=0;RPP=11.6962;RPPR=65.983;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:18:9,2,0,2,3,2:9:344:2,0,2,3,2:77,0,77,121,77:-7.27137,-3.68329,-31.2959,-9.98064,-31.898,-38.1968,-3.7254,-25.641,-31.9397,-31.3377,0,-21.9201,-28.2194,-21.9619,-27.3163,-3.65996,-25.5761,-31.8749,-25.6179,-21.8969,-31.2728 0|0:10:2,0,4,0,3,0:2:76:0,4,0,3,0:0,156,0,120,0:-15.8844,-16.4864,-22.7162,-3.66682,-9.89352,-8.6894,-16.4864,-22.7162,-9.89352,-22.7162,-6.59749,-12.8271,0,-12.8271,-11.9241,-16.4864,-22.7162,-9.89352,-22.7162,-12.8271,-22.7162 0|0:25:18,0,3,2,2,0:18:713:0,3,2,2,0:0,120,80,77,0:-4.47102,-9.88956,-68.5766,0,-58.6908,-57.7877,-3.386,-62.0735,-52.1876,-61.4714,-3.57903,-62.2632,-52.3775,-55.7602,-61.6612,-9.88956,-68.5766,-58.6908,-62.0735,-62.2632,-68.5766 dDocent_Contig_7272 32 . T A 1190.2 . AB=0.683333;ABP=20.5268;AC=3;AF=0.5;AN=6;AO=41;CIGAR=2X;DP=60;DPB=60;DPRA=0;EPP=92.0407;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1553;QR=725;RO=19;RPL=0;RPP=92.0407;RPPR=44.2683;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:6,13:6:232:13:507:-40.2591,0,-15.5295 0|1:27:5,22:5:186:22:817:-65.7174,0,-8.97025 0|1:14:8,6:8:307:6:229:-16.7602,0,-23.7753 dDocent_Contig_7273 12 . T C 94.7261 . AB=0.166667;ABP=37.7539;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=60;DPB=60;DPRA=0.75;EPP=16.0391;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=2118;RO=54;RPL=0;RPP=16.0391;RPPR=120.27;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:20,2:20:775:2:78:-0.780641,0,-63.4393 0/0:24:24,0:24:939:0:0:0,-7.22472,-84.8167 0/1:14:10,4:10:404:4:161:-10.6609,0,-32.5056 dDocent_Contig_7274 14 . C A 192.225 . AB=0.217391;ABP=34.9215;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=24.725;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.583333;PAO=0;PQA=0;PQR=0;PRO=0;QA=396;QR=1438;RO=36;RPL=0;RPP=24.725;RPPR=81.1833;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:10,2:10:395:2:73:-3.31834,0,-32.2952 0/1:17:15,2:15:603:2:82:-2.66217,0,-49.4911 0/1:17:11,6:11:440:6:241:-16.9492,0,-34.8356 dDocent_Contig_7275 45 . T G 224.848 . AB=0.346154;ABP=8.35546;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=38;DPB=38;DPRA=1.08333;EPP=22.5536;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=354;QR=1132;RO=29;RPL=0;RPP=22.5536;RPPR=65.983;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:13,8:13:499:8:314:-22.3015,0,-38.9306 0/0:12:12,0:12:473:0:0:0,-3.61236,-42.9179 0/1:5:4,1:4:160:1:40:-2.49053,0,-13.2787 dDocent_Contig_7276 10 . G A 38.8594 . AB=0.133333;ABP=38.0434;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=122;DPB=122;DPRA=0.652174;EPP=11.6962;EPPR=259.244;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=153;QR=4653;RO=118;RPL=0;RPP=11.6962;RPPR=259.244;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=118;SRP=259.244;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:52:52,0:52:2047:0:0:0,-15.6536,-184.426 0/1:30:26,4:26:1023:4:153:-5.10774,0,-83.3382 0/0:40:40,0:40:1583:0:0:0,-12.0412,-142.702 dDocent_Contig_7277 48 . T C 1553.19 . AB=0.5;ABP=3.0103;AC=4;AF=0.666667;AN=6;AO=49;CIGAR=1X;DP=75;DPB=75;DPRA=0;EPP=109.412;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1951;QR=984;RO=26;RPL=0;RPP=109.412;RPPR=59.4686;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:7,21:7:249:21:825:-66.1382,0,-14.325 1/1:25:1,24:1:39:24:969:-83.6136,-3.62919,0 0/1:22:18,4:18:696:4:157:-7.88563,0,-56.3501 dDocent_Contig_7278 16 . A C 32.8171 . AB=0.2;ABP=10.8276;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X2M1X;DP=23;DPB=23;DPRA=1.53846;EPP=3.0103;EPPR=32.8939;GTI=0;LEN=1;MEANALT=1;MQM=45;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.809524;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=820;RO=21;RPL=0;RPP=7.35324;RPPR=48.6112;RPR=2;RUN=1;SAF=1;SAP=3.0103;SAR=1;SRF=19;SRP=32.8939;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:6:6,0:6:237:0:0:0,-1.80618,-21.7029 0|0:7:7,0:7:267:0:0:0,-2.10721,-24.3908 0|1:10:8,2:8:316:2:82:-4.50319,0,-25.7964 dDocent_Contig_7279 15 . C T 475.862 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=30;DPB=30;DPRA=2;EPP=33.4109;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=564;QR=639;RO=16;RPL=0;RPP=33.4109;RPPR=37.7539;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:15:1,14:1:40:14:564:-47.1073,-0.519771,0 0/0:7:7,0:7:286:0:0:0,-2.10721,-26.1148 0/0:8:8,0:8:313:0:0:0,-2.40824,-28.5325 dDocent_Contig_7280 45 . C T 84.8716 . AB=0.3;ABP=6.48466;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X3M;DP=31;DPB=31;DPRA=0.952381;EPP=9.52472;EPPR=55.1256;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.916667;PAO=0;PQA=0;PQR=0;PRO=0;QA=109;QR=942;RO=24;RPL=0;RPP=9.52472;RPPR=55.1256;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:10:3,4,3:3:119:4,3:128,109:-9.38529,0,-8.60849,-1.36878,-0.928101,-10.2945 0|0:10:10,0,0:10:388:0,0:0,0:0,-3.0103,-35.2748,-3.0103,-35.2748,-35.2748 0|0:11:11,0,0:11:435:0,0:0,0:0,-3.31133,-39.5054,-3.31133,-39.5054,-39.5054 dDocent_Contig_7282 26 . G A 6422.26 . AB=0.0424929;ABP=644.788;AC=0;AF=0;AN=6;AO=15;CIGAR=1X2M1X;DP=353;DPB=353;DPRA=0;EPP=35.5824;EPPR=196.271;GTI=0;LEN=1;MEANALT=4.66667;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=585;QR=3447;RO=89;RPL=0;RPP=35.5824;RPPR=196.271;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:132:39,5,6,7,75:39:1505:5,6,7,75:180,230,279,2995:-234.942,-231.999,-354.081,-227.809,-336.712,-349.59,-223.706,-332.61,-328.421,-345.187,0,-108.91,-104.719,-100.616,-101.016 0|0:119:23,6,6,8,74:23:881:6,6,8,74:226,237,311,2886:-230.279,-218.684,-289.171,-217.7,-271.474,-288.187,-211.648,-265.422,-264.438,-281.533,0,-53.774,-52.7881,-46.7363,-50.0161 0|0:102:27,1,3,13,58:27:1061:1,3,13,58:38,118,514,2295:-180.722,-185.734,-272.7,-179.143,-263.294,-265.507,-146.551,-230.702,-224.111,-229.905,0,-84.1509,-77.5603,-44.9675,-69.8073 dDocent_Contig_7283 43 . G A 298.342 . AB=0.292683;ABP=18.3165;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=76;DPB=76;DPRA=0;EPP=35.5824;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.918033;PAO=0;PQA=0;PQR=0;PRO=0;QA=584;QR=2398;RO=61;RPL=0;RPP=35.5824;RPPR=135.47;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:35:32,3:32:1264:3:98:0,-1.39536,-104.896 0/1:14:10,4:10:378:4:161:-10.6609,0,-30.1557 0/1:27:19,8:19:756:8:325:-21.4918,0,-60.2334 dDocent_Contig_7284 98 . N T 286.614 . 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AB=0.272727;ABP=22.751;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=2M1X7M;DP=58;DPB=58.3;DPRA=1.57143;EPP=3.0103;EPPR=83.3548;GTI=0;LEN=1;MEANALT=3;MQM=11;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=132;QR=1415;RO=37;RPL=0;RPP=29.068;RPPR=83.3548;RPR=12;RUN=1;SAF=6;SAP=3.0103;SAR=6;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:16:8,3,0,0,4:8:310:3,0,0,4:112,0,0,44:-6.86299,0,-24.751,-9.27123,-25.654,-34.8365,-9.27123,-25.654,-34.8365,-34.8365,-7.64718,-24.0027,-33.1705,-33.1705,-31.9664 0|1:28:15,0,3,2,8:15:570:0,3,2,8:0,106,78,88:-4.16476,-8.68021,-55.5251,0,-46.886,-45.983,-2.23246,-49.1059,-40.4652,-48.5038,-5.3852,-52.1383,-43.5107,-45.7252,-49.7301 0|0:14:14,0,0,0,0:14:535:0,0,0,0:0,0,0,0:0,-4.21442,-48.4941,-4.21442,-48.4941,-48.4941,-4.21442,-48.4941,-48.4941,-48.4941,-4.21442,-48.4941,-48.4941,-48.4941,-48.4941 dDocent_Contig_7286 15 . C T 544.739 . AB=0.33871;ABP=17.0198;AC=3;AF=0.5;AN=6;AO=21;CIGAR=2X;DP=62;DPB=62;DPRA=0;EPP=48.6112;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=42.5676;NS=3;NUMALT=2;ODDS=0;PAIRED=0.809524;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=837;QR=1472;RO=37;RPL=0;RPP=48.6112;RPPR=83.3548;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:16,3,0:16:640:3,0:117,0:-5.19064,0,-43.4264,-10.0071,-44.3295,-53.955 0|1:25:16,8,1:16:643:8,1:320,39:-21.5526,0,-38.8371,-23.1643,-38.0354,-64.121 0|1:18:5,10,3:5:189:10,3:400,119:-31.4473,0,-10.4212,-23.1851,-3.63962,-35.7302 dDocent_Contig_7287 9 . A G 98.537 . 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AB=0.266667;ABP=10.1038;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=35;DPB=35;DPRA=1.5;EPP=11.6962;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=145;QR=1189;RO=31;RPL=0;RPP=11.6962;RPPR=70.3259;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:11,4:11:417:4:145:-8.88733,0,-33.3649 0/0:3:3,0:3:119:0:0:0,-0.90309,-11.0954 0/0:17:17,0:17:653:0:0:0,-5.11751,-59.1026 dDocent_Contig_7289 70 . C T 152.393 . AB=0.166667;ABP=66.7068;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=66;DPB=66;DPRA=0;EPP=26.8965;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=418;QR=2007;RO=55;RPL=11;RPP=26.8965;RPPR=122.441;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:17,3:17:639:3:110:-4.23982,0,-51.8254 0/1:16:11,5:11:420:5:195:-13.1077,0,-33.3358 0/1:30:27,3:27:948:3:113:-1.50851,0,-76.5987 dDocent_Contig_7290 32 . T C 954.766 . AB=0.632653;ABP=10.4997;AC=3;AF=0.5;AN=6;AO=31;CIGAR=1X;DP=49;DPB=49;DPRA=0;EPP=70.3259;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1254;QR=721;RO=18;RPL=0;RPP=70.3259;RPPR=42.0968;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:283:2:81:-4.97646,0,-23.1332 0/1:5:1,4:1:40:4:160:-13.2783,0,-2.49053 0/1:35:10,25:10:398:25:1013:-80.9269,0,-25.6428 dDocent_Contig_7291 54 . T C 109.071 . AB=0.142857;ABP=65.0524;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=169;DPB=169;DPRA=0;EPP=29.068;EPPR=343.931;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=482;QR=6225;RO=157;RPL=12;RPP=29.068;RPPR=343.931;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=157;SRP=343.931;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:58:55,3:55:2179:3:123:0,-5.99495,-184.831 0/0:55:54,1:54:2131:1:41:0,-12.4621,-187.874 0/1:56:48,8:48:1915:8:318:-12.1289,0,-155.693 dDocent_Contig_7292 51 . G T 115.462 . 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AB=0.09375;ABP=232.372;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=3M1X3M1X9M1X1M;DP=160;DPB=160;DPRA=0;EPP=35.5824;EPPR=46.4397;GTI=0;LEN=1;MEANALT=14.3333;MQM=47;MQMR=60;NS=3;NUMALT=9;ODDS=5.55112e-17;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=594;QR=752;RO=20;RPL=0;RPP=35.5824;RPPR=46.4397;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:65:10,15,1,2,6,4,0,0,0,11:10:378:15,1,2,6,4,0,0,0,11:593,41,40,120,96,0,0,0,424:-49.3048,-3.49473,-29.9777,-49.0125,-31.1902,-79.7036,-49.8613,-32.0396,-77.5501,-80.2503,-44.9529,-27.1319,-72.6399,-73.4886,-74.1359,-45.9688,-28.1471,-73.6572,-74.5055,-69.5967,-75.7554,-52.3151,-34.4932,-80.0047,-80.8524,-75.942,-76.9595,-83.307,-52.3151,-34.4932,-80.0047,-80.8524,-75.942,-76.9595,-83.307,-83.307,-52.3151,-34.4932,-80.0047,-80.8524,-75.942,-76.9595,-83.307,-83.307,-83.307,-17.8262,0,-45.519,-46.3679,-41.4596,-42.4753,-48.8216,-48.8216,-48.8216,-45.5103 0|1:48:8,0,7,3,1,4,0,5,5,3:8:297:0,7,3,1,4,0,5,5,3:0,272,81,21,98,0,183,196,111:-19.5679,-21.9761,-46.2875,0,-24.3152,-22.2079,-16.4076,-40.7183,-18.7464,-39.8153,-20.6602,-44.9712,-22.9991,-39.4023,-44.6701,-15.4527,-39.7626,-17.7914,-34.1948,-38.4468,-38.5585,-21.9761,-46.2875,-24.3152,-40.7183,-44.9712,-39.7626,-46.2875,-7.20013,-31.5135,-9.53922,-25.9448,-30.1974,-24.9896,-31.5135,-30.0083,-5.8489,-30.163,-8.18811,-24.5941,-28.8469,-23.6388,-30.163,-15.3876,-28.6579,-12.94,-37.2526,-15.2791,-31.6837,-35.9364,-30.7283,-37.2526,-22.478,-21.1273,-36.3495 1|0:47:2,2,7,1,1,9,4,6,0,5:2:77:2,7,1,1,9,4,6,0,5:79,281,27,21,222,161,230,0,201:-34.4911,-28.5895,-34.3121,-12.4142,-12.2351,-16.6323,-33.2369,-33.0579,-16.8833,-39.2603,-33.7771,-33.5981,-17.4237,-38.2453,-39.8004,-20.2846,-20.1055,-3.93357,-24.7529,-25.2934,-23.8986,-21.8177,-21.6386,-5.46228,-26.2864,-26.8266,-13.3348,-26.9385,-16.356,-16.1769,0,-20.8249,-21.3653,-7.87509,-9.40444,-20.8749,-35.0932,-34.9141,-18.7395,-39.5613,-40.1014,-26.6079,-28.1426,-22.681,-41.4176,-18.7609,-18.5818,-2.4051,-23.2297,-23.77,-10.2788,-11.8094,-6.34741,-25.0859,-23.5808 dDocent_Contig_7294 11 . 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AB=0.166667;ABP=26.1727;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=56;DPB=56;DPRA=1.5;EPP=11.6962;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.5192;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.634615;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=2067;RO=52;RPL=0;RPP=11.6962;RPPR=115.927;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:20,4:20:807:4:157:-7.28296,0,-65.7202 0/0:15:15,0:15:575:0:0:0,-4.51545,-52.0647 0/0:17:17,0:17:685:0:0:0,-5.11751,-61.8513 dDocent_Contig_7296 8 . A G 2346.7 . AB=0.525316;ABP=3.88988;AC=3;AF=0.5;AN=6;AO=83;CIGAR=1X;DP=158;DPB=158;DPRA=0;EPP=183.243;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.88;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3167;QR=2774;RO=75;RPL=0;RPP=183.243;RPPR=165.871;RPR=83;RUN=1;SAF=83;SAP=183.243;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:37,19:37:1388:19:718:-48.0915,0,-108.35 0/1:50:24,26:24:859:26:984:-73.8208,0,-62.5645 0/1:52:14,38:14:527:38:1465:-116.474,0,-32.1182 dDocent_Contig_7297 7 . A G 33.7968 . AB=0.131148;ABP=75.0961;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=213;DPB=213;DPRA=0;EPP=31.2394;EPPR=437.305;GTI=0;LEN=1;MEANALT=1;MQM=55.6154;MQMR=57.835;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.94;PAO=0;PQA=0;PQR=0;PRO=0;QA=417;QR=7630;RO=200;RPL=0;RPP=31.2394;RPPR=437.305;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=200;SRP=437.305;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:54:51,3:51:1942:3:89:0,-7.96607,-165.021 0/0:98:96,2:96:3675:2:76:0,-22.3073,-323.196 0/1:61:53,8:53:2013:8:252:-4.60135,0,-162.153 dDocent_Contig_7298 10 . C T 330.576 . AB=0.245902;ABP=37.2199;AC=2;AF=0.333333;AN=6;AO=19;CIGAR=1X;DP=117;DPB=117;DPRA=0;EPP=44.2683;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=751;QR=3912;RO=98;RPL=0;RPP=44.2683;RPPR=215.815;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:23,5:23:914:5:199:-9.85952,0,-74.1381 0/0:56:52,4:52:2084:4:162:0,-1.89072,-172.778 0/1:33:23,10:23:914:10:390:-25.5168,0,-72.6354 dDocent_Contig_7299 173 . G A 205.319 . 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AB=0.0546875;ABP=223.483;AC=0;AF=0;AN=6;AO=7;CIGAR=5M1X2M1X5M1X2M3X2M1X;DP=128;DPB=128;DPRA=0;EPP=18.2106;EPPR=52.9542;GTI=0;LEN=1;MEANALT=10.6667;MQM=34.2857;MQMR=60;NS=3;NUMALT=9;ODDS=0;PAIRED=1;PAIREDR=0.826087;PAO=0;PQA=0;PQR=0;PRO=0;QA=190;QR=888;RO=23;RPL=0;RPP=18.2106;RPPR=52.9542;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:57:11,4,18,1,1,1,6,4,1,6:11:432:4,18,1,1,1,6,4,1,6:158,701,39,40,29,229,158,40,224:-54.3046,-44.6131,-78.9421,0,-22.5312,-30.1156,-54.4099,-76.9403,-32.3282,-89.6418,-54.3205,-76.8509,-32.2387,-86.6475,-89.5524,-55.3094,-77.8394,-33.228,-87.6359,-87.5465,-90.5408,-38.8314,-61.3617,-16.7498,-71.1583,-71.0689,-72.0576,-72.5581,-44.6133,-67.1438,-22.5314,-76.9405,-76.8511,-77.8396,-61.3619,-78.9423,-54.3205,-76.8509,-32.2387,-86.6475,-86.5581,-87.5465,-71.0689,-76.8511,-89.5524,-39.2837,-61.8138,-17.2024,-71.6104,-71.521,-72.5096,-56.0321,-61.814,-71.521,-73.0101 0|0:37:6,0,9,2,2,0,5,0,1,1:6:225:0,9,2,2,0,5,0,1,1:0,354,55,78,0,193,0,41,39:-27.3217,-29.1278,-47.5569,0,-18.431,-15.7218,-25.0583,-43.486,-14.3619,-42.884,-22.7149,-41.1442,-12.0175,-37.0736,-40.5421,-29.1278,-47.5569,-18.431,-43.486,-41.1442,-47.5569,-13.2756,-31.7052,-2.57715,-27.6353,-25.2922,-31.7052,-30.2001,-29.1278,-47.5569,-18.431,-43.486,-41.1442,-47.5569,-31.7052,-47.5569,-25.7425,-44.1718,-15.0453,-40.1011,-37.759,-44.1718,-28.3199,-44.1718,-43.8708,-25.9214,-44.3506,-15.2243,-40.2798,-37.9378,-44.3506,-28.4988,-44.3506,-40.9654,-44.0495 0|0:34:6,0,4,4,4,9,0,0,2,0:6:231:0,4,4,4,9,0,0,2,0:0,155,96,157,341,0,0,77,0:-26.1574,-27.9636,-46.9341,-15.2252,-34.1973,-32.9932,-21.6329,-40.5991,-27.865,-39.395,-15.0458,-34.0181,-21.2802,-27.6857,-32.814,0,-18.9745,-6.2353,-12.6472,-6.05579,-16.2653,-27.9636,-46.9341,-34.1973,-40.5991,-34.0181,-18.9745,-46.9341,-27.9636,-46.9341,-34.1973,-40.5991,-34.0181,-18.9745,-46.9341,-46.9341,-21.64,-40.6112,-27.874,-34.2775,-27.6947,-12.6506,-40.6112,-40.6112,-40.0091,-27.9636,-46.9341,-34.1973,-40.5991,-34.0181,-18.9745,-46.9341,-46.9341,-40.6112,-46.9341 dDocent_Contig_7316 10 . 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AB=0;ABP=0;AC=2;AF=1;AN=2;AO=13;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=31.2394;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=12.2298;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=434;QR=0;RO=0;RPL=13;RPP=31.2394;RPPR=0;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:13:0,13:0:0:13:434:-39.382,-3.91339,0 dDocent_Contig_7320 144 . T C 33.215 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=17;DPB=17;DPRA=1.4;EPP=7.35324;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=532;RO=15;RPL=0;RPP=7.35324;RPPR=35.5824;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=35.5824;SRR=15;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1,0:1:34:0:0:0,-0.30103,-3.39891 0/1:7:5,2:5:176:2:70:-4.54019,0,-14.078 0/0:9:9,0:9:322:0:0:0,-2.70927,-29.3243 dDocent_Contig_7321 27 . G T 704.149 . AB=0.394737;ABP=6.66752;AC=4;AF=0.666667;AN=6;AO=23;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=52.9542;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.913043;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=923;QR=901;RO=23;RPL=0;RPP=52.9542;RPPR=52.9542;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:8:0,8:0:0:8:313:-28.5313,-2.40824,0 0/1:18:15,3:15:579:3:121:-5.86166,0,-47.0288 0/1:20:8,12:8:322:12:489:-38.3407,0,-23.3275 dDocent_Contig_7322 13 . G A 340.195 . AB=0.352941;ABP=9.39698;AC=4;AF=0.666667;AN=6;AO=13;CIGAR=1X;DP=35;DPB=35;DPRA=0;EPP=31.2394;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.769231;PAIREDR=0.954545;PAO=0;PQA=0;PQR=0;PRO=0;QA=505;QR=869;RO=22;RPL=0;RPP=31.2394;RPPR=50.7827;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:16,9:16:638:9:347:-24.0601,0,-50.2276 0/1:9:6,3:6:231:3:120:-8.47804,0,-18.4455 1/1:1:0,1:0:0:1:38:-3.79727,-0.30103,0 dDocent_Contig_7325 28 . G T 59.3623 . AB=0.214286;ABP=12.937;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=56;DPB=56;DPRA=0.666667;EPP=9.52472;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=2113;RO=53;RPL=0;RPP=9.52472;RPPR=118.098;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:396:0:0:0,-3.0103,-35.9968 0/0:32:32,0:32:1280:0:0:0,-9.63296,-115.468 0/1:14:11,3:11:437:3:122:-7.15807,0,-35.469 dDocent_Contig_7326 8 . A G 1116.42 . AB=0.590909;ABP=7.74806;AC=3;AF=0.5;AN=6;AO=39;CIGAR=1X;DP=66;DPB=66;DPRA=0;EPP=87.6977;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1492;QR=978;RO=26;RPL=0;RPP=87.6977;RPPR=59.4686;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:5,8:5:186:8:298:-23.2606,0,-13.187 0/1:19:9,10:9:343:10:384:-29.1966,0,-25.5076 0/1:34:12,21:12:449:21:810:-62.9018,0,-30.4298 dDocent_Contig_7328 12 . C T 5348.64 . AB=0.0606061;ABP=113.69;AC=0;AF=0;AN=6;AO=4;CIGAR=1X3M1X;DP=250;DPB=250;DPRA=0;EPP=11.6962;EPPR=120.27;GTI=0;LEN=1;MEANALT=4;MQM=53;MQMR=59.6667;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.722222;PAO=0;PQA=0;PQR=0;PRO=0;QA=149;QR=2099;RO=54;RPL=0;RPP=11.6962;RPPR=120.27;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:100:18,0,79:18:704:0,79:0,2962:-236.17,-241.589,-299.476,0,-57.89,-34.1087 0|0:84:27,0,50:27:1044:0,50:0,1892:-146.966,-155.093,-240.797,0,-85.7026,-70.6511 0|0:66:9,4,50:9:351:4,50:149,1926:-155.445,-146,-173.648,0,-16.7093,-13.8087 dDocent_Contig_7329 23 . T A 63.3724 . AB=0.166667;ABP=26.1727;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=3X;DP=97;DPB=97;DPRA=1.36538;EPP=18.2106;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=281;QR=3530;RO=90;RPL=0;RPP=18.2106;RPPR=198.443;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:26:26,0:26:1015:0:0:0,-7.82678,-91.6531 0|0:47:44,3:44:1745:3:121:0,-2.86821,-145.998 0|1:24:20,4:20:770:4:160:-7.55908,0,-62.3885 dDocent_Contig_7330 32 . G A 127.512 . AB=0.333333;ABP=6.62942;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=2X3M1X4M;DP=73;DPB=73.2;DPRA=0.517241;EPP=13.8677;EPPR=135.47;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=2383;RO=61;RPL=0;RPP=13.8677;RPPR=135.47;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:24:23,0,0,1,0:23:906:0,0,1,0:0,0,40,0:0,-6.92369,-81.4545,-6.92369,-81.4545,-81.4545,-3.22904,-78.1592,-78.1592,-77.8581,-6.92369,-81.4545,-81.4545,-78.1592,-81.4545 0|0:34:30,2,0,0,2:30:1165:2,0,0,2:79,0,0,30:0,-2.40763,-97.7515,-9.0309,-98.3536,-104.856,-9.0309,-98.3536,-104.856,-104.856,-7.05529,-96.2705,-102.772,-102.772,-102.17 0|1:15:8,0,5,2,0:8:312:0,5,2,0:0,199,81,0:-13.973,-16.3813,-42.0211,0,-25.6333,-24.1281,-9.70011,-35.3404,-18.9511,-34.7383,-16.3813,-42.0211,-25.6333,-35.3404,-42.0211 dDocent_Contig_7331 18 . C A 186.018 . AB=0.214286;ABP=32.7905;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1M3D1X1M2X;DP=73;DPB=69.625;DPRA=0.677419;EPP=22.5536;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=360;QR=2451;RO=62;RPL=0;RPP=22.5536;RPPR=137.642;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:20:13,7:13:514:7:279:-19.4603,0,-40.5882 0|0:31:29,0:29:1151:0:0:0,-8.72987,-103.689 0|1:22:20,2:20:786:2:81:-1.06307,0,-64.4396 dDocent_Contig_7332 189 . A G 411.482 . 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AB=0.166667;ABP=20.3821;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=58;DPB=58;DPRA=0.9;EPP=9.52472;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.981818;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=2172;RO=55;RPL=3;RPP=9.52472;RPPR=122.441;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:705:0:0:0,-5.41854,-63.776 0/0:22:22,0:22:864:0:0:0,-6.62266,-78.0716 0/1:18:15,3:15:603:3:120:-5.76915,0,-49.1909 dDocent_Contig_7335 81 . T C 45.7923 . AB=0.210526;ABP=16.8392;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=21;DPB=21;DPRA=4.75;EPP=11.6962;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.5;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=133;QR=543;RO=17;RPL=4;RPP=11.6962;RPPR=39.9253;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:6,1:6:191:1:33:-1.19192,0,-15.3953 0/1:12:9,3:9:282:3:100:-5.71801,0,-22.0728 0/0:2:2,0:2:70:0:0:0,-0.60206,-6.6474 dDocent_Contig_7336 46 . T C 146.402 . AB=0.3;ABP=9.95901;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=32;DPB=32;DPRA=3.33333;EPP=16.0391;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=55.1154;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.884615;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=961;RO=26;RPL=0;RPP=16.0391;RPPR=59.4686;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:252:0:0:0,-2.10721,-23.0252 0/0:5:5,0:5:198:0:0:0,-1.50515,-18.1978 0/1:20:14,6:14:511:6:239:-15.8618,0,-35.0299 dDocent_Contig_7337 15 . T C 1066.73 . AB=0.507937;ABP=3.04477;AC=4;AF=0.666667;AN=6;AO=32;CIGAR=1X3M;DP=63;DPB=63;DPRA=0;EPP=72.4974;EPPR=39.9253;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1281;QR=669;RO=17;RPL=0;RPP=72.4974;RPPR=39.9253;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:22:8,0,6,8:8:311:0,6,8:0,234,318:-23.7788,-26.1871,-51.741,-7.08329,-32.6345,-30.8283,0,-25.5562,-6.4487,-23.148 1|1:20:2,5,0,13:2:79:5,0,13:200,0,518:-52.03,-36.1566,-41.152,-52.6321,-42.6571,-59.1326,-9.97899,0,-16.4785,-12.5651 0|1:21:7,3,0,11:7:279:3,0,11:122,0,445:-34.5813,-26.6248,-48.6943,-36.6885,-49.5974,-59.6612,0,-12.9036,-22.9693,-19.6579 dDocent_Contig_7338 15 . T C 3171.48 . AB=0.0409357;ABP=629.029;AC=0;AF=0;AN=6;AO=14;CIGAR=1X2M1X2M1X2M1X2M1I2X1M;DP=342;DPB=359;DPRA=0;EPP=33.4109;EPPR=105.07;GTI=0;LEN=1;MEANALT=11.6667;MQM=46.1429;MQMR=60;NS=3;NUMALT=6;ODDS=0;PAIRED=0.928571;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=522;QR=1859;RO=47;RPL=0;RPP=33.4109;RPPR=105.07;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:118:21,4,7,44,16,6,9:21:823:4,7,44,16,6,9:123,278,1232,587,72,319:-85.756,-82.5562,-149.048,-69.2382,-127.415,-134.829,0,-58.1783,-44.8599,-54.4517,-44.0922,-102.272,-88.9545,-19.7192,-106.976,-88.9679,-147.141,-133.825,-64.5961,-108.683,-154.855,-66.5309,-124.708,-111.391,-42.155,-86.2473,-131.118,-131.519 0|0:67:8,4,1,41,3,1,1:8:319:4,1,41,3,1,1:160,40,1195,114,12,40:-88.091,-77.4812,-102.563,-87.2106,-100.479,-113.194,0,-13.276,-23.0069,-13.9537,-81.1451,-94.4137,-104.142,-16.9417,-106.527,-89.9821,-103.25,-112.978,-25.7854,-106.913,-115.965,-87.2283,-100.497,-110.225,-23.0247,-104.16,-112.996,-113.212 0|0:157:18,6,7,73,9,6,25:18:717:6,7,73,9,6,25:239,282,1820,354,72,983:-147.018,-132.997,-190.248,-129.283,-168.902,-186.233,-21.3238,-60.9388,-57.2254,-58.4004,-124.96,-164.578,-160.865,-52.9039,-181.308,-149.322,-188.939,-185.226,-77.2735,-180.902,-206.571,-72.0488,-111.67,-107.956,0,-103.633,-127.996,-123.584 dDocent_Contig_7340 11 . 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AB=0.37464;ABP=50.3759;AC=5;AF=0.833333;AN=6;AO=130;CIGAR=6M1X;DP=347;DPB=328.143;DPRA=0;EPP=285.302;EPPR=161.528;GTI=0;LEN=1;MEANALT=6.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.958904;PAO=0;PQA=0;PQR=0;PRO=0;QA=5154;QR=2770;RO=73;RPL=0;RPP=285.302;RPPR=161.528;RPR=130;RUN=1;SAF=130;SAP=285.302;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:74:17,25,5,22:17:652:25,5,22:941,190,877:-90.6889,-18.7126,-64.6975,-80.2252,-56.6427,-132.234,-23.5818,0,-61.516,-70.4751 0|1:163:33,32,12,70:33:1233:32,12,70:1206,441,2805:-221.169,-132.279,-223.593,-195.054,-197.177,-292.39,0,-2.12181,-64.9011,-79.8792 1|1:110:23,31,13,38:23:885:31,13,38:1149,490,1472:-135.313,-48.2369,-111.566,-102.082,-80.745,-170.831,-21.3349,0,-53.845,-82.5606 dDocent_Contig_7342 74 . C T 126.816 . AB=0.26087;ABP=14.4341;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=29;DPB=29;DPRA=1.91667;EPP=16.0391;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=881;RO=23;RPL=6;RPP=16.0391;RPPR=52.9542;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:10,5:10:390:5:195:-13.4079,0,-30.9393 0/1:8:7,1:7:257:1:39:-1.48832,0,-21.0721 0/0:6:6,0:6:234:0:0:0,-1.80618,-21.4311 dDocent_Contig_7343 1 . N G 315.652 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=10.1503;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=347;QR=0;RO=0;RPL=0;RPP=24.725;RPPR=0;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:10:0,10:0:0:10:347:-31.5652,-3.0103,0 dDocent_Contig_7344 7 . A T 517.49 . AB=0.465116;ABP=3.46479;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X;DP=43;DPB=43;DPRA=0;EPP=13.8677;EPPR=44.6459;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.25;PAIREDR=0.956522;PAO=0;PQA=0;PQR=0;PRO=0;QA=748;QR=845;RO=23;RPL=0;RPP=46.4397;RPPR=52.9542;RPR=20;RUN=1;SAF=15;SAP=13.8677;SAR=5;SRF=22;SRP=44.6459;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:14,12:14:529:12:439:-32.0243,0,-40.1253 0/1:6:2,4:2:70:4:155:-12.5193,0,-4.84122 0/1:11:7,4:7:246:4:154:-10.9221,0,-19.1651 dDocent_Contig_7345 41 . T C 334.652 . AB=0.578947;ABP=4.03889;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=29;DPB=29;DPRA=3.8;EPP=26.8965;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.3889;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.944444;PAO=0;PQA=0;PQR=0;PRO=0;QA=445;QR=699;RO=18;RPL=0;RPP=26.8965;RPPR=42.0968;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:282:0:0:0,-2.10721,-25.7532 0/0:3:3,0:3:116:0:0:0,-0.90309,-10.2406 0/1:19:8,11:8:301:11:445:-34.6863,0,-21.7179 dDocent_Contig_7347 38 . C T 80.081 . AB=0.126984;ABP=79.1497;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=114;DPB=114;DPRA=0.617647;EPP=20.3821;EPPR=233.186;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=317;QR=4215;RO=106;RPL=0;RPP=20.3821;RPPR=233.186;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:23,4:23:908:4:157:-6.38062,0,-73.898 0/0:51:51,0:51:2021:0:0:0,-15.3525,-182.087 0/1:36:32,4:32:1286:4:160:-3.94584,0,-105.169 dDocent_Contig_7348 10 . A G 142.763 . AB=0.375;ABP=5.18177;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=32;DPB=32;DPRA=0.5;EPP=16.0391;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=229;QR=978;RO=26;RPL=0;RPP=16.0391;RPPR=59.4686;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:586:0:0:0,-4.81648,-53.0579 0/1:7:6,1:6:231:1:41:-1.98736,0,-19.0475 0/1:9:4,5:4:161:5:188:-14.572,0,-12.1656 dDocent_Contig_7349 121 . C A 31.2924 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=27;DPB=27;DPRA=0.7;EPP=7.35324;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=68;QR=843;RO=25;RPL=0;RPP=7.35324;RPPR=57.2971;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:239:0:0:0,-2.10721,-21.8439 0/1:7:5,2:5:173:2:68:-4.35072,0,-13.803 0/0:13:13,0:13:431:0:0:0,-3.91339,-39.1083 dDocent_Contig_7351 46 . T C 38.6762 . AB=0.25;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X2M1X;DP=33;DPB=33;DPRA=0.64;EPP=7.35324;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=1216;RO=31;RPL=0;RPP=7.35324;RPPR=70.3259;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:17:17,0:17:663:0:0:0,-5.11751,-60.0035 0|1:8:6,2:6:236:2:79:-5.08939,0,-19.204 0|0:8:8,0:8:317:0:0:0,-2.40824,-28.897 dDocent_Contig_7352 129 . A C 79.6327 . AB=0.407407;ABP=5.02092;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=55;DPB=55;DPRA=1.92857;EPP=26.8965;EPPR=92.0407;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=188;QR=986;RO=41;RPL=0;RPP=26.8965;RPPR=92.0407;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=92.0407;SRR=41;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:8,0:8:186:0:0:0,-2.40824,-16.8731 0/1:27:15,11:15:338:11:188:-9.1851,0,-22.7339 0/0:19:18,0:18:462:0:0:0,-5.41854,-41.7488 dDocent_Contig_7353 107 . N T 296.908 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=57.4;MQMR=0;NS=3;NUMALT=1;ODDS=6.77626e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=317;QR=0;RO=0;RPL=0;RPP=24.725;RPPR=0;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:101:-9.4236,-0.90309,0 1/1:2:0,2:0:0:2:41:-3.89396,-0.60206,0 1/1:5:0,5:0:0:5:175:-15.7694,-1.50515,0 dDocent_Contig_7355 27 . C T 61.4234 . 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